mirror of
https://github.com/wassname/pytorch-lightning.git
synced 2026-09-11 12:31:23 +08:00
@@ -0,0 +1 @@
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from .new_project_templates.lightning_module_template import LightningTemplateModel
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@@ -28,6 +28,9 @@ class LightningTemplateModel(LightningModule):
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self.batch_size = hparams.batch_size
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# if you specify an example input, the summary will show input/output for each layer
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self.example_input_array = torch.rand(5, 28 * 28)
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# build model
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self.__build_model()
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@@ -78,11 +81,16 @@ class LightningTemplateModel(LightningModule):
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# forward pass
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x, y = data_batch
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x = x.view(x.size(0), -1)
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y_hat = self.forward(x)
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# calculate loss
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loss_val = self.loss(y, y_hat)
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# in DP mode (default) make sure if result is scalar, there's another dim in the beginning
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if self.trainer.use_dp:
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loss_val = loss_val.unsqueeze(0)
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output = OrderedDict({
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'loss': loss_val
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})
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@@ -105,10 +113,19 @@ class LightningTemplateModel(LightningModule):
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# acc
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labels_hat = torch.argmax(y_hat, dim=1)
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val_acc = torch.sum(y == labels_hat).item() / (len(y) * 1.0)
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val_acc = torch.tensor(val_acc)
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if self.on_gpu:
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val_acc = val_acc.cuda(loss_val.device.index)
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# in DP mode (default) make sure if result is scalar, there's another dim in the beginning
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if self.trainer.use_dp:
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loss_val = loss_val.unsqueeze(0)
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val_acc = val_acc.unsqueeze(0)
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output = OrderedDict({
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'val_loss': loss_val,
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'val_acc': torch.tensor(val_acc).cuda(loss_val.device.index),
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'val_acc': val_acc,
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})
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# can also return just a scalar instead of a dict (return loss_val)
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@@ -135,9 +152,6 @@ class LightningTemplateModel(LightningModule):
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tqdm_dic = {'val_loss': val_loss_mean.item(), 'val_acc': val_acc_mean.item()}
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return tqdm_dic
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def update_tng_log_metrics(self, logs):
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return logs
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# ---------------------
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# MODEL SAVING
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# ---------------------
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@@ -217,7 +231,7 @@ class LightningTemplateModel(LightningModule):
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return self._test_dataloader
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@staticmethod
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def add_model_specific_args(parent_parser, root_dir):
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def add_model_specific_args(parent_parser, root_dir): # pragma: no cover
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"""
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Parameters you define here will be available to your model through self.hparams
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:param parent_parser:
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@@ -19,12 +19,12 @@ import tqdm
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from pytorch_lightning.root_module.memory import get_gpu_memory_map
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from pytorch_lightning.root_module.model_saving import TrainerIO
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from pytorch_lightning.pt_overrides.override_data_parallel import LightningDistributedDataParallel, LightningDataParallel
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from pytorch_lightning.utils.debugging import MisconfigurationException
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try:
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from apex import amp
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APEX_AVAILABLE = True
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except ModuleNotFoundError:
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except ModuleNotFoundError: # pragma: no cover
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APEX_AVAILABLE = False
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@@ -114,6 +114,7 @@ class Trainer(TrainerIO):
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"""
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# Transfer params
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self.nb_gpu_nodes = nb_gpu_nodes
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self.gradient_clip = gradient_clip
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self.check_val_every_n_epoch = check_val_every_n_epoch
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@@ -150,6 +151,16 @@ class Trainer(TrainerIO):
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self.use_ddp = False
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self.use_dp = False
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# training bookeeping
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self.total_batch_nb = 0
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self.running_loss = []
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self.avg_loss = 0
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self.batch_nb = 0
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self.tqdm_metrics = {}
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self.nb_val_batches = None
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self.nb_tng_batches = None
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self.nb_test_batches = None
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# gpus come in as a string.
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# if gpus = -1 then use all available devices
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@@ -178,7 +189,7 @@ class Trainer(TrainerIO):
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self.use_ddp = distributed_backend == 'ddp'
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# use ddp automatically if nb_gpu_nodes > 1
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if nb_gpu_nodes > 1 and self.use_dp:
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if nb_gpu_nodes > 1 and self.use_dp: # pragma: no cover
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self.use_ddp = True
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self.use_dp = False
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w = 'DataParallel does not support nb_gpu_nodes > 1. ' \
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@@ -186,6 +197,19 @@ class Trainer(TrainerIO):
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'To silence this warning set distributed_backend=ddp'
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warnings.warn(w)
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# extract SLURM flag vars
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# whenever we have the correct number of tasks, we let slurm manage processes
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# otherwise we launch the required number of processes
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if self.use_ddp:
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self.nb_requested_gpus = len(self.data_parallel_device_ids) * self.nb_gpu_nodes
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self.nb_slurm_tasks = 0
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try:
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self.nb_slurm_tasks = int(os.environ['SLURM_NTASKS'])
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self.is_slurm_managing_tasks = self.nb_slurm_tasks == self.nb_requested_gpus
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except Exception as e:
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# likely not on slurm, so set the slurm managed flag to false
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self.is_slurm_managing_tasks = False
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# process info
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self.proc_rank = 0
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@@ -215,7 +239,7 @@ class Trainer(TrainerIO):
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if self.use_amp:
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print('using 16bit precision')
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if use_amp and not APEX_AVAILABLE:
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if use_amp and not APEX_AVAILABLE: # pragma: no cover
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msg = '''
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You set use_amp=True but do not have apex installed.
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Install apex first using this guide and rerun with use_amp=True:
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@@ -223,7 +247,7 @@ class Trainer(TrainerIO):
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this run will NOT use 16 bit precision
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'''
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warnings.warn(msg)
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raise ModuleNotFoundError(msg)
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@property
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def data_parallel(self):
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@@ -251,6 +275,7 @@ class Trainer(TrainerIO):
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@property
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def __tng_tqdm_dic(self):
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# ForkedPdb().set_trace()
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tqdm_dic = {
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'tng_loss': '{0:.3f}'.format(self.avg_loss),
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'v_nb': '{}'.format(self.experiment.version),
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@@ -264,13 +289,15 @@ class Trainer(TrainerIO):
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return tqdm_dic
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@property
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def tng_tqdm_dic(self):
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"""
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Read-only for tqdm metrics
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:return:
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"""
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return self.__tng_tqdm_dic
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def __layout_bookeeping(self):
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# training bookeeping
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self.total_batch_nb = 0
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self.running_loss = []
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self.avg_loss = 0
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self.batch_nb = 0
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self.tqdm_metrics = {}
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# determine number of training batches
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self.nb_tng_batches = len(self.tng_dataloader)
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@@ -317,7 +344,7 @@ class Trainer(TrainerIO):
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# run training
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for batch_i, data_batch in enumerate(dataloader):
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if data_batch is None:
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if data_batch is None: # pragma: no cover
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continue
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# stop short when on fast dev run
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@@ -356,7 +383,7 @@ class Trainer(TrainerIO):
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return val_results
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def __get_dataloaders(self, model):
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def get_dataloaders(self, model):
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"""
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Dataloaders are provided by the model
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:param model:
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@@ -379,7 +406,7 @@ class Trainer(TrainerIO):
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dist_sampler = torch.utils.data.distributed.DistributedSampler(dataset)
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dataloader = Dataloader(dataset, sampler=dist_sampler)
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'''
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raise Exception(msg)
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raise MisconfigurationException(msg)
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# -----------------------------
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# MODEL TRAINING
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@@ -391,25 +418,14 @@ class Trainer(TrainerIO):
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# must copy only the meta of the exp so it survives pickle/unpickle when going to new process
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self.experiment = self.experiment.get_meta_copy()
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# whenever we have the correct number of tasks, we let slurm manage processes
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# otherwise we launch the required number of processes
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nb_requested_gpus = len(self.data_parallel_device_ids) * self.nb_gpu_nodes
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nb_slurm_tasks = 0
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try:
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nb_slurm_tasks = int(os.environ['SLURM_NTASKS'])
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is_slurm_managing_tasks = nb_slurm_tasks == nb_requested_gpus
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except Exception as e:
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# likely not on slurm, so set the slurm managed flag to false
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is_slurm_managing_tasks = False
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if is_slurm_managing_tasks:
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if self.is_slurm_managing_tasks:
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task = int(os.environ['SLURM_LOCALID'])
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self.ddp_train(task, model)
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else:
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msg = f"""
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You requested {nb_requested_gpus} GPUs but launched {nb_slurm_tasks} slurm tasks.
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We will launch {nb_requested_gpus} processes for you.
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We recommend you let slurm manage the processes by setting: --ntasks-per-node={nb_requested_gpus}
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You requested {self.nb_requested_gpus} GPUs but launched {self.nb_slurm_tasks} slurm tasks.
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We will launch {self.nb_requested_gpus} processes for you.
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We recommend you let slurm manage the processes by setting: --ntasks-per-node={self.nb_requested_gpus}
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If you're not using SLURM, ignore this message!
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"""
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warnings.warn(msg)
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@@ -418,7 +434,7 @@ class Trainer(TrainerIO):
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# 1 gpu or dp option triggers training using DP module
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# easier to avoid NCCL issues
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elif self.use_dp:
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self.dp_train(model)
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self.__dp_train(model)
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# ON CPU
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else:
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@@ -428,15 +444,15 @@ class Trainer(TrainerIO):
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# run through amp wrapper
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if self.use_amp:
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# An example
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model, optimizers = amp.initialize(
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model, self.optimizers, opt_level=self.amp_level,
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)
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self.optimizers = optimizers
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raise MisconfigurationException('amp + cpu is not supported. Please use a GPU option')
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self.__run_pretrain_routine(model)
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def dp_train(self, model):
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# return 1 when finished
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# used for testing or when we need to know that training succeeded
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return 1
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def __dp_train(self, model):
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# CHOOSE OPTIMIZER
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# filter out the weights that were done on gpu so we can load on good old cpus
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@@ -444,13 +460,13 @@ class Trainer(TrainerIO):
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model.cuda(self.data_parallel_device_ids[0])
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# run through amp wrapper
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if self.use_amp:
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# An example
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model, optimizers = amp.initialize(
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model, self.optimizers, opt_level=self.amp_level,
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)
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self.optimizers = optimizers
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# check for this bug (amp + dp + !01 doesn't work)
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# https://github.com/NVIDIA/apex/issues/227
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if self.use_dp and self.use_amp:
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m = f'amp level {self.amp_level} with DataParallel is not supported. ' \
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f'See this note from NVIDIA for more info: https://github.com/NVIDIA/apex/issues/227. ' \
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f'We recommend you switch to ddp if you want to use amp'
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raise MisconfigurationException(m)
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model = LightningDataParallel(model, device_ids=self.data_parallel_device_ids)
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@@ -520,22 +536,22 @@ class Trainer(TrainerIO):
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:param tries:
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:return:
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"""
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# sets the appropriate port
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try:
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port = os.environ['MASTER_PORT']
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except Exception as e:
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port = 12910
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os.environ['MASTER_PORT'] = f'{port}'
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root_node = self.__resolve_root_node_address()
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# figure out the root node addr
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root_node = os.environ['SLURM_NODELIST'].split(' ')[0]
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root_node = self.resolve_root_node_address(root_node)
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os.environ['MASTER_ADDR'] = root_node
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dist.init_process_group("nccl", rank=self.proc_rank, world_size=self.world_size)
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def __resolve_root_node_address(self):
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def resolve_root_node_address(self, root_node):
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try:
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root_node = os.environ['SLURM_NODELIST'].split(' ')[0]
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if '[' in root_node:
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name = root_node.split('[')[0]
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number = root_node.split(',')[0]
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@@ -566,7 +582,7 @@ class Trainer(TrainerIO):
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ref_model.on_gpu = self.on_gpu
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# transfer data loaders from model
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self.__get_dataloaders(ref_model)
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self.get_dataloaders(ref_model)
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# init training constants
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self.__layout_bookeeping()
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@@ -593,7 +609,7 @@ class Trainer(TrainerIO):
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self.experiment.save()
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# enable cluster checkpointing
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if self.cluster is not None:
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if self.cluster is not None: # pragma: no cover
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self.enable_auto_hpc_walltime_manager()
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# ---------------------------
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@@ -662,7 +678,7 @@ class Trainer(TrainerIO):
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# nb_params, nb_tensors = count_mem_items()
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model = self.__get_model()
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metrics = model.update_tng_log_metrics(self.__tng_tqdm_dic)
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metrics = self.__tng_tqdm_dic
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# add gpu memory
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if self.on_gpu:
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@@ -9,7 +9,7 @@ from torch.cuda._utils import _get_device_index
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import pdb
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def _find_tensors(obj):
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def _find_tensors(obj): # pragma: no cover
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r"""
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Recursively find all tensors contained in the specified object.
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"""
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@@ -22,8 +22,7 @@ def _find_tensors(obj):
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return []
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def get_a_var(obj):
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def get_a_var(obj): # pragma: no cover
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if isinstance(obj, torch.Tensor):
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return obj
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@@ -78,7 +77,7 @@ class LightningDistributedDataParallel(DistributedDataParallel):
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def parallel_apply(self, replicas, inputs, kwargs):
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return parallel_apply(replicas, inputs, kwargs, self.device_ids[:len(replicas)])
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def forward(self, *inputs, **kwargs):
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def forward(self, *inputs, **kwargs): # pragma: no cover
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self._sync_params()
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if self.device_ids:
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||||
inputs, kwargs = self.scatter(inputs, kwargs, self.device_ids)
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@@ -113,7 +112,7 @@ class LightningDistributedDataParallel(DistributedDataParallel):
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return output
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||||
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||||
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||||
def parallel_apply(modules, inputs, kwargs_tup=None, devices=None):
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||||
def parallel_apply(modules, inputs, kwargs_tup=None, devices=None): # pragma: no cover
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||||
r"""Applies each `module` in :attr:`modules` in parallel on arguments
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||||
contained in :attr:`inputs` (positional) and :attr:`kwargs_tup` (keyword)
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||||
on each of :attr:`devices`.
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||||
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||||
@@ -27,14 +27,3 @@ class GradInformation(nn.Module):
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||||
results['grad_{}_norm_total'.format(norm_type)] = round(total_norm.data.cpu().numpy().flatten()[0], 3)
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||||
return results
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||||
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||||
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||||
def describe_grads(self):
|
||||
for p in self.parameters():
|
||||
g = p.grad.data.numpy().flatten()
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||||
print(np.max(g), np.min(g), np.mean(g))
|
||||
|
||||
|
||||
def describe_params(self):
|
||||
for p in self.parameters():
|
||||
g = p.data.numpy().flatten()
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||||
print(np.max(g), np.min(g), np.mean(g))
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||||
@@ -33,33 +33,42 @@ class ModelSummary(object):
|
||||
mods = list(self.model.modules())
|
||||
in_sizes = []
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||||
out_sizes = []
|
||||
input_ = self.example_input_array
|
||||
for i in range(1, len(mods)):
|
||||
m = mods[i]
|
||||
if type(input_) is list or type(input_) is tuple:
|
||||
out = m(*input_)
|
||||
else:
|
||||
out = m(input_)
|
||||
input_ = self.model.example_input_array
|
||||
|
||||
if type(input_) is tuple or type(input_) is list:
|
||||
in_size = []
|
||||
for x in input_:
|
||||
if type(x) is list:
|
||||
in_size.append(len(x))
|
||||
else:
|
||||
in_size.append(x.size())
|
||||
else:
|
||||
in_size = np.array(input_.size())
|
||||
if self.model.on_gpu:
|
||||
input_ = input_.cuda(0)
|
||||
|
||||
in_sizes.append(in_size)
|
||||
if self.model.trainer.use_amp:
|
||||
input_ = input_.half()
|
||||
|
||||
if type(out) is tuple or type(out) is list:
|
||||
out_size = np.asarray([x.size() for x in out])
|
||||
else:
|
||||
out_size = np.array(out.size())
|
||||
with torch.no_grad():
|
||||
|
||||
out_sizes.append(out_size)
|
||||
input_ = out
|
||||
for i in range(1, len(mods)):
|
||||
m = mods[i]
|
||||
if type(input_) is list or type(input_) is tuple: # pragma: no cover
|
||||
out = m(*input_)
|
||||
else:
|
||||
out = m(input_)
|
||||
|
||||
if type(input_) is tuple or type(input_) is list: # pragma: no cover
|
||||
in_size = []
|
||||
for x in input_:
|
||||
if type(x) is list:
|
||||
in_size.append(len(x))
|
||||
else:
|
||||
in_size.append(x.size())
|
||||
else:
|
||||
in_size = np.array(input_.size())
|
||||
|
||||
in_sizes.append(in_size)
|
||||
|
||||
if type(out) is tuple or type(out) is list: # pragma: no cover
|
||||
out_size = np.asarray([x.size() for x in out])
|
||||
else:
|
||||
out_size = np.array(out.size())
|
||||
|
||||
out_sizes.append(out_size)
|
||||
input_ = out
|
||||
|
||||
self.in_sizes = in_sizes
|
||||
self.out_sizes = out_sizes
|
||||
@@ -114,13 +123,22 @@ class ModelSummary(object):
|
||||
Layer Name, Layer Type, Input Size, Output Size, Number of Parameters
|
||||
'''
|
||||
|
||||
df = pd.DataFrame( np.zeros( (len(self.layer_names), 3) ) )
|
||||
df.columns = ['Name', 'Type', 'Params']
|
||||
cols = ['Name', 'Type', 'Params']
|
||||
if self.model.example_input_array is not None:
|
||||
cols.extend(['In_sizes', 'Out_sizes'])
|
||||
|
||||
df = pd.DataFrame(np.zeros( (len(self.layer_names), len(cols))))
|
||||
df.columns = cols
|
||||
|
||||
df['Name'] = self.layer_names
|
||||
df['Type'] = self.layer_types
|
||||
df['Params'] = self.param_nums
|
||||
|
||||
if self.model.example_input_array is not None:
|
||||
|
||||
df['In_sizes'] = self.in_sizes
|
||||
df['Out_sizes'] = self.out_sizes
|
||||
|
||||
self.summary = df
|
||||
return
|
||||
|
||||
@@ -128,10 +146,13 @@ class ModelSummary(object):
|
||||
self.get_layer_names()
|
||||
self.get_parameter_sizes()
|
||||
self.get_parameter_nums()
|
||||
|
||||
if self.model.example_input_array is not None:
|
||||
self.get_variable_sizes()
|
||||
self.make_summary()
|
||||
|
||||
|
||||
def print_mem_stack():
|
||||
def print_mem_stack(): # pragma: no cover
|
||||
for obj in gc.get_objects():
|
||||
try:
|
||||
if torch.is_tensor(obj) or (hasattr(obj, 'data') and torch.is_tensor(obj.data)):
|
||||
@@ -140,7 +161,7 @@ def print_mem_stack():
|
||||
pass
|
||||
|
||||
|
||||
def count_mem_items():
|
||||
def count_mem_items(): # pragma: no cover
|
||||
nb_params = 0
|
||||
nb_tensors = 0
|
||||
for obj in gc.get_objects():
|
||||
|
||||
@@ -41,6 +41,12 @@ class ModelIO(object):
|
||||
|
||||
class TrainerIO(object):
|
||||
|
||||
def __get_model(self):
|
||||
print(type(self.model))
|
||||
is_dp_module = type(self.model) is LightningDistributedDataParallel or type(self.model) is LightningDataParallel
|
||||
model = self.model.module if is_dp_module else self.model
|
||||
return model
|
||||
|
||||
# --------------------
|
||||
# MODEL SAVE CHECKPOINT
|
||||
# --------------------
|
||||
@@ -51,14 +57,19 @@ class TrainerIO(object):
|
||||
torch.save(checkpoint, filepath)
|
||||
|
||||
def dump_checkpoint(self):
|
||||
|
||||
checkpoint = {
|
||||
'epoch': self.current_epoch,
|
||||
'checkpoint_callback_best': self.checkpoint_callback.best,
|
||||
'early_stop_callback_wait': self.early_stop_callback.wait,
|
||||
'early_stop_callback_patience': self.early_stop_callback.patience,
|
||||
'global_step': self.global_step
|
||||
}
|
||||
|
||||
if self.checkpoint_callback is not None:
|
||||
checkpoint['checkpoint_callback_best'] = self.checkpoint_callback.best
|
||||
|
||||
if self.early_stop_callback is not None:
|
||||
checkpoint['early_stop_callback_wait'] = self.early_stop_callback.wait
|
||||
checkpoint['early_stop_callback_patience'] = self.early_stop_callback.patience
|
||||
|
||||
optimizer_states = []
|
||||
for i, optimizer in enumerate(self.optimizers):
|
||||
optimizer_states.append(optimizer.state_dict())
|
||||
@@ -66,8 +77,7 @@ class TrainerIO(object):
|
||||
checkpoint['optimizer_states'] = optimizer_states
|
||||
|
||||
# request what to save from the model
|
||||
is_dp_module = type(self.model) is LightningDistributedDataParallel or type(self.model) is LightningDataParallel
|
||||
model = self.model.module if is_dp_module else self.model
|
||||
model = self.__get_model()
|
||||
checkpoint_dict = model.get_save_dict()
|
||||
|
||||
# merge trainer and model saving items
|
||||
@@ -77,7 +87,7 @@ class TrainerIO(object):
|
||||
# --------------------
|
||||
# HPC IO
|
||||
# --------------------
|
||||
def enable_auto_hpc_walltime_manager(self):
|
||||
def enable_auto_hpc_walltime_manager(self): # pragma: no cover
|
||||
if self.cluster is None:
|
||||
return
|
||||
|
||||
@@ -104,9 +114,13 @@ class TrainerIO(object):
|
||||
:param checkpoint:
|
||||
:return:
|
||||
"""
|
||||
self.checkpoint_callback.best = checkpoint['checkpoint_callback_best']
|
||||
self.early_stop_callback.wait = checkpoint['early_stop_callback_wait']
|
||||
self.early_stop_callback.patience = checkpoint['early_stop_callback_patience']
|
||||
if self.checkpoint_callback is not None:
|
||||
self.checkpoint_callback.best = checkpoint['checkpoint_callback_best']
|
||||
|
||||
if self.early_stop_callback is not None:
|
||||
self.early_stop_callback.wait = checkpoint['early_stop_callback_wait']
|
||||
self.early_stop_callback.patience = checkpoint['early_stop_callback_patience']
|
||||
|
||||
self.global_step = checkpoint['global_step']
|
||||
self.current_epoch = checkpoint['epoch']
|
||||
|
||||
@@ -135,7 +149,8 @@ class TrainerIO(object):
|
||||
filepath = '{}/hpc_ckpt_{}.ckpt'.format(folderpath, ckpt_number)
|
||||
|
||||
# give model a chance to do something on hpc_save
|
||||
self.on_hpc_save()
|
||||
model = self.__get_model()
|
||||
model.on_hpc_save()
|
||||
|
||||
# request what to save from the model
|
||||
checkpoint_dict = self.dump_checkpoint()
|
||||
@@ -155,11 +170,11 @@ class TrainerIO(object):
|
||||
self.restore_training_state(checkpoint)
|
||||
|
||||
# load model state
|
||||
model = self.model.module if type(self.model) is LightningDataParallel else self.model
|
||||
model = self.__get_model()
|
||||
model.load_model_specific(checkpoint)
|
||||
|
||||
# call model hook
|
||||
self.on_hpc_load()
|
||||
model.on_hpc_load()
|
||||
|
||||
def max_ckpt_in_folder(self, path):
|
||||
files = os.listdir(path)
|
||||
|
||||
@@ -1,22 +0,0 @@
|
||||
from torch import nn
|
||||
from torch import optim
|
||||
|
||||
|
||||
class OptimizerConfig(nn.Module):
|
||||
|
||||
def choose_optimizer(self, optimizer, params, optimizer_params, opt_name_key):
|
||||
if optimizer == 'adam':
|
||||
optimizer = optim.Adam(params, **optimizer_params)
|
||||
if optimizer == 'sparse_adam':
|
||||
optimizer = optim.SparseAdam(params, **optimizer_params)
|
||||
if optimizer == 'sgd':
|
||||
optimizer = optim.SGD(params, **optimizer_params)
|
||||
if optimizer == 'adadelta':
|
||||
optimizer = optim.Adadelta(params, **optimizer_params)
|
||||
|
||||
# transfer opt state if loaded
|
||||
if opt_name_key in self.loaded_optimizer_states_dict:
|
||||
state = self.loaded_optimizer_states_dict[opt_name_key]
|
||||
optimizer.load_state_dict(state)
|
||||
|
||||
return optimizer
|
||||
@@ -5,11 +5,10 @@ import math
|
||||
from pytorch_lightning.root_module.memory import ModelSummary
|
||||
from pytorch_lightning.root_module.grads import GradInformation
|
||||
from pytorch_lightning.root_module.model_saving import ModelIO, load_hparams_from_tags_csv
|
||||
from pytorch_lightning.root_module.optimization import OptimizerConfig
|
||||
from pytorch_lightning.root_module.hooks import ModelHooks
|
||||
|
||||
|
||||
class LightningModule(GradInformation, ModelIO, OptimizerConfig, ModelHooks):
|
||||
class LightningModule(GradInformation, ModelIO, ModelHooks):
|
||||
|
||||
def __init__(self, hparams):
|
||||
super(LightningModule, self).__init__()
|
||||
@@ -22,6 +21,7 @@ class LightningModule(GradInformation, ModelIO, OptimizerConfig, ModelHooks):
|
||||
self.loaded_optimizer_states_dict = {}
|
||||
self.trainer = None
|
||||
self.experiment = None
|
||||
self.example_input_array = None
|
||||
|
||||
# track if gpu was requested for checkpointing
|
||||
self.on_gpu = False
|
||||
@@ -71,15 +71,6 @@ class LightningModule(GradInformation, ModelIO, OptimizerConfig, ModelHooks):
|
||||
"""
|
||||
raise NotImplementedError
|
||||
|
||||
def update_tng_log_metrics(self, logs):
|
||||
"""
|
||||
Chance to update metrics to be logged for training step.
|
||||
For example, add music, images, etc... to log
|
||||
:param logs:
|
||||
:return:
|
||||
"""
|
||||
return logs
|
||||
|
||||
def loss(self, *args, **kwargs):
|
||||
"""
|
||||
Expand model_out into your components
|
||||
@@ -92,7 +83,6 @@ class LightningModule(GradInformation, ModelIO, OptimizerConfig, ModelHooks):
|
||||
model_summary = ModelSummary(self)
|
||||
print(model_summary)
|
||||
|
||||
|
||||
def freeze(self):
|
||||
for param in self.parameters():
|
||||
param.requires_grad = False
|
||||
@@ -125,16 +115,6 @@ class LightningModule(GradInformation, ModelIO, OptimizerConfig, ModelHooks):
|
||||
"""
|
||||
raise NotImplementedError
|
||||
|
||||
@staticmethod
|
||||
def get_process_position(gpus):
|
||||
try:
|
||||
current_gpu = os.environ["CUDA_VISIBLE_DEVICES"]
|
||||
gpu_ids = gpus.split(',')
|
||||
process_position = gpu_ids.index(current_gpu)
|
||||
return process_position, current_gpu
|
||||
except Exception as e:
|
||||
return 0, 0
|
||||
|
||||
@classmethod
|
||||
def load_from_metrics(cls, weights_path, tags_csv, on_gpu, map_location=None):
|
||||
"""
|
||||
|
||||
@@ -0,0 +1,280 @@
|
||||
import os
|
||||
from collections import OrderedDict
|
||||
import torch.nn as nn
|
||||
from torchvision.datasets import MNIST
|
||||
import torchvision.transforms as transforms
|
||||
import torch
|
||||
import torch.nn.functional as F
|
||||
from test_tube import HyperOptArgumentParser
|
||||
from torch import optim
|
||||
from torch.utils.data import DataLoader
|
||||
from torch.utils.data.distributed import DistributedSampler
|
||||
|
||||
from pytorch_lightning.root_module.root_module import LightningModule
|
||||
|
||||
|
||||
class LightningTestModel(LightningModule):
|
||||
"""
|
||||
Sample model to show how to define a template
|
||||
"""
|
||||
|
||||
def __init__(self, hparams, force_remove_distributed_sampler=False):
|
||||
"""
|
||||
Pass in parsed HyperOptArgumentParser to the model
|
||||
:param hparams:
|
||||
"""
|
||||
# init superclass
|
||||
super(LightningTestModel, self).__init__(hparams)
|
||||
|
||||
self.batch_size = hparams.batch_size
|
||||
|
||||
# if you specify an example input, the summary will show input/output for each layer
|
||||
self.example_input_array = torch.rand(5, 28 * 28)
|
||||
|
||||
# remove to test warning for dist sampler
|
||||
self.force_remove_distributed_sampler = force_remove_distributed_sampler
|
||||
|
||||
# build model
|
||||
self.__build_model()
|
||||
|
||||
# ---------------------
|
||||
# MODEL SETUP
|
||||
# ---------------------
|
||||
def __build_model(self):
|
||||
"""
|
||||
Layout model
|
||||
:return:
|
||||
"""
|
||||
self.c_d1 = nn.Linear(in_features=self.hparams.in_features, out_features=self.hparams.hidden_dim)
|
||||
self.c_d1_bn = nn.BatchNorm1d(self.hparams.hidden_dim)
|
||||
self.c_d1_drop = nn.Dropout(self.hparams.drop_prob)
|
||||
|
||||
self.c_d2 = nn.Linear(in_features=self.hparams.hidden_dim, out_features=self.hparams.out_features)
|
||||
|
||||
# ---------------------
|
||||
# TRAINING
|
||||
# ---------------------
|
||||
def forward(self, x):
|
||||
"""
|
||||
No special modification required for lightning, define as you normally would
|
||||
:param x:
|
||||
:return:
|
||||
"""
|
||||
|
||||
x = self.c_d1(x)
|
||||
x = torch.tanh(x)
|
||||
x = self.c_d1_bn(x)
|
||||
x = self.c_d1_drop(x)
|
||||
|
||||
x = self.c_d2(x)
|
||||
logits = F.log_softmax(x, dim=1)
|
||||
|
||||
return logits
|
||||
|
||||
def loss(self, labels, logits):
|
||||
nll = F.nll_loss(logits, labels)
|
||||
return nll
|
||||
|
||||
def training_step(self, data_batch, batch_i):
|
||||
"""
|
||||
Lightning calls this inside the training loop
|
||||
:param data_batch:
|
||||
:return:
|
||||
"""
|
||||
# forward pass
|
||||
x, y = data_batch
|
||||
x = x.view(x.size(0), -1)
|
||||
|
||||
y_hat = self.forward(x)
|
||||
|
||||
# calculate loss
|
||||
loss_val = self.loss(y, y_hat)
|
||||
|
||||
# in DP mode (default) make sure if result is scalar, there's another dim in the beginning
|
||||
if self.trainer.use_dp:
|
||||
loss_val = loss_val.unsqueeze(0)
|
||||
|
||||
output = OrderedDict({
|
||||
'loss': loss_val
|
||||
})
|
||||
|
||||
# can also return just a scalar instead of a dict (return loss_val)
|
||||
return output
|
||||
|
||||
def validation_step(self, data_batch, batch_i):
|
||||
"""
|
||||
Lightning calls this inside the validation loop
|
||||
:param data_batch:
|
||||
:return:
|
||||
"""
|
||||
x, y = data_batch
|
||||
x = x.view(x.size(0), -1)
|
||||
y_hat = self.forward(x)
|
||||
|
||||
loss_val = self.loss(y, y_hat)
|
||||
|
||||
# acc
|
||||
labels_hat = torch.argmax(y_hat, dim=1)
|
||||
val_acc = torch.sum(y == labels_hat).item() / (len(y) * 1.0)
|
||||
val_acc = torch.tensor(val_acc)
|
||||
|
||||
if self.on_gpu:
|
||||
val_acc = val_acc.cuda(loss_val.device.index)
|
||||
|
||||
# in DP mode (default) make sure if result is scalar, there's another dim in the beginning
|
||||
if self.trainer.use_dp:
|
||||
loss_val = loss_val.unsqueeze(0)
|
||||
val_acc = val_acc.unsqueeze(0)
|
||||
|
||||
# alternate possible outputs to test
|
||||
if self.trainer.batch_nb % 1 == 0:
|
||||
output = OrderedDict({
|
||||
'val_loss': loss_val,
|
||||
'val_acc': val_acc,
|
||||
})
|
||||
return output
|
||||
if self.trainer.batch_nb % 2 == 0:
|
||||
return val_acc
|
||||
|
||||
if self.trainer.batch_nb % 3 == 0:
|
||||
output = OrderedDict({
|
||||
'val_loss': loss_val,
|
||||
'val_acc': val_acc,
|
||||
'test_dic': {'val_loss_a': loss_val}
|
||||
})
|
||||
return output
|
||||
|
||||
def validation_end(self, outputs):
|
||||
"""
|
||||
Called at the end of validation to aggregate outputs
|
||||
:param outputs: list of individual outputs of each validation step
|
||||
:return:
|
||||
"""
|
||||
# if returned a scalar from validation_step, outputs is a list of tensor scalars
|
||||
# we return just the average in this case (if we want)
|
||||
# return torch.stack(outputs).mean()
|
||||
|
||||
val_loss_mean = 0
|
||||
val_acc_mean = 0
|
||||
for output in outputs:
|
||||
val_loss_mean += output['val_loss']
|
||||
val_acc_mean += output['val_acc']
|
||||
|
||||
val_loss_mean /= len(outputs)
|
||||
val_acc_mean /= len(outputs)
|
||||
|
||||
tqdm_dic = {'val_loss': val_loss_mean.item(), 'val_acc': val_acc_mean.item()}
|
||||
return tqdm_dic
|
||||
|
||||
def on_tng_metrics(self, logs):
|
||||
logs['some_tensor_to_test'] = torch.rand(1)
|
||||
|
||||
# ---------------------
|
||||
# MODEL SAVING
|
||||
# ---------------------
|
||||
def get_save_dict(self):
|
||||
checkpoint = {'state_dict': self.state_dict()}
|
||||
return checkpoint
|
||||
|
||||
def load_model_specific(self, checkpoint):
|
||||
self.load_state_dict(checkpoint['state_dict'])
|
||||
pass
|
||||
|
||||
# ---------------------
|
||||
# TRAINING SETUP
|
||||
# ---------------------
|
||||
def configure_optimizers(self):
|
||||
"""
|
||||
return whatever optimizers we want here
|
||||
:return: list of optimizers
|
||||
"""
|
||||
optimizer = optim.Adam(self.parameters(), lr=self.hparams.learning_rate)
|
||||
return [optimizer]
|
||||
|
||||
def __dataloader(self, train):
|
||||
# init data generators
|
||||
transform = transforms.Compose([transforms.ToTensor(), transforms.Normalize((0.5,), (1.0,))])
|
||||
dataset = MNIST(root=self.hparams.data_root, train=train, transform=transform, download=True)
|
||||
|
||||
# when using multi-node we need to add the datasampler
|
||||
train_sampler = None
|
||||
batch_size = self.hparams.batch_size
|
||||
|
||||
try:
|
||||
if self.on_gpu and not self.force_remove_distributed_sampler:
|
||||
train_sampler = DistributedSampler(dataset, rank=self.trainer.proc_rank)
|
||||
batch_size = batch_size // self.trainer.world_size # scale batch size
|
||||
except Exception as e:
|
||||
pass
|
||||
|
||||
should_shuffle = train_sampler is None
|
||||
loader = DataLoader(
|
||||
dataset=dataset,
|
||||
batch_size=batch_size,
|
||||
shuffle=should_shuffle,
|
||||
sampler=train_sampler
|
||||
)
|
||||
|
||||
return loader
|
||||
|
||||
@property
|
||||
def tng_dataloader(self):
|
||||
if self._tng_dataloader is None:
|
||||
try:
|
||||
self._tng_dataloader = self.__dataloader(train=True)
|
||||
except Exception as e:
|
||||
print(e)
|
||||
raise e
|
||||
return self._tng_dataloader
|
||||
|
||||
@property
|
||||
def val_dataloader(self):
|
||||
if self._val_dataloader is None:
|
||||
try:
|
||||
self._val_dataloader = self.__dataloader(train=False)
|
||||
except Exception as e:
|
||||
print(e)
|
||||
raise e
|
||||
return self._val_dataloader
|
||||
|
||||
@property
|
||||
def test_dataloader(self):
|
||||
if self._test_dataloader is None:
|
||||
try:
|
||||
self._test_dataloader = self.__dataloader(train=False)
|
||||
except Exception as e:
|
||||
print(e)
|
||||
raise e
|
||||
return self._test_dataloader
|
||||
|
||||
@staticmethod
|
||||
def add_model_specific_args(parent_parser, root_dir):
|
||||
"""
|
||||
Parameters you define here will be available to your model through self.hparams
|
||||
:param parent_parser:
|
||||
:param root_dir:
|
||||
:return:
|
||||
"""
|
||||
parser = HyperOptArgumentParser(strategy=parent_parser.strategy, parents=[parent_parser])
|
||||
|
||||
# param overwrites
|
||||
# parser.set_defaults(gradient_clip=5.0)
|
||||
|
||||
# network params
|
||||
parser.opt_list('--drop_prob', default=0.2, options=[0.2, 0.5], type=float, tunable=False)
|
||||
parser.add_argument('--in_features', default=28*28, type=int)
|
||||
parser.add_argument('--out_features', default=10, type=int)
|
||||
parser.add_argument('--hidden_dim', default=50000, type=int) # use 500 for CPU, 50000 for GPU to see speed difference
|
||||
|
||||
# data
|
||||
parser.add_argument('--data_root', default=os.path.join(root_dir, 'mnist'), type=str)
|
||||
|
||||
# training params (opt)
|
||||
parser.opt_list('--learning_rate', default=0.001*8, type=float, options=[0.0001, 0.0005, 0.001, 0.005],
|
||||
tunable=False)
|
||||
parser.opt_list('--optimizer_name', default='adam', type=str, options=['adam'], tunable=False)
|
||||
|
||||
# if using 2 nodes with 4 gpus each the batch size here (256) will be 256 / (2*8) = 16 per gpu
|
||||
parser.opt_list('--batch_size', default=256*8, type=int, options=[32, 64, 128, 256], tunable=False,
|
||||
help='batch size will be divided over all the gpus being used across all nodes')
|
||||
return parser
|
||||
@@ -52,10 +52,6 @@ def main(hparams, cluster, results_dict):
|
||||
hparams.__setattr__('nb_gpus', torch.cuda.device_count())
|
||||
hparams.__setattr__('inference_mode', hparams.model_load_weights_path is not None)
|
||||
|
||||
# delay each training start to not overwrite logs
|
||||
process_position, current_gpu = TRAINING_MODEL.get_process_position(hparams.gpus)
|
||||
sleep(process_position + 1)
|
||||
|
||||
# init experiment
|
||||
exp = Experiment(
|
||||
name=hparams.tt_name,
|
||||
|
||||
@@ -0,0 +1,5 @@
|
||||
import pdb
|
||||
import sys
|
||||
|
||||
class MisconfigurationException(Exception):
|
||||
pass
|
||||
@@ -1,104 +0,0 @@
|
||||
import torch
|
||||
import numpy as np
|
||||
from copy import deepcopy
|
||||
|
||||
|
||||
class PretrainedEmbedding(torch.nn.Embedding):
|
||||
|
||||
def __init__(self, embedding_path, embedding_dim, task_vocab, freeze=True, *args, **kwargs):
|
||||
"""
|
||||
Loads a prebuilt pytorch embedding from any embedding formated file.
|
||||
Padding=0 by default.
|
||||
|
||||
>>> emb = PretrainedEmbedding(embedding_path='glove.840B.300d.txt',embedding_dim=300, task_vocab={'hello': 1, 'world': 2})
|
||||
>>> data = torch.Tensor([[0, 1], [0, 2]]).long()
|
||||
>>> embedded = emb(data)
|
||||
|
||||
|
||||
|
||||
:param embedding_path:
|
||||
:param emb_dim:
|
||||
:param task_vocab:
|
||||
:param freeze:
|
||||
:return:
|
||||
"""
|
||||
# count the vocab
|
||||
self.vocab_size = max(task_vocab.values()) + 1
|
||||
super(PretrainedEmbedding, self).__init__(self.vocab_size, embedding_dim, padding_idx=0, *args, **kwargs)
|
||||
|
||||
# load pretrained embeddings
|
||||
new_emb = self.__load_task_specific_embeddings(deepcopy(task_vocab), embedding_path, embedding_dim, freeze)
|
||||
|
||||
# transfer weights
|
||||
self.weight = new_emb.weight
|
||||
|
||||
# apply freeze
|
||||
should_freeze = not freeze
|
||||
self.weight.requires_grad = should_freeze
|
||||
|
||||
def __load_task_specific_embeddings(self, vocab_words, embedding_path, emb_dim, freeze):
|
||||
"""
|
||||
Iterates embedding file to only pull out task specific embeddings
|
||||
:param vocab_words:
|
||||
:param embedding_path:
|
||||
:param emb_dim:
|
||||
:param freeze:
|
||||
:return:
|
||||
"""
|
||||
|
||||
# holds final embeddings for relevant words
|
||||
embeddings = np.zeros(shape=(self.vocab_size, emb_dim))
|
||||
|
||||
# load embedding line by line and extract relevant embeddings
|
||||
with open(embedding_path, encoding='utf-8') as f:
|
||||
for line in f:
|
||||
tokens = line.split(' ')
|
||||
word = tokens[0]
|
||||
embedding = tokens[1:]
|
||||
embedding[-1] = embedding[-1][:-1] # remove last new line
|
||||
|
||||
if word in vocab_words:
|
||||
vocab_word_i = vocab_words[word]
|
||||
|
||||
# skip words that try to overwrite pad idx
|
||||
if vocab_word_i == 0:
|
||||
del vocab_words[word]
|
||||
continue
|
||||
|
||||
emb_vals = np.asarray([float(x) for x in embedding])
|
||||
embeddings[vocab_word_i] = emb_vals
|
||||
|
||||
# remove vocab word to early terminate
|
||||
del vocab_words[word]
|
||||
|
||||
# early break
|
||||
if len(vocab_words) == 0:
|
||||
break
|
||||
|
||||
# add random vectors for the non-pretrained words
|
||||
# these are vocab words NOT found in the pretrained embeddings
|
||||
for w, i in vocab_words.items():
|
||||
# skip words that try to overwrite pad idx
|
||||
if i == 0:
|
||||
continue
|
||||
|
||||
embedding = np.random.normal(size=emb_dim)
|
||||
embeddings[i] = embedding
|
||||
|
||||
# turn into pt embedding
|
||||
embeddings = torch.FloatTensor(embeddings)
|
||||
embeddings = torch.nn.Embedding.from_pretrained(embeddings, freeze=freeze)
|
||||
|
||||
return embeddings
|
||||
|
||||
|
||||
if __name__ == '__main__':
|
||||
emb = PretrainedEmbedding(
|
||||
embedding_path='/Users/waf/Developer',
|
||||
embedding_dim=300,
|
||||
task_vocab={'hello': 1, 'world': 2}
|
||||
)
|
||||
|
||||
data = torch.Tensor([[0, 1], [0, 2]]).long()
|
||||
embedded = emb(data)
|
||||
print(embedded)
|
||||
@@ -1,28 +0,0 @@
|
||||
import numpy as np
|
||||
np.seterr(divide='ignore', invalid='ignore')
|
||||
|
||||
|
||||
def plot_confusion_matrix(cm,
|
||||
save_path,
|
||||
normalize=False,
|
||||
title='Confusion matrix',
|
||||
ylabel='y',
|
||||
xlabel='x'):
|
||||
"""
|
||||
This function prints and plots the confusion matrix.
|
||||
Normalization can be applied by setting `normalize=True`.
|
||||
"""
|
||||
from matplotlib import pyplot as plt
|
||||
if normalize:
|
||||
cm = cm.astype('float') / cm.sum(axis=1)[:, np.newaxis]
|
||||
print("Normalized confusion matrix")
|
||||
else:
|
||||
print('Confusion matrix, without normalization')
|
||||
|
||||
fig = plt.figure()
|
||||
plt.matshow(cm)
|
||||
plt.title(title)
|
||||
plt.colorbar()
|
||||
plt.ylabel(ylabel)
|
||||
plt.xlabel(xlabel)
|
||||
plt.savefig(save_path)
|
||||
+4
-3
@@ -1,10 +1,11 @@
|
||||
|
||||
atomicwrites==1.2.1
|
||||
attrs==18.2.0
|
||||
certifi==2018.11.29
|
||||
cffi==1.11.5
|
||||
coverage==4.5.3
|
||||
imageio==2.4.1
|
||||
mkl-fft==1.0.6
|
||||
mkdocs==1.0.4
|
||||
mkl-random==1.0.2
|
||||
more-itertools==5.0.0
|
||||
numpy==1.15.4
|
||||
@@ -14,7 +15,7 @@ Pillow==5.3.0
|
||||
pluggy==0.8.0
|
||||
py==1.7.0
|
||||
pycparser==2.19
|
||||
pytest==4.0.2
|
||||
pytest==5.0.1
|
||||
python-dateutil==2.7.5
|
||||
pytz==2018.7
|
||||
scikit-learn==0.20.2
|
||||
@@ -25,7 +26,7 @@ tensorboard==1.14.0
|
||||
tensorboardX==1.7
|
||||
tensorflow==1.14.0
|
||||
test-tube==0.643
|
||||
torch==1.0.0
|
||||
torch==1.1.0
|
||||
torchvision==0.2.1
|
||||
tqdm==4.32.1
|
||||
twine==1.13.0
|
||||
|
||||
@@ -16,6 +16,33 @@ markers =
|
||||
ignore = E731,W504
|
||||
max-line-length = 120
|
||||
|
||||
[coverage:report]
|
||||
exclude_lines =
|
||||
pragma: no cover
|
||||
def __repr__
|
||||
if self.debug:
|
||||
if settings.DEBUG
|
||||
raise AssertionError
|
||||
raise NotImplementedError
|
||||
if 0:
|
||||
if __name__ == .__main__.:
|
||||
except Exception as e
|
||||
print(e)
|
||||
print(traceback.print_exc())
|
||||
return *
|
||||
raise Exception
|
||||
warnings
|
||||
print
|
||||
raise RuntimeError
|
||||
break
|
||||
pass
|
||||
os.makedirs
|
||||
|
||||
omit =
|
||||
pytorch_lightning/callbacks/pt_callbacks.py
|
||||
tests/test_models.py
|
||||
pytorch_lightning/testing_models/lm_test_module.py
|
||||
|
||||
[flake8]
|
||||
ignore = E731,W504,F401,F841
|
||||
max-line-length = 120
|
||||
|
||||
@@ -0,0 +1,46 @@
|
||||
# Pytorch-Lightning Tests
|
||||
|
||||
## Running tests
|
||||
|
||||
To run all tests do the following:
|
||||
```bash
|
||||
git clone https://github.com/williamFalcon/pytorch-lightning
|
||||
cd pytorch-lightning
|
||||
|
||||
# install module locally
|
||||
pip install -e .
|
||||
|
||||
# install dev deps
|
||||
pip install -r requirements.txt
|
||||
|
||||
# run tests
|
||||
py.test
|
||||
|
||||
# or to generate coverage
|
||||
pip install coverage
|
||||
coverage run tests/test_models.py
|
||||
```
|
||||
|
||||
To test models that require GPU make sure to run the above command on a GPU machine.
|
||||
The GPU machine must have:
|
||||
1. At least 2 GPUs.
|
||||
2. [NVIDIA-apex](https://github.com/NVIDIA/apex#linux) installed.
|
||||
|
||||
|
||||
### test_models.py
|
||||
This file fits a tiny model on MNIST using these different set-ups.
|
||||
1. CPU only.
|
||||
2. Single GPU with DP.
|
||||
3. Multiple (2) GPUs using DP.
|
||||
3. Multiple (2) GPUs using DDP.
|
||||
3. Multiple (2) GPUs using DP + apex (for 16-bit precision).
|
||||
3. Multiple (2) GPUs using DDP + apex (for 16-bit precision).
|
||||
|
||||
For each set up it also tests:
|
||||
1. model saving.
|
||||
2. model loading.
|
||||
3. predicting with a loaded model.
|
||||
4. simulated save from HPC signal.
|
||||
5. simulated load from HPC signal.
|
||||
|
||||
|
||||
+142
@@ -0,0 +1,142 @@
|
||||
import pytest
|
||||
from pytorch_lightning import Trainer
|
||||
from pytorch_lightning.examples.new_project_templates.lightning_module_template import LightningTemplateModel
|
||||
from argparse import Namespace
|
||||
from test_tube import Experiment
|
||||
from pytorch_lightning.callbacks import ModelCheckpoint
|
||||
import numpy as np
|
||||
import warnings
|
||||
import torch
|
||||
import os
|
||||
import shutil
|
||||
import pdb
|
||||
|
||||
|
||||
def get_model():
|
||||
# set up model with these hyperparams
|
||||
root_dir = os.path.dirname(os.path.realpath(__file__))
|
||||
hparams = Namespace(**{'drop_prob': 0.2,
|
||||
'batch_size': 32,
|
||||
'in_features': 28*28,
|
||||
'learning_rate': 0.001*8,
|
||||
'optimizer_name': 'adam',
|
||||
'data_root': os.path.join(root_dir, 'mnist'),
|
||||
'out_features': 10,
|
||||
'hidden_dim': 1000})
|
||||
model = LightningTemplateModel(hparams)
|
||||
|
||||
return model, hparams
|
||||
|
||||
|
||||
def get_exp(debug=True):
|
||||
# set up exp object without actually saving logs
|
||||
root_dir = os.path.dirname(os.path.realpath(__file__))
|
||||
exp = Experiment(debug=debug, save_dir=root_dir, name='tests_tt_dir')
|
||||
return exp
|
||||
|
||||
|
||||
def init_save_dir():
|
||||
root_dir = os.path.dirname(os.path.realpath(__file__))
|
||||
save_dir = os.path.join(root_dir, 'save_dir')
|
||||
|
||||
if os.path.exists(save_dir):
|
||||
shutil.rmtree(save_dir)
|
||||
|
||||
os.makedirs(save_dir, exist_ok=True)
|
||||
|
||||
return save_dir
|
||||
|
||||
|
||||
def clear_save_dir():
|
||||
root_dir = os.path.dirname(os.path.realpath(__file__))
|
||||
save_dir = os.path.join(root_dir, 'save_dir')
|
||||
if os.path.exists(save_dir):
|
||||
shutil.rmtree(save_dir)
|
||||
|
||||
|
||||
def load_model(exp, save_dir):
|
||||
|
||||
# load trained model
|
||||
tags_path = exp.get_data_path(exp.name, exp.version)
|
||||
tags_path = os.path.join(tags_path, 'meta_tags.csv')
|
||||
|
||||
checkpoints = [x for x in os.listdir(save_dir) if '.ckpt' in x]
|
||||
weights_dir = os.path.join(save_dir, checkpoints[0])
|
||||
|
||||
trained_model = LightningTemplateModel.load_from_metrics(weights_path=weights_dir, tags_csv=tags_path, on_gpu=True)
|
||||
|
||||
assert trained_model is not None, 'loading model failed'
|
||||
|
||||
return trained_model
|
||||
|
||||
|
||||
def run_prediction(dataloader, trained_model):
|
||||
# run prediction on 1 batch
|
||||
for batch in dataloader:
|
||||
break
|
||||
|
||||
x, y = batch
|
||||
x = x.view(x.size(0), -1)
|
||||
|
||||
y_hat = trained_model(x)
|
||||
|
||||
# acc
|
||||
labels_hat = torch.argmax(y_hat, dim=1)
|
||||
val_acc = torch.sum(y == labels_hat).item() / (len(y) * 1.0)
|
||||
val_acc = torch.tensor(val_acc)
|
||||
val_acc = val_acc.item()
|
||||
|
||||
print(val_acc)
|
||||
|
||||
assert val_acc > 0.70, f'this model is expected to get > 0.7 in test set (it got {val_acc})'
|
||||
|
||||
|
||||
def mainasdf():
|
||||
|
||||
save_dir = init_save_dir()
|
||||
model, hparams = get_model()
|
||||
|
||||
# exp file to get meta
|
||||
exp = get_exp(False)
|
||||
exp.argparse(hparams)
|
||||
exp.save()
|
||||
|
||||
# exp file to get weights
|
||||
checkpoint = ModelCheckpoint(save_dir)
|
||||
|
||||
trainer = Trainer(
|
||||
experiment=exp,
|
||||
checkpoint_callback=checkpoint,
|
||||
progress_bar=True,
|
||||
max_nb_epochs=1,
|
||||
gpus=[0, 1],
|
||||
distributed_backend='dp',
|
||||
use_amp=True
|
||||
)
|
||||
|
||||
result = trainer.fit(model)
|
||||
|
||||
# correct result and ok accuracy
|
||||
assert result == 1, 'amp + ddp model failed to complete'
|
||||
|
||||
# test model loading
|
||||
pretrained_model = load_model(exp, save_dir)
|
||||
|
||||
# test model preds
|
||||
run_prediction(model.test_dataloader, pretrained_model)
|
||||
|
||||
clear_save_dir()
|
||||
|
||||
|
||||
|
||||
|
||||
if __name__ == '__main__':
|
||||
import subprocess
|
||||
import re
|
||||
|
||||
print('getting pid')
|
||||
command = "lsof -i :%s | awk '{print $2}'" % 12910
|
||||
pids = subprocess.check_output(command, shell=True)
|
||||
pids = pids.strip()
|
||||
|
||||
print(len(pids))
|
||||
@@ -0,0 +1,506 @@
|
||||
import pytest
|
||||
from pytorch_lightning import Trainer
|
||||
from pytorch_lightning.examples.new_project_templates.lightning_module_template import LightningTemplateModel
|
||||
from pytorch_lightning.testing_models.lm_test_module import LightningTestModel
|
||||
from argparse import Namespace
|
||||
from test_tube import Experiment
|
||||
from pytorch_lightning.callbacks import ModelCheckpoint, EarlyStopping
|
||||
from pytorch_lightning.utils.debugging import MisconfigurationException
|
||||
from pytorch_lightning.root_module import memory
|
||||
from pytorch_lightning.models.trainer import reduce_distributed_output
|
||||
import numpy as np
|
||||
import warnings
|
||||
import torch
|
||||
import os
|
||||
import shutil
|
||||
|
||||
SEED = 2334
|
||||
torch.manual_seed(SEED)
|
||||
np.random.seed(SEED)
|
||||
|
||||
|
||||
# ------------------------------------------------------------------------
|
||||
# TESTS
|
||||
# ------------------------------------------------------------------------
|
||||
def test_dp_output_reduce():
|
||||
|
||||
# test identity when we have a single gpu
|
||||
out = torch.rand(3, 1)
|
||||
assert reduce_distributed_output(out, nb_gpus=1) is out
|
||||
|
||||
# average when we have multiples
|
||||
assert reduce_distributed_output(out, nb_gpus=2) == out.mean()
|
||||
|
||||
# when we have a dict of vals
|
||||
out = {
|
||||
'a': out,
|
||||
'b': {
|
||||
'c': out
|
||||
}
|
||||
}
|
||||
reduced = reduce_distributed_output(out, nb_gpus=3)
|
||||
assert reduced['a'] == out['a']
|
||||
assert reduced['b']['c'] == out['b']['c']
|
||||
|
||||
|
||||
def test_amp_gpu_ddp_slurm_managed():
|
||||
"""
|
||||
Make sure DDP + AMP work
|
||||
:return:
|
||||
"""
|
||||
if not torch.cuda.is_available():
|
||||
warnings.warn('test_amp_gpu_ddp cannot run. Rerun on a GPU node to run this test')
|
||||
return
|
||||
if not torch.cuda.device_count() > 1:
|
||||
warnings.warn('test_amp_gpu_ddp cannot run. Rerun on a node with 2+ GPUs to run this test')
|
||||
return
|
||||
|
||||
os.environ['MASTER_PORT'] = str(np.random.randint(12000, 19000, 1)[0])
|
||||
|
||||
hparams = get_hparams()
|
||||
model = LightningTestModel(hparams)
|
||||
|
||||
trainer_options = dict(
|
||||
progress_bar=True,
|
||||
max_nb_epochs=1,
|
||||
gpus=[0],
|
||||
distributed_backend='ddp',
|
||||
use_amp=True
|
||||
)
|
||||
|
||||
save_dir = init_save_dir()
|
||||
|
||||
# exp file to get meta
|
||||
exp = get_exp(False)
|
||||
exp.argparse(hparams)
|
||||
exp.save()
|
||||
|
||||
# exp file to get weights
|
||||
checkpoint = ModelCheckpoint(save_dir)
|
||||
|
||||
# add these to the trainer options
|
||||
trainer_options['checkpoint_callback'] = checkpoint
|
||||
trainer_options['experiment'] = exp
|
||||
|
||||
# fit model
|
||||
trainer = Trainer(**trainer_options)
|
||||
trainer.is_slurm_managing_tasks = True
|
||||
result = trainer.fit(model)
|
||||
|
||||
# correct result and ok accuracy
|
||||
assert result == 1, 'amp + ddp model failed to complete'
|
||||
|
||||
# test root model address
|
||||
assert trainer.resolve_root_node_address('abc') == 'abc'
|
||||
assert trainer.resolve_root_node_address('abc[23]') == 'abc23'
|
||||
assert trainer.resolve_root_node_address('abc[23-24]') == 'abc23'
|
||||
assert trainer.resolve_root_node_address('abc[23-24, 45-40, 40]') == 'abc23'
|
||||
|
||||
# test model loading with a map_location
|
||||
map_location = 'cuda:1'
|
||||
pretrained_model = load_model(exp, save_dir, True, map_location)
|
||||
|
||||
# test model preds
|
||||
run_prediction(model.test_dataloader, pretrained_model)
|
||||
|
||||
if trainer.use_ddp:
|
||||
# on hpc this would work fine... but need to hack it for the purpose of the test
|
||||
trainer.model = pretrained_model
|
||||
trainer.optimizers = pretrained_model.configure_optimizers()
|
||||
|
||||
# test HPC loading / saving
|
||||
trainer.hpc_save(save_dir, exp)
|
||||
trainer.hpc_load(save_dir, on_gpu=True)
|
||||
|
||||
# test freeze on gpu
|
||||
model.freeze()
|
||||
model.unfreeze()
|
||||
|
||||
clear_save_dir()
|
||||
|
||||
|
||||
def test_early_stopping_cpu_model():
|
||||
"""
|
||||
Test each of the trainer options
|
||||
:return:
|
||||
"""
|
||||
|
||||
stopping = EarlyStopping()
|
||||
trainer_options = dict(
|
||||
early_stop_callback=stopping,
|
||||
gradient_clip=1.0,
|
||||
overfit_pct=0.20,
|
||||
track_grad_norm=2,
|
||||
print_nan_grads=True,
|
||||
progress_bar=False,
|
||||
experiment=get_exp(),
|
||||
train_percent_check=0.1,
|
||||
val_percent_check=0.1
|
||||
)
|
||||
|
||||
model, hparams = get_model()
|
||||
run_gpu_model_test(trainer_options, model, hparams, on_gpu=False)
|
||||
|
||||
# test freeze on cpu
|
||||
model.freeze()
|
||||
model.unfreeze()
|
||||
|
||||
|
||||
def test_cpu_model_with_amp():
|
||||
"""
|
||||
Make sure model trains on CPU
|
||||
:return:
|
||||
"""
|
||||
|
||||
trainer_options = dict(
|
||||
progress_bar=False,
|
||||
experiment=get_exp(),
|
||||
max_nb_epochs=1,
|
||||
train_percent_check=0.4,
|
||||
val_percent_check=0.4,
|
||||
use_amp=True
|
||||
)
|
||||
|
||||
model, hparams = get_model()
|
||||
|
||||
with pytest.raises(MisconfigurationException):
|
||||
run_gpu_model_test(trainer_options, model, hparams, on_gpu=False)
|
||||
|
||||
|
||||
def test_cpu_model():
|
||||
"""
|
||||
Make sure model trains on CPU
|
||||
:return:
|
||||
"""
|
||||
|
||||
trainer_options = dict(
|
||||
progress_bar=False,
|
||||
experiment=get_exp(),
|
||||
max_nb_epochs=1,
|
||||
train_percent_check=0.4,
|
||||
val_percent_check=0.4
|
||||
)
|
||||
|
||||
model, hparams = get_model()
|
||||
|
||||
run_gpu_model_test(trainer_options, model, hparams, on_gpu=False)
|
||||
|
||||
|
||||
def test_all_features_cpu_model():
|
||||
"""
|
||||
Test each of the trainer options
|
||||
:return:
|
||||
"""
|
||||
|
||||
trainer_options = dict(
|
||||
gradient_clip=1.0,
|
||||
overfit_pct=0.20,
|
||||
track_grad_norm=2,
|
||||
print_nan_grads=True,
|
||||
progress_bar=False,
|
||||
experiment=get_exp(),
|
||||
max_nb_epochs=1,
|
||||
train_percent_check=0.4,
|
||||
val_percent_check=0.4
|
||||
)
|
||||
|
||||
model, hparams = get_model()
|
||||
run_gpu_model_test(trainer_options, model, hparams, on_gpu=False)
|
||||
|
||||
|
||||
def test_single_gpu_model():
|
||||
"""
|
||||
Make sure single GPU works (DP mode)
|
||||
:return:
|
||||
"""
|
||||
if not torch.cuda.is_available():
|
||||
warnings.warn('test_single_gpu_model cannot run. Rerun on a GPU node to run this test')
|
||||
return
|
||||
model, hparams = get_model()
|
||||
|
||||
trainer_options = dict(
|
||||
progress_bar=False,
|
||||
max_nb_epochs=1,
|
||||
train_percent_check=0.1,
|
||||
val_percent_check=0.1,
|
||||
gpus=[0]
|
||||
)
|
||||
|
||||
run_gpu_model_test(trainer_options, model, hparams)
|
||||
|
||||
|
||||
def test_multi_gpu_model_dp():
|
||||
"""
|
||||
Make sure DP works
|
||||
:return:
|
||||
"""
|
||||
if not torch.cuda.is_available():
|
||||
warnings.warn('test_multi_gpu_model_dp cannot run. Rerun on a GPU node to run this test')
|
||||
return
|
||||
if not torch.cuda.device_count() > 1:
|
||||
warnings.warn('test_multi_gpu_model_dp cannot run. Rerun on a node with 2+ GPUs to run this test')
|
||||
return
|
||||
model, hparams = get_model()
|
||||
trainer_options = dict(
|
||||
progress_bar=False,
|
||||
max_nb_epochs=1,
|
||||
train_percent_check=0.1,
|
||||
val_percent_check=0.1,
|
||||
gpus='-1'
|
||||
)
|
||||
|
||||
run_gpu_model_test(trainer_options, model, hparams)
|
||||
|
||||
# test memory helper functions
|
||||
memory.get_gpu_memory_map()
|
||||
|
||||
|
||||
def test_amp_gpu_dp():
|
||||
"""
|
||||
Make sure DP + AMP work
|
||||
:return:
|
||||
"""
|
||||
if not torch.cuda.is_available():
|
||||
warnings.warn('test_amp_gpu_dp cannot run. Rerun on a GPU node to run this test')
|
||||
return
|
||||
if not torch.cuda.device_count() > 1:
|
||||
warnings.warn('test_amp_gpu_dp cannot run. Rerun on a node with 2+ GPUs to run this test')
|
||||
return
|
||||
model, hparams = get_model()
|
||||
trainer_options = dict(
|
||||
max_nb_epochs=1,
|
||||
gpus='0, 1', # test init with gpu string
|
||||
distributed_backend='dp',
|
||||
use_amp=True
|
||||
)
|
||||
with pytest.raises(MisconfigurationException):
|
||||
run_gpu_model_test(trainer_options, model, hparams)
|
||||
|
||||
|
||||
def test_multi_gpu_model_ddp():
|
||||
"""
|
||||
Make sure DDP works
|
||||
:return:
|
||||
"""
|
||||
if not torch.cuda.is_available():
|
||||
warnings.warn('test_multi_gpu_model_ddp cannot run. Rerun on a GPU node to run this test')
|
||||
return
|
||||
if not torch.cuda.device_count() > 1:
|
||||
warnings.warn('test_multi_gpu_model_ddp cannot run. Rerun on a node with 2+ GPUs to run this test')
|
||||
return
|
||||
|
||||
os.environ['MASTER_PORT'] = str(np.random.randint(12000, 19000, 1)[0])
|
||||
model, hparams = get_model()
|
||||
trainer_options = dict(
|
||||
progress_bar=False,
|
||||
max_nb_epochs=1,
|
||||
train_percent_check=0.4,
|
||||
val_percent_check=0.2,
|
||||
gpus=[0, 1],
|
||||
distributed_backend='ddp'
|
||||
)
|
||||
|
||||
run_gpu_model_test(trainer_options, model, hparams)
|
||||
|
||||
|
||||
def test_amp_gpu_ddp():
|
||||
"""
|
||||
Make sure DDP + AMP work
|
||||
:return:
|
||||
"""
|
||||
if not torch.cuda.is_available():
|
||||
warnings.warn('test_amp_gpu_ddp cannot run. Rerun on a GPU node to run this test')
|
||||
return
|
||||
if not torch.cuda.device_count() > 1:
|
||||
warnings.warn('test_amp_gpu_ddp cannot run. Rerun on a node with 2+ GPUs to run this test')
|
||||
return
|
||||
|
||||
os.environ['MASTER_PORT'] = str(np.random.randint(12000, 19000, 1)[0])
|
||||
|
||||
hparams = get_hparams()
|
||||
model = LightningTestModel(hparams)
|
||||
|
||||
trainer_options = dict(
|
||||
progress_bar=True,
|
||||
max_nb_epochs=1,
|
||||
gpus=[0, 1],
|
||||
distributed_backend='ddp',
|
||||
use_amp=True
|
||||
)
|
||||
|
||||
run_gpu_model_test(trainer_options, model, hparams)
|
||||
|
||||
|
||||
def test_ddp_sampler_error():
|
||||
"""
|
||||
Make sure DDP + AMP work
|
||||
:return:
|
||||
"""
|
||||
if not torch.cuda.is_available():
|
||||
warnings.warn('test_amp_gpu_ddp cannot run. Rerun on a GPU node to run this test')
|
||||
return
|
||||
if not torch.cuda.device_count() > 1:
|
||||
warnings.warn('test_amp_gpu_ddp cannot run. Rerun on a node with 2+ GPUs to run this test')
|
||||
return
|
||||
|
||||
os.environ['MASTER_PORT'] = str(np.random.randint(12000, 19000, 1)[0])
|
||||
|
||||
hparams = get_hparams()
|
||||
model = LightningTestModel(hparams, force_remove_distributed_sampler=True)
|
||||
|
||||
exp = get_exp(True)
|
||||
exp.save()
|
||||
|
||||
trainer = Trainer(
|
||||
experiment=exp,
|
||||
progress_bar=False,
|
||||
max_nb_epochs=1,
|
||||
gpus=[0, 1],
|
||||
distributed_backend='ddp',
|
||||
use_amp=True
|
||||
)
|
||||
|
||||
with pytest.raises(MisconfigurationException):
|
||||
trainer.get_dataloaders(model)
|
||||
|
||||
clear_save_dir()
|
||||
|
||||
|
||||
# ------------------------------------------------------------------------
|
||||
# UTILS
|
||||
# ------------------------------------------------------------------------
|
||||
def run_gpu_model_test(trainer_options, model, hparams, on_gpu=True):
|
||||
save_dir = init_save_dir()
|
||||
|
||||
# exp file to get meta
|
||||
exp = get_exp(False)
|
||||
exp.argparse(hparams)
|
||||
exp.save()
|
||||
|
||||
# exp file to get weights
|
||||
checkpoint = ModelCheckpoint(save_dir)
|
||||
|
||||
# add these to the trainer options
|
||||
trainer_options['checkpoint_callback'] = checkpoint
|
||||
trainer_options['experiment'] = exp
|
||||
|
||||
# fit model
|
||||
trainer = Trainer(**trainer_options)
|
||||
result = trainer.fit(model)
|
||||
|
||||
# correct result and ok accuracy
|
||||
assert result == 1, 'amp + ddp model failed to complete'
|
||||
|
||||
# test model loading
|
||||
pretrained_model = load_model(exp, save_dir, on_gpu)
|
||||
|
||||
# test model preds
|
||||
run_prediction(model.test_dataloader, pretrained_model)
|
||||
|
||||
if trainer.use_ddp:
|
||||
# on hpc this would work fine... but need to hack it for the purpose of the test
|
||||
trainer.model = pretrained_model
|
||||
trainer.optimizers = pretrained_model.configure_optimizers()
|
||||
|
||||
# test HPC loading / saving
|
||||
trainer.hpc_save(save_dir, exp)
|
||||
trainer.hpc_load(save_dir, on_gpu=on_gpu)
|
||||
|
||||
clear_save_dir()
|
||||
|
||||
|
||||
def get_hparams():
|
||||
root_dir = os.path.dirname(os.path.realpath(__file__))
|
||||
hparams = Namespace(**{'drop_prob': 0.2,
|
||||
'batch_size': 32,
|
||||
'in_features': 28*28,
|
||||
'learning_rate': 0.001*8,
|
||||
'optimizer_name': 'adam',
|
||||
'data_root': os.path.join(root_dir, 'mnist'),
|
||||
'out_features': 10,
|
||||
'hidden_dim': 1000})
|
||||
return hparams
|
||||
|
||||
|
||||
def get_model():
|
||||
# set up model with these hyperparams
|
||||
hparams = get_hparams()
|
||||
model = LightningTemplateModel(hparams)
|
||||
|
||||
return model, hparams
|
||||
|
||||
|
||||
def get_exp(debug=True):
|
||||
# set up exp object without actually saving logs
|
||||
root_dir = os.path.dirname(os.path.realpath(__file__))
|
||||
exp = Experiment(debug=debug, save_dir=root_dir, name='tests_tt_dir')
|
||||
return exp
|
||||
|
||||
|
||||
def init_save_dir():
|
||||
root_dir = os.path.dirname(os.path.realpath(__file__))
|
||||
save_dir = os.path.join(root_dir, 'save_dir')
|
||||
|
||||
if os.path.exists(save_dir):
|
||||
shutil.rmtree(save_dir)
|
||||
|
||||
os.makedirs(save_dir, exist_ok=True)
|
||||
|
||||
return save_dir
|
||||
|
||||
|
||||
def clear_save_dir():
|
||||
root_dir = os.path.dirname(os.path.realpath(__file__))
|
||||
save_dir = os.path.join(root_dir, 'save_dir')
|
||||
if os.path.exists(save_dir):
|
||||
shutil.rmtree(save_dir)
|
||||
|
||||
|
||||
def load_model(exp, save_dir, on_gpu, map_location=None):
|
||||
|
||||
# load trained model
|
||||
tags_path = exp.get_data_path(exp.name, exp.version)
|
||||
tags_path = os.path.join(tags_path, 'meta_tags.csv')
|
||||
|
||||
checkpoints = [x for x in os.listdir(save_dir) if '.ckpt' in x]
|
||||
weights_dir = os.path.join(save_dir, checkpoints[0])
|
||||
|
||||
trained_model = LightningTemplateModel.load_from_metrics(weights_path=weights_dir,
|
||||
tags_csv=tags_path,
|
||||
on_gpu=on_gpu,
|
||||
map_location=map_location)
|
||||
|
||||
assert trained_model is not None, 'loading model failed'
|
||||
|
||||
return trained_model
|
||||
|
||||
|
||||
def run_prediction(dataloader, trained_model):
|
||||
# run prediction on 1 batch
|
||||
for batch in dataloader:
|
||||
break
|
||||
|
||||
x, y = batch
|
||||
x = x.view(x.size(0), -1)
|
||||
|
||||
y_hat = trained_model(x)
|
||||
|
||||
# acc
|
||||
labels_hat = torch.argmax(y_hat, dim=1)
|
||||
val_acc = torch.sum(y == labels_hat).item() / (len(y) * 1.0)
|
||||
val_acc = torch.tensor(val_acc)
|
||||
val_acc = val_acc.item()
|
||||
|
||||
print(val_acc)
|
||||
|
||||
assert val_acc > 0.50, f'this model is expected to get > 0.50 in test set (it got {val_acc})'
|
||||
|
||||
|
||||
def assert_ok_acc(trainer):
|
||||
# this model should get 0.80+ acc
|
||||
acc = trainer.tng_tqdm_dic['val_acc']
|
||||
assert acc > 0.50, f'model failed to get expected 0.50 validation accuracy. Got: {acc}'
|
||||
|
||||
|
||||
if __name__ == '__main__':
|
||||
pytest.main([__file__])
|
||||
Reference in New Issue
Block a user