Merge pull request #16 from williamFalcon/tests

Tests
This commit is contained in:
William Falcon
2019-07-24 20:41:12 -04:00
committed by GitHub
21 changed files with 1178 additions and 294 deletions
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+1
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@@ -0,0 +1 @@
from .new_project_templates.lightning_module_template import LightningTemplateModel
@@ -28,6 +28,9 @@ class LightningTemplateModel(LightningModule):
self.batch_size = hparams.batch_size
# if you specify an example input, the summary will show input/output for each layer
self.example_input_array = torch.rand(5, 28 * 28)
# build model
self.__build_model()
@@ -78,11 +81,16 @@ class LightningTemplateModel(LightningModule):
# forward pass
x, y = data_batch
x = x.view(x.size(0), -1)
y_hat = self.forward(x)
# calculate loss
loss_val = self.loss(y, y_hat)
# in DP mode (default) make sure if result is scalar, there's another dim in the beginning
if self.trainer.use_dp:
loss_val = loss_val.unsqueeze(0)
output = OrderedDict({
'loss': loss_val
})
@@ -105,10 +113,19 @@ class LightningTemplateModel(LightningModule):
# acc
labels_hat = torch.argmax(y_hat, dim=1)
val_acc = torch.sum(y == labels_hat).item() / (len(y) * 1.0)
val_acc = torch.tensor(val_acc)
if self.on_gpu:
val_acc = val_acc.cuda(loss_val.device.index)
# in DP mode (default) make sure if result is scalar, there's another dim in the beginning
if self.trainer.use_dp:
loss_val = loss_val.unsqueeze(0)
val_acc = val_acc.unsqueeze(0)
output = OrderedDict({
'val_loss': loss_val,
'val_acc': torch.tensor(val_acc).cuda(loss_val.device.index),
'val_acc': val_acc,
})
# can also return just a scalar instead of a dict (return loss_val)
@@ -135,9 +152,6 @@ class LightningTemplateModel(LightningModule):
tqdm_dic = {'val_loss': val_loss_mean.item(), 'val_acc': val_acc_mean.item()}
return tqdm_dic
def update_tng_log_metrics(self, logs):
return logs
# ---------------------
# MODEL SAVING
# ---------------------
@@ -217,7 +231,7 @@ class LightningTemplateModel(LightningModule):
return self._test_dataloader
@staticmethod
def add_model_specific_args(parent_parser, root_dir):
def add_model_specific_args(parent_parser, root_dir): # pragma: no cover
"""
Parameters you define here will be available to your model through self.hparams
:param parent_parser:
+67 -51
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@@ -19,12 +19,12 @@ import tqdm
from pytorch_lightning.root_module.memory import get_gpu_memory_map
from pytorch_lightning.root_module.model_saving import TrainerIO
from pytorch_lightning.pt_overrides.override_data_parallel import LightningDistributedDataParallel, LightningDataParallel
from pytorch_lightning.utils.debugging import MisconfigurationException
try:
from apex import amp
APEX_AVAILABLE = True
except ModuleNotFoundError:
except ModuleNotFoundError: # pragma: no cover
APEX_AVAILABLE = False
@@ -114,6 +114,7 @@ class Trainer(TrainerIO):
"""
# Transfer params
self.nb_gpu_nodes = nb_gpu_nodes
self.gradient_clip = gradient_clip
self.check_val_every_n_epoch = check_val_every_n_epoch
@@ -150,6 +151,16 @@ class Trainer(TrainerIO):
self.use_ddp = False
self.use_dp = False
# training bookeeping
self.total_batch_nb = 0
self.running_loss = []
self.avg_loss = 0
self.batch_nb = 0
self.tqdm_metrics = {}
self.nb_val_batches = None
self.nb_tng_batches = None
self.nb_test_batches = None
# gpus come in as a string.
# if gpus = -1 then use all available devices
@@ -178,7 +189,7 @@ class Trainer(TrainerIO):
self.use_ddp = distributed_backend == 'ddp'
# use ddp automatically if nb_gpu_nodes > 1
if nb_gpu_nodes > 1 and self.use_dp:
if nb_gpu_nodes > 1 and self.use_dp: # pragma: no cover
self.use_ddp = True
self.use_dp = False
w = 'DataParallel does not support nb_gpu_nodes > 1. ' \
@@ -186,6 +197,19 @@ class Trainer(TrainerIO):
'To silence this warning set distributed_backend=ddp'
warnings.warn(w)
# extract SLURM flag vars
# whenever we have the correct number of tasks, we let slurm manage processes
# otherwise we launch the required number of processes
if self.use_ddp:
self.nb_requested_gpus = len(self.data_parallel_device_ids) * self.nb_gpu_nodes
self.nb_slurm_tasks = 0
try:
self.nb_slurm_tasks = int(os.environ['SLURM_NTASKS'])
self.is_slurm_managing_tasks = self.nb_slurm_tasks == self.nb_requested_gpus
except Exception as e:
# likely not on slurm, so set the slurm managed flag to false
self.is_slurm_managing_tasks = False
# process info
self.proc_rank = 0
@@ -215,7 +239,7 @@ class Trainer(TrainerIO):
if self.use_amp:
print('using 16bit precision')
if use_amp and not APEX_AVAILABLE:
if use_amp and not APEX_AVAILABLE: # pragma: no cover
msg = '''
You set use_amp=True but do not have apex installed.
Install apex first using this guide and rerun with use_amp=True:
@@ -223,7 +247,7 @@ class Trainer(TrainerIO):
this run will NOT use 16 bit precision
'''
warnings.warn(msg)
raise ModuleNotFoundError(msg)
@property
def data_parallel(self):
@@ -251,6 +275,7 @@ class Trainer(TrainerIO):
@property
def __tng_tqdm_dic(self):
# ForkedPdb().set_trace()
tqdm_dic = {
'tng_loss': '{0:.3f}'.format(self.avg_loss),
'v_nb': '{}'.format(self.experiment.version),
@@ -264,13 +289,15 @@ class Trainer(TrainerIO):
return tqdm_dic
@property
def tng_tqdm_dic(self):
"""
Read-only for tqdm metrics
:return:
"""
return self.__tng_tqdm_dic
def __layout_bookeeping(self):
# training bookeeping
self.total_batch_nb = 0
self.running_loss = []
self.avg_loss = 0
self.batch_nb = 0
self.tqdm_metrics = {}
# determine number of training batches
self.nb_tng_batches = len(self.tng_dataloader)
@@ -317,7 +344,7 @@ class Trainer(TrainerIO):
# run training
for batch_i, data_batch in enumerate(dataloader):
if data_batch is None:
if data_batch is None: # pragma: no cover
continue
# stop short when on fast dev run
@@ -356,7 +383,7 @@ class Trainer(TrainerIO):
return val_results
def __get_dataloaders(self, model):
def get_dataloaders(self, model):
"""
Dataloaders are provided by the model
:param model:
@@ -379,7 +406,7 @@ class Trainer(TrainerIO):
dist_sampler = torch.utils.data.distributed.DistributedSampler(dataset)
dataloader = Dataloader(dataset, sampler=dist_sampler)
'''
raise Exception(msg)
raise MisconfigurationException(msg)
# -----------------------------
# MODEL TRAINING
@@ -391,25 +418,14 @@ class Trainer(TrainerIO):
# must copy only the meta of the exp so it survives pickle/unpickle when going to new process
self.experiment = self.experiment.get_meta_copy()
# whenever we have the correct number of tasks, we let slurm manage processes
# otherwise we launch the required number of processes
nb_requested_gpus = len(self.data_parallel_device_ids) * self.nb_gpu_nodes
nb_slurm_tasks = 0
try:
nb_slurm_tasks = int(os.environ['SLURM_NTASKS'])
is_slurm_managing_tasks = nb_slurm_tasks == nb_requested_gpus
except Exception as e:
# likely not on slurm, so set the slurm managed flag to false
is_slurm_managing_tasks = False
if is_slurm_managing_tasks:
if self.is_slurm_managing_tasks:
task = int(os.environ['SLURM_LOCALID'])
self.ddp_train(task, model)
else:
msg = f"""
You requested {nb_requested_gpus} GPUs but launched {nb_slurm_tasks} slurm tasks.
We will launch {nb_requested_gpus} processes for you.
We recommend you let slurm manage the processes by setting: --ntasks-per-node={nb_requested_gpus}
You requested {self.nb_requested_gpus} GPUs but launched {self.nb_slurm_tasks} slurm tasks.
We will launch {self.nb_requested_gpus} processes for you.
We recommend you let slurm manage the processes by setting: --ntasks-per-node={self.nb_requested_gpus}
If you're not using SLURM, ignore this message!
"""
warnings.warn(msg)
@@ -418,7 +434,7 @@ class Trainer(TrainerIO):
# 1 gpu or dp option triggers training using DP module
# easier to avoid NCCL issues
elif self.use_dp:
self.dp_train(model)
self.__dp_train(model)
# ON CPU
else:
@@ -428,15 +444,15 @@ class Trainer(TrainerIO):
# run through amp wrapper
if self.use_amp:
# An example
model, optimizers = amp.initialize(
model, self.optimizers, opt_level=self.amp_level,
)
self.optimizers = optimizers
raise MisconfigurationException('amp + cpu is not supported. Please use a GPU option')
self.__run_pretrain_routine(model)
def dp_train(self, model):
# return 1 when finished
# used for testing or when we need to know that training succeeded
return 1
def __dp_train(self, model):
# CHOOSE OPTIMIZER
# filter out the weights that were done on gpu so we can load on good old cpus
@@ -444,13 +460,13 @@ class Trainer(TrainerIO):
model.cuda(self.data_parallel_device_ids[0])
# run through amp wrapper
if self.use_amp:
# An example
model, optimizers = amp.initialize(
model, self.optimizers, opt_level=self.amp_level,
)
self.optimizers = optimizers
# check for this bug (amp + dp + !01 doesn't work)
# https://github.com/NVIDIA/apex/issues/227
if self.use_dp and self.use_amp:
m = f'amp level {self.amp_level} with DataParallel is not supported. ' \
f'See this note from NVIDIA for more info: https://github.com/NVIDIA/apex/issues/227. ' \
f'We recommend you switch to ddp if you want to use amp'
raise MisconfigurationException(m)
model = LightningDataParallel(model, device_ids=self.data_parallel_device_ids)
@@ -520,22 +536,22 @@ class Trainer(TrainerIO):
:param tries:
:return:
"""
# sets the appropriate port
try:
port = os.environ['MASTER_PORT']
except Exception as e:
port = 12910
os.environ['MASTER_PORT'] = f'{port}'
root_node = self.__resolve_root_node_address()
# figure out the root node addr
root_node = os.environ['SLURM_NODELIST'].split(' ')[0]
root_node = self.resolve_root_node_address(root_node)
os.environ['MASTER_ADDR'] = root_node
dist.init_process_group("nccl", rank=self.proc_rank, world_size=self.world_size)
def __resolve_root_node_address(self):
def resolve_root_node_address(self, root_node):
try:
root_node = os.environ['SLURM_NODELIST'].split(' ')[0]
if '[' in root_node:
name = root_node.split('[')[0]
number = root_node.split(',')[0]
@@ -566,7 +582,7 @@ class Trainer(TrainerIO):
ref_model.on_gpu = self.on_gpu
# transfer data loaders from model
self.__get_dataloaders(ref_model)
self.get_dataloaders(ref_model)
# init training constants
self.__layout_bookeeping()
@@ -593,7 +609,7 @@ class Trainer(TrainerIO):
self.experiment.save()
# enable cluster checkpointing
if self.cluster is not None:
if self.cluster is not None: # pragma: no cover
self.enable_auto_hpc_walltime_manager()
# ---------------------------
@@ -662,7 +678,7 @@ class Trainer(TrainerIO):
# nb_params, nb_tensors = count_mem_items()
model = self.__get_model()
metrics = model.update_tng_log_metrics(self.__tng_tqdm_dic)
metrics = self.__tng_tqdm_dic
# add gpu memory
if self.on_gpu:
@@ -9,7 +9,7 @@ from torch.cuda._utils import _get_device_index
import pdb
def _find_tensors(obj):
def _find_tensors(obj): # pragma: no cover
r"""
Recursively find all tensors contained in the specified object.
"""
@@ -22,8 +22,7 @@ def _find_tensors(obj):
return []
def get_a_var(obj):
def get_a_var(obj): # pragma: no cover
if isinstance(obj, torch.Tensor):
return obj
@@ -78,7 +77,7 @@ class LightningDistributedDataParallel(DistributedDataParallel):
def parallel_apply(self, replicas, inputs, kwargs):
return parallel_apply(replicas, inputs, kwargs, self.device_ids[:len(replicas)])
def forward(self, *inputs, **kwargs):
def forward(self, *inputs, **kwargs): # pragma: no cover
self._sync_params()
if self.device_ids:
inputs, kwargs = self.scatter(inputs, kwargs, self.device_ids)
@@ -113,7 +112,7 @@ class LightningDistributedDataParallel(DistributedDataParallel):
return output
def parallel_apply(modules, inputs, kwargs_tup=None, devices=None):
def parallel_apply(modules, inputs, kwargs_tup=None, devices=None): # pragma: no cover
r"""Applies each `module` in :attr:`modules` in parallel on arguments
contained in :attr:`inputs` (positional) and :attr:`kwargs_tup` (keyword)
on each of :attr:`devices`.
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@@ -27,14 +27,3 @@ class GradInformation(nn.Module):
results['grad_{}_norm_total'.format(norm_type)] = round(total_norm.data.cpu().numpy().flatten()[0], 3)
return results
def describe_grads(self):
for p in self.parameters():
g = p.grad.data.numpy().flatten()
print(np.max(g), np.min(g), np.mean(g))
def describe_params(self):
for p in self.parameters():
g = p.data.numpy().flatten()
print(np.max(g), np.min(g), np.mean(g))
+48 -27
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@@ -33,33 +33,42 @@ class ModelSummary(object):
mods = list(self.model.modules())
in_sizes = []
out_sizes = []
input_ = self.example_input_array
for i in range(1, len(mods)):
m = mods[i]
if type(input_) is list or type(input_) is tuple:
out = m(*input_)
else:
out = m(input_)
input_ = self.model.example_input_array
if type(input_) is tuple or type(input_) is list:
in_size = []
for x in input_:
if type(x) is list:
in_size.append(len(x))
else:
in_size.append(x.size())
else:
in_size = np.array(input_.size())
if self.model.on_gpu:
input_ = input_.cuda(0)
in_sizes.append(in_size)
if self.model.trainer.use_amp:
input_ = input_.half()
if type(out) is tuple or type(out) is list:
out_size = np.asarray([x.size() for x in out])
else:
out_size = np.array(out.size())
with torch.no_grad():
out_sizes.append(out_size)
input_ = out
for i in range(1, len(mods)):
m = mods[i]
if type(input_) is list or type(input_) is tuple: # pragma: no cover
out = m(*input_)
else:
out = m(input_)
if type(input_) is tuple or type(input_) is list: # pragma: no cover
in_size = []
for x in input_:
if type(x) is list:
in_size.append(len(x))
else:
in_size.append(x.size())
else:
in_size = np.array(input_.size())
in_sizes.append(in_size)
if type(out) is tuple or type(out) is list: # pragma: no cover
out_size = np.asarray([x.size() for x in out])
else:
out_size = np.array(out.size())
out_sizes.append(out_size)
input_ = out
self.in_sizes = in_sizes
self.out_sizes = out_sizes
@@ -114,13 +123,22 @@ class ModelSummary(object):
Layer Name, Layer Type, Input Size, Output Size, Number of Parameters
'''
df = pd.DataFrame( np.zeros( (len(self.layer_names), 3) ) )
df.columns = ['Name', 'Type', 'Params']
cols = ['Name', 'Type', 'Params']
if self.model.example_input_array is not None:
cols.extend(['In_sizes', 'Out_sizes'])
df = pd.DataFrame(np.zeros( (len(self.layer_names), len(cols))))
df.columns = cols
df['Name'] = self.layer_names
df['Type'] = self.layer_types
df['Params'] = self.param_nums
if self.model.example_input_array is not None:
df['In_sizes'] = self.in_sizes
df['Out_sizes'] = self.out_sizes
self.summary = df
return
@@ -128,10 +146,13 @@ class ModelSummary(object):
self.get_layer_names()
self.get_parameter_sizes()
self.get_parameter_nums()
if self.model.example_input_array is not None:
self.get_variable_sizes()
self.make_summary()
def print_mem_stack():
def print_mem_stack(): # pragma: no cover
for obj in gc.get_objects():
try:
if torch.is_tensor(obj) or (hasattr(obj, 'data') and torch.is_tensor(obj.data)):
@@ -140,7 +161,7 @@ def print_mem_stack():
pass
def count_mem_items():
def count_mem_items(): # pragma: no cover
nb_params = 0
nb_tensors = 0
for obj in gc.get_objects():
+27 -12
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@@ -41,6 +41,12 @@ class ModelIO(object):
class TrainerIO(object):
def __get_model(self):
print(type(self.model))
is_dp_module = type(self.model) is LightningDistributedDataParallel or type(self.model) is LightningDataParallel
model = self.model.module if is_dp_module else self.model
return model
# --------------------
# MODEL SAVE CHECKPOINT
# --------------------
@@ -51,14 +57,19 @@ class TrainerIO(object):
torch.save(checkpoint, filepath)
def dump_checkpoint(self):
checkpoint = {
'epoch': self.current_epoch,
'checkpoint_callback_best': self.checkpoint_callback.best,
'early_stop_callback_wait': self.early_stop_callback.wait,
'early_stop_callback_patience': self.early_stop_callback.patience,
'global_step': self.global_step
}
if self.checkpoint_callback is not None:
checkpoint['checkpoint_callback_best'] = self.checkpoint_callback.best
if self.early_stop_callback is not None:
checkpoint['early_stop_callback_wait'] = self.early_stop_callback.wait
checkpoint['early_stop_callback_patience'] = self.early_stop_callback.patience
optimizer_states = []
for i, optimizer in enumerate(self.optimizers):
optimizer_states.append(optimizer.state_dict())
@@ -66,8 +77,7 @@ class TrainerIO(object):
checkpoint['optimizer_states'] = optimizer_states
# request what to save from the model
is_dp_module = type(self.model) is LightningDistributedDataParallel or type(self.model) is LightningDataParallel
model = self.model.module if is_dp_module else self.model
model = self.__get_model()
checkpoint_dict = model.get_save_dict()
# merge trainer and model saving items
@@ -77,7 +87,7 @@ class TrainerIO(object):
# --------------------
# HPC IO
# --------------------
def enable_auto_hpc_walltime_manager(self):
def enable_auto_hpc_walltime_manager(self): # pragma: no cover
if self.cluster is None:
return
@@ -104,9 +114,13 @@ class TrainerIO(object):
:param checkpoint:
:return:
"""
self.checkpoint_callback.best = checkpoint['checkpoint_callback_best']
self.early_stop_callback.wait = checkpoint['early_stop_callback_wait']
self.early_stop_callback.patience = checkpoint['early_stop_callback_patience']
if self.checkpoint_callback is not None:
self.checkpoint_callback.best = checkpoint['checkpoint_callback_best']
if self.early_stop_callback is not None:
self.early_stop_callback.wait = checkpoint['early_stop_callback_wait']
self.early_stop_callback.patience = checkpoint['early_stop_callback_patience']
self.global_step = checkpoint['global_step']
self.current_epoch = checkpoint['epoch']
@@ -135,7 +149,8 @@ class TrainerIO(object):
filepath = '{}/hpc_ckpt_{}.ckpt'.format(folderpath, ckpt_number)
# give model a chance to do something on hpc_save
self.on_hpc_save()
model = self.__get_model()
model.on_hpc_save()
# request what to save from the model
checkpoint_dict = self.dump_checkpoint()
@@ -155,11 +170,11 @@ class TrainerIO(object):
self.restore_training_state(checkpoint)
# load model state
model = self.model.module if type(self.model) is LightningDataParallel else self.model
model = self.__get_model()
model.load_model_specific(checkpoint)
# call model hook
self.on_hpc_load()
model.on_hpc_load()
def max_ckpt_in_folder(self, path):
files = os.listdir(path)
@@ -1,22 +0,0 @@
from torch import nn
from torch import optim
class OptimizerConfig(nn.Module):
def choose_optimizer(self, optimizer, params, optimizer_params, opt_name_key):
if optimizer == 'adam':
optimizer = optim.Adam(params, **optimizer_params)
if optimizer == 'sparse_adam':
optimizer = optim.SparseAdam(params, **optimizer_params)
if optimizer == 'sgd':
optimizer = optim.SGD(params, **optimizer_params)
if optimizer == 'adadelta':
optimizer = optim.Adadelta(params, **optimizer_params)
# transfer opt state if loaded
if opt_name_key in self.loaded_optimizer_states_dict:
state = self.loaded_optimizer_states_dict[opt_name_key]
optimizer.load_state_dict(state)
return optimizer
+2 -22
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@@ -5,11 +5,10 @@ import math
from pytorch_lightning.root_module.memory import ModelSummary
from pytorch_lightning.root_module.grads import GradInformation
from pytorch_lightning.root_module.model_saving import ModelIO, load_hparams_from_tags_csv
from pytorch_lightning.root_module.optimization import OptimizerConfig
from pytorch_lightning.root_module.hooks import ModelHooks
class LightningModule(GradInformation, ModelIO, OptimizerConfig, ModelHooks):
class LightningModule(GradInformation, ModelIO, ModelHooks):
def __init__(self, hparams):
super(LightningModule, self).__init__()
@@ -22,6 +21,7 @@ class LightningModule(GradInformation, ModelIO, OptimizerConfig, ModelHooks):
self.loaded_optimizer_states_dict = {}
self.trainer = None
self.experiment = None
self.example_input_array = None
# track if gpu was requested for checkpointing
self.on_gpu = False
@@ -71,15 +71,6 @@ class LightningModule(GradInformation, ModelIO, OptimizerConfig, ModelHooks):
"""
raise NotImplementedError
def update_tng_log_metrics(self, logs):
"""
Chance to update metrics to be logged for training step.
For example, add music, images, etc... to log
:param logs:
:return:
"""
return logs
def loss(self, *args, **kwargs):
"""
Expand model_out into your components
@@ -92,7 +83,6 @@ class LightningModule(GradInformation, ModelIO, OptimizerConfig, ModelHooks):
model_summary = ModelSummary(self)
print(model_summary)
def freeze(self):
for param in self.parameters():
param.requires_grad = False
@@ -125,16 +115,6 @@ class LightningModule(GradInformation, ModelIO, OptimizerConfig, ModelHooks):
"""
raise NotImplementedError
@staticmethod
def get_process_position(gpus):
try:
current_gpu = os.environ["CUDA_VISIBLE_DEVICES"]
gpu_ids = gpus.split(',')
process_position = gpu_ids.index(current_gpu)
return process_position, current_gpu
except Exception as e:
return 0, 0
@classmethod
def load_from_metrics(cls, weights_path, tags_csv, on_gpu, map_location=None):
"""
@@ -0,0 +1,280 @@
import os
from collections import OrderedDict
import torch.nn as nn
from torchvision.datasets import MNIST
import torchvision.transforms as transforms
import torch
import torch.nn.functional as F
from test_tube import HyperOptArgumentParser
from torch import optim
from torch.utils.data import DataLoader
from torch.utils.data.distributed import DistributedSampler
from pytorch_lightning.root_module.root_module import LightningModule
class LightningTestModel(LightningModule):
"""
Sample model to show how to define a template
"""
def __init__(self, hparams, force_remove_distributed_sampler=False):
"""
Pass in parsed HyperOptArgumentParser to the model
:param hparams:
"""
# init superclass
super(LightningTestModel, self).__init__(hparams)
self.batch_size = hparams.batch_size
# if you specify an example input, the summary will show input/output for each layer
self.example_input_array = torch.rand(5, 28 * 28)
# remove to test warning for dist sampler
self.force_remove_distributed_sampler = force_remove_distributed_sampler
# build model
self.__build_model()
# ---------------------
# MODEL SETUP
# ---------------------
def __build_model(self):
"""
Layout model
:return:
"""
self.c_d1 = nn.Linear(in_features=self.hparams.in_features, out_features=self.hparams.hidden_dim)
self.c_d1_bn = nn.BatchNorm1d(self.hparams.hidden_dim)
self.c_d1_drop = nn.Dropout(self.hparams.drop_prob)
self.c_d2 = nn.Linear(in_features=self.hparams.hidden_dim, out_features=self.hparams.out_features)
# ---------------------
# TRAINING
# ---------------------
def forward(self, x):
"""
No special modification required for lightning, define as you normally would
:param x:
:return:
"""
x = self.c_d1(x)
x = torch.tanh(x)
x = self.c_d1_bn(x)
x = self.c_d1_drop(x)
x = self.c_d2(x)
logits = F.log_softmax(x, dim=1)
return logits
def loss(self, labels, logits):
nll = F.nll_loss(logits, labels)
return nll
def training_step(self, data_batch, batch_i):
"""
Lightning calls this inside the training loop
:param data_batch:
:return:
"""
# forward pass
x, y = data_batch
x = x.view(x.size(0), -1)
y_hat = self.forward(x)
# calculate loss
loss_val = self.loss(y, y_hat)
# in DP mode (default) make sure if result is scalar, there's another dim in the beginning
if self.trainer.use_dp:
loss_val = loss_val.unsqueeze(0)
output = OrderedDict({
'loss': loss_val
})
# can also return just a scalar instead of a dict (return loss_val)
return output
def validation_step(self, data_batch, batch_i):
"""
Lightning calls this inside the validation loop
:param data_batch:
:return:
"""
x, y = data_batch
x = x.view(x.size(0), -1)
y_hat = self.forward(x)
loss_val = self.loss(y, y_hat)
# acc
labels_hat = torch.argmax(y_hat, dim=1)
val_acc = torch.sum(y == labels_hat).item() / (len(y) * 1.0)
val_acc = torch.tensor(val_acc)
if self.on_gpu:
val_acc = val_acc.cuda(loss_val.device.index)
# in DP mode (default) make sure if result is scalar, there's another dim in the beginning
if self.trainer.use_dp:
loss_val = loss_val.unsqueeze(0)
val_acc = val_acc.unsqueeze(0)
# alternate possible outputs to test
if self.trainer.batch_nb % 1 == 0:
output = OrderedDict({
'val_loss': loss_val,
'val_acc': val_acc,
})
return output
if self.trainer.batch_nb % 2 == 0:
return val_acc
if self.trainer.batch_nb % 3 == 0:
output = OrderedDict({
'val_loss': loss_val,
'val_acc': val_acc,
'test_dic': {'val_loss_a': loss_val}
})
return output
def validation_end(self, outputs):
"""
Called at the end of validation to aggregate outputs
:param outputs: list of individual outputs of each validation step
:return:
"""
# if returned a scalar from validation_step, outputs is a list of tensor scalars
# we return just the average in this case (if we want)
# return torch.stack(outputs).mean()
val_loss_mean = 0
val_acc_mean = 0
for output in outputs:
val_loss_mean += output['val_loss']
val_acc_mean += output['val_acc']
val_loss_mean /= len(outputs)
val_acc_mean /= len(outputs)
tqdm_dic = {'val_loss': val_loss_mean.item(), 'val_acc': val_acc_mean.item()}
return tqdm_dic
def on_tng_metrics(self, logs):
logs['some_tensor_to_test'] = torch.rand(1)
# ---------------------
# MODEL SAVING
# ---------------------
def get_save_dict(self):
checkpoint = {'state_dict': self.state_dict()}
return checkpoint
def load_model_specific(self, checkpoint):
self.load_state_dict(checkpoint['state_dict'])
pass
# ---------------------
# TRAINING SETUP
# ---------------------
def configure_optimizers(self):
"""
return whatever optimizers we want here
:return: list of optimizers
"""
optimizer = optim.Adam(self.parameters(), lr=self.hparams.learning_rate)
return [optimizer]
def __dataloader(self, train):
# init data generators
transform = transforms.Compose([transforms.ToTensor(), transforms.Normalize((0.5,), (1.0,))])
dataset = MNIST(root=self.hparams.data_root, train=train, transform=transform, download=True)
# when using multi-node we need to add the datasampler
train_sampler = None
batch_size = self.hparams.batch_size
try:
if self.on_gpu and not self.force_remove_distributed_sampler:
train_sampler = DistributedSampler(dataset, rank=self.trainer.proc_rank)
batch_size = batch_size // self.trainer.world_size # scale batch size
except Exception as e:
pass
should_shuffle = train_sampler is None
loader = DataLoader(
dataset=dataset,
batch_size=batch_size,
shuffle=should_shuffle,
sampler=train_sampler
)
return loader
@property
def tng_dataloader(self):
if self._tng_dataloader is None:
try:
self._tng_dataloader = self.__dataloader(train=True)
except Exception as e:
print(e)
raise e
return self._tng_dataloader
@property
def val_dataloader(self):
if self._val_dataloader is None:
try:
self._val_dataloader = self.__dataloader(train=False)
except Exception as e:
print(e)
raise e
return self._val_dataloader
@property
def test_dataloader(self):
if self._test_dataloader is None:
try:
self._test_dataloader = self.__dataloader(train=False)
except Exception as e:
print(e)
raise e
return self._test_dataloader
@staticmethod
def add_model_specific_args(parent_parser, root_dir):
"""
Parameters you define here will be available to your model through self.hparams
:param parent_parser:
:param root_dir:
:return:
"""
parser = HyperOptArgumentParser(strategy=parent_parser.strategy, parents=[parent_parser])
# param overwrites
# parser.set_defaults(gradient_clip=5.0)
# network params
parser.opt_list('--drop_prob', default=0.2, options=[0.2, 0.5], type=float, tunable=False)
parser.add_argument('--in_features', default=28*28, type=int)
parser.add_argument('--out_features', default=10, type=int)
parser.add_argument('--hidden_dim', default=50000, type=int) # use 500 for CPU, 50000 for GPU to see speed difference
# data
parser.add_argument('--data_root', default=os.path.join(root_dir, 'mnist'), type=str)
# training params (opt)
parser.opt_list('--learning_rate', default=0.001*8, type=float, options=[0.0001, 0.0005, 0.001, 0.005],
tunable=False)
parser.opt_list('--optimizer_name', default='adam', type=str, options=['adam'], tunable=False)
# if using 2 nodes with 4 gpus each the batch size here (256) will be 256 / (2*8) = 16 per gpu
parser.opt_list('--batch_size', default=256*8, type=int, options=[32, 64, 128, 256], tunable=False,
help='batch size will be divided over all the gpus being used across all nodes')
return parser
-4
View File
@@ -52,10 +52,6 @@ def main(hparams, cluster, results_dict):
hparams.__setattr__('nb_gpus', torch.cuda.device_count())
hparams.__setattr__('inference_mode', hparams.model_load_weights_path is not None)
# delay each training start to not overwrite logs
process_position, current_gpu = TRAINING_MODEL.get_process_position(hparams.gpus)
sleep(process_position + 1)
# init experiment
exp = Experiment(
name=hparams.tt_name,
+5
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@@ -0,0 +1,5 @@
import pdb
import sys
class MisconfigurationException(Exception):
pass
-104
View File
@@ -1,104 +0,0 @@
import torch
import numpy as np
from copy import deepcopy
class PretrainedEmbedding(torch.nn.Embedding):
def __init__(self, embedding_path, embedding_dim, task_vocab, freeze=True, *args, **kwargs):
"""
Loads a prebuilt pytorch embedding from any embedding formated file.
Padding=0 by default.
>>> emb = PretrainedEmbedding(embedding_path='glove.840B.300d.txt',embedding_dim=300, task_vocab={'hello': 1, 'world': 2})
>>> data = torch.Tensor([[0, 1], [0, 2]]).long()
>>> embedded = emb(data)
:param embedding_path:
:param emb_dim:
:param task_vocab:
:param freeze:
:return:
"""
# count the vocab
self.vocab_size = max(task_vocab.values()) + 1
super(PretrainedEmbedding, self).__init__(self.vocab_size, embedding_dim, padding_idx=0, *args, **kwargs)
# load pretrained embeddings
new_emb = self.__load_task_specific_embeddings(deepcopy(task_vocab), embedding_path, embedding_dim, freeze)
# transfer weights
self.weight = new_emb.weight
# apply freeze
should_freeze = not freeze
self.weight.requires_grad = should_freeze
def __load_task_specific_embeddings(self, vocab_words, embedding_path, emb_dim, freeze):
"""
Iterates embedding file to only pull out task specific embeddings
:param vocab_words:
:param embedding_path:
:param emb_dim:
:param freeze:
:return:
"""
# holds final embeddings for relevant words
embeddings = np.zeros(shape=(self.vocab_size, emb_dim))
# load embedding line by line and extract relevant embeddings
with open(embedding_path, encoding='utf-8') as f:
for line in f:
tokens = line.split(' ')
word = tokens[0]
embedding = tokens[1:]
embedding[-1] = embedding[-1][:-1] # remove last new line
if word in vocab_words:
vocab_word_i = vocab_words[word]
# skip words that try to overwrite pad idx
if vocab_word_i == 0:
del vocab_words[word]
continue
emb_vals = np.asarray([float(x) for x in embedding])
embeddings[vocab_word_i] = emb_vals
# remove vocab word to early terminate
del vocab_words[word]
# early break
if len(vocab_words) == 0:
break
# add random vectors for the non-pretrained words
# these are vocab words NOT found in the pretrained embeddings
for w, i in vocab_words.items():
# skip words that try to overwrite pad idx
if i == 0:
continue
embedding = np.random.normal(size=emb_dim)
embeddings[i] = embedding
# turn into pt embedding
embeddings = torch.FloatTensor(embeddings)
embeddings = torch.nn.Embedding.from_pretrained(embeddings, freeze=freeze)
return embeddings
if __name__ == '__main__':
emb = PretrainedEmbedding(
embedding_path='/Users/waf/Developer',
embedding_dim=300,
task_vocab={'hello': 1, 'world': 2}
)
data = torch.Tensor([[0, 1], [0, 2]]).long()
embedded = emb(data)
print(embedded)
-28
View File
@@ -1,28 +0,0 @@
import numpy as np
np.seterr(divide='ignore', invalid='ignore')
def plot_confusion_matrix(cm,
save_path,
normalize=False,
title='Confusion matrix',
ylabel='y',
xlabel='x'):
"""
This function prints and plots the confusion matrix.
Normalization can be applied by setting `normalize=True`.
"""
from matplotlib import pyplot as plt
if normalize:
cm = cm.astype('float') / cm.sum(axis=1)[:, np.newaxis]
print("Normalized confusion matrix")
else:
print('Confusion matrix, without normalization')
fig = plt.figure()
plt.matshow(cm)
plt.title(title)
plt.colorbar()
plt.ylabel(ylabel)
plt.xlabel(xlabel)
plt.savefig(save_path)
+4 -3
View File
@@ -1,10 +1,11 @@
atomicwrites==1.2.1
attrs==18.2.0
certifi==2018.11.29
cffi==1.11.5
coverage==4.5.3
imageio==2.4.1
mkl-fft==1.0.6
mkdocs==1.0.4
mkl-random==1.0.2
more-itertools==5.0.0
numpy==1.15.4
@@ -14,7 +15,7 @@ Pillow==5.3.0
pluggy==0.8.0
py==1.7.0
pycparser==2.19
pytest==4.0.2
pytest==5.0.1
python-dateutil==2.7.5
pytz==2018.7
scikit-learn==0.20.2
@@ -25,7 +26,7 @@ tensorboard==1.14.0
tensorboardX==1.7
tensorflow==1.14.0
test-tube==0.643
torch==1.0.0
torch==1.1.0
torchvision==0.2.1
tqdm==4.32.1
twine==1.13.0
+27
View File
@@ -16,6 +16,33 @@ markers =
ignore = E731,W504
max-line-length = 120
[coverage:report]
exclude_lines =
pragma: no cover
def __repr__
if self.debug:
if settings.DEBUG
raise AssertionError
raise NotImplementedError
if 0:
if __name__ == .__main__.:
except Exception as e
print(e)
print(traceback.print_exc())
return *
raise Exception
warnings
print
raise RuntimeError
break
pass
os.makedirs
omit =
pytorch_lightning/callbacks/pt_callbacks.py
tests/test_models.py
pytorch_lightning/testing_models/lm_test_module.py
[flake8]
ignore = E731,W504,F401,F841
max-line-length = 120
+46
View File
@@ -0,0 +1,46 @@
# Pytorch-Lightning Tests
## Running tests
To run all tests do the following:
```bash
git clone https://github.com/williamFalcon/pytorch-lightning
cd pytorch-lightning
# install module locally
pip install -e .
# install dev deps
pip install -r requirements.txt
# run tests
py.test
# or to generate coverage
pip install coverage
coverage run tests/test_models.py
```
To test models that require GPU make sure to run the above command on a GPU machine.
The GPU machine must have:
1. At least 2 GPUs.
2. [NVIDIA-apex](https://github.com/NVIDIA/apex#linux) installed.
### test_models.py
This file fits a tiny model on MNIST using these different set-ups.
1. CPU only.
2. Single GPU with DP.
3. Multiple (2) GPUs using DP.
3. Multiple (2) GPUs using DDP.
3. Multiple (2) GPUs using DP + apex (for 16-bit precision).
3. Multiple (2) GPUs using DDP + apex (for 16-bit precision).
For each set up it also tests:
1. model saving.
2. model loading.
3. predicting with a loaded model.
4. simulated save from HPC signal.
5. simulated load from HPC signal.
+142
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@@ -0,0 +1,142 @@
import pytest
from pytorch_lightning import Trainer
from pytorch_lightning.examples.new_project_templates.lightning_module_template import LightningTemplateModel
from argparse import Namespace
from test_tube import Experiment
from pytorch_lightning.callbacks import ModelCheckpoint
import numpy as np
import warnings
import torch
import os
import shutil
import pdb
def get_model():
# set up model with these hyperparams
root_dir = os.path.dirname(os.path.realpath(__file__))
hparams = Namespace(**{'drop_prob': 0.2,
'batch_size': 32,
'in_features': 28*28,
'learning_rate': 0.001*8,
'optimizer_name': 'adam',
'data_root': os.path.join(root_dir, 'mnist'),
'out_features': 10,
'hidden_dim': 1000})
model = LightningTemplateModel(hparams)
return model, hparams
def get_exp(debug=True):
# set up exp object without actually saving logs
root_dir = os.path.dirname(os.path.realpath(__file__))
exp = Experiment(debug=debug, save_dir=root_dir, name='tests_tt_dir')
return exp
def init_save_dir():
root_dir = os.path.dirname(os.path.realpath(__file__))
save_dir = os.path.join(root_dir, 'save_dir')
if os.path.exists(save_dir):
shutil.rmtree(save_dir)
os.makedirs(save_dir, exist_ok=True)
return save_dir
def clear_save_dir():
root_dir = os.path.dirname(os.path.realpath(__file__))
save_dir = os.path.join(root_dir, 'save_dir')
if os.path.exists(save_dir):
shutil.rmtree(save_dir)
def load_model(exp, save_dir):
# load trained model
tags_path = exp.get_data_path(exp.name, exp.version)
tags_path = os.path.join(tags_path, 'meta_tags.csv')
checkpoints = [x for x in os.listdir(save_dir) if '.ckpt' in x]
weights_dir = os.path.join(save_dir, checkpoints[0])
trained_model = LightningTemplateModel.load_from_metrics(weights_path=weights_dir, tags_csv=tags_path, on_gpu=True)
assert trained_model is not None, 'loading model failed'
return trained_model
def run_prediction(dataloader, trained_model):
# run prediction on 1 batch
for batch in dataloader:
break
x, y = batch
x = x.view(x.size(0), -1)
y_hat = trained_model(x)
# acc
labels_hat = torch.argmax(y_hat, dim=1)
val_acc = torch.sum(y == labels_hat).item() / (len(y) * 1.0)
val_acc = torch.tensor(val_acc)
val_acc = val_acc.item()
print(val_acc)
assert val_acc > 0.70, f'this model is expected to get > 0.7 in test set (it got {val_acc})'
def mainasdf():
save_dir = init_save_dir()
model, hparams = get_model()
# exp file to get meta
exp = get_exp(False)
exp.argparse(hparams)
exp.save()
# exp file to get weights
checkpoint = ModelCheckpoint(save_dir)
trainer = Trainer(
experiment=exp,
checkpoint_callback=checkpoint,
progress_bar=True,
max_nb_epochs=1,
gpus=[0, 1],
distributed_backend='dp',
use_amp=True
)
result = trainer.fit(model)
# correct result and ok accuracy
assert result == 1, 'amp + ddp model failed to complete'
# test model loading
pretrained_model = load_model(exp, save_dir)
# test model preds
run_prediction(model.test_dataloader, pretrained_model)
clear_save_dir()
if __name__ == '__main__':
import subprocess
import re
print('getting pid')
command = "lsof -i :%s | awk '{print $2}'" % 12910
pids = subprocess.check_output(command, shell=True)
pids = pids.strip()
print(len(pids))
+506
View File
@@ -0,0 +1,506 @@
import pytest
from pytorch_lightning import Trainer
from pytorch_lightning.examples.new_project_templates.lightning_module_template import LightningTemplateModel
from pytorch_lightning.testing_models.lm_test_module import LightningTestModel
from argparse import Namespace
from test_tube import Experiment
from pytorch_lightning.callbacks import ModelCheckpoint, EarlyStopping
from pytorch_lightning.utils.debugging import MisconfigurationException
from pytorch_lightning.root_module import memory
from pytorch_lightning.models.trainer import reduce_distributed_output
import numpy as np
import warnings
import torch
import os
import shutil
SEED = 2334
torch.manual_seed(SEED)
np.random.seed(SEED)
# ------------------------------------------------------------------------
# TESTS
# ------------------------------------------------------------------------
def test_dp_output_reduce():
# test identity when we have a single gpu
out = torch.rand(3, 1)
assert reduce_distributed_output(out, nb_gpus=1) is out
# average when we have multiples
assert reduce_distributed_output(out, nb_gpus=2) == out.mean()
# when we have a dict of vals
out = {
'a': out,
'b': {
'c': out
}
}
reduced = reduce_distributed_output(out, nb_gpus=3)
assert reduced['a'] == out['a']
assert reduced['b']['c'] == out['b']['c']
def test_amp_gpu_ddp_slurm_managed():
"""
Make sure DDP + AMP work
:return:
"""
if not torch.cuda.is_available():
warnings.warn('test_amp_gpu_ddp cannot run. Rerun on a GPU node to run this test')
return
if not torch.cuda.device_count() > 1:
warnings.warn('test_amp_gpu_ddp cannot run. Rerun on a node with 2+ GPUs to run this test')
return
os.environ['MASTER_PORT'] = str(np.random.randint(12000, 19000, 1)[0])
hparams = get_hparams()
model = LightningTestModel(hparams)
trainer_options = dict(
progress_bar=True,
max_nb_epochs=1,
gpus=[0],
distributed_backend='ddp',
use_amp=True
)
save_dir = init_save_dir()
# exp file to get meta
exp = get_exp(False)
exp.argparse(hparams)
exp.save()
# exp file to get weights
checkpoint = ModelCheckpoint(save_dir)
# add these to the trainer options
trainer_options['checkpoint_callback'] = checkpoint
trainer_options['experiment'] = exp
# fit model
trainer = Trainer(**trainer_options)
trainer.is_slurm_managing_tasks = True
result = trainer.fit(model)
# correct result and ok accuracy
assert result == 1, 'amp + ddp model failed to complete'
# test root model address
assert trainer.resolve_root_node_address('abc') == 'abc'
assert trainer.resolve_root_node_address('abc[23]') == 'abc23'
assert trainer.resolve_root_node_address('abc[23-24]') == 'abc23'
assert trainer.resolve_root_node_address('abc[23-24, 45-40, 40]') == 'abc23'
# test model loading with a map_location
map_location = 'cuda:1'
pretrained_model = load_model(exp, save_dir, True, map_location)
# test model preds
run_prediction(model.test_dataloader, pretrained_model)
if trainer.use_ddp:
# on hpc this would work fine... but need to hack it for the purpose of the test
trainer.model = pretrained_model
trainer.optimizers = pretrained_model.configure_optimizers()
# test HPC loading / saving
trainer.hpc_save(save_dir, exp)
trainer.hpc_load(save_dir, on_gpu=True)
# test freeze on gpu
model.freeze()
model.unfreeze()
clear_save_dir()
def test_early_stopping_cpu_model():
"""
Test each of the trainer options
:return:
"""
stopping = EarlyStopping()
trainer_options = dict(
early_stop_callback=stopping,
gradient_clip=1.0,
overfit_pct=0.20,
track_grad_norm=2,
print_nan_grads=True,
progress_bar=False,
experiment=get_exp(),
train_percent_check=0.1,
val_percent_check=0.1
)
model, hparams = get_model()
run_gpu_model_test(trainer_options, model, hparams, on_gpu=False)
# test freeze on cpu
model.freeze()
model.unfreeze()
def test_cpu_model_with_amp():
"""
Make sure model trains on CPU
:return:
"""
trainer_options = dict(
progress_bar=False,
experiment=get_exp(),
max_nb_epochs=1,
train_percent_check=0.4,
val_percent_check=0.4,
use_amp=True
)
model, hparams = get_model()
with pytest.raises(MisconfigurationException):
run_gpu_model_test(trainer_options, model, hparams, on_gpu=False)
def test_cpu_model():
"""
Make sure model trains on CPU
:return:
"""
trainer_options = dict(
progress_bar=False,
experiment=get_exp(),
max_nb_epochs=1,
train_percent_check=0.4,
val_percent_check=0.4
)
model, hparams = get_model()
run_gpu_model_test(trainer_options, model, hparams, on_gpu=False)
def test_all_features_cpu_model():
"""
Test each of the trainer options
:return:
"""
trainer_options = dict(
gradient_clip=1.0,
overfit_pct=0.20,
track_grad_norm=2,
print_nan_grads=True,
progress_bar=False,
experiment=get_exp(),
max_nb_epochs=1,
train_percent_check=0.4,
val_percent_check=0.4
)
model, hparams = get_model()
run_gpu_model_test(trainer_options, model, hparams, on_gpu=False)
def test_single_gpu_model():
"""
Make sure single GPU works (DP mode)
:return:
"""
if not torch.cuda.is_available():
warnings.warn('test_single_gpu_model cannot run. Rerun on a GPU node to run this test')
return
model, hparams = get_model()
trainer_options = dict(
progress_bar=False,
max_nb_epochs=1,
train_percent_check=0.1,
val_percent_check=0.1,
gpus=[0]
)
run_gpu_model_test(trainer_options, model, hparams)
def test_multi_gpu_model_dp():
"""
Make sure DP works
:return:
"""
if not torch.cuda.is_available():
warnings.warn('test_multi_gpu_model_dp cannot run. Rerun on a GPU node to run this test')
return
if not torch.cuda.device_count() > 1:
warnings.warn('test_multi_gpu_model_dp cannot run. Rerun on a node with 2+ GPUs to run this test')
return
model, hparams = get_model()
trainer_options = dict(
progress_bar=False,
max_nb_epochs=1,
train_percent_check=0.1,
val_percent_check=0.1,
gpus='-1'
)
run_gpu_model_test(trainer_options, model, hparams)
# test memory helper functions
memory.get_gpu_memory_map()
def test_amp_gpu_dp():
"""
Make sure DP + AMP work
:return:
"""
if not torch.cuda.is_available():
warnings.warn('test_amp_gpu_dp cannot run. Rerun on a GPU node to run this test')
return
if not torch.cuda.device_count() > 1:
warnings.warn('test_amp_gpu_dp cannot run. Rerun on a node with 2+ GPUs to run this test')
return
model, hparams = get_model()
trainer_options = dict(
max_nb_epochs=1,
gpus='0, 1', # test init with gpu string
distributed_backend='dp',
use_amp=True
)
with pytest.raises(MisconfigurationException):
run_gpu_model_test(trainer_options, model, hparams)
def test_multi_gpu_model_ddp():
"""
Make sure DDP works
:return:
"""
if not torch.cuda.is_available():
warnings.warn('test_multi_gpu_model_ddp cannot run. Rerun on a GPU node to run this test')
return
if not torch.cuda.device_count() > 1:
warnings.warn('test_multi_gpu_model_ddp cannot run. Rerun on a node with 2+ GPUs to run this test')
return
os.environ['MASTER_PORT'] = str(np.random.randint(12000, 19000, 1)[0])
model, hparams = get_model()
trainer_options = dict(
progress_bar=False,
max_nb_epochs=1,
train_percent_check=0.4,
val_percent_check=0.2,
gpus=[0, 1],
distributed_backend='ddp'
)
run_gpu_model_test(trainer_options, model, hparams)
def test_amp_gpu_ddp():
"""
Make sure DDP + AMP work
:return:
"""
if not torch.cuda.is_available():
warnings.warn('test_amp_gpu_ddp cannot run. Rerun on a GPU node to run this test')
return
if not torch.cuda.device_count() > 1:
warnings.warn('test_amp_gpu_ddp cannot run. Rerun on a node with 2+ GPUs to run this test')
return
os.environ['MASTER_PORT'] = str(np.random.randint(12000, 19000, 1)[0])
hparams = get_hparams()
model = LightningTestModel(hparams)
trainer_options = dict(
progress_bar=True,
max_nb_epochs=1,
gpus=[0, 1],
distributed_backend='ddp',
use_amp=True
)
run_gpu_model_test(trainer_options, model, hparams)
def test_ddp_sampler_error():
"""
Make sure DDP + AMP work
:return:
"""
if not torch.cuda.is_available():
warnings.warn('test_amp_gpu_ddp cannot run. Rerun on a GPU node to run this test')
return
if not torch.cuda.device_count() > 1:
warnings.warn('test_amp_gpu_ddp cannot run. Rerun on a node with 2+ GPUs to run this test')
return
os.environ['MASTER_PORT'] = str(np.random.randint(12000, 19000, 1)[0])
hparams = get_hparams()
model = LightningTestModel(hparams, force_remove_distributed_sampler=True)
exp = get_exp(True)
exp.save()
trainer = Trainer(
experiment=exp,
progress_bar=False,
max_nb_epochs=1,
gpus=[0, 1],
distributed_backend='ddp',
use_amp=True
)
with pytest.raises(MisconfigurationException):
trainer.get_dataloaders(model)
clear_save_dir()
# ------------------------------------------------------------------------
# UTILS
# ------------------------------------------------------------------------
def run_gpu_model_test(trainer_options, model, hparams, on_gpu=True):
save_dir = init_save_dir()
# exp file to get meta
exp = get_exp(False)
exp.argparse(hparams)
exp.save()
# exp file to get weights
checkpoint = ModelCheckpoint(save_dir)
# add these to the trainer options
trainer_options['checkpoint_callback'] = checkpoint
trainer_options['experiment'] = exp
# fit model
trainer = Trainer(**trainer_options)
result = trainer.fit(model)
# correct result and ok accuracy
assert result == 1, 'amp + ddp model failed to complete'
# test model loading
pretrained_model = load_model(exp, save_dir, on_gpu)
# test model preds
run_prediction(model.test_dataloader, pretrained_model)
if trainer.use_ddp:
# on hpc this would work fine... but need to hack it for the purpose of the test
trainer.model = pretrained_model
trainer.optimizers = pretrained_model.configure_optimizers()
# test HPC loading / saving
trainer.hpc_save(save_dir, exp)
trainer.hpc_load(save_dir, on_gpu=on_gpu)
clear_save_dir()
def get_hparams():
root_dir = os.path.dirname(os.path.realpath(__file__))
hparams = Namespace(**{'drop_prob': 0.2,
'batch_size': 32,
'in_features': 28*28,
'learning_rate': 0.001*8,
'optimizer_name': 'adam',
'data_root': os.path.join(root_dir, 'mnist'),
'out_features': 10,
'hidden_dim': 1000})
return hparams
def get_model():
# set up model with these hyperparams
hparams = get_hparams()
model = LightningTemplateModel(hparams)
return model, hparams
def get_exp(debug=True):
# set up exp object without actually saving logs
root_dir = os.path.dirname(os.path.realpath(__file__))
exp = Experiment(debug=debug, save_dir=root_dir, name='tests_tt_dir')
return exp
def init_save_dir():
root_dir = os.path.dirname(os.path.realpath(__file__))
save_dir = os.path.join(root_dir, 'save_dir')
if os.path.exists(save_dir):
shutil.rmtree(save_dir)
os.makedirs(save_dir, exist_ok=True)
return save_dir
def clear_save_dir():
root_dir = os.path.dirname(os.path.realpath(__file__))
save_dir = os.path.join(root_dir, 'save_dir')
if os.path.exists(save_dir):
shutil.rmtree(save_dir)
def load_model(exp, save_dir, on_gpu, map_location=None):
# load trained model
tags_path = exp.get_data_path(exp.name, exp.version)
tags_path = os.path.join(tags_path, 'meta_tags.csv')
checkpoints = [x for x in os.listdir(save_dir) if '.ckpt' in x]
weights_dir = os.path.join(save_dir, checkpoints[0])
trained_model = LightningTemplateModel.load_from_metrics(weights_path=weights_dir,
tags_csv=tags_path,
on_gpu=on_gpu,
map_location=map_location)
assert trained_model is not None, 'loading model failed'
return trained_model
def run_prediction(dataloader, trained_model):
# run prediction on 1 batch
for batch in dataloader:
break
x, y = batch
x = x.view(x.size(0), -1)
y_hat = trained_model(x)
# acc
labels_hat = torch.argmax(y_hat, dim=1)
val_acc = torch.sum(y == labels_hat).item() / (len(y) * 1.0)
val_acc = torch.tensor(val_acc)
val_acc = val_acc.item()
print(val_acc)
assert val_acc > 0.50, f'this model is expected to get > 0.50 in test set (it got {val_acc})'
def assert_ok_acc(trainer):
# this model should get 0.80+ acc
acc = trainer.tng_tqdm_dic['val_acc']
assert acc > 0.50, f'model failed to get expected 0.50 validation accuracy. Got: {acc}'
if __name__ == '__main__':
pytest.main([__file__])