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@@ -8,6 +8,7 @@ datasets/
|
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model_weights/
|
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app/models/
|
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pip-wheel-metadata/
|
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test_tube_exp/
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# Byte-compiled / optimized / DLL files
|
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__pycache__/
|
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|
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@@ -36,9 +36,26 @@ To use lightning do 2 things:
|
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2. [Define a LightningModel](https://github.com/williamFalcon/pytorch-lightning/blob/master/examples/new_project_templates/lightning_module_template.py).
|
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|
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## What does lightning control for me?
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Everything! Except the following three things:
|
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Everything!
|
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Except for these 6 core functions which you define:
|
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|
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**What happens in the training loop**
|
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```{.python}
|
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# what to do in the training loop
|
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def training_step(self, data_batch, batch_nb):
|
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|
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# what to do in the validation loop
|
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def validation_step(self, data_batch, batch_nb):
|
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|
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# how to aggregate validation_step outputs
|
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def validation_end(self, outputs):
|
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|
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# and your dataloaders
|
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def tng_dataloader():
|
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def val_dataloader():
|
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def test_dataloader():
|
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```
|
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|
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**Could be as complex as seq-2-seq + attention**
|
||||
|
||||
```python
|
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# define what happens for training here
|
||||
@@ -46,25 +63,39 @@ def training_step(self, data_batch, batch_nb):
|
||||
x, y = data_batch
|
||||
|
||||
# define your own forward and loss calculation
|
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out = self.forward(x)
|
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loss = my_loss(out, y)
|
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hidden_states = self.encoder(x)
|
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|
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# even as complex as a seq-2seq + attn model
|
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# (this is just a toy, non-working example to illustrate)
|
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start_token = '<SOS>'
|
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last_hidden = torch.zeros(...)
|
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loss = 0
|
||||
for step in range(max_seq_len):
|
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attn_context = self.attention_nn(hidden_states, start_token)
|
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pred = self.decoder(start_token, attn_context, last_hidden)
|
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last_hidden = pred
|
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pred = self.predict_nn(pred)
|
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loss += self.loss(last_hidden, y[step])
|
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|
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#toy example as well
|
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loss = loss / max_seq_len
|
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return {'loss': loss}
|
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```
|
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|
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**What happens in the validation loop**
|
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**Or as basic as CNN image classification**
|
||||
|
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```python
|
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# define what happens for validation here
|
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def validation_step(self, data_batch, batch_nb):
|
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x, y = data_batch
|
||||
|
||||
# define your own forward and loss calculation
|
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# or as basic as a CNN classification
|
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out = self.forward(x)
|
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loss = my_loss(out, y)
|
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return {'loss': loss}
|
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```
|
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|
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**And what to do with the output of all validation batches**
|
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**And you also decide how to collate the output of all validation steps**
|
||||
|
||||
```python
|
||||
def validation_end(self, outputs):
|
||||
@@ -84,22 +115,52 @@ def validation_end(self, outputs):
|
||||
tqdm_dic = {'val_loss': val_loss_mean.item(), 'val_acc': val_acc_mean.item()}
|
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return tqdm_dic
|
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```
|
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|
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## Tensorboard
|
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Lightning is fully integrated with tensorboard.
|
||||
|
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## Lightning gives you options to control the following:
|
||||
<p align="center">
|
||||
<a href="https://williamfalcon.github.io/pytorch-lightning/">
|
||||
<img alt="" src="https://github.com/williamFalcon/pytorch-lightning/blob/master/docs/source/_static/tf_loss.png" width="900px">
|
||||
</a>
|
||||
</p>
|
||||
|
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**Checkpointing**
|
||||
Lightning also adds a text column with all the hyperparameters for this experiment.
|
||||
|
||||
- Model saving
|
||||
- Model loading
|
||||
<p align="center">
|
||||
<a href="https://williamfalcon.github.io/pytorch-lightning/">
|
||||
<img alt="" src="https://github.com/williamFalcon/pytorch-lightning/blob/master/docs/source/_static/tf_tags.png" width="900px">
|
||||
</a>
|
||||
</p>
|
||||
|
||||
**Computing cluster (SLURM)**
|
||||
Simply note the path you set for the Experiment
|
||||
``` {.python}
|
||||
from test_tube import Experiment
|
||||
from pytorch-lightning import Trainer
|
||||
|
||||
- Automatic checkpointing
|
||||
- Automatic saving, loading
|
||||
- Running grid search on a cluster
|
||||
- Walltime auto-resubmit
|
||||
exp = Experiment(save_dir='/some/path')
|
||||
trainer = Trainer(experiment=exp)
|
||||
...
|
||||
```
|
||||
|
||||
**Debugging**
|
||||
And run tensorboard from that dir
|
||||
```bash
|
||||
tensorboard --logdir /some/path
|
||||
```
|
||||
|
||||
## Lightning automatically automates all of the following ([each is also configurable](https://williamfalcon.github.io/pytorch-lightning/Trainer/)):
|
||||
|
||||
###### Checkpointing
|
||||
|
||||
- [Model saving](https://williamfalcon.github.io/pytorch-lightning/Trainer/Checkpointing/#model-saving)
|
||||
- [Model loading](https://williamfalcon.github.io/pytorch-lightning/LightningModule/methods/#load-from-metrics)
|
||||
|
||||
###### Computing cluster (SLURM)
|
||||
|
||||
- [Running grid search on a cluster](https://williamfalcon.github.io/pytorch-lightning/Trainer/SLURM%20Managed%20Cluster#running-grid-search-on-a-cluster)
|
||||
- [Walltime auto-resubmit](https://williamfalcon.github.io/pytorch-lightning/Trainer/SLURM%20Managed%20Cluster#walltime-auto-resubmit)
|
||||
|
||||
###### Debugging
|
||||
|
||||
- [Fast dev run](https://williamfalcon.github.io/pytorch-lightning/Trainer/debugging/#fast-dev-run)
|
||||
- [Inspect gradient norms](https://williamfalcon.github.io/pytorch-lightning/Trainer/debugging/#inspect-gradient-norms)
|
||||
@@ -109,7 +170,7 @@ def validation_end(self, outputs):
|
||||
- [Pring which gradients are nan](https://williamfalcon.github.io/pytorch-lightning/Trainer/debugging/#print-which-gradients-are-nan)
|
||||
|
||||
|
||||
**Distributed training**
|
||||
###### Distributed training
|
||||
|
||||
- [16-bit mixed precision](https://williamfalcon.github.io/pytorch-lightning/Trainer/Distributed%20training/#16-bit-mixed-precision)
|
||||
- [Multi-GPU](https://williamfalcon.github.io/pytorch-lightning/Trainer/Distributed%20training/#Multi-GPU)
|
||||
@@ -118,26 +179,27 @@ def validation_end(self, outputs):
|
||||
- [Self-balancing architecture](https://williamfalcon.github.io/pytorch-lightning/Trainer/Distributed%20training/#self-balancing-architecture)
|
||||
|
||||
|
||||
**Experiment Logging**
|
||||
###### Experiment Logging
|
||||
|
||||
- [Display metrics in progress bar](https://williamfalcon.github.io/pytorch-lightning/Trainer/Logging/#display-metrics-in-progress-bar)
|
||||
- Log arbitrary metrics
|
||||
- [Log metric row every k batches](https://williamfalcon.github.io/pytorch-lightning/Trainer/Logging/#log-metric-row-every-k-batches)
|
||||
- [Process position](Logging/#process-position)
|
||||
- [Process position](https://williamfalcon.github.io/pytorch-lightning/Trainer/Logging/#process-position)
|
||||
- [Save a snapshot of all hyperparameters](https://williamfalcon.github.io/pytorch-lightning/Trainer/Logging/#save-a-snapshot-of-all-hyperparameters)
|
||||
- [Snapshot code for a training run](https://williamfalcon.github.io/pytorch-lightning/Trainer/Logging/#snapshot-code-for-a-training-run)
|
||||
- [Write logs file to csv every k batches](https://williamfalcon.github.io/pytorch-lightning/Trainer/Logging/#write-logs-file-to-csv-every-k-batches)
|
||||
|
||||
**Training loop**
|
||||
###### Training loop
|
||||
|
||||
- [Accumulate gradients](https://williamfalcon.github.io/pytorch-lightning/Trainer/Training%20Loop/#accumulated-gradients)
|
||||
- [Anneal Learning rate](https://williamfalcon.github.io/pytorch-lightning/Trainer/Training%20Loop/#anneal-learning-rate)
|
||||
- [Force training for min or max epochs](https://williamfalcon.github.io/pytorch-lightning/Trainer/Training%20Loop/#force-training-for-min-or-max-epochs)
|
||||
- [Force disable early stop](https://williamfalcon.github.io/pytorch-lightning/Trainer/Training%20Loop/#force-disable-early-stop)
|
||||
- [Gradient Clipping](https://williamfalcon.github.io/pytorch-lightning/Trainer/Training%20Loop/#gradient-clipping)
|
||||
- [Use multiple optimizers (like GANs)](https://williamfalcon.github.io/pytorch-lightning/Pytorch-Lightning/LightningModule/#configure_optimizers)
|
||||
- [Set how much of the training set to check (1-100%)](https://williamfalcon.github.io/pytorch-lightning/Trainer/Training%20Loop/#set-how-much-of-the-training-set-to-check)
|
||||
|
||||
**Validation loop**
|
||||
###### Validation loop
|
||||
|
||||
- [Check validation every n epochs](https://williamfalcon.github.io/pytorch-lightning/Trainer/Validation%20loop/#check-validation-every-n-epochs)
|
||||
- [Set how much of the validation set to check](https://williamfalcon.github.io/pytorch-lightning/Trainer/Validation%20loop/#set-how-much-of-the-validation-set-to-check)
|
||||
|
||||
+14
-14
@@ -1,4 +1,4 @@
|
||||
# Lightning module
|
||||
# Lightning Module interface
|
||||
[[Github Code](https://github.com/williamFalcon/pytorch-lightning/blob/master/pytorch_lightning/root_module/root_module.py)]
|
||||
|
||||
A lightning module is a strict superclass of nn.Module, it provides a standard interface for the trainer to interact with the model.
|
||||
@@ -9,22 +9,22 @@ Otherwise, to Define a Lightning Module, implement the following methods:
|
||||
|
||||
**Required**:
|
||||
|
||||
- [training_step](LightningModule.md#training_step)
|
||||
- [validation_step](LightningModule.md#validation_step)
|
||||
- [validation_end](LightningModule.md#validation_end)
|
||||
- [training_step](RequiredTrainerInterface.md#training_step)
|
||||
- [validation_step](RequiredTrainerInterface.md#validation_step)
|
||||
- [validation_end](RequiredTrainerInterface.md#validation_end)
|
||||
|
||||
- [configure_optimizers](LightningModule.md#configure_optimizers)
|
||||
- [get_save_dict](LightningModule.md#get_save_dict)
|
||||
- [load_model_specific](LightningModule.md#load_model_specific)
|
||||
- [configure_optimizers](RequiredTrainerInterface.md#configure_optimizers)
|
||||
- [get_save_dict](RequiredTrainerInterface.md#get_save_dict)
|
||||
- [load_model_specific](RequiredTrainerInterface.md#load_model_specific)
|
||||
|
||||
- [tng_dataloader](LightningModule.md#tng_dataloader)
|
||||
- [tng_dataloader](LightningModule.md#tng_dataloader)
|
||||
- [test_dataloader](LightningModule.md#test_dataloader)
|
||||
- [tng_dataloader](RequiredTrainerInterface.md#tng_dataloader)
|
||||
- [tng_dataloader](RequiredTrainerInterface.md#tng_dataloader)
|
||||
- [test_dataloader](RequiredTrainerInterface.md#test_dataloader)
|
||||
|
||||
**Optional**:
|
||||
|
||||
- [update_tng_log_metrics](LightningModule.md#update_tng_log_metrics)
|
||||
- [add_model_specific_args](LightningModule.md#add_model_specific_args)
|
||||
- [update_tng_log_metrics](RequiredTrainerInterface.md#update_tng_log_metrics)
|
||||
- [add_model_specific_args](RequiredTrainerInterface.md#add_model_specific_args)
|
||||
|
||||
---
|
||||
|
||||
@@ -361,7 +361,7 @@ def add_model_specific_args(parent_parser, root_dir)
|
||||
```
|
||||
Lightning has a list of default argparse commands.
|
||||
This method is your chance to add or modify commands specific to your model.
|
||||
The argument parser is available anywhere in your model by calling self.hparams
|
||||
The [hyperparameter argument parser](https://williamfalcon.github.io/test-tube/hyperparameter_optimization/HyperOptArgumentParser/) is available anywhere in your model by calling self.hparams.
|
||||
|
||||
##### Return
|
||||
An argument parser
|
||||
@@ -391,4 +391,4 @@ def add_model_specific_args(parent_parser, root_dir):
|
||||
parser.opt_list('--batch_size', default=256, type=int, options=[32, 64, 128, 256], tunable=False)
|
||||
parser.opt_list('--optimizer_name', default='adam', type=str, options=['adam'], tunable=False)
|
||||
return parser
|
||||
```
|
||||
```
|
||||
@@ -0,0 +1,49 @@
|
||||
Lightning modules are strict superclasses of torch.nn.Module. A LightningModule offers the following in addition to that API.
|
||||
|
||||
---
|
||||
### freeze
|
||||
Freeze all params for inference
|
||||
```{.python}
|
||||
model = MyLightningModule(...)
|
||||
model.freeze()
|
||||
```
|
||||
|
||||
---
|
||||
### load_from_metrics
|
||||
This is the easiest/fastest way which uses the meta_tags.csv file from test-tube to rebuild the model.
|
||||
The meta_tags.csv file can be found in the test-tube experiment save_dir.
|
||||
|
||||
```{.python}
|
||||
pretrained_model = MyLightningModule.load_from_metrics(
|
||||
weights_path='/path/to/pytorch_checkpoint.ckpt',
|
||||
tags_csv='/path/to/test_tube/experiment/version/meta_tags.csv',
|
||||
on_gpu=True,
|
||||
map_location=None
|
||||
)
|
||||
|
||||
# predict
|
||||
pretrained_model.freeze()
|
||||
y_hat = pretrained_model(x)
|
||||
```
|
||||
|
||||
**Params**
|
||||
|
||||
| Param | description |
|
||||
|---|---|
|
||||
| weights_path | Path to a pytorch checkpoint |
|
||||
| tags_csv | Path to meta_tags.csv file generated by the test-tube Experiment |
|
||||
| on_gpu | if True, puts model on GPU. Make sure to use transforms option if model devices have changed |
|
||||
| map_location | A dictionary mapping saved weight GPU devices to new GPU devices |
|
||||
|
||||
**Returns**
|
||||
|
||||
LightningModule - The pretrained LightningModule
|
||||
|
||||
---
|
||||
### unfreeze
|
||||
Unfreeze all params for inference
|
||||
```{.python}
|
||||
model = MyLightningModule(...)
|
||||
model.unfreeze()
|
||||
```
|
||||
|
||||
@@ -0,0 +1,40 @@
|
||||
A LightningModule has the following properties which you can access at any time
|
||||
|
||||
---
|
||||
#### current_epoch
|
||||
The current epoch
|
||||
|
||||
---
|
||||
#### dtype
|
||||
Current dtype
|
||||
|
||||
---
|
||||
#### experiment
|
||||
An instance of test-tube Experiment which you can use to log anything for tensorboarX.
|
||||
```{.python}
|
||||
self.experiment.add_embedding(...)
|
||||
self.experiment.log({'val_loss': 0.9})
|
||||
self.experiment.add_scalars(...)
|
||||
```
|
||||
|
||||
---
|
||||
#### global_step
|
||||
Total training batches seen across all epochs
|
||||
|
||||
---
|
||||
#### gradient_clip
|
||||
The current gradient clip value
|
||||
|
||||
---
|
||||
#### on_gpu
|
||||
True if your model is currently running on GPUs. Useful to set flags around the LightningModule for different CPU vs GPU behavior.
|
||||
|
||||
---
|
||||
#### trainer
|
||||
Last resort access to any state the trainer has. Changing certain properties here could affect your training run.
|
||||
```{.python}
|
||||
self.trainer.optimizers
|
||||
self.trainer.current_epoch
|
||||
...
|
||||
```
|
||||
|
||||
@@ -0,0 +1,22 @@
|
||||
Lightning can automate saving and loading checkpoints.
|
||||
|
||||
---
|
||||
### Model saving
|
||||
To enable checkpointing, define the checkpoint callback and give it to the trainer.
|
||||
|
||||
``` {.python}
|
||||
from pytorch_lightning.utils.pt_callbacks import ModelCheckpoint
|
||||
|
||||
checkpoint_callback = ModelCheckpoint(
|
||||
filepath='/path/to/store/weights.ckpt',
|
||||
save_best_only=True,
|
||||
verbose=True,
|
||||
monitor='val_loss',
|
||||
mode='min'
|
||||
)
|
||||
|
||||
trainer = Trainer(checkpoint_callback=checkpoint_callback)
|
||||
```
|
||||
|
||||
|
||||
|
||||
|
||||
@@ -3,6 +3,26 @@ Lightning makes multi-gpu training and 16 bit training trivial.
|
||||
*Note:*
|
||||
None of the flags below require changing anything about your lightningModel definition.
|
||||
|
||||
---
|
||||
#### Choosing a backend
|
||||
Lightning supports two backends. DataParallel and DistributedDataParallel. Both can be used for single-node multi-GPU training.
|
||||
For multi-node training you must use DistributedDataParallel.
|
||||
|
||||
You can toggle between each mode by setting this flag.
|
||||
``` {.python}
|
||||
# DEFAULT uses DataParallel
|
||||
trainer = Trainer(distributed_backend='dp')
|
||||
|
||||
# change to distributed data parallel
|
||||
trainer = Trainer(distributed_backend='ddp')
|
||||
```
|
||||
|
||||
If you request multiple nodes, the back-end will auto-switch to ddp.
|
||||
We recommend you use DistributedDataparallel even for single-node multi-GPU training. It is MUCH faster than DP but *may*
|
||||
have configuration issues depending on your cluster.
|
||||
|
||||
For a deeper understanding of what lightning is doing, feel free to read [this guide](https://medium.com/@_willfalcon/9-tips-for-training-lightning-fast-neural-networks-in-pytorch-8e63a502f565).
|
||||
|
||||
---
|
||||
#### 16-bit mixed precision
|
||||
16 bit precision can cut your memory footprint by half. If using volta architecture GPUs it can give a dramatic training speed-up as well.
|
||||
@@ -37,16 +57,69 @@ Make sure you're on a GPU machine. You can set as many GPUs as you want.
|
||||
In this setting, the model will run on all 8 GPUs at once using DataParallel under the hood.
|
||||
```python
|
||||
# set these flags
|
||||
os.environ["CUDA_DEVICE_ORDER"] = "PCI_BUS_ID"
|
||||
os.environ["CUDA_VISIBLE_DEVICES"] = "0,1,2,3,4,5,6,7"
|
||||
# lightning sets these flags for you automatically
|
||||
# no need to set yourself
|
||||
# os.environ["CUDA_DEVICE_ORDER"] = "PCI_BUS_ID"
|
||||
# os.environ["CUDA_VISIBLE_DEVICES"] = "0,1,2,3,4,5,6,7"
|
||||
|
||||
# DEFAULT
|
||||
trainer = Trainer(gpus=[0,1,2,3,4,5,6,7])
|
||||
|
||||
# to use DataParallel (default)
|
||||
trainer = Trainer(gpus=[0,1,2,3,4,5,6,7], distributed_backend='dp')
|
||||
|
||||
# RECOMMENDED use DistributedDataParallel
|
||||
trainer = Trainer(gpus=[0,1,2,3,4,5,6,7], distributed_backend='ddp')
|
||||
```
|
||||
|
||||
---
|
||||
#### Multi-node
|
||||
COMING SOON.
|
||||
Multi-node training is easily done by specifying these flags.
|
||||
```python
|
||||
# train on 12*8 GPUs
|
||||
trainer = Trainer(gpus=[0,1,2,3,4,5,6,7], nb_gpu_nodes=12)
|
||||
```
|
||||
|
||||
In addition, make sure to set up your SLURM job correctly via the [SlurmClusterObject](https://williamfalcon.github.io/test-tube/hpc/SlurmCluster/). In particular, specify the number of tasks per node correctly.
|
||||
|
||||
```python
|
||||
cluster = SlurmCluster(
|
||||
hyperparam_optimizer=test_tube.HyperOptArgumentParser(),
|
||||
log_path='/some/path/to/save',
|
||||
)
|
||||
|
||||
# OPTIONAL FLAGS WHICH MAY BE CLUSTER DEPENDENT
|
||||
# which interface your nodes use for communication
|
||||
cluster.add_command('export NCCL_SOCKET_IFNAME=^docker0,lo')
|
||||
|
||||
# see output of the NCCL connection process
|
||||
# NCCL is how the nodes talk to each other
|
||||
cluster.add_command('export NCCL_DEBUG=INFO')
|
||||
|
||||
# setting a master port here is a good idea.
|
||||
cluster.add_command(f'export MASTER_PORT={PORT}')
|
||||
|
||||
# good to load the latest NCCL version
|
||||
cluster.load_modules(['NCCL/2.4.7-1-cuda.10.0'])
|
||||
|
||||
# configure cluster
|
||||
cluster.per_experiment_nb_nodes = 12
|
||||
cluster.per_experiment_nb_gpus = 8
|
||||
|
||||
cluster.add_slurm_cmd(cmd='ntasks-per-node', value=8, comment='1 task per gpu')
|
||||
```
|
||||
|
||||
Finally, make sure to add a distributed sampler to your dataset. The distributed sampler copies a
|
||||
portion of your dataset onto each GPU. (World_size = gpus_per_node * nb_nodes).
|
||||
|
||||
```python
|
||||
# ie: this:
|
||||
dataset = myDataset()
|
||||
dataloader = Dataloader(dataset)
|
||||
|
||||
# becomes:
|
||||
dataset = myDataset()
|
||||
dist_sampler = torch.utils.data.distributed.DistributedSampler(dataset)
|
||||
dataloader = Dataloader(dataset, sampler=dist_sampler)
|
||||
```
|
||||
|
||||
---
|
||||
#### Self-balancing architecture
|
||||
|
||||
@@ -24,7 +24,7 @@ hparams = parser.parse_args()
|
||||
```
|
||||
|
||||
|
||||
(2). Define the cluster options (over 5 nodes and 8 gpus)
|
||||
(2). Define the cluster options in the [SlurmCluster object](https://williamfalcon.github.io/test-tube/hpc/SlurmCluster/) (over 5 nodes and 8 gpus)
|
||||
|
||||
```{.python}
|
||||
from test_tube.hpc import SlurmCluster
|
||||
|
||||
@@ -19,7 +19,7 @@ Cut the learning rate by 10 at every epoch listed in this list.
|
||||
trainer = Trainer(lr_scheduler_milestones=None)
|
||||
|
||||
# cut LR by 10 at 100, 200, and 300 epochs
|
||||
trainer = Trainer(lr_scheduler_milestones=[100, 200, 300])
|
||||
trainer = Trainer(lr_scheduler_milestones='100, 200, 300')
|
||||
```
|
||||
|
||||
---
|
||||
@@ -38,6 +38,16 @@ Use this to turn off early stopping and run training to the [max_epoch](#force-t
|
||||
trainer = Trainer(enable_early_stop=True)
|
||||
```
|
||||
|
||||
---
|
||||
#### Gradient Clipping
|
||||
Use this to turn off early stopping and run training to the [max_epoch](#force-training-for-min-or-max-epochs)
|
||||
``` {.python}
|
||||
# DEFAULT (ie: don't clip)
|
||||
trainer = Trainer(gradient_clip=0)
|
||||
```
|
||||
|
||||
|
||||
|
||||
---
|
||||
#### Inspect gradient norms
|
||||
Looking at grad norms can help you figure out where training might be going wrong.
|
||||
|
||||
@@ -24,10 +24,8 @@ But of course the fun is in all the advanced things it can do:
|
||||
|
||||
**Computing cluster (SLURM)**
|
||||
|
||||
- Automatic checkpointing
|
||||
- Automatic saving, loading
|
||||
- Running grid search on a cluster
|
||||
- Walltime auto-resubmit
|
||||
- [Running grid search on a cluster](SLURM%20Managed%20Cluster/#running-grid-search-on-a-cluster)
|
||||
- [Walltime auto-resubmit](SLURM%20Managed%20Cluster/#walltime-auto-resubmit)
|
||||
|
||||
**Debugging**
|
||||
|
||||
|
||||
@@ -0,0 +1,171 @@
|
||||
### Template model definition
|
||||
In 99% of cases you want to just copy [this template](https://github.com/williamFalcon/pytorch-lightning/blob/master/examples/new_project_templates/lightning_module_template.py) to start a new lightningModule and change the core of what your model is actually trying to do.
|
||||
|
||||
```bash
|
||||
# get a copy of the module template
|
||||
wget https://github.com/williamFalcon/pytorch-lightning/blob/master/examples/new_project_templates/lightning_module_template.py
|
||||
```
|
||||
|
||||
---
|
||||
### Trainer Example
|
||||
|
||||
** \_\_main__ function**
|
||||
|
||||
Normally, we want to let the \_\_main__ function start the training.
|
||||
Inside the main we parse training arguments with whatever hyperparameters we want. Your LightningModule will have a
|
||||
chance to add hyperparameters.
|
||||
|
||||
```{.python}
|
||||
from test_tube import HyperOptArgumentParser
|
||||
|
||||
if __name__ == '__main__':
|
||||
|
||||
# use default args given by lightning
|
||||
root_dir = os.path.split(os.path.dirname(sys.modules['__main__'].__file__))[0]
|
||||
parent_parser = HyperOptArgumentParser(strategy='random_search', add_help=False)
|
||||
add_default_args(parent_parser, root_dir)
|
||||
|
||||
# allow model to overwrite or extend args
|
||||
parser = ExampleModel.add_model_specific_args(parent_parser)
|
||||
hyperparams = parser.parse_args()
|
||||
|
||||
# train model
|
||||
main(hyperparams)
|
||||
```
|
||||
**Main Function**
|
||||
|
||||
The main function is your entry into the program. This is where you init your model, checkpoint directory, and launch the training.
|
||||
The main function should have 3 arguments:
|
||||
- hparams: a configuration of hyperparameters.
|
||||
- slurm_manager: Slurm cluster manager object (can be None)
|
||||
- dict: for you to return any values you want (useful in meta-learning, otherwise set to _)
|
||||
|
||||
```{}
|
||||
def main(hparams, cluster, results_dict):
|
||||
"""
|
||||
Main training routine specific for this project
|
||||
:param hparams:
|
||||
:return:
|
||||
"""
|
||||
# init experiment
|
||||
log_dir = os.path.dirname(os.path.realpath(__file__))
|
||||
exp = Experiment(
|
||||
name='test_tube_exp',
|
||||
debug=True,
|
||||
save_dir=log_dir,
|
||||
version=0,
|
||||
autosave=False,
|
||||
description='test demo'
|
||||
)
|
||||
|
||||
# set the hparams for the experiment
|
||||
exp.argparse(hparams)
|
||||
exp.save()
|
||||
|
||||
# build model
|
||||
model = MyLightningModule(hparams)
|
||||
|
||||
# callbacks
|
||||
early_stop = EarlyStopping(
|
||||
monitor=hparams.early_stop_metric,
|
||||
patience=hparams.early_stop_patience,
|
||||
verbose=True,
|
||||
mode=hparams.early_stop_mode
|
||||
)
|
||||
|
||||
model_save_path = '{}/{}/{}'.format(hparams.model_save_path, exp.name, exp.version)
|
||||
checkpoint = ModelCheckpoint(
|
||||
filepath=model_save_path,
|
||||
save_function=None,
|
||||
save_best_only=True,
|
||||
verbose=True,
|
||||
monitor=hparams.model_save_monitor_value,
|
||||
mode=hparams.model_save_monitor_mode
|
||||
)
|
||||
|
||||
# configure trainer
|
||||
trainer = Trainer(
|
||||
experiment=exp,
|
||||
cluster=cluster,
|
||||
checkpoint_callback=checkpoint,
|
||||
early_stop_callback=early_stop,
|
||||
)
|
||||
|
||||
# train model
|
||||
trainer.fit(model)
|
||||
```
|
||||
|
||||
|
||||
|
||||
|
||||
The __main__ function will start training on your **main** function. If you use the HyperParameterOptimizer
|
||||
in hyper parameter optimization mode, this main function will get one set of hyperparameters. If you use it as a simple
|
||||
argument parser you get the default arguments in the argument parser.
|
||||
|
||||
So, calling main(hyperparams) runs the model with the default argparse arguments.
|
||||
```{.python}
|
||||
main(hyperparams)
|
||||
```
|
||||
|
||||
---
|
||||
#### CPU hyperparameter search
|
||||
|
||||
```{.python}
|
||||
# run a grid search over 20 hyperparameter combinations.
|
||||
hyperparams.optimize_parallel_cpu(
|
||||
main_local,
|
||||
nb_trials=20,
|
||||
nb_workers=1
|
||||
)
|
||||
```
|
||||
|
||||
---
|
||||
#### Hyperparameter search on a single or multiple GPUs
|
||||
```{.python}
|
||||
# run a grid search over 20 hyperparameter combinations.
|
||||
hyperparams.optimize_parallel_gpu(
|
||||
main_local,
|
||||
nb_trials=20,
|
||||
nb_workers=1,
|
||||
gpus=[0,1,2,3]
|
||||
)
|
||||
```
|
||||
|
||||
---
|
||||
#### Hyperparameter search on a SLURM HPC cluster
|
||||
```{.python}
|
||||
def optimize_on_cluster(hyperparams):
|
||||
# enable cluster training
|
||||
cluster = SlurmCluster(
|
||||
hyperparam_optimizer=hyperparams,
|
||||
log_path=hyperparams.tt_save_path,
|
||||
test_tube_exp_name=hyperparams.tt_name
|
||||
)
|
||||
|
||||
# email for cluster coms
|
||||
cluster.notify_job_status(email='add_email_here', on_done=True, on_fail=True)
|
||||
|
||||
# configure cluster
|
||||
cluster.per_experiment_nb_gpus = hyperparams.per_experiment_nb_gpus
|
||||
cluster.job_time = '48:00:00'
|
||||
cluster.gpu_type = '1080ti'
|
||||
cluster.memory_mb_per_node = 48000
|
||||
|
||||
# any modules for code to run in env
|
||||
cluster.add_command('source activate pytorch_lightning')
|
||||
|
||||
# name of exp
|
||||
job_display_name = hyperparams.tt_name.split('_')[0]
|
||||
job_display_name = job_display_name[0:3]
|
||||
|
||||
# run hopt
|
||||
print('submitting jobs...')
|
||||
cluster.optimize_parallel_cluster_gpu(
|
||||
main,
|
||||
nb_trials=hyperparams.nb_hopt_trials,
|
||||
job_name=job_display_name
|
||||
)
|
||||
|
||||
# run cluster hyperparameter search
|
||||
optimize_on_cluster(hyperparams)
|
||||
```
|
||||
+22
-23
@@ -1,35 +1,33 @@
|
||||
# PYTORCH-LIGHTNING DOCUMENTATION
|
||||
###### New project Quick Start
|
||||
To start a new project define these two files.
|
||||
|
||||
###### Main Docs
|
||||
- [LightningModule](Pytorch-Lightning/LightningModule)
|
||||
- [Trainer](Trainer/)
|
||||
|
||||
###### New project Quick Start
|
||||
1. [Define a LightningModule](https://github.com/williamFalcon/pytorch-lightning/blob/master/examples/new_project_templates/lightning_module_template.py)
|
||||
1. [Define a LightningModule](/LightningModule/RequiredTrainerInterface/#template-model-definition)
|
||||
2. Pick a trainer
|
||||
- [Basic CPU Trainer](https://github.com/williamFalcon/pytorch-lightning/blob/master/examples/new_project_templates/trainer_cpu_template.py)
|
||||
- [GPU cluster Trainer](https://github.com/williamFalcon/pytorch-lightning/blob/master/examples/new_project_templates/trainer_gpu_cluster_template.py)
|
||||
|
||||
###### Docs shortcuts
|
||||
- [LightningModule](LightningModule/RequiredTrainerInterface/)
|
||||
- [Trainer](Trainer/)
|
||||
|
||||
###### Quick start examples
|
||||
- CPU example
|
||||
- Single GPU example
|
||||
- Multi-gpu example
|
||||
- SLURM cluster grid search example
|
||||
- [CPU example](examples/Examples/#cpu-hyperparameter-search)
|
||||
- [Hyperparameter search on single GPU](examples/Examples/#hyperparameter-search-on-a-single-or-multiple-gpus)
|
||||
- [Hyperparameter search on multiple GPUs on same node](examples/Examples/#hyperparameter-search-on-a-single-or-multiple-gpus)
|
||||
- [Hyperparameter search on a SLURM HPC cluster](examples/Examples/#Hyperparameter search on a SLURM HPC cluster)
|
||||
|
||||
|
||||
###### Checkpointing
|
||||
|
||||
- Model saving
|
||||
- Model loading
|
||||
- [Model saving](https://williamfalcon.github.io/pytorch-lightning/Trainer/Checkpointing/#model-saving)
|
||||
- [Model loading](https://williamfalcon.github.io/pytorch-lightning/LightningModule/methods/#load-from-metrics)
|
||||
|
||||
######Computing cluster (SLURM)
|
||||
###### Computing cluster (SLURM)
|
||||
|
||||
- Automatic checkpointing
|
||||
- Automatic saving, loading
|
||||
- Running grid search on a cluster
|
||||
- Walltime auto-resubmit
|
||||
- [Running grid search on a cluster](https://williamfalcon.github.io/pytorch-lightning/Trainer/SLURM%20Managed%20Cluster#running-grid-search-on-a-cluster)
|
||||
- [Walltime auto-resubmit](https://williamfalcon.github.io/pytorch-lightning/Trainer/SLURM%20Managed%20Cluster#walltime-auto-resubmit)
|
||||
|
||||
######Debugging
|
||||
###### Debugging
|
||||
|
||||
- [Fast dev run](https://williamfalcon.github.io/pytorch-lightning/Trainer/debugging/#fast-dev-run)
|
||||
- [Inspect gradient norms](https://williamfalcon.github.io/pytorch-lightning/Trainer/debugging/#inspect-gradient-norms)
|
||||
@@ -39,7 +37,7 @@
|
||||
- [Pring which gradients are nan](https://williamfalcon.github.io/pytorch-lightning/Trainer/debugging/#print-which-gradients-are-nan)
|
||||
|
||||
|
||||
######Distributed training
|
||||
###### Distributed training
|
||||
|
||||
- [16-bit mixed precision](https://williamfalcon.github.io/pytorch-lightning/Trainer/Distributed%20training/#16-bit-mixed-precision)
|
||||
- [Multi-GPU](https://williamfalcon.github.io/pytorch-lightning/Trainer/Distributed%20training/#Multi-GPU)
|
||||
@@ -48,22 +46,23 @@
|
||||
- [Self-balancing architecture](https://williamfalcon.github.io/pytorch-lightning/Trainer/Distributed%20training/#self-balancing-architecture)
|
||||
|
||||
|
||||
######Experiment Logging
|
||||
###### Experiment Logging
|
||||
|
||||
- [Display metrics in progress bar](https://williamfalcon.github.io/pytorch-lightning/Trainer/Logging/#display-metrics-in-progress-bar)
|
||||
- Log arbitrary metrics
|
||||
- [Log metric row every k batches](https://williamfalcon.github.io/pytorch-lightning/Trainer/Logging/#log-metric-row-every-k-batches)
|
||||
- [Process position](Logging/#process-position)
|
||||
- [Process position](https://williamfalcon.github.io/pytorch-lightning/Trainer/Logging/#process-position)
|
||||
- [Save a snapshot of all hyperparameters](https://williamfalcon.github.io/pytorch-lightning/Trainer/Logging/#save-a-snapshot-of-all-hyperparameters)
|
||||
- [Snapshot code for a training run](https://williamfalcon.github.io/pytorch-lightning/Trainer/Logging/#snapshot-code-for-a-training-run)
|
||||
- [Write logs file to csv every k batches](https://williamfalcon.github.io/pytorch-lightning/Trainer/Logging/#write-logs-file-to-csv-every-k-batches)
|
||||
|
||||
######Training loop
|
||||
###### Training loop
|
||||
|
||||
- [Accumulate gradients](https://williamfalcon.github.io/pytorch-lightning/Trainer/Training%20Loop/#accumulated-gradients)
|
||||
- [Anneal Learning rate](https://williamfalcon.github.io/pytorch-lightning/Trainer/Training%20Loop/#anneal-learning-rate)
|
||||
- [Force training for min or max epochs](https://williamfalcon.github.io/pytorch-lightning/Trainer/Training%20Loop/#force-training-for-min-or-max-epochs)
|
||||
- [Force disable early stop](https://williamfalcon.github.io/pytorch-lightning/Trainer/Training%20Loop/#force-disable-early-stop)
|
||||
- [Gradient Clipping](https://williamfalcon.github.io/pytorch-lightning/Trainer/Training%20Loop/#gradient-clipping)
|
||||
- [Use multiple optimizers (like GANs)](https://williamfalcon.github.io/pytorch-lightning/Pytorch-Lightning/LightningModule/#configure_optimizers)
|
||||
- [Set how much of the training set to check (1-100%)](https://williamfalcon.github.io/pytorch-lightning/Trainer/Training%20Loop/#set-how-much-of-the-training-set-to-check)
|
||||
|
||||
|
||||
Binary file not shown.
|
After Width: | Height: | Size: 219 KiB |
Binary file not shown.
|
After Width: | Height: | Size: 214 KiB |
@@ -1 +0,0 @@
|
||||
from .example_model import ExampleModel
|
||||
@@ -1,74 +0,0 @@
|
||||
import os
|
||||
import sys
|
||||
|
||||
from test_tube import HyperOptArgumentParser, Experiment
|
||||
from pytorch_lightning.models.trainer import Trainer
|
||||
from pytorch_lightning.utils.arg_parse import add_default_args
|
||||
from pytorch_lightning.callbacks.pt_callbacks import EarlyStopping, ModelCheckpoint
|
||||
from docs.source.examples.example_model import ExampleModel
|
||||
|
||||
|
||||
def main(hparams):
|
||||
"""
|
||||
Main training routine specific for this project
|
||||
:param hparams:
|
||||
:return:
|
||||
"""
|
||||
# init experiment
|
||||
exp = Experiment(
|
||||
name=hparams.tt_name,
|
||||
debug=hparams.debug,
|
||||
save_dir=hparams.tt_save_path,
|
||||
version=hparams.hpc_exp_number,
|
||||
autosave=False,
|
||||
description=hparams.tt_description
|
||||
)
|
||||
|
||||
exp.argparse(hparams)
|
||||
exp.save()
|
||||
|
||||
# build model
|
||||
model = ExampleModel(hparams)
|
||||
|
||||
# callbacks
|
||||
early_stop = EarlyStopping(
|
||||
monitor='val_acc',
|
||||
patience=3,
|
||||
mode='min',
|
||||
verbose=True,
|
||||
)
|
||||
|
||||
model_save_path = '{}/{}/{}'.format(hparams.model_save_path, exp.name, exp.version)
|
||||
checkpoint = ModelCheckpoint(
|
||||
filepath=model_save_path,
|
||||
save_function=None,
|
||||
save_best_only=True,
|
||||
verbose=True,
|
||||
monitor='val_acc',
|
||||
mode='min'
|
||||
)
|
||||
|
||||
# configure trainer
|
||||
trainer = Trainer(
|
||||
experiment=exp,
|
||||
checkpoint_callback=checkpoint,
|
||||
early_stop_callback=early_stop,
|
||||
)
|
||||
|
||||
# train model
|
||||
trainer.fit(model)
|
||||
|
||||
|
||||
if __name__ == '__main__':
|
||||
|
||||
# use default args given by lightning
|
||||
root_dir = os.path.split(os.path.dirname(sys.modules['__main__'].__file__))[0]
|
||||
parent_parser = HyperOptArgumentParser(strategy='random_search', add_help=False)
|
||||
add_default_args(parent_parser, root_dir)
|
||||
|
||||
# allow model to overwrite or extend args
|
||||
parser = ExampleModel.add_model_specific_args(parent_parser)
|
||||
hyperparams = parser.parse_args()
|
||||
|
||||
# train model
|
||||
main(hyperparams)
|
||||
@@ -1,211 +0,0 @@
|
||||
import torch.nn as nn
|
||||
import numpy as np
|
||||
from pytorch_lightning.root_module.root_module import LightningModule
|
||||
from test_tube import HyperOptArgumentParser
|
||||
from torchvision.datasets import MNIST
|
||||
import torchvision.transforms as transforms
|
||||
import torch
|
||||
import torch.nn.functional as F
|
||||
import os, pdb
|
||||
from collections import OrderedDict
|
||||
|
||||
|
||||
class ExampleModel(LightningModule):
|
||||
"""
|
||||
Sample model to show how to define a template
|
||||
"""
|
||||
|
||||
def __init__(self, hparams):
|
||||
# init superclass
|
||||
super(ExampleModel, self).__init__(hparams)
|
||||
|
||||
self.batch_size = hparams.batch_size
|
||||
|
||||
# build model
|
||||
self.__build_model()
|
||||
|
||||
# ---------------------
|
||||
# MODEL SETUP
|
||||
# ---------------------
|
||||
def __build_model(self):
|
||||
"""
|
||||
Layout model
|
||||
:return:
|
||||
"""
|
||||
self.c_d1 = nn.Linear(in_features=self.hparams.in_features, out_features=self.hparams.hidden_dim)
|
||||
self.c_d1_bn = nn.BatchNorm1d(self.hparams.hidden_dim)
|
||||
self.c_d1_drop = nn.Dropout(self.hparams.drop_prob)
|
||||
|
||||
self.c_d2 = nn.Linear(in_features=self.hparams.hidden_dim, out_features=self.hparams.out_features)
|
||||
|
||||
# ---------------------
|
||||
# TRAINING
|
||||
# ---------------------
|
||||
def forward(self, x):
|
||||
|
||||
x = self.c_d1(x)
|
||||
x = torch.tanh(x)
|
||||
x = self.c_d1_bn(x)
|
||||
x = self.c_d1_drop(x)
|
||||
|
||||
x = self.c_d2(x)
|
||||
logits = F.log_softmax(x, dim=1)
|
||||
|
||||
return logits
|
||||
|
||||
def loss(self, labels, logits):
|
||||
nll = F.nll_loss(logits, labels)
|
||||
return nll
|
||||
|
||||
def training_step(self, data_batch, batch_i):
|
||||
"""
|
||||
Called inside the training loop
|
||||
:param data_batch:
|
||||
:return:
|
||||
"""
|
||||
# forward pass
|
||||
x, y = data_batch
|
||||
x = x.view(x.size(0), -1)
|
||||
y_hat = self.forward(x)
|
||||
|
||||
# calculate loss
|
||||
loss_val = self.loss(y, y_hat)
|
||||
|
||||
output = OrderedDict({
|
||||
'loss': loss_val,
|
||||
'tqdm_metrics': {}
|
||||
})
|
||||
return output
|
||||
|
||||
def validation_step(self, data_batch, batch_i):
|
||||
"""
|
||||
Called inside the validation loop
|
||||
:param data_batch:
|
||||
:return:
|
||||
"""
|
||||
x, y = data_batch
|
||||
x = x.view(x.size(0), -1)
|
||||
y_hat = self.forward(x)
|
||||
|
||||
loss_val = self.loss(y, y_hat)
|
||||
|
||||
# acc
|
||||
labels_hat = torch.argmax(y_hat, dim=1)
|
||||
val_acc = torch.sum(y == labels_hat).item() / (len(y) * 1.0)
|
||||
|
||||
output = OrderedDict({
|
||||
'val_loss': loss_val,
|
||||
'val_acc': torch.tensor(val_acc),
|
||||
})
|
||||
return output
|
||||
|
||||
|
||||
def validation_end(self, outputs):
|
||||
"""
|
||||
Called at the end of validation to aggregate outputs
|
||||
:param outputs: list of individual outputs of each validation step
|
||||
:return:
|
||||
"""
|
||||
val_loss_mean = 0
|
||||
val_acc_mean = 0
|
||||
for output in outputs:
|
||||
val_loss_mean += output['val_loss']
|
||||
val_acc_mean += output['val_acc']
|
||||
|
||||
val_loss_mean /= len(outputs)
|
||||
val_acc_mean /= len(outputs)
|
||||
tqdm_dic = {'val_loss': val_loss_mean.item(), 'val_acc': val_acc_mean.item()}
|
||||
return tqdm_dic
|
||||
|
||||
def update_tng_log_metrics(self, logs):
|
||||
return logs
|
||||
|
||||
# ---------------------
|
||||
# MODEL SAVING
|
||||
# ---------------------
|
||||
def get_save_dict(self):
|
||||
checkpoint = {'state_dict': self.state_dict()}
|
||||
return checkpoint
|
||||
|
||||
def load_model_specific(self, checkpoint):
|
||||
self.load_state_dict(checkpoint['state_dict'])
|
||||
pass
|
||||
|
||||
# ---------------------
|
||||
# TRAINING SETUP
|
||||
# ---------------------
|
||||
def configure_optimizers(self):
|
||||
"""
|
||||
return whatever optimizers we want here
|
||||
:return: list of optimizers
|
||||
"""
|
||||
optimizer = self.choose_optimizer(self.hparams.optimizer_name, self.parameters(), {'lr': self.hparams.learning_rate}, 'optimizer')
|
||||
self.optimizers = [optimizer]
|
||||
return self.optimizers
|
||||
|
||||
def __dataloader(self, train):
|
||||
# init data generators
|
||||
transform = transforms.Compose([transforms.ToTensor(), transforms.Normalize((0.5,), (1.0,))])
|
||||
|
||||
dataset = MNIST(root=self.hparams.data_root, train=train, transform=transform, download=True)
|
||||
|
||||
loader = torch.utils.data.DataLoader(
|
||||
dataset=dataset,
|
||||
batch_size=self.hparams.batch_size,
|
||||
shuffle=True
|
||||
)
|
||||
|
||||
return loader
|
||||
|
||||
@property
|
||||
def tng_dataloader(self):
|
||||
if self._tng_dataloader is None:
|
||||
try:
|
||||
self._tng_dataloader = self.__dataloader(train=True)
|
||||
except Exception as e:
|
||||
print(e)
|
||||
raise e
|
||||
return self._tng_dataloader
|
||||
|
||||
@property
|
||||
def val_dataloader(self):
|
||||
if self._val_dataloader is None:
|
||||
try:
|
||||
self._val_dataloader = self.__dataloader(train=False)
|
||||
except Exception as e:
|
||||
print(e)
|
||||
raise e
|
||||
return self._val_dataloader
|
||||
|
||||
@property
|
||||
def test_dataloader(self):
|
||||
if self._test_dataloader is None:
|
||||
try:
|
||||
self._test_dataloader = self.__dataloader(train=False)
|
||||
except Exception as e:
|
||||
print(e)
|
||||
raise e
|
||||
return self._test_dataloader
|
||||
|
||||
@staticmethod
|
||||
def add_model_specific_args(parent_parser, root_dir):
|
||||
parser = HyperOptArgumentParser(strategy=parent_parser.strategy, parents=[parent_parser])
|
||||
|
||||
# param overwrites
|
||||
# parser.set_defaults(gradient_clip=5.0)
|
||||
|
||||
# network params
|
||||
parser.opt_list('--drop_prob', default=0.2, options=[0.2, 0.5], type=float, tunable=False)
|
||||
parser.add_argument('--in_features', default=28*28)
|
||||
parser.add_argument('--out_features', default=10)
|
||||
parser.add_argument('--hidden_dim', default=50000) # use 500 for CPU, 50000 for GPU to see speed difference
|
||||
|
||||
# data
|
||||
parser.add_argument('--data_root', default=os.path.join(root_dir, 'mnist'), type=str)
|
||||
|
||||
# training params (opt)
|
||||
parser.opt_list('--learning_rate', default=0.001, type=float, options=[0.0001, 0.0005, 0.001, 0.005],
|
||||
tunable=False)
|
||||
parser.opt_list('--batch_size', default=256, type=int, options=[32, 64, 128, 256], tunable=False)
|
||||
parser.opt_list('--optimizer_name', default='adam', type=str, options=['adam'], tunable=False)
|
||||
return parser
|
||||
@@ -1,210 +0,0 @@
|
||||
import os
|
||||
import sys
|
||||
import numpy as np
|
||||
from time import sleep
|
||||
import torch
|
||||
|
||||
from test_tube import HyperOptArgumentParser, Experiment, SlurmCluster
|
||||
from pytorch_lightning.models.trainer import Trainer
|
||||
from pytorch_lightning.utils.arg_parse import add_default_args
|
||||
|
||||
from pytorch_lightning.callbacks import EarlyStopping, ModelCheckpoint
|
||||
|
||||
SEED = 2334
|
||||
torch.manual_seed(SEED)
|
||||
np.random.seed(SEED)
|
||||
|
||||
# ---------------------
|
||||
# DEFINE MODEL HERE
|
||||
# ---------------------
|
||||
from docs.source.examples.example_model import ExampleModel
|
||||
# ---------------------
|
||||
|
||||
AVAILABLE_MODELS = {
|
||||
'model_template': ExampleModel
|
||||
}
|
||||
|
||||
|
||||
"""
|
||||
Allows training by using command line arguments
|
||||
Run by:
|
||||
# TYPE YOUR RUN COMMAND HERE
|
||||
"""
|
||||
|
||||
|
||||
def main_local(hparams):
|
||||
main(hparams, None, None)
|
||||
|
||||
|
||||
def main(hparams, cluster, results_dict):
|
||||
"""
|
||||
Main training routine specific for this project
|
||||
:param hparams:
|
||||
:return:
|
||||
"""
|
||||
on_gpu = hparams.gpus is not None and torch.cuda.is_available()
|
||||
|
||||
device = 'cuda' if on_gpu else 'cpu'
|
||||
hparams.__setattr__('device', device)
|
||||
hparams.__setattr__('on_gpu', on_gpu)
|
||||
hparams.__setattr__('nb_gpus', torch.cuda.device_count())
|
||||
hparams.__setattr__('inference_mode', hparams.model_load_weights_path is not None)
|
||||
|
||||
# delay each training start to not overwrite logs
|
||||
process_position, current_gpu = TRAINING_MODEL.get_process_position(hparams.gpus)
|
||||
sleep(process_position + 1)
|
||||
|
||||
# init experiment
|
||||
log_dir = os.path.dirname(os.path.realpath(__file__))
|
||||
exp = Experiment(
|
||||
name='test_tube_exp',
|
||||
debug=True,
|
||||
save_dir=log_dir,
|
||||
version=0,
|
||||
autosave=False,
|
||||
description='test demo'
|
||||
)
|
||||
|
||||
exp.argparse(hparams)
|
||||
exp.save()
|
||||
|
||||
# build model
|
||||
print('loading model...')
|
||||
model = TRAINING_MODEL(hparams)
|
||||
print('model built')
|
||||
|
||||
# callbacks
|
||||
early_stop = EarlyStopping(
|
||||
monitor=hparams.early_stop_metric,
|
||||
patience=hparams.early_stop_patience,
|
||||
verbose=True,
|
||||
mode=hparams.early_stop_mode
|
||||
)
|
||||
|
||||
model_save_path = '{}/{}/{}'.format(hparams.model_save_path, exp.name, exp.version)
|
||||
checkpoint = ModelCheckpoint(
|
||||
filepath=model_save_path,
|
||||
save_function=None,
|
||||
save_best_only=True,
|
||||
verbose=True,
|
||||
monitor=hparams.model_save_monitor_value,
|
||||
mode=hparams.model_save_monitor_mode
|
||||
)
|
||||
|
||||
# gpus are ; separated for inside a node and , within nodes
|
||||
gpu_list = None
|
||||
if hparams.gpus is not None:
|
||||
gpu_list = [int(x) for x in hparams.gpus.split(';')]
|
||||
|
||||
# configure trainer
|
||||
trainer = Trainer(
|
||||
experiment=exp,
|
||||
cluster=cluster,
|
||||
checkpoint_callback=checkpoint,
|
||||
early_stop_callback=early_stop,
|
||||
gpus=gpu_list
|
||||
)
|
||||
|
||||
# train model
|
||||
trainer.fit(model)
|
||||
|
||||
|
||||
def get_default_parser(strategy, root_dir):
|
||||
|
||||
possible_model_names = list(AVAILABLE_MODELS.keys())
|
||||
parser = HyperOptArgumentParser(strategy=strategy, add_help=False)
|
||||
add_default_args(parser, root_dir, possible_model_names=possible_model_names, rand_seed=SEED)
|
||||
return parser
|
||||
|
||||
|
||||
def get_model_name(args):
|
||||
for i, arg in enumerate(args):
|
||||
if 'model_name' in arg:
|
||||
return args[i+1]
|
||||
|
||||
|
||||
def optimize_on_cluster(hyperparams):
|
||||
# enable cluster training
|
||||
cluster = SlurmCluster(
|
||||
hyperparam_optimizer=hyperparams,
|
||||
log_path=hyperparams.tt_save_path,
|
||||
test_tube_exp_name=hyperparams.tt_name
|
||||
)
|
||||
|
||||
# email for cluster coms
|
||||
cluster.notify_job_status(email='add_email_here', on_done=True, on_fail=True)
|
||||
|
||||
# configure cluster
|
||||
cluster.per_experiment_nb_gpus = hyperparams.per_experiment_nb_gpus
|
||||
cluster.job_time = '48:00:00'
|
||||
cluster.gpu_type = '1080ti'
|
||||
cluster.memory_mb_per_node = 48000
|
||||
|
||||
# any modules for code to run in env
|
||||
cluster.add_command('source activate pytorch_lightning')
|
||||
|
||||
# name of exp
|
||||
job_display_name = hyperparams.tt_name.split('_')[0]
|
||||
job_display_name = job_display_name[0:3]
|
||||
|
||||
# run hopt
|
||||
print('submitting jobs...')
|
||||
cluster.optimize_parallel_cluster_gpu(
|
||||
main,
|
||||
nb_trials=hyperparams.nb_hopt_trials,
|
||||
job_name=job_display_name
|
||||
)
|
||||
|
||||
|
||||
if __name__ == '__main__':
|
||||
|
||||
model_name = get_model_name(sys.argv)
|
||||
if model_name is None:
|
||||
model_name = 'model_template'
|
||||
|
||||
# use default args
|
||||
root_dir = os.path.dirname(os.path.realpath(__file__))
|
||||
parent_parser = get_default_parser(strategy='random_search', root_dir=root_dir)
|
||||
|
||||
# allow model to overwrite or extend args
|
||||
TRAINING_MODEL = AVAILABLE_MODELS[model_name]
|
||||
parser = TRAINING_MODEL.add_model_specific_args(parent_parser, root_dir)
|
||||
hyperparams = parser.parse_args()
|
||||
|
||||
# format GPU layout
|
||||
os.environ["CUDA_DEVICE_ORDER"] = "PCI_BUS_ID"
|
||||
|
||||
# ---------------------
|
||||
# RUN TRAINING
|
||||
# ---------------------
|
||||
|
||||
# cluster and CPU
|
||||
if hyperparams.on_cluster:
|
||||
# run on HPC cluster
|
||||
print('RUNNING ON SLURM CLUSTER')
|
||||
gpu_ids = hyperparams.gpus.split(';')
|
||||
os.environ["CUDA_VISIBLE_DEVICES"] = ','.join(gpu_ids)
|
||||
optimize_on_cluster(hyperparams)
|
||||
|
||||
elif hyperparams.gpus is None:
|
||||
# run on cpu
|
||||
print('RUNNING ON CPU')
|
||||
main(hyperparams, None, None)
|
||||
|
||||
# single or multiple GPUs on same machine
|
||||
gpu_ids = hyperparams.gpus.split(';')
|
||||
if hyperparams.interactive:
|
||||
# run on 1 gpu
|
||||
print(f'RUNNING INTERACTIVE MODE ON GPUS. gpu ids: {gpu_ids}')
|
||||
os.environ["CUDA_VISIBLE_DEVICES"] = ','.join(gpu_ids)
|
||||
main(hyperparams, None, None)
|
||||
|
||||
else:
|
||||
# multiple GPUs on same machine
|
||||
print(f'RUNNING MULTI GPU. GPU ids: {gpu_ids}')
|
||||
hyperparams.optimize_parallel_gpu(
|
||||
main_local,
|
||||
gpu_ids=gpu_ids,
|
||||
nb_trials=hyperparams.nb_hopt_trials,
|
||||
nb_workers=len(gpu_ids)
|
||||
)
|
||||
@@ -0,0 +1 @@
|
||||
from .lightning_module_template import LightningTemplateModel
|
||||
@@ -7,6 +7,8 @@ import torch
|
||||
import torch.nn.functional as F
|
||||
from test_tube import HyperOptArgumentParser
|
||||
from torch import optim
|
||||
from torch.utils.data import DataLoader
|
||||
from torch.utils.data.distributed import DistributedSampler
|
||||
|
||||
from pytorch_lightning.root_module.root_module import LightningModule
|
||||
|
||||
@@ -82,9 +84,10 @@ class LightningTemplateModel(LightningModule):
|
||||
loss_val = self.loss(y, y_hat)
|
||||
|
||||
output = OrderedDict({
|
||||
'loss': loss_val,
|
||||
'tqdm_metrics': {}
|
||||
'loss': loss_val
|
||||
})
|
||||
|
||||
# can also return just a scalar instead of a dict (return loss_val)
|
||||
return output
|
||||
|
||||
def validation_step(self, data_batch, batch_i):
|
||||
@@ -105,8 +108,10 @@ class LightningTemplateModel(LightningModule):
|
||||
|
||||
output = OrderedDict({
|
||||
'val_loss': loss_val,
|
||||
'val_acc': torch.tensor(val_acc),
|
||||
'val_acc': torch.tensor(val_acc).cuda(loss_val.device.index),
|
||||
})
|
||||
|
||||
# can also return just a scalar instead of a dict (return loss_val)
|
||||
return output
|
||||
|
||||
def validation_end(self, outputs):
|
||||
@@ -115,6 +120,10 @@ class LightningTemplateModel(LightningModule):
|
||||
:param outputs: list of individual outputs of each validation step
|
||||
:return:
|
||||
"""
|
||||
# if returned a scalar from validation_step, outputs is a list of tensor scalars
|
||||
# we return just the average in this case (if we want)
|
||||
# return torch.stack(outputs).mean()
|
||||
|
||||
val_loss_mean = 0
|
||||
val_acc_mean = 0
|
||||
for output in outputs:
|
||||
@@ -154,13 +163,25 @@ class LightningTemplateModel(LightningModule):
|
||||
def __dataloader(self, train):
|
||||
# init data generators
|
||||
transform = transforms.Compose([transforms.ToTensor(), transforms.Normalize((0.5,), (1.0,))])
|
||||
|
||||
dataset = MNIST(root=self.hparams.data_root, train=train, transform=transform, download=True)
|
||||
|
||||
loader = torch.utils.data.DataLoader(
|
||||
# when using multi-node we need to add the datasampler
|
||||
train_sampler = None
|
||||
batch_size = self.hparams.batch_size
|
||||
|
||||
try:
|
||||
if self.on_gpu:
|
||||
train_sampler = DistributedSampler(dataset, rank=self.trainer.proc_rank)
|
||||
batch_size = batch_size // self.trainer.world_size # scale batch size
|
||||
except Exception as e:
|
||||
pass
|
||||
|
||||
should_shuffle = train_sampler is None
|
||||
loader = DataLoader(
|
||||
dataset=dataset,
|
||||
batch_size=self.hparams.batch_size,
|
||||
shuffle=True
|
||||
batch_size=batch_size,
|
||||
shuffle=should_shuffle,
|
||||
sampler=train_sampler
|
||||
)
|
||||
|
||||
return loader
|
||||
@@ -210,16 +231,19 @@ class LightningTemplateModel(LightningModule):
|
||||
|
||||
# network params
|
||||
parser.opt_list('--drop_prob', default=0.2, options=[0.2, 0.5], type=float, tunable=False)
|
||||
parser.add_argument('--in_features', default=28*28)
|
||||
parser.add_argument('--out_features', default=10)
|
||||
parser.add_argument('--hidden_dim', default=50000) # use 500 for CPU, 50000 for GPU to see speed difference
|
||||
parser.add_argument('--in_features', default=28*28, type=int)
|
||||
parser.add_argument('--out_features', default=10, type=int)
|
||||
parser.add_argument('--hidden_dim', default=50000, type=int) # use 500 for CPU, 50000 for GPU to see speed difference
|
||||
|
||||
# data
|
||||
parser.add_argument('--data_root', default=os.path.join(root_dir, 'mnist'), type=str)
|
||||
|
||||
# training params (opt)
|
||||
parser.opt_list('--learning_rate', default=0.001, type=float, options=[0.0001, 0.0005, 0.001, 0.005],
|
||||
parser.opt_list('--learning_rate', default=0.001*8, type=float, options=[0.0001, 0.0005, 0.001, 0.005],
|
||||
tunable=False)
|
||||
parser.opt_list('--batch_size', default=256, type=int, options=[32, 64, 128, 256], tunable=False)
|
||||
parser.opt_list('--optimizer_name', default='adam', type=str, options=['adam'], tunable=False)
|
||||
|
||||
# if using 2 nodes with 4 gpus each the batch size here (256) will be 256 / (2*8) = 16 per gpu
|
||||
parser.opt_list('--batch_size', default=256*8, type=int, options=[32, 64, 128, 256], tunable=False,
|
||||
help='batch size will be divided over all the gpus being used across all nodes')
|
||||
return parser
|
||||
|
||||
@@ -0,0 +1,172 @@
|
||||
import os
|
||||
import sys
|
||||
import numpy as np
|
||||
from time import sleep
|
||||
import torch
|
||||
|
||||
from test_tube import HyperOptArgumentParser, Experiment, SlurmCluster
|
||||
from pytorch_lightning.models.trainer import Trainer
|
||||
from pytorch_lightning.utils.arg_parse import add_default_args
|
||||
|
||||
from pytorch_lightning.callbacks import EarlyStopping, ModelCheckpoint
|
||||
|
||||
SEED = 2334
|
||||
torch.manual_seed(SEED)
|
||||
np.random.seed(SEED)
|
||||
|
||||
# ---------------------
|
||||
# DEFINE MODEL HERE
|
||||
# ---------------------
|
||||
from lightning_module_template import LightningTemplateModel
|
||||
# ---------------------
|
||||
|
||||
"""
|
||||
Allows training by using command line arguments
|
||||
Run by:
|
||||
# TYPE YOUR RUN COMMAND HERE
|
||||
"""
|
||||
|
||||
|
||||
def main_local(hparams):
|
||||
main(hparams, None, None)
|
||||
|
||||
|
||||
def main(hparams, cluster, results_dict):
|
||||
"""
|
||||
Main training routine specific for this project
|
||||
:param hparams:
|
||||
:return:
|
||||
"""
|
||||
# ------------------------
|
||||
# 1 INIT LIGHTNING MODEL
|
||||
# ------------------------
|
||||
print('loading model...')
|
||||
model = LightningTemplateModel(hparams)
|
||||
print('model built')
|
||||
|
||||
# ------------------------
|
||||
# 2 INIT TEST TUBE EXP
|
||||
# ------------------------
|
||||
# when using grid search, it's possible for all models to start at once
|
||||
# and use the same test tube experiment version
|
||||
relative_node_id = int(os.environ['SLURM_NODEID'])
|
||||
sleep(relative_node_id + 1)
|
||||
|
||||
# init experiment
|
||||
exp = Experiment(
|
||||
name=hyperparams.experiment_name,
|
||||
save_dir=hyperparams.test_tube_save_path,
|
||||
autosave=False,
|
||||
description='test demo'
|
||||
)
|
||||
|
||||
exp.argparse(hparams)
|
||||
exp.save()
|
||||
|
||||
# ------------------------
|
||||
# 3 DEFINE CALLBACKS
|
||||
# ------------------------
|
||||
model_save_path = '{}/{}/{}'.format(hparams.model_save_path, exp.name, exp.version)
|
||||
early_stop = EarlyStopping(
|
||||
monitor='val_acc',
|
||||
patience=3,
|
||||
verbose=True,
|
||||
mode='max'
|
||||
)
|
||||
|
||||
checkpoint = ModelCheckpoint(
|
||||
filepath=model_save_path,
|
||||
save_best_only=True,
|
||||
verbose=True,
|
||||
monitor='val_loss',
|
||||
mode='min'
|
||||
)
|
||||
|
||||
# ------------------------
|
||||
# 4 INIT TRAINER
|
||||
# ------------------------
|
||||
trainer = Trainer(
|
||||
experiment=exp,
|
||||
cluster=cluster,
|
||||
checkpoint_callback=checkpoint,
|
||||
early_stop_callback=early_stop,
|
||||
gpus=hparams.gpus,
|
||||
nb_gpu_nodes=hyperparams.nb_gpu_nodes
|
||||
)
|
||||
|
||||
# ------------------------
|
||||
# 5 START TRAINING
|
||||
# ------------------------
|
||||
trainer.fit(model)
|
||||
|
||||
|
||||
def optimize_on_cluster(hyperparams):
|
||||
# enable cluster training
|
||||
# log all scripts to the test tube folder
|
||||
cluster = SlurmCluster(
|
||||
hyperparam_optimizer=hyperparams,
|
||||
log_path=hyperparams.slurm_log_path,
|
||||
)
|
||||
|
||||
# email for cluster coms
|
||||
cluster.notify_job_status(email='add_email_here', on_done=True, on_fail=True)
|
||||
|
||||
# configure cluster
|
||||
cluster.per_experiment_nb_gpus = hyperparams.per_experiment_nb_gpus
|
||||
cluster.per_experiment_nb_nodes = hyperparams.nb_gpu_nodes
|
||||
cluster.job_time = '2:00:00'
|
||||
cluster.gpu_type = 'volta'
|
||||
cluster.memory_mb_per_node = 0
|
||||
|
||||
# any modules for code to run in env
|
||||
cluster.add_command('source activate lightning')
|
||||
|
||||
# run only on 32GB voltas
|
||||
cluster.add_slurm_cmd(cmd='constraint', value='volta32gb', comment='use 32gb gpus')
|
||||
cluster.add_slurm_cmd(cmd='partition', value=hyperparams.gpu_partition, comment='use 32gb gpus')
|
||||
|
||||
# run hopt
|
||||
# creates and submits jobs to slurm
|
||||
cluster.optimize_parallel_cluster_gpu(
|
||||
main,
|
||||
nb_trials=hyperparams.nb_hopt_trials,
|
||||
job_name=hyperparams.experiment_name
|
||||
)
|
||||
|
||||
|
||||
if __name__ == '__main__':
|
||||
|
||||
# use default args
|
||||
root_dir = os.path.dirname(os.path.realpath(__file__))
|
||||
demo_log_dir = os.path.join(root_dir, 'pt_lightning_demo_logs')
|
||||
|
||||
checkpoint_dir = os.path.join(demo_log_dir, 'model_weights')
|
||||
test_tube_dir = os.path.join(demo_log_dir, 'test_tube_data')
|
||||
slurm_out_dir = os.path.join(demo_log_dir, 'slurm_scripts')
|
||||
|
||||
parent_parser = HyperOptArgumentParser(strategy='grid_search', add_help=False)
|
||||
|
||||
# cluster args not defined inside the model
|
||||
parent_parser.add_argument('--gpu_partition', type=str, help='consult your cluster manual')
|
||||
|
||||
# TODO: make 1 param
|
||||
parent_parser.add_argument('--per_experiment_nb_gpus', type=int, help='how many gpus to use in a node')
|
||||
parent_parser.add_argument('--gpus', type=str, default='-1', help='how many gpus to use in the node')
|
||||
|
||||
parent_parser.add_argument('--nb_gpu_nodes', type=int, default=1, help='how many nodes to use in a cluster')
|
||||
parent_parser.add_argument('--test_tube_save_path', type=str, default=test_tube_dir, help='where to save logs')
|
||||
parent_parser.add_argument('--slurm_log_path', type=str, default=slurm_out_dir, help='where to save slurm meta')
|
||||
parent_parser.add_argument('--model_save_path', type=str, default=checkpoint_dir, help='where to save model')
|
||||
parent_parser.add_argument('--experiment_name', type=str, default='pt_lightning_exp_a', help='test tube exp name')
|
||||
parent_parser.add_argument('--nb_hopt_trials', type=int, default=1, help='how many grid search trials to run')
|
||||
|
||||
# allow model to overwrite or extend args
|
||||
parser = LightningTemplateModel.add_model_specific_args(parent_parser, root_dir)
|
||||
hyperparams = parser.parse_args()
|
||||
|
||||
# ---------------------
|
||||
# RUN TRAINING
|
||||
# ---------------------
|
||||
# run on HPC cluster
|
||||
print('RUNNING ON SLURM CLUSTER')
|
||||
optimize_on_cluster(hyperparams)
|
||||
@@ -0,0 +1,110 @@
|
||||
"""
|
||||
Runs a model on a single node across N-gpus.
|
||||
"""
|
||||
import os
|
||||
import sys
|
||||
import numpy as np
|
||||
from time import sleep
|
||||
import torch
|
||||
|
||||
from test_tube import HyperOptArgumentParser, Experiment, SlurmCluster
|
||||
from pytorch_lightning.models.trainer import Trainer
|
||||
from pytorch_lightning.utils.arg_parse import add_default_args
|
||||
|
||||
from pytorch_lightning.callbacks import EarlyStopping, ModelCheckpoint
|
||||
|
||||
SEED = 2334
|
||||
torch.manual_seed(SEED)
|
||||
np.random.seed(SEED)
|
||||
|
||||
from lightning_module_template import LightningTemplateModel
|
||||
|
||||
|
||||
def main(hparams):
|
||||
"""
|
||||
Main training routine specific for this project
|
||||
:param hparams:
|
||||
:return:
|
||||
"""
|
||||
# ------------------------
|
||||
# 1 INIT LIGHTNING MODEL
|
||||
# ------------------------
|
||||
print('loading model...')
|
||||
model = LightningTemplateModel(hparams)
|
||||
print('model built')
|
||||
|
||||
# ------------------------
|
||||
# 2 INIT TEST TUBE EXP
|
||||
# ------------------------
|
||||
|
||||
# init experiment
|
||||
exp = Experiment(
|
||||
name=hyperparams.experiment_name,
|
||||
save_dir=hyperparams.test_tube_save_path,
|
||||
autosave=False,
|
||||
description='test demo'
|
||||
)
|
||||
|
||||
exp.argparse(hparams)
|
||||
exp.save()
|
||||
|
||||
# ------------------------
|
||||
# 3 DEFINE CALLBACKS
|
||||
# ------------------------
|
||||
model_save_path = '{}/{}/{}'.format(hparams.model_save_path, exp.name, exp.version)
|
||||
early_stop = EarlyStopping(
|
||||
monitor='val_acc',
|
||||
patience=3,
|
||||
verbose=True,
|
||||
mode='max'
|
||||
)
|
||||
|
||||
checkpoint = ModelCheckpoint(
|
||||
filepath=model_save_path,
|
||||
save_best_only=True,
|
||||
verbose=True,
|
||||
monitor='val_loss',
|
||||
mode='min'
|
||||
)
|
||||
|
||||
# ------------------------
|
||||
# 4 INIT TRAINER
|
||||
# ------------------------
|
||||
trainer = Trainer(
|
||||
experiment=exp,
|
||||
checkpoint_callback=checkpoint,
|
||||
early_stop_callback=early_stop,
|
||||
)
|
||||
|
||||
# ------------------------
|
||||
# 5 START TRAINING
|
||||
# ------------------------
|
||||
trainer.fit(model)
|
||||
|
||||
|
||||
if __name__ == '__main__':
|
||||
|
||||
# dirs
|
||||
root_dir = os.path.dirname(os.path.realpath(__file__))
|
||||
demo_log_dir = os.path.join(root_dir, 'pt_lightning_demo_logs')
|
||||
checkpoint_dir = os.path.join(demo_log_dir, 'model_weights')
|
||||
test_tube_dir = os.path.join(demo_log_dir, 'test_tube_data')
|
||||
|
||||
# although we user hyperOptParser, we are using it only as argparse right now
|
||||
parent_parser = HyperOptArgumentParser(strategy='grid_search', add_help=False)
|
||||
|
||||
# gpu args
|
||||
parent_parser.add_argument('--test_tube_save_path', type=str, default=test_tube_dir, help='where to save logs')
|
||||
parent_parser.add_argument('--model_save_path', type=str, default=checkpoint_dir, help='where to save model')
|
||||
parent_parser.add_argument('--experiment_name', type=str, default='pt_lightning_exp_a', help='test tube exp name')
|
||||
|
||||
# allow model to overwrite or extend args
|
||||
parser = LightningTemplateModel.add_model_specific_args(parent_parser, root_dir)
|
||||
hyperparams = parser.parse_args()
|
||||
|
||||
# ---------------------
|
||||
# RUN TRAINING
|
||||
# ---------------------
|
||||
# run on HPC cluster
|
||||
print(f'RUNNING ON CPU')
|
||||
main(hyperparams)
|
||||
@@ -0,0 +1,113 @@
|
||||
"""
|
||||
Runs a model on a single node across N-gpus.
|
||||
"""
|
||||
import os
|
||||
import sys
|
||||
import numpy as np
|
||||
from time import sleep
|
||||
import torch
|
||||
|
||||
from test_tube import HyperOptArgumentParser, Experiment, SlurmCluster
|
||||
from pytorch_lightning.models.trainer import Trainer
|
||||
from pytorch_lightning.utils.arg_parse import add_default_args
|
||||
|
||||
from pytorch_lightning.callbacks import EarlyStopping, ModelCheckpoint
|
||||
|
||||
SEED = 2334
|
||||
torch.manual_seed(SEED)
|
||||
np.random.seed(SEED)
|
||||
|
||||
from lightning_module_template import LightningTemplateModel
|
||||
|
||||
|
||||
def main(hparams):
|
||||
"""
|
||||
Main training routine specific for this project
|
||||
:param hparams:
|
||||
:return:
|
||||
"""
|
||||
# ------------------------
|
||||
# 1 INIT LIGHTNING MODEL
|
||||
# ------------------------
|
||||
print('loading model...')
|
||||
model = LightningTemplateModel(hparams)
|
||||
print('model built')
|
||||
|
||||
# ------------------------
|
||||
# 2 INIT TEST TUBE EXP
|
||||
# ------------------------
|
||||
|
||||
# init experiment
|
||||
exp = Experiment(
|
||||
name=hyperparams.experiment_name,
|
||||
save_dir=hyperparams.test_tube_save_path,
|
||||
autosave=False,
|
||||
description='test demo'
|
||||
)
|
||||
|
||||
exp.argparse(hparams)
|
||||
exp.save()
|
||||
|
||||
# ------------------------
|
||||
# 3 DEFINE CALLBACKS
|
||||
# ------------------------
|
||||
model_save_path = '{}/{}/{}'.format(hparams.model_save_path, exp.name, exp.version)
|
||||
early_stop = EarlyStopping(
|
||||
monitor='val_acc',
|
||||
patience=3,
|
||||
verbose=True,
|
||||
mode='max'
|
||||
)
|
||||
|
||||
checkpoint = ModelCheckpoint(
|
||||
filepath=model_save_path,
|
||||
save_best_only=True,
|
||||
verbose=True,
|
||||
monitor='val_loss',
|
||||
mode='min'
|
||||
)
|
||||
|
||||
# ------------------------
|
||||
# 4 INIT TRAINER
|
||||
# ------------------------
|
||||
trainer = Trainer(
|
||||
experiment=exp,
|
||||
checkpoint_callback=checkpoint,
|
||||
early_stop_callback=early_stop,
|
||||
gpus=hparams.gpus,
|
||||
use_amp=True
|
||||
)
|
||||
|
||||
# ------------------------
|
||||
# 5 START TRAINING
|
||||
# ------------------------
|
||||
trainer.fit(model)
|
||||
|
||||
|
||||
if __name__ == '__main__':
|
||||
|
||||
# dirs
|
||||
root_dir = os.path.dirname(os.path.realpath(__file__))
|
||||
demo_log_dir = os.path.join(root_dir, 'pt_lightning_demo_logs')
|
||||
checkpoint_dir = os.path.join(demo_log_dir, 'model_weights')
|
||||
test_tube_dir = os.path.join(demo_log_dir, 'test_tube_data')
|
||||
|
||||
# although we user hyperOptParser, we are using it only as argparse right now
|
||||
parent_parser = HyperOptArgumentParser(strategy='grid_search', add_help=False)
|
||||
|
||||
# gpu args
|
||||
parent_parser.add_argument('--gpus', type=str, default='-1', help='how many gpus to use in the node. -1 uses all the gpus on the node')
|
||||
parent_parser.add_argument('--test_tube_save_path', type=str, default=test_tube_dir, help='where to save logs')
|
||||
parent_parser.add_argument('--model_save_path', type=str, default=checkpoint_dir, help='where to save model')
|
||||
parent_parser.add_argument('--experiment_name', type=str, default='pt_lightning_exp_a', help='test tube exp name')
|
||||
|
||||
# allow model to overwrite or extend args
|
||||
parser = LightningTemplateModel.add_model_specific_args(parent_parser, root_dir)
|
||||
hyperparams = parser.parse_args()
|
||||
|
||||
# ---------------------
|
||||
# RUN TRAINING
|
||||
# ---------------------
|
||||
# run on HPC cluster
|
||||
print(f'RUNNING INTERACTIVE MODE ON GPUS. gpu ids: {hyperparams.gpus}')
|
||||
main(hyperparams)
|
||||
@@ -0,0 +1,112 @@
|
||||
"""
|
||||
Runs a model on a single node across N-gpus.
|
||||
"""
|
||||
import os
|
||||
import sys
|
||||
import numpy as np
|
||||
from time import sleep
|
||||
import torch
|
||||
|
||||
from test_tube import HyperOptArgumentParser, Experiment, SlurmCluster
|
||||
from pytorch_lightning.models.trainer import Trainer
|
||||
from pytorch_lightning.utils.arg_parse import add_default_args
|
||||
|
||||
from pytorch_lightning.callbacks import EarlyStopping, ModelCheckpoint
|
||||
|
||||
SEED = 2334
|
||||
torch.manual_seed(SEED)
|
||||
np.random.seed(SEED)
|
||||
|
||||
from lightning_module_template import LightningTemplateModel
|
||||
|
||||
|
||||
def main(hparams):
|
||||
"""
|
||||
Main training routine specific for this project
|
||||
:param hparams:
|
||||
:return:
|
||||
"""
|
||||
# ------------------------
|
||||
# 1 INIT LIGHTNING MODEL
|
||||
# ------------------------
|
||||
print('loading model...')
|
||||
model = LightningTemplateModel(hparams)
|
||||
print('model built')
|
||||
|
||||
# ------------------------
|
||||
# 2 INIT TEST TUBE EXP
|
||||
# ------------------------
|
||||
|
||||
# init experiment
|
||||
exp = Experiment(
|
||||
name=hyperparams.experiment_name,
|
||||
save_dir=hyperparams.test_tube_save_path,
|
||||
autosave=False,
|
||||
description='test demo'
|
||||
)
|
||||
|
||||
exp.argparse(hparams)
|
||||
exp.save()
|
||||
|
||||
# ------------------------
|
||||
# 3 DEFINE CALLBACKS
|
||||
# ------------------------
|
||||
model_save_path = '{}/{}/{}'.format(hparams.model_save_path, exp.name, exp.version)
|
||||
early_stop = EarlyStopping(
|
||||
monitor='val_acc',
|
||||
patience=3,
|
||||
verbose=True,
|
||||
mode='max'
|
||||
)
|
||||
|
||||
checkpoint = ModelCheckpoint(
|
||||
filepath=model_save_path,
|
||||
save_best_only=True,
|
||||
verbose=True,
|
||||
monitor='val_loss',
|
||||
mode='min'
|
||||
)
|
||||
|
||||
# ------------------------
|
||||
# 4 INIT TRAINER
|
||||
# ------------------------
|
||||
trainer = Trainer(
|
||||
experiment=exp,
|
||||
checkpoint_callback=checkpoint,
|
||||
early_stop_callback=early_stop,
|
||||
gpus=hparams.gpus,
|
||||
)
|
||||
|
||||
# ------------------------
|
||||
# 5 START TRAINING
|
||||
# ------------------------
|
||||
trainer.fit(model)
|
||||
|
||||
|
||||
if __name__ == '__main__':
|
||||
|
||||
# dirs
|
||||
root_dir = os.path.dirname(os.path.realpath(__file__))
|
||||
demo_log_dir = os.path.join(root_dir, 'pt_lightning_demo_logs')
|
||||
checkpoint_dir = os.path.join(demo_log_dir, 'model_weights')
|
||||
test_tube_dir = os.path.join(demo_log_dir, 'test_tube_data')
|
||||
|
||||
# although we user hyperOptParser, we are using it only as argparse right now
|
||||
parent_parser = HyperOptArgumentParser(strategy='grid_search', add_help=False)
|
||||
|
||||
# gpu args
|
||||
parent_parser.add_argument('--gpus', type=str, default='-1', help='how many gpus to use in the node. -1 uses all the gpus on the node')
|
||||
parent_parser.add_argument('--test_tube_save_path', type=str, default=test_tube_dir, help='where to save logs')
|
||||
parent_parser.add_argument('--model_save_path', type=str, default=checkpoint_dir, help='where to save model')
|
||||
parent_parser.add_argument('--experiment_name', type=str, default='pt_lightning_exp_a', help='test tube exp name')
|
||||
|
||||
# allow model to overwrite or extend args
|
||||
parser = LightningTemplateModel.add_model_specific_args(parent_parser, root_dir)
|
||||
hyperparams = parser.parse_args()
|
||||
|
||||
# ---------------------
|
||||
# RUN TRAINING
|
||||
# ---------------------
|
||||
# run on HPC cluster
|
||||
print(f'RUNNING INTERACTIVE MODE ON GPUS. gpu ids: {hyperparams.gpus}')
|
||||
main(hyperparams)
|
||||
@@ -0,0 +1,112 @@
|
||||
"""
|
||||
Runs a model on a single node across N-gpus.
|
||||
"""
|
||||
import os
|
||||
import sys
|
||||
import numpy as np
|
||||
from time import sleep
|
||||
import torch
|
||||
|
||||
from test_tube import HyperOptArgumentParser, Experiment, SlurmCluster
|
||||
from pytorch_lightning.models.trainer import Trainer
|
||||
from pytorch_lightning.utils.arg_parse import add_default_args
|
||||
|
||||
from pytorch_lightning.callbacks import EarlyStopping, ModelCheckpoint
|
||||
|
||||
SEED = 2334
|
||||
torch.manual_seed(SEED)
|
||||
np.random.seed(SEED)
|
||||
|
||||
from lightning_module_template import LightningTemplateModel
|
||||
|
||||
|
||||
def main(hparams):
|
||||
"""
|
||||
Main training routine specific for this project
|
||||
:param hparams:
|
||||
:return:
|
||||
"""
|
||||
# ------------------------
|
||||
# 1 INIT LIGHTNING MODEL
|
||||
# ------------------------
|
||||
print('loading model...')
|
||||
model = LightningTemplateModel(hparams)
|
||||
print('model built')
|
||||
|
||||
# ------------------------
|
||||
# 2 INIT TEST TUBE EXP
|
||||
# ------------------------
|
||||
|
||||
# init experiment
|
||||
exp = Experiment(
|
||||
name=hyperparams.experiment_name,
|
||||
save_dir=hyperparams.test_tube_save_path,
|
||||
autosave=False,
|
||||
description='test demo'
|
||||
)
|
||||
|
||||
exp.argparse(hparams)
|
||||
exp.save()
|
||||
|
||||
# ------------------------
|
||||
# 3 DEFINE CALLBACKS
|
||||
# ------------------------
|
||||
model_save_path = '{}/{}/{}'.format(hparams.model_save_path, exp.name, exp.version)
|
||||
early_stop = EarlyStopping(
|
||||
monitor='val_acc',
|
||||
patience=3,
|
||||
verbose=True,
|
||||
mode='max'
|
||||
)
|
||||
|
||||
checkpoint = ModelCheckpoint(
|
||||
filepath=model_save_path,
|
||||
save_best_only=True,
|
||||
verbose=True,
|
||||
monitor='val_loss',
|
||||
mode='min'
|
||||
)
|
||||
|
||||
# ------------------------
|
||||
# 4 INIT TRAINER
|
||||
# ------------------------
|
||||
trainer = Trainer(
|
||||
experiment=exp,
|
||||
checkpoint_callback=checkpoint,
|
||||
early_stop_callback=early_stop,
|
||||
gpus=hparams.gpus,
|
||||
)
|
||||
|
||||
# ------------------------
|
||||
# 5 START TRAINING
|
||||
# ------------------------
|
||||
trainer.fit(model)
|
||||
|
||||
|
||||
if __name__ == '__main__':
|
||||
|
||||
# dirs
|
||||
root_dir = os.path.dirname(os.path.realpath(__file__))
|
||||
demo_log_dir = os.path.join(root_dir, 'pt_lightning_demo_logs')
|
||||
checkpoint_dir = os.path.join(demo_log_dir, 'model_weights')
|
||||
test_tube_dir = os.path.join(demo_log_dir, 'test_tube_data')
|
||||
|
||||
# although we user hyperOptParser, we are using it only as argparse right now
|
||||
parent_parser = HyperOptArgumentParser(strategy='grid_search', add_help=False)
|
||||
|
||||
# gpu args
|
||||
parent_parser.add_argument('--gpus', type=str, default='-1', help='how many gpus to use in the node. -1 uses all the gpus on the node')
|
||||
parent_parser.add_argument('--test_tube_save_path', type=str, default=test_tube_dir, help='where to save logs')
|
||||
parent_parser.add_argument('--model_save_path', type=str, default=checkpoint_dir, help='where to save model')
|
||||
parent_parser.add_argument('--experiment_name', type=str, default='pt_lightning_exp_a', help='test tube exp name')
|
||||
|
||||
# allow model to overwrite or extend args
|
||||
parser = LightningTemplateModel.add_model_specific_args(parent_parser, root_dir)
|
||||
hyperparams = parser.parse_args()
|
||||
|
||||
# ---------------------
|
||||
# RUN TRAINING
|
||||
# ---------------------
|
||||
# run on HPC cluster
|
||||
print(f'RUNNING INTERACTIVE MODE ON GPUS. gpu ids: {hyperparams.gpus}')
|
||||
main(hyperparams)
|
||||
@@ -0,0 +1,112 @@
|
||||
"""
|
||||
Runs a model on a single node across N-gpus.
|
||||
"""
|
||||
import os
|
||||
import sys
|
||||
import numpy as np
|
||||
from time import sleep
|
||||
import torch
|
||||
|
||||
from test_tube import HyperOptArgumentParser, Experiment, SlurmCluster
|
||||
from pytorch_lightning.models.trainer import Trainer
|
||||
from pytorch_lightning.utils.arg_parse import add_default_args
|
||||
|
||||
from pytorch_lightning.callbacks import EarlyStopping, ModelCheckpoint
|
||||
|
||||
SEED = 2334
|
||||
torch.manual_seed(SEED)
|
||||
np.random.seed(SEED)
|
||||
|
||||
from lightning_module_template import LightningTemplateModel
|
||||
|
||||
|
||||
def main(hparams):
|
||||
"""
|
||||
Main training routine specific for this project
|
||||
:param hparams:
|
||||
:return:
|
||||
"""
|
||||
# ------------------------
|
||||
# 1 INIT LIGHTNING MODEL
|
||||
# ------------------------
|
||||
print('loading model...')
|
||||
model = LightningTemplateModel(hparams)
|
||||
print('model built')
|
||||
|
||||
# ------------------------
|
||||
# 2 INIT TEST TUBE EXP
|
||||
# ------------------------
|
||||
|
||||
# init experiment
|
||||
exp = Experiment(
|
||||
name=hyperparams.experiment_name,
|
||||
save_dir=hyperparams.test_tube_save_path,
|
||||
autosave=False,
|
||||
description='test demo'
|
||||
)
|
||||
|
||||
exp.argparse(hparams)
|
||||
exp.save()
|
||||
|
||||
# ------------------------
|
||||
# 3 DEFINE CALLBACKS
|
||||
# ------------------------
|
||||
model_save_path = '{}/{}/{}'.format(hparams.model_save_path, exp.name, exp.version)
|
||||
early_stop = EarlyStopping(
|
||||
monitor='val_acc',
|
||||
patience=3,
|
||||
verbose=True,
|
||||
mode='max'
|
||||
)
|
||||
|
||||
checkpoint = ModelCheckpoint(
|
||||
filepath=model_save_path,
|
||||
save_best_only=True,
|
||||
verbose=True,
|
||||
monitor='val_loss',
|
||||
mode='min'
|
||||
)
|
||||
|
||||
# ------------------------
|
||||
# 4 INIT TRAINER
|
||||
# ------------------------
|
||||
trainer = Trainer(
|
||||
experiment=exp,
|
||||
checkpoint_callback=checkpoint,
|
||||
early_stop_callback=early_stop,
|
||||
gpus=hparams.gpus,
|
||||
)
|
||||
|
||||
# ------------------------
|
||||
# 5 START TRAINING
|
||||
# ------------------------
|
||||
trainer.fit(model)
|
||||
|
||||
|
||||
if __name__ == '__main__':
|
||||
|
||||
# dirs
|
||||
root_dir = os.path.dirname(os.path.realpath(__file__))
|
||||
demo_log_dir = os.path.join(root_dir, 'pt_lightning_demo_logs')
|
||||
checkpoint_dir = os.path.join(demo_log_dir, 'model_weights')
|
||||
test_tube_dir = os.path.join(demo_log_dir, 'test_tube_data')
|
||||
|
||||
# although we user hyperOptParser, we are using it only as argparse right now
|
||||
parent_parser = HyperOptArgumentParser(strategy='grid_search', add_help=False)
|
||||
|
||||
# gpu args
|
||||
parent_parser.add_argument('--gpus', type=str, default='0', help='how many gpus to use in the node. -1 uses all the gpus on the node')
|
||||
parent_parser.add_argument('--test_tube_save_path', type=str, default=test_tube_dir, help='where to save logs')
|
||||
parent_parser.add_argument('--model_save_path', type=str, default=checkpoint_dir, help='where to save model')
|
||||
parent_parser.add_argument('--experiment_name', type=str, default='pt_lightning_exp_a', help='test tube exp name')
|
||||
|
||||
# allow model to overwrite or extend args
|
||||
parser = LightningTemplateModel.add_model_specific_args(parent_parser, root_dir)
|
||||
hyperparams = parser.parse_args()
|
||||
|
||||
# ---------------------
|
||||
# RUN TRAINING
|
||||
# ---------------------
|
||||
# run on HPC cluster
|
||||
print(f'RUNNING INTERACTIVE MODE ON GPUS. gpu ids: {hyperparams.gpus}')
|
||||
main(hyperparams)
|
||||
@@ -41,7 +41,6 @@ def main(hparams):
|
||||
model_save_path = '{}/{}/{}'.format(hparams.model_save_path, exp.name, exp.version)
|
||||
checkpoint = ModelCheckpoint(
|
||||
filepath=model_save_path,
|
||||
save_function=None,
|
||||
save_best_only=True,
|
||||
verbose=True,
|
||||
monitor='val_acc',
|
||||
|
||||
@@ -1,210 +0,0 @@
|
||||
import os
|
||||
import sys
|
||||
import numpy as np
|
||||
from time import sleep
|
||||
import torch
|
||||
|
||||
from test_tube import HyperOptArgumentParser, Experiment, SlurmCluster
|
||||
from pytorch_lightning.models.trainer import Trainer
|
||||
from pytorch_lightning.utils.arg_parse import add_default_args
|
||||
|
||||
from pytorch_lightning.callbacks import EarlyStopping, ModelCheckpoint
|
||||
|
||||
SEED = 2334
|
||||
torch.manual_seed(SEED)
|
||||
np.random.seed(SEED)
|
||||
|
||||
# ---------------------
|
||||
# DEFINE MODEL HERE
|
||||
# ---------------------
|
||||
from examples.new_project_templates.lightning_module_template import LightningTemplateModel
|
||||
# ---------------------
|
||||
|
||||
AVAILABLE_MODELS = {
|
||||
'model_template': LightningTemplateModel
|
||||
}
|
||||
|
||||
|
||||
"""
|
||||
Allows training by using command line arguments
|
||||
Run by:
|
||||
# TYPE YOUR RUN COMMAND HERE
|
||||
"""
|
||||
|
||||
|
||||
def main_local(hparams):
|
||||
main(hparams, None, None)
|
||||
|
||||
|
||||
def main(hparams, cluster, results_dict):
|
||||
"""
|
||||
Main training routine specific for this project
|
||||
:param hparams:
|
||||
:return:
|
||||
"""
|
||||
on_gpu = hparams.gpus is not None and torch.cuda.is_available()
|
||||
|
||||
device = 'cuda' if on_gpu else 'cpu'
|
||||
hparams.__setattr__('device', device)
|
||||
hparams.__setattr__('on_gpu', on_gpu)
|
||||
hparams.__setattr__('nb_gpus', torch.cuda.device_count())
|
||||
hparams.__setattr__('inference_mode', hparams.model_load_weights_path is not None)
|
||||
|
||||
# delay each training start to not overwrite logs
|
||||
process_position, current_gpu = TRAINING_MODEL.get_process_position(hparams.gpus)
|
||||
sleep(process_position + 1)
|
||||
|
||||
# init experiment
|
||||
log_dir = os.path.dirname(os.path.realpath(__file__))
|
||||
exp = Experiment(
|
||||
name='test_tube_exp',
|
||||
debug=True,
|
||||
save_dir=log_dir,
|
||||
version=0,
|
||||
autosave=False,
|
||||
description='test demo'
|
||||
)
|
||||
|
||||
exp.argparse(hparams)
|
||||
exp.save()
|
||||
|
||||
# build model
|
||||
print('loading model...')
|
||||
model = TRAINING_MODEL(hparams)
|
||||
print('model built')
|
||||
|
||||
# callbacks
|
||||
early_stop = EarlyStopping(
|
||||
monitor=hparams.early_stop_metric,
|
||||
patience=hparams.early_stop_patience,
|
||||
verbose=True,
|
||||
mode=hparams.early_stop_mode
|
||||
)
|
||||
|
||||
model_save_path = '{}/{}/{}'.format(hparams.model_save_path, exp.name, exp.version)
|
||||
checkpoint = ModelCheckpoint(
|
||||
filepath=model_save_path,
|
||||
save_function=None,
|
||||
save_best_only=True,
|
||||
verbose=True,
|
||||
monitor=hparams.model_save_monitor_value,
|
||||
mode=hparams.model_save_monitor_mode
|
||||
)
|
||||
|
||||
# gpus are ; separated for inside a node and , within nodes
|
||||
gpu_list = None
|
||||
if hparams.gpus is not None:
|
||||
gpu_list = [int(x) for x in hparams.gpus.split(';')]
|
||||
|
||||
# configure trainer
|
||||
trainer = Trainer(
|
||||
experiment=exp,
|
||||
cluster=cluster,
|
||||
checkpoint_callback=checkpoint,
|
||||
early_stop_callback=early_stop,
|
||||
gpus=gpu_list
|
||||
)
|
||||
|
||||
# train model
|
||||
trainer.fit(model)
|
||||
|
||||
|
||||
def get_default_parser(strategy, root_dir):
|
||||
|
||||
possible_model_names = list(AVAILABLE_MODELS.keys())
|
||||
parser = HyperOptArgumentParser(strategy=strategy, add_help=False)
|
||||
add_default_args(parser, root_dir, possible_model_names=possible_model_names, rand_seed=SEED)
|
||||
return parser
|
||||
|
||||
|
||||
def get_model_name(args):
|
||||
for i, arg in enumerate(args):
|
||||
if 'model_name' in arg:
|
||||
return args[i+1]
|
||||
|
||||
|
||||
def optimize_on_cluster(hyperparams):
|
||||
# enable cluster training
|
||||
cluster = SlurmCluster(
|
||||
hyperparam_optimizer=hyperparams,
|
||||
log_path=hyperparams.tt_save_path,
|
||||
test_tube_exp_name=hyperparams.tt_name
|
||||
)
|
||||
|
||||
# email for cluster coms
|
||||
cluster.notify_job_status(email='add_email_here', on_done=True, on_fail=True)
|
||||
|
||||
# configure cluster
|
||||
cluster.per_experiment_nb_gpus = hyperparams.per_experiment_nb_gpus
|
||||
cluster.job_time = '48:00:00'
|
||||
cluster.gpu_type = '1080ti'
|
||||
cluster.memory_mb_per_node = 48000
|
||||
|
||||
# any modules for code to run in env
|
||||
cluster.add_command('source activate pytorch_lightning')
|
||||
|
||||
# name of exp
|
||||
job_display_name = hyperparams.tt_name.split('_')[0]
|
||||
job_display_name = job_display_name[0:3]
|
||||
|
||||
# run hopt
|
||||
print('submitting jobs...')
|
||||
cluster.optimize_parallel_cluster_gpu(
|
||||
main,
|
||||
nb_trials=hyperparams.nb_hopt_trials,
|
||||
job_name=job_display_name
|
||||
)
|
||||
|
||||
|
||||
if __name__ == '__main__':
|
||||
|
||||
model_name = get_model_name(sys.argv)
|
||||
if model_name is None:
|
||||
model_name = 'model_template'
|
||||
|
||||
# use default args
|
||||
root_dir = os.path.dirname(os.path.realpath(__file__))
|
||||
parent_parser = get_default_parser(strategy='random_search', root_dir=root_dir)
|
||||
|
||||
# allow model to overwrite or extend args
|
||||
TRAINING_MODEL = AVAILABLE_MODELS[model_name]
|
||||
parser = TRAINING_MODEL.add_model_specific_args(parent_parser, root_dir)
|
||||
hyperparams = parser.parse_args()
|
||||
|
||||
# format GPU layout
|
||||
os.environ["CUDA_DEVICE_ORDER"] = "PCI_BUS_ID"
|
||||
|
||||
# ---------------------
|
||||
# RUN TRAINING
|
||||
# ---------------------
|
||||
|
||||
# cluster and CPU
|
||||
if hyperparams.on_cluster:
|
||||
# run on HPC cluster
|
||||
print('RUNNING ON SLURM CLUSTER')
|
||||
gpu_ids = hyperparams.gpus.split(';')
|
||||
os.environ["CUDA_VISIBLE_DEVICES"] = ','.join(gpu_ids)
|
||||
optimize_on_cluster(hyperparams)
|
||||
|
||||
elif hyperparams.gpus is None:
|
||||
# run on cpu
|
||||
print('RUNNING ON CPU')
|
||||
main(hyperparams, None, None)
|
||||
|
||||
# single or multiple GPUs on same machine
|
||||
gpu_ids = hyperparams.gpus.split(';')
|
||||
if hyperparams.interactive:
|
||||
# run on 1 gpu
|
||||
print(f'RUNNING INTERACTIVE MODE ON GPUS. gpu ids: {gpu_ids}')
|
||||
os.environ["CUDA_VISIBLE_DEVICES"] = ','.join(gpu_ids)
|
||||
main(hyperparams, None, None)
|
||||
|
||||
else:
|
||||
# multiple GPUs on same machine
|
||||
print(f'RUNNING MULTI GPU. GPU ids: {gpu_ids}')
|
||||
hyperparams.optimize_parallel_gpu(
|
||||
main_local,
|
||||
gpu_ids=gpu_ids,
|
||||
nb_trials=hyperparams.nb_hopt_trials,
|
||||
nb_workers=len(gpu_ids)
|
||||
)
|
||||
+3
-2
@@ -1,9 +1,10 @@
|
||||
site_name: Pytorch lightning Documentation
|
||||
theme: readthedocs
|
||||
theme:
|
||||
name: 'material'
|
||||
docs_dir: docs
|
||||
repo_url: https://github.com/williamFalcon/pytorch-lightning
|
||||
site_dir: 'site'
|
||||
site_description: 'Documentation for Pytorch Pytorch-Lightning, the researcher version of keras.'
|
||||
site_description: 'Documentation for Pytorch LightningModule, the researcher version of keras.'
|
||||
|
||||
dev_addr: '0.0.0.0:8000'
|
||||
#google_analytics: ['UA-aasd', 'sitename']
|
||||
|
||||
@@ -1 +1,2 @@
|
||||
from .models import Trainer
|
||||
from .models import Trainer
|
||||
from .root_module.root_module import LightningModule
|
||||
@@ -1,6 +1,6 @@
|
||||
import numpy as np
|
||||
import os, shutil
|
||||
from pytorch_lightning.pt_overrides.override_data_parallel import LightningDataParallel
|
||||
from pytorch_lightning.pt_overrides.override_data_parallel import LightningDistributedDataParallel
|
||||
|
||||
|
||||
class Callback(object):
|
||||
@@ -34,7 +34,7 @@ class Callback(object):
|
||||
self.params = params
|
||||
|
||||
def set_model(self, model):
|
||||
if type(model) is LightningDataParallel:
|
||||
if type(model) is LightningDistributedDataParallel:
|
||||
model = model.module
|
||||
self.model = model
|
||||
|
||||
@@ -170,12 +170,11 @@ class ModelCheckpoint(Callback):
|
||||
period: Interval (number of epochs) between checkpoints.
|
||||
"""
|
||||
|
||||
def __init__(self, filepath, save_function, monitor='val_loss', verbose=0,
|
||||
def __init__(self, filepath, monitor='val_loss', verbose=0,
|
||||
save_best_only=False, save_weights_only=False,
|
||||
mode='auto', period=1, prefix=''):
|
||||
super(ModelCheckpoint, self).__init__()
|
||||
self.monitor = monitor
|
||||
self.save_function = save_function
|
||||
self.verbose = verbose
|
||||
self.filepath = filepath
|
||||
self.save_best_only = save_best_only
|
||||
|
||||
@@ -1,12 +1,25 @@
|
||||
import torch
|
||||
import tqdm
|
||||
import numpy as np
|
||||
from pytorch_lightning.root_module.memory import get_gpu_memory_map
|
||||
"""
|
||||
The trainer handles all the logic for running a val loop, training loop, distributing, etc...
|
||||
"""
|
||||
import subprocess
|
||||
import traceback
|
||||
from pytorch_lightning.root_module.model_saving import TrainerIO
|
||||
from torch.optim.lr_scheduler import MultiStepLR
|
||||
from pytorch_lightning.pt_overrides.override_data_parallel import LightningDataParallel
|
||||
import warnings
|
||||
import os
|
||||
import pdb
|
||||
import re
|
||||
|
||||
import torch
|
||||
from torch.utils.data.distributed import DistributedSampler
|
||||
from torch.optim.lr_scheduler import MultiStepLR
|
||||
import torch.multiprocessing as mp
|
||||
import torch.distributed as dist
|
||||
import numpy as np
|
||||
import tqdm
|
||||
|
||||
from pytorch_lightning.root_module.memory import get_gpu_memory_map
|
||||
from pytorch_lightning.root_module.model_saving import TrainerIO
|
||||
from pytorch_lightning.pt_overrides.override_data_parallel import LightningDistributedDataParallel, LightningDataParallel
|
||||
|
||||
|
||||
try:
|
||||
from apex import amp
|
||||
@@ -16,6 +29,14 @@ except ModuleNotFoundError:
|
||||
|
||||
|
||||
def reduce_distributed_output(output, nb_gpus):
|
||||
if nb_gpus <= 1:
|
||||
return output
|
||||
|
||||
# when using DP, we get one output per gpu
|
||||
# average outputs and return
|
||||
if type(output) is torch.Tensor:
|
||||
return output.mean()
|
||||
|
||||
for k, v in output.items():
|
||||
# recurse on nested dics
|
||||
if isinstance(output[k], dict):
|
||||
@@ -32,10 +53,13 @@ class Trainer(TrainerIO):
|
||||
|
||||
def __init__(self,
|
||||
experiment,
|
||||
checkpoint_callback, early_stop_callback,
|
||||
early_stop_callback=None,
|
||||
checkpoint_callback=None,
|
||||
gradient_clip=0,
|
||||
cluster=None,
|
||||
process_position=0,
|
||||
current_gpu_name=0,
|
||||
nb_gpu_nodes=1,
|
||||
gpus=None,
|
||||
progress_bar=True,
|
||||
overfit_pct=0.0,
|
||||
@@ -43,18 +67,57 @@ class Trainer(TrainerIO):
|
||||
check_val_every_n_epoch=1,
|
||||
fast_dev_run=False,
|
||||
accumulate_grad_batches=1,
|
||||
enable_early_stop=True, max_nb_epochs=1000, min_nb_epochs=1,
|
||||
train_percent_check=1.0, val_percent_check=1.0, test_percent_check=1.0, val_check_interval=0.95,
|
||||
max_nb_epochs=1000, min_nb_epochs=1,
|
||||
train_percent_check=1.0, val_percent_check=1.0, test_percent_check=1.0,
|
||||
val_check_interval=0.95,
|
||||
log_save_interval=100, add_log_row_interval=10,
|
||||
lr_scheduler_milestones=None,
|
||||
distributed_backend='dp',
|
||||
use_amp=False,
|
||||
print_nan_grads=False,
|
||||
print_weights_summary=True,
|
||||
amp_level='O2',
|
||||
nb_sanity_val_steps=5):
|
||||
|
||||
"""
|
||||
|
||||
:param experiment: Test-tube experiment
|
||||
:param early_stop_callback: from pytorch_lightning import EarlyStopping
|
||||
:param checkpoint_callback: from pytorch_lightning import Checkpoint
|
||||
:param gradient_clip:
|
||||
:param cluster:
|
||||
:param process_position:
|
||||
:param current_gpu_name:
|
||||
:param nb_gpu_nodes:
|
||||
:param gpus:
|
||||
:param progress_bar:
|
||||
:param overfit_pct:
|
||||
:param track_grad_norm:
|
||||
:param check_val_every_n_epoch:
|
||||
:param fast_dev_run:
|
||||
:param accumulate_grad_batches:
|
||||
:param max_nb_epochs:
|
||||
:param min_nb_epochs:
|
||||
:param train_percent_check:
|
||||
:param val_percent_check:
|
||||
:param test_percent_check:
|
||||
:param val_check_interval:
|
||||
:param log_save_interval:
|
||||
:param add_log_row_interval:
|
||||
:param lr_scheduler_milestones:
|
||||
:param distributed_backend: 'np' to use DistributedParallel, 'ddp' to use DistributedDataParallel
|
||||
:param use_amp:
|
||||
:param print_nan_grads:
|
||||
:param print_weights_summary:
|
||||
:param amp_level:
|
||||
:param nb_sanity_val_steps:
|
||||
"""
|
||||
|
||||
# Transfer params
|
||||
self.nb_gpu_nodes = nb_gpu_nodes
|
||||
self.gradient_clip = gradient_clip
|
||||
self.check_val_every_n_epoch = check_val_every_n_epoch
|
||||
self.enable_early_stop = enable_early_stop
|
||||
self.enable_early_stop = early_stop_callback is not None
|
||||
self.track_grad_norm = track_grad_norm
|
||||
self.fast_dev_run = fast_dev_run
|
||||
self.on_gpu = gpus is not None and torch.cuda.is_available()
|
||||
@@ -64,8 +127,12 @@ class Trainer(TrainerIO):
|
||||
self.cluster = cluster
|
||||
self.process_position = process_position
|
||||
self.current_gpu_name = current_gpu_name
|
||||
self.print_weights_summary = print_weights_summary
|
||||
self.checkpoint_callback = checkpoint_callback
|
||||
self.checkpoint_callback.save_function = self.save_checkpoint
|
||||
|
||||
if self.checkpoint_callback is not None:
|
||||
self.checkpoint_callback.save_function = self.save_checkpoint
|
||||
|
||||
self.early_stop = early_stop_callback
|
||||
self.model = None
|
||||
self.max_nb_epochs = max_nb_epochs
|
||||
@@ -77,8 +144,50 @@ class Trainer(TrainerIO):
|
||||
self.lr_schedulers = []
|
||||
self.amp_level = amp_level
|
||||
self.print_nan_grads = print_nan_grads
|
||||
self.data_parallel_device_ids = gpus
|
||||
self.data_parallel = gpus is not None and len(gpus) > 0
|
||||
self.data_parallel_device_ids = None
|
||||
self.world_size = 1
|
||||
self.node_rank = 0
|
||||
self.use_ddp = False
|
||||
self.use_dp = False
|
||||
|
||||
|
||||
# gpus come in as a string.
|
||||
# if gpus = -1 then use all available devices
|
||||
# otherwise, split the string using commas
|
||||
if gpus is not None:
|
||||
if type(gpus) is list:
|
||||
self.data_parallel_device_ids = gpus
|
||||
elif type(gpus) is str:
|
||||
if gpus == '-1':
|
||||
self.data_parallel_device_ids = list(range(0, torch.cuda.device_count()))
|
||||
else:
|
||||
self.data_parallel_device_ids = [int(x.strip()) for x in gpus.split(',')]
|
||||
else:
|
||||
raise Exception('gpus has to be a string or list of ids')
|
||||
|
||||
# set the correct cuda visible devices (using pci order)
|
||||
os.environ["CUDA_DEVICE_ORDER"] = "PCI_BUS_ID"
|
||||
os.environ["CUDA_VISIBLE_DEVICES"] = ','.join([str(x) for x in self.data_parallel_device_ids])
|
||||
print(f'VISIBLE GPUS: {os.environ["CUDA_VISIBLE_DEVICES"]}')
|
||||
|
||||
# make DP and DDP mutually exclusive
|
||||
# single GPU will also use DP with devices=[0]
|
||||
have_gpus = self.data_parallel_device_ids is not None and len(self.data_parallel_device_ids) > 0
|
||||
if have_gpus:
|
||||
self.use_dp = distributed_backend == 'dp'
|
||||
self.use_ddp = distributed_backend == 'ddp'
|
||||
|
||||
# use ddp automatically if nb_gpu_nodes > 1
|
||||
if nb_gpu_nodes > 1 and self.use_dp:
|
||||
self.use_ddp = True
|
||||
self.use_dp = False
|
||||
w = 'DataParallel does not support nb_gpu_nodes > 1. ' \
|
||||
'Switching to DistributedDataParallel for you. ' \
|
||||
'To silence this warning set distributed_backend=ddp'
|
||||
warnings.warn(w)
|
||||
|
||||
# process info
|
||||
self.proc_rank = 0
|
||||
|
||||
# training state
|
||||
self.optimizers = None
|
||||
@@ -101,11 +210,25 @@ class Trainer(TrainerIO):
|
||||
self.__determine_data_use_amount(train_percent_check, val_percent_check, test_percent_check, overfit_pct)
|
||||
print('gpu available: {}, used: {}'.format(torch.cuda.is_available(), self.on_gpu))
|
||||
|
||||
# apex test
|
||||
# 16 bit mixed precision training using apex
|
||||
self.use_amp = use_amp and APEX_AVAILABLE
|
||||
if self.use_amp:
|
||||
print('using 16bit precision')
|
||||
|
||||
if use_amp and not APEX_AVAILABLE:
|
||||
msg = '''
|
||||
You set use_amp=True but do not have apex installed.
|
||||
Install apex first using this guide and rerun with use_amp=True:
|
||||
https://github.com/NVIDIA/apex#linux
|
||||
|
||||
this run will NOT use 16 bit precision
|
||||
'''
|
||||
warnings.warn(msg)
|
||||
|
||||
@property
|
||||
def data_parallel(self):
|
||||
return self.use_dp or self.use_ddp
|
||||
|
||||
def __determine_data_use_amount(self, train_percent_check, val_percent_check, test_percent_check, overfit_pct):
|
||||
"""
|
||||
Use less data for debugging purposes
|
||||
@@ -118,24 +241,30 @@ class Trainer(TrainerIO):
|
||||
self.val_percent_check = overfit_pct
|
||||
self.test_percent_check = overfit_pct
|
||||
|
||||
def __get_model(self):
|
||||
return self.model.module if self.data_parallel else self.model
|
||||
|
||||
def __is_function_implemented(self, f_name):
|
||||
f_op = getattr(self.model, f_name, None)
|
||||
model = self.__get_model()
|
||||
f_op = getattr(model, f_name, None)
|
||||
return callable(f_op)
|
||||
|
||||
@property
|
||||
def __tng_tqdm_dic(self):
|
||||
tqdm_dic = {
|
||||
'tng_loss': '{0:.3f}'.format(self.avg_loss),
|
||||
'gpu': '{}'.format(self.current_gpu_name),
|
||||
'v_nb': '{}'.format(self.experiment.version),
|
||||
'epoch': '{}'.format(self.current_epoch),
|
||||
'batch_nb':'{}'.format(self.batch_nb),
|
||||
}
|
||||
tqdm_dic.update(self.tqdm_metrics)
|
||||
|
||||
if self.on_gpu:
|
||||
tqdm_dic['gpu'] = '{}'.format(self.current_gpu_name)
|
||||
|
||||
return tqdm_dic
|
||||
|
||||
def __layout_bookeeping(self, model):
|
||||
def __layout_bookeeping(self):
|
||||
# training bookeeping
|
||||
self.total_batch_nb = 0
|
||||
self.running_loss = []
|
||||
@@ -144,17 +273,17 @@ class Trainer(TrainerIO):
|
||||
self.tqdm_metrics = {}
|
||||
|
||||
# determine number of training batches
|
||||
self.nb_tng_batches = model.nb_batches(self.tng_dataloader)
|
||||
self.nb_tng_batches = len(self.tng_dataloader)
|
||||
self.nb_tng_batches = int(self.nb_tng_batches * self.train_percent_check)
|
||||
|
||||
# determine number of validation batches
|
||||
self.nb_val_batches = model.nb_batches(self.val_dataloader)
|
||||
self.nb_val_batches = len(self.val_dataloader)
|
||||
self.nb_val_batches = int(self.nb_val_batches * self.val_percent_check)
|
||||
self.nb_val_batches = max(1, self.nb_val_batches)
|
||||
self.nb_val_batches = self.nb_val_batches
|
||||
|
||||
# determine number of test batches
|
||||
self.nb_test_batches = model.nb_batches(self.test_dataloader)
|
||||
self.nb_test_batches = len(self.test_dataloader)
|
||||
self.nb_test_batches = int(self.nb_test_batches * self.test_percent_check)
|
||||
|
||||
# determine when to check validation
|
||||
@@ -175,12 +304,9 @@ class Trainer(TrainerIO):
|
||||
:param max_batches: Scalar
|
||||
:return:
|
||||
"""
|
||||
print('validating...')
|
||||
|
||||
# enable eval mode
|
||||
model.zero_grad()
|
||||
model.eval()
|
||||
model.from_lightning = True
|
||||
|
||||
# disable gradients to save memory
|
||||
torch.set_grad_enabled(False)
|
||||
@@ -201,9 +327,12 @@ class Trainer(TrainerIO):
|
||||
# -----------------
|
||||
# RUN VALIDATION STEP
|
||||
# -----------------
|
||||
if self.data_parallel:
|
||||
if self.use_ddp:
|
||||
output = model(data_batch, batch_i)
|
||||
elif self.use_dp:
|
||||
output = model(data_batch, batch_i)
|
||||
output = reduce_distributed_output(output, len(self.data_parallel_device_ids))
|
||||
|
||||
else:
|
||||
output = model.validation_step(data_batch, batch_i)
|
||||
|
||||
@@ -237,30 +366,210 @@ class Trainer(TrainerIO):
|
||||
self.test_dataloader = model.test_dataloader
|
||||
self.val_dataloader = model.val_dataloader
|
||||
|
||||
if self.use_ddp and not isinstance(self.tng_dataloader.sampler, DistributedSampler):
|
||||
msg = '''
|
||||
when using multiple gpus and multiple nodes you must pass a DistributedSampler to DataLoader(sampler).
|
||||
|
||||
ie: this:
|
||||
dataset = myDataset()
|
||||
dataloader = Dataloader(dataset)
|
||||
|
||||
becomes:
|
||||
dataset = myDataset()
|
||||
dist_sampler = torch.utils.data.distributed.DistributedSampler(dataset)
|
||||
dataloader = Dataloader(dataset, sampler=dist_sampler)
|
||||
'''
|
||||
raise Exception(msg)
|
||||
|
||||
# -----------------------------
|
||||
# MODEL TRAINING
|
||||
# -----------------------------
|
||||
def fit(self, model):
|
||||
|
||||
model.trainer = self
|
||||
# when using multi-node or DDP within a node start each module in a separate process
|
||||
if self.use_ddp:
|
||||
# must copy only the meta of the exp so it survives pickle/unpickle when going to new process
|
||||
self.experiment = self.experiment.get_meta_copy()
|
||||
|
||||
# transfer data loaders from model
|
||||
self.__get_dataloaders(model)
|
||||
# whenever we have the correct number of tasks, we let slurm manage processes
|
||||
# otherwise we launch the required number of processes
|
||||
nb_requested_gpus = len(self.data_parallel_device_ids) * self.nb_gpu_nodes
|
||||
nb_slurm_tasks = 0
|
||||
try:
|
||||
nb_slurm_tasks = int(os.environ['SLURM_NTASKS'])
|
||||
is_slurm_managing_tasks = nb_slurm_tasks == nb_requested_gpus
|
||||
except Exception as e:
|
||||
# likely not on slurm, so set the slurm managed flag to false
|
||||
is_slurm_managing_tasks = False
|
||||
|
||||
# init training constants
|
||||
self.__layout_bookeeping(model)
|
||||
if is_slurm_managing_tasks:
|
||||
task = int(os.environ['SLURM_LOCALID'])
|
||||
self.ddp_train(task, model)
|
||||
else:
|
||||
msg = f"""
|
||||
You requested {nb_requested_gpus} GPUs but launched {nb_slurm_tasks} slurm tasks.
|
||||
We will launch {nb_requested_gpus} processes for you.
|
||||
We recommend you let slurm manage the processes by setting: --ntasks-per-node={nb_requested_gpus}
|
||||
If you're not using SLURM, ignore this message!
|
||||
"""
|
||||
warnings.warn(msg)
|
||||
mp.spawn(self.ddp_train, nprocs=len(self.data_parallel_device_ids), args=(model, ))
|
||||
|
||||
# 1 gpu or dp option triggers training using DP module
|
||||
# easier to avoid NCCL issues
|
||||
elif self.use_dp:
|
||||
self.dp_train(model)
|
||||
|
||||
# ON CPU
|
||||
else:
|
||||
# CHOOSE OPTIMIZER
|
||||
# filter out the weights that were done on gpu so we can load on good old cpus
|
||||
self.optimizers = model.configure_optimizers()
|
||||
|
||||
# run through amp wrapper
|
||||
if self.use_amp:
|
||||
# An example
|
||||
model, optimizers = amp.initialize(
|
||||
model, self.optimizers, opt_level=self.amp_level,
|
||||
)
|
||||
self.optimizers = optimizers
|
||||
|
||||
self.__run_pretrain_routine(model)
|
||||
|
||||
def dp_train(self, model):
|
||||
|
||||
# CHOOSE OPTIMIZER
|
||||
# filter out the weights that were done on gpu so we can load on good old cpus
|
||||
self.optimizers = model.configure_optimizers()
|
||||
|
||||
model.cuda(self.data_parallel_device_ids[0])
|
||||
|
||||
# run through amp wrapper
|
||||
if self.use_amp:
|
||||
# An example
|
||||
model, optimizer = amp.initialize(
|
||||
model, self.optimizers[0], opt_level=self.amp_level,
|
||||
model, optimizers = amp.initialize(
|
||||
model, self.optimizers, opt_level=self.amp_level,
|
||||
)
|
||||
self.optimizers[0] = optimizer
|
||||
model.trainer = self
|
||||
self.optimizers = optimizers
|
||||
|
||||
model = LightningDataParallel(model, device_ids=self.data_parallel_device_ids)
|
||||
|
||||
self.__run_pretrain_routine(model)
|
||||
|
||||
def ddp_train(self, gpu_nb, model):
|
||||
"""
|
||||
Entry point into a DP thread
|
||||
:param gpu_nb:
|
||||
:param model:
|
||||
:param cluster_obj:
|
||||
:return:
|
||||
"""
|
||||
# node rank using relative slurm id
|
||||
# otherwise default to node rank 0
|
||||
try:
|
||||
node_id = os.environ['SLURM_NODEID']
|
||||
self.node_rank = int(node_id)
|
||||
except Exception as e:
|
||||
self.node_rank = 0
|
||||
|
||||
# recover original exp before went into process
|
||||
# init in write mode only on proc 0
|
||||
self.experiment.debug = self.proc_rank > 0
|
||||
self.experiment = self.experiment.get_non_ddp_exp()
|
||||
|
||||
# show progbar only on prog_rank 0
|
||||
self.prog_bar = self.prog_bar and self.node_rank == 0 and gpu_nb == 0
|
||||
|
||||
# determine which process we are and world size
|
||||
self.proc_rank = self.node_rank * len(self.data_parallel_device_ids) + gpu_nb
|
||||
self.world_size = self.nb_gpu_nodes * len(self.data_parallel_device_ids)
|
||||
|
||||
# set up server using proc 0's ip address
|
||||
# try to init for 20 times at max in case ports are taken
|
||||
# where to store ip_table
|
||||
self.__init_tcp_connection()
|
||||
|
||||
# CHOOSE OPTIMIZER
|
||||
# filter out the weights that were done on gpu so we can load on good old cpus
|
||||
self.optimizers = model.configure_optimizers()
|
||||
|
||||
# MODEL
|
||||
# copy model to each gpu
|
||||
torch.cuda.set_device(gpu_nb)
|
||||
model.cuda(gpu_nb)
|
||||
|
||||
# AMP
|
||||
# run through amp wrapper before going to distributed DP
|
||||
if self.use_amp:
|
||||
# An example
|
||||
model, optimizers = amp.initialize(
|
||||
model, self.optimizers, opt_level=self.amp_level,
|
||||
)
|
||||
self.optimizers = optimizers
|
||||
|
||||
model = LightningDistributedDataParallel(model, device_ids=[gpu_nb], find_unused_parameters=True)
|
||||
|
||||
# continue training routine
|
||||
self.__run_pretrain_routine(model)
|
||||
|
||||
def __init_tcp_connection(self):
|
||||
"""
|
||||
Connect all procs in the world using the env:// init
|
||||
Use the first node as the root address
|
||||
:param port:
|
||||
:param tries:
|
||||
:return:
|
||||
"""
|
||||
try:
|
||||
port = os.environ['MASTER_PORT']
|
||||
except Exception as e:
|
||||
port = 12910
|
||||
os.environ['MASTER_PORT'] = f'{port}'
|
||||
|
||||
root_node = self.__resolve_root_node_address()
|
||||
os.environ['MASTER_ADDR'] = root_node
|
||||
|
||||
dist.init_process_group("nccl", rank=self.proc_rank, world_size=self.world_size)
|
||||
|
||||
|
||||
def __resolve_root_node_address(self):
|
||||
try:
|
||||
root_node = os.environ['SLURM_NODELIST'].split(' ')[0]
|
||||
|
||||
if '[' in root_node:
|
||||
name = root_node.split('[')[0]
|
||||
number = root_node.split(',')[0]
|
||||
if '-' in number:
|
||||
number = number.split('-')[0]
|
||||
|
||||
number = re.sub('[^0-9]', '', number)
|
||||
root_node = name + number
|
||||
|
||||
except Exception as e:
|
||||
root_node = '127.0.0.2'
|
||||
|
||||
return root_node
|
||||
|
||||
def __run_pretrain_routine(self, model):
|
||||
"""
|
||||
Sanity check a few things before starting actual training
|
||||
:param model:
|
||||
:return:
|
||||
"""
|
||||
ref_model = model
|
||||
if self.data_parallel:
|
||||
ref_model = model.module
|
||||
|
||||
ref_model.trainer = self
|
||||
|
||||
# set local properties on the model
|
||||
ref_model.on_gpu = self.on_gpu
|
||||
|
||||
# transfer data loaders from model
|
||||
self.__get_dataloaders(ref_model)
|
||||
|
||||
# init training constants
|
||||
self.__layout_bookeeping()
|
||||
|
||||
# add lr schedulers
|
||||
if self.lr_scheduler_milestones is not None:
|
||||
@@ -269,17 +578,19 @@ class Trainer(TrainerIO):
|
||||
self.lr_schedulers.append(scheduler)
|
||||
|
||||
# print model summary
|
||||
model.summarize()
|
||||
if self.proc_rank == 0 and self.print_weights_summary:
|
||||
ref_model.summarize()
|
||||
|
||||
# put on gpu if needed
|
||||
if self.on_gpu:
|
||||
model = LightningDataParallel(model, device_ids=self.data_parallel_device_ids)
|
||||
# give model convenience properties
|
||||
ref_model.trainer = self
|
||||
ref_model.experiment = self.experiment
|
||||
|
||||
# run tiny validation to make sure program won't crash during val
|
||||
_ = self.validate(model, self.val_dataloader, max_batches=self.nb_sanity_val_steps)
|
||||
|
||||
# save exp to get started
|
||||
self.experiment.save()
|
||||
if self.proc_rank == 0:
|
||||
self.experiment.save()
|
||||
|
||||
# enable cluster checkpointing
|
||||
if self.cluster is not None:
|
||||
@@ -298,12 +609,12 @@ class Trainer(TrainerIO):
|
||||
for lr_scheduler in self.lr_schedulers:
|
||||
lr_scheduler.step()
|
||||
|
||||
model = self.model.module if self.data_parallel else self.model
|
||||
model = self.__get_model()
|
||||
model.current_epoch = epoch_nb
|
||||
|
||||
# hook
|
||||
if self.__is_function_implemented('on_epoch_start'):
|
||||
model = self.model.module if self.data_parallel else self.model
|
||||
model = self.__get_model()
|
||||
model.on_epoch_start()
|
||||
|
||||
self.current_epoch = epoch_nb
|
||||
@@ -318,7 +629,7 @@ class Trainer(TrainerIO):
|
||||
self.batch_nb = batch_nb
|
||||
self.global_step += 1
|
||||
|
||||
model = self.model.module if self.data_parallel else self.model
|
||||
model = self.__get_model()
|
||||
model.global_step = self.global_step
|
||||
|
||||
# stop when the flag is changed or we've gone past the amount requested in the batches
|
||||
@@ -342,17 +653,16 @@ class Trainer(TrainerIO):
|
||||
|
||||
# when batch should be saved
|
||||
if (batch_nb + 1) % self.log_save_interval == 0 or early_stop_epoch:
|
||||
self.experiment.save()
|
||||
if self.proc_rank == 0:
|
||||
self.experiment.save()
|
||||
|
||||
# when metrics should be logged
|
||||
if batch_nb % self.add_log_row_interval == 0 or early_stop_epoch:
|
||||
# count items in memory
|
||||
# nb_params, nb_tensors = count_mem_items()
|
||||
|
||||
if self.data_parallel:
|
||||
metrics = self.model.module.update_tng_log_metrics(self.__tng_tqdm_dic)
|
||||
else:
|
||||
metrics = self.model.update_tng_log_metrics(self.__tng_tqdm_dic)
|
||||
model = self.__get_model()
|
||||
metrics = model.update_tng_log_metrics(self.__tng_tqdm_dic)
|
||||
|
||||
# add gpu memory
|
||||
if self.on_gpu:
|
||||
@@ -361,18 +671,22 @@ class Trainer(TrainerIO):
|
||||
|
||||
# add norms
|
||||
if self.track_grad_norm > 0:
|
||||
model = self.model.module if self.data_parallel else self.model
|
||||
model = self.__get_model()
|
||||
grad_norm_dic = model.grad_norm(self.track_grad_norm)
|
||||
|
||||
metrics.update(grad_norm_dic)
|
||||
|
||||
if self.__is_function_implemented('on_tng_metrics'):
|
||||
model.on_tng_metrics(metrics)
|
||||
|
||||
# log metrics
|
||||
self.experiment.log(metrics)
|
||||
self.experiment.save()
|
||||
scalar_metrics = self.__metrics_to_scalars(metrics, blacklist=self.__log_vals_blacklist())
|
||||
if self.proc_rank == 0:
|
||||
self.experiment.log(scalar_metrics, global_step=self.global_step)
|
||||
self.experiment.save()
|
||||
|
||||
# hook
|
||||
if self.__is_function_implemented('on_batch_end'):
|
||||
model = self.model.module if self.data_parallel else self.model
|
||||
model = self.__get_model()
|
||||
model.on_batch_end()
|
||||
|
||||
# end epoch early
|
||||
@@ -381,19 +695,37 @@ class Trainer(TrainerIO):
|
||||
|
||||
# hook
|
||||
if self.__is_function_implemented('on_epoch_end'):
|
||||
model = self.model.module if self.data_parallel else self.model
|
||||
model = self.__get_model()
|
||||
model.on_epoch_end()
|
||||
|
||||
# early stopping
|
||||
if self.enable_early_stop:
|
||||
met_min_epochs = epoch_nb > self.min_nb_epochs
|
||||
if self.enable_early_stop and met_min_epochs:
|
||||
should_stop = self.early_stop_callback.on_epoch_end(epoch=epoch_nb, logs=self.__tng_tqdm_dic)
|
||||
met_min_epochs = epoch_nb > self.min_nb_epochs
|
||||
|
||||
# stop training
|
||||
stop = should_stop and met_min_epochs
|
||||
if stop:
|
||||
return
|
||||
|
||||
def __metrics_to_scalars(self, metrics, blacklist=[]):
|
||||
new_metrics = {}
|
||||
for k, v in metrics.items():
|
||||
if type(v) is torch.Tensor:
|
||||
v = v.item()
|
||||
|
||||
if type(v) is dict:
|
||||
v = self.__metrics_to_scalars(v)
|
||||
|
||||
if k not in blacklist:
|
||||
new_metrics[k] = float(v)
|
||||
|
||||
return new_metrics
|
||||
|
||||
def __log_vals_blacklist(self):
|
||||
"""avoid logging some vals lightning uses to maintain state"""
|
||||
blacklist = {'batch_nb', 'v_nb', 'gpu'}
|
||||
return blacklist
|
||||
|
||||
def __run_tng_batch(self, data_batch, batch_nb):
|
||||
if data_batch is None:
|
||||
@@ -401,8 +733,8 @@ class Trainer(TrainerIO):
|
||||
|
||||
# hook
|
||||
if self.__is_function_implemented('on_batch_start'):
|
||||
model = self.model.module if self.data_parallel else self.model
|
||||
response = model.on_batch_start(data_batch)
|
||||
model_ref = self.__get_model()
|
||||
response = model_ref.on_batch_start(data_batch)
|
||||
|
||||
if response == -1:
|
||||
return -1
|
||||
@@ -412,39 +744,68 @@ class Trainer(TrainerIO):
|
||||
|
||||
# forward pass
|
||||
# return a scalar value and a dic with tqdm metrics
|
||||
if self.data_parallel:
|
||||
if self.use_ddp:
|
||||
output = self.model(data_batch, batch_nb)
|
||||
elif self.use_dp:
|
||||
output = self.model(data_batch, batch_nb)
|
||||
output = reduce_distributed_output(output, len(self.data_parallel_device_ids))
|
||||
else:
|
||||
output = self.model.training_step(data_batch, batch_nb)
|
||||
|
||||
model_specific_tqdm_metrics_dic = output['tqdm_metrics']
|
||||
loss = output['loss']
|
||||
try:
|
||||
model_specific_tqdm_metrics_dic = output['tqdm_metrics']
|
||||
except Exception as e:
|
||||
model_specific_tqdm_metrics_dic = {}
|
||||
|
||||
# if output dict doesn't have the keyword loss
|
||||
# then assume the output=loss if scalar
|
||||
try:
|
||||
loss = output['loss']
|
||||
except Exception as e:
|
||||
if type(output) is torch.Tensor:
|
||||
loss = output
|
||||
|
||||
self.__add_tqdm_metrics(model_specific_tqdm_metrics_dic)
|
||||
|
||||
# backward pass
|
||||
if self.use_amp:
|
||||
# scale loss when using amp
|
||||
for optimizer in self.optimizers:
|
||||
with amp.scale_loss(loss, optimizer) as scaled_loss:
|
||||
scaled_loss.backward()
|
||||
else:
|
||||
loss.backward()
|
||||
|
||||
# insert after step hook
|
||||
if self.__is_function_implemented('on_after_backward'):
|
||||
model_ref = self.__get_model()
|
||||
response = model_ref.on_after_backward()
|
||||
|
||||
if self.print_nan_grads:
|
||||
model = self.model.module if self.data_parallel else self.model
|
||||
model = self.__get_model()
|
||||
for param in model.parameters():
|
||||
print(param.grad.float().sum())
|
||||
|
||||
# avoid memory leaks
|
||||
self.batch_loss_value += loss.item()
|
||||
|
||||
# gradient update with accumulated gradients
|
||||
if (self.batch_nb + 1) % self.accumulate_grad_batches == 0:
|
||||
|
||||
# clip gradients
|
||||
if self.gradient_clip > 0:
|
||||
model = self.__get_model()
|
||||
torch.nn.utils.clip_grad_norm(model.parameters(), self.gradient_clip)
|
||||
|
||||
# update gradients across all optimizers
|
||||
for optimizer in self.optimizers:
|
||||
optimizer.step()
|
||||
|
||||
# insert after step hook
|
||||
if self.__is_function_implemented('on_before_zero_grad'):
|
||||
model_ref = self.__get_model()
|
||||
response = model_ref.on_before_zero_grad(optimizer)
|
||||
|
||||
# clear gradients
|
||||
optimizer.zero_grad()
|
||||
|
||||
@@ -464,7 +825,8 @@ class Trainer(TrainerIO):
|
||||
|
||||
# activate batch end hook
|
||||
if self.__is_function_implemented('on_batch_end'):
|
||||
self.model.on_batch_end()
|
||||
model = self.__get_model()
|
||||
model.on_batch_end()
|
||||
|
||||
return 0
|
||||
|
||||
@@ -479,7 +841,8 @@ class Trainer(TrainerIO):
|
||||
try:
|
||||
# hook
|
||||
if self.__is_function_implemented('on_pre_performance_check'):
|
||||
self.model.on_pre_performance_check()
|
||||
model = self.__get_model()
|
||||
model.on_pre_performance_check()
|
||||
|
||||
# use full val set on end of epoch
|
||||
# use a small portion otherwise
|
||||
@@ -493,7 +856,8 @@ class Trainer(TrainerIO):
|
||||
|
||||
# hook
|
||||
if self.__is_function_implemented('on_post_performance_check'):
|
||||
self.model.on_post_performance_check()
|
||||
model = self.__get_model()
|
||||
model.on_post_performance_check()
|
||||
|
||||
except Exception as e:
|
||||
print(e)
|
||||
@@ -505,5 +869,6 @@ class Trainer(TrainerIO):
|
||||
self.prog_bar.set_postfix(**tqdm_metrics)
|
||||
|
||||
# model checkpointing
|
||||
print('save callback...')
|
||||
self.checkpoint_callback.on_epoch_end(epoch=self.current_epoch, logs=self.__tng_tqdm_dic)
|
||||
if self.proc_rank == 0 and self.checkpoint_callback:
|
||||
print('save callback...')
|
||||
self.checkpoint_callback.on_epoch_end(epoch=self.current_epoch, logs=self.__tng_tqdm_dic)
|
||||
|
||||
@@ -1,4 +1,7 @@
|
||||
from torch.nn import DataParallel
|
||||
from torch.nn.parallel import DistributedDataParallel
|
||||
import itertools
|
||||
from itertools import chain
|
||||
|
||||
import threading
|
||||
import torch
|
||||
@@ -6,6 +9,20 @@ from torch.cuda._utils import _get_device_index
|
||||
import pdb
|
||||
|
||||
|
||||
def _find_tensors(obj):
|
||||
r"""
|
||||
Recursively find all tensors contained in the specified object.
|
||||
"""
|
||||
if isinstance(obj, torch.Tensor):
|
||||
return [obj]
|
||||
if isinstance(obj, (list, tuple)):
|
||||
return itertools.chain(*map(_find_tensors, obj))
|
||||
if isinstance(obj, dict):
|
||||
return itertools.chain(*map(_find_tensors, obj.values()))
|
||||
return []
|
||||
|
||||
|
||||
|
||||
def get_a_var(obj):
|
||||
if isinstance(obj, torch.Tensor):
|
||||
return obj
|
||||
@@ -26,10 +43,76 @@ class LightningDataParallel(DataParallel):
|
||||
Override the forward call in lightning so it goes to training and validation step respectively
|
||||
"""
|
||||
|
||||
def forward(self, *inputs, **kwargs):
|
||||
if not self.device_ids:
|
||||
return self.module(*inputs, **kwargs)
|
||||
|
||||
for t in chain(self.module.parameters(), self.module.buffers()):
|
||||
if t.device != self.src_device_obj:
|
||||
raise RuntimeError("module must have its parameters and buffers "
|
||||
"on device {} (device_ids[0]) but found one of "
|
||||
"them on device: {}".format(self.src_device_obj, t.device))
|
||||
|
||||
inputs, kwargs = self.scatter(inputs, kwargs, self.device_ids)
|
||||
if len(self.device_ids) == 1:
|
||||
# lightning
|
||||
if self.module.training:
|
||||
return self.module.training_step(*inputs[0], **kwargs[0])
|
||||
else:
|
||||
return self.module.validation_step(*inputs[0], **kwargs[0])
|
||||
|
||||
replicas = self.replicate(self.module, self.device_ids[:len(inputs)])
|
||||
outputs = self.parallel_apply(replicas, inputs, kwargs)
|
||||
return self.gather(outputs, self.output_device)
|
||||
|
||||
|
||||
def parallel_apply(self, replicas, inputs, kwargs):
|
||||
return parallel_apply(replicas, inputs, kwargs, self.device_ids[:len(replicas)])
|
||||
|
||||
|
||||
class LightningDistributedDataParallel(DistributedDataParallel):
|
||||
"""
|
||||
Override the forward call in lightning so it goes to training and validation step respectively
|
||||
"""
|
||||
|
||||
def parallel_apply(self, replicas, inputs, kwargs):
|
||||
return parallel_apply(replicas, inputs, kwargs, self.device_ids[:len(replicas)])
|
||||
|
||||
def forward(self, *inputs, **kwargs):
|
||||
self._sync_params()
|
||||
if self.device_ids:
|
||||
inputs, kwargs = self.scatter(inputs, kwargs, self.device_ids)
|
||||
if len(self.device_ids) == 1:
|
||||
# --------------
|
||||
# LIGHTNING MOD
|
||||
# --------------
|
||||
# normal
|
||||
# output = self.module(*inputs[0], **kwargs[0])
|
||||
|
||||
# lightning
|
||||
if self.module.training:
|
||||
output = self.module.training_step(*inputs[0], **kwargs[0])
|
||||
else:
|
||||
output = self.module.validation_step(*inputs[0], **kwargs[0])
|
||||
else:
|
||||
outputs = self.parallel_apply(self._module_copies[:len(inputs)], inputs, kwargs)
|
||||
output = self.gather(outputs, self.output_device)
|
||||
else:
|
||||
output = self.module(*inputs, **kwargs)
|
||||
|
||||
if torch.is_grad_enabled():
|
||||
# We'll return the output object verbatim since it is a freeform
|
||||
# object. We need to find any tensors in this object, though,
|
||||
# because we need to figure out which parameters were used during
|
||||
# this forward pass, to ensure we short circuit reduction for any
|
||||
# unused parameters. Only if `find_unused_parameters` is set.
|
||||
if self.find_unused_parameters:
|
||||
self.reducer.prepare_for_backward(list(_find_tensors(output)))
|
||||
else:
|
||||
self.reducer.prepare_for_backward([])
|
||||
return output
|
||||
|
||||
|
||||
def parallel_apply(modules, inputs, kwargs_tup=None, devices=None):
|
||||
r"""Applies each `module` in :attr:`modules` in parallel on arguments
|
||||
contained in :attr:`inputs` (positional) and :attr:`kwargs_tup` (keyword)
|
||||
@@ -102,4 +185,4 @@ def parallel_apply(modules, inputs, kwargs_tup=None, devices=None):
|
||||
if isinstance(output, Exception):
|
||||
raise output
|
||||
outputs.append(output)
|
||||
return outputs
|
||||
return outputs
|
||||
|
||||
@@ -19,3 +19,27 @@ class ModelHooks(torch.nn.Module):
|
||||
def on_post_performance_check(self):
|
||||
pass
|
||||
|
||||
def on_tng_metrics(self, metrics):
|
||||
pass
|
||||
|
||||
def on_before_zero_grad(self, optimizer):
|
||||
"""
|
||||
Called after optimizer.step() and before optimizer.zero_grad()
|
||||
|
||||
for optimizer in optimizers:
|
||||
optimizer.step()
|
||||
model.on_before_zero_grad(optimizer) # < ---- called here
|
||||
optimizer.zero_grad
|
||||
|
||||
:param optimizer:
|
||||
:return:
|
||||
"""
|
||||
pass
|
||||
|
||||
def on_after_backward(self):
|
||||
"""
|
||||
Called after loss.backward() and before optimizers do anything
|
||||
:return:
|
||||
"""
|
||||
pass
|
||||
|
||||
|
||||
@@ -2,7 +2,7 @@ import torch
|
||||
import os
|
||||
import re
|
||||
import pdb
|
||||
from pytorch_lightning.pt_overrides.override_data_parallel import LightningDataParallel
|
||||
from pytorch_lightning.pt_overrides.override_data_parallel import LightningDistributedDataParallel, LightningDataParallel
|
||||
|
||||
class ModelIO(object):
|
||||
|
||||
@@ -21,6 +21,23 @@ class ModelIO(object):
|
||||
"""
|
||||
raise NotImplementedError
|
||||
|
||||
# -------------------------
|
||||
# OPTIONAL HOOKS
|
||||
# -------------------------
|
||||
def on_hpc_save(self):
|
||||
"""
|
||||
Hook to do whatever you need right before Slurm manager saves the model
|
||||
:return:
|
||||
"""
|
||||
pass
|
||||
|
||||
def on_hpc_load(self):
|
||||
"""
|
||||
Hook to do whatever you need right before Slurm manager loads the model
|
||||
:return:
|
||||
"""
|
||||
pass
|
||||
|
||||
|
||||
class TrainerIO(object):
|
||||
|
||||
@@ -49,7 +66,8 @@ class TrainerIO(object):
|
||||
checkpoint['optimizer_states'] = optimizer_states
|
||||
|
||||
# request what to save from the model
|
||||
model = self.model.module if type(self.model) is LightningDataParallel else self.model
|
||||
is_dp_module = type(self.model) is LightningDistributedDataParallel or type(self.model) is LightningDataParallel
|
||||
model = self.model.module if is_dp_module else self.model
|
||||
checkpoint_dict = model.get_save_dict()
|
||||
|
||||
# merge trainer and model saving items
|
||||
@@ -107,12 +125,18 @@ class TrainerIO(object):
|
||||
# save exp to make sure we get all the metrics
|
||||
experiment.save()
|
||||
|
||||
# close experiment to avoid issues
|
||||
experiment.close()
|
||||
|
||||
ckpt_number = self.max_ckpt_in_folder(folderpath) + 1
|
||||
|
||||
if not os.path.exists(folderpath):
|
||||
os.makedirs(folderpath, exist_ok=True)
|
||||
filepath = '{}/hpc_ckpt_{}.ckpt'.format(folderpath, ckpt_number)
|
||||
|
||||
# give model a chance to do something on hpc_save
|
||||
self.on_hpc_save()
|
||||
|
||||
# request what to save from the model
|
||||
checkpoint_dict = self.dump_checkpoint()
|
||||
|
||||
@@ -134,6 +158,9 @@ class TrainerIO(object):
|
||||
model = self.model.module if type(self.model) is LightningDataParallel else self.model
|
||||
model.load_model_specific(checkpoint)
|
||||
|
||||
# call model hook
|
||||
self.on_hpc_load()
|
||||
|
||||
def max_ckpt_in_folder(self, path):
|
||||
files = os.listdir(path)
|
||||
files = [x for x in files if 'ckpt_' in x]
|
||||
|
||||
@@ -9,7 +9,6 @@ from pytorch_lightning.root_module.optimization import OptimizerConfig
|
||||
from pytorch_lightning.root_module.hooks import ModelHooks
|
||||
|
||||
|
||||
|
||||
class LightningModule(GradInformation, ModelIO, OptimizerConfig, ModelHooks):
|
||||
|
||||
def __init__(self, hparams):
|
||||
@@ -21,29 +20,17 @@ class LightningModule(GradInformation, ModelIO, OptimizerConfig, ModelHooks):
|
||||
self.current_epoch = 0
|
||||
self.global_step = 0
|
||||
self.loaded_optimizer_states_dict = {}
|
||||
self.fast_dev_run = hparams.fast_dev_run
|
||||
self.overfit = hparams.overfit
|
||||
self.gradient_clip = hparams.gradient_clip
|
||||
self.num = 2
|
||||
self.trainer = None
|
||||
self.from_lightning = True
|
||||
self.experiment = None
|
||||
|
||||
# track if gpu was requested for checkpointing
|
||||
self.on_gpu = False
|
||||
try:
|
||||
self.on_gpu = hparams.on_gpu
|
||||
except Exception as e:
|
||||
pass
|
||||
|
||||
# computed vars for the dataloaders
|
||||
self._tng_dataloader = None
|
||||
self._val_dataloader = None
|
||||
self._test_dataloader = None
|
||||
|
||||
if self.on_gpu:
|
||||
print('running on gpu...')
|
||||
torch.set_default_tensor_type(hparams.default_tensor_type)
|
||||
|
||||
def forward(self, *args, **kwargs):
|
||||
"""
|
||||
Expand model in into whatever you need.
|
||||
@@ -91,7 +78,7 @@ class LightningModule(GradInformation, ModelIO, OptimizerConfig, ModelHooks):
|
||||
:param logs:
|
||||
:return:
|
||||
"""
|
||||
raise NotImplementedError
|
||||
return logs
|
||||
|
||||
def loss(self, *args, **kwargs):
|
||||
"""
|
||||
@@ -105,9 +92,6 @@ class LightningModule(GradInformation, ModelIO, OptimizerConfig, ModelHooks):
|
||||
model_summary = ModelSummary(self)
|
||||
print(model_summary)
|
||||
|
||||
def nb_batches(self, dataloader):
|
||||
a = math.ceil(float(len(dataloader.dataset) / self.batch_size))
|
||||
return int(a)
|
||||
|
||||
def freeze(self):
|
||||
for param in self.parameters():
|
||||
@@ -145,7 +129,7 @@ class LightningModule(GradInformation, ModelIO, OptimizerConfig, ModelHooks):
|
||||
def get_process_position(gpus):
|
||||
try:
|
||||
current_gpu = os.environ["CUDA_VISIBLE_DEVICES"]
|
||||
gpu_ids = gpus.split(';')
|
||||
gpu_ids = gpus.split(',')
|
||||
process_position = gpu_ids.index(current_gpu)
|
||||
return process_position, current_gpu
|
||||
except Exception as e:
|
||||
|
||||
@@ -39,8 +39,8 @@ def add_default_args(parser, root_dir, rand_seed=None, possible_model_names=None
|
||||
parser.add_argument('--model_name', default='', help=','.join(possible_model_names))
|
||||
|
||||
# test_tube settings
|
||||
parser.add_argument('-en', '--tt_name', default='r_lib_')
|
||||
parser.add_argument('-td', '--tt_description', default='test research lib')
|
||||
parser.add_argument('-en', '--tt_name', default='pt_test')
|
||||
parser.add_argument('-td', '--tt_description', default='pytorch lightning test')
|
||||
parser.add_argument('--tt_save_path', default=root_dir + '/test_tube_logs', help='logging dir')
|
||||
parser.add_argument('--enable_single_run', dest='single_run', action='store_true')
|
||||
parser.add_argument('--nb_hopt_trials', default=1, type=int)
|
||||
|
||||
@@ -1,4 +1,3 @@
|
||||
from matplotlib import pyplot as plt
|
||||
import numpy as np
|
||||
np.seterr(divide='ignore', invalid='ignore')
|
||||
|
||||
@@ -13,6 +12,7 @@ def plot_confusion_matrix(cm,
|
||||
This function prints and plots the confusion matrix.
|
||||
Normalization can be applied by setting `normalize=True`.
|
||||
"""
|
||||
from matplotlib import pyplot as plt
|
||||
if normalize:
|
||||
cm = cm.astype('float') / cm.sum(axis=1)[:, np.newaxis]
|
||||
print("Normalized confusion matrix")
|
||||
|
||||
+11
-3
@@ -1,8 +1,8 @@
|
||||
|
||||
atomicwrites==1.2.1
|
||||
attrs==18.2.0
|
||||
certifi==2018.11.29
|
||||
cffi==1.11.5
|
||||
h5py==2.9.0
|
||||
imageio==2.4.1
|
||||
mkl-fft==1.0.6
|
||||
mkl-random==1.0.2
|
||||
@@ -21,7 +21,15 @@ scikit-learn==0.20.2
|
||||
scipy==1.2.0
|
||||
six==1.12.0
|
||||
sklearn==0.0
|
||||
test-tube==0.6282
|
||||
tensorboard==1.14.0
|
||||
tensorboardX==1.7
|
||||
tensorflow==1.14.0
|
||||
test-tube==0.643
|
||||
torch==1.0.0
|
||||
torchvision==0.2.1
|
||||
tqdm==4.28.1
|
||||
tqdm==4.32.1
|
||||
twine==1.13.0
|
||||
urllib3==1.25.3
|
||||
webencodings==0.5.1
|
||||
Werkzeug==0.15.4
|
||||
wrapt==1.11.2
|
||||
|
||||
@@ -7,7 +7,7 @@ from setuptools import setup, find_packages
|
||||
# http://blog.ionelmc.ro/2014/05/25/python-packaging/
|
||||
setup(
|
||||
name="pytorch-lightning",
|
||||
version='0.111',
|
||||
version='0.3.4.1',
|
||||
description="The Keras for ML researchers using PyTorch",
|
||||
author="William Falcon",
|
||||
author_email="waf2107@columbia.edu",
|
||||
@@ -17,9 +17,9 @@ setup(
|
||||
keywords=["deep learning", "pytorch", "AI"],
|
||||
python_requires=">=3.5",
|
||||
install_requires=[
|
||||
"torch>=1.0.0",
|
||||
"torch>=1.1.0",
|
||||
"tqdm",
|
||||
"test-tube",
|
||||
"test-tube>=0.6.7.1",
|
||||
],
|
||||
packages=find_packages(),
|
||||
long_description=open("README.md", encoding="utf-8").read(),
|
||||
|
||||
Reference in New Issue
Block a user