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Author SHA1 Message Date
William Falcon c2e2298586 release v0.2.5.1 2019-07-18 17:14:34 -04:00
William Falcon 319feb7da5 removed printing. added auto process gen if slurm tasks do not match 2019-07-18 17:13:57 -04:00
William Falcon 5195124d4e added slurm no process warning 2019-07-18 17:06:56 -04:00
William Falcon 4e67983f23 added slurm no process warning 2019-07-18 17:05:09 -04:00
William Falcon c02b6c4c88 added slurm no process warning 2019-07-18 17:03:27 -04:00
William Falcon ad44d9168b added slurm no process warning 2019-07-18 16:47:46 -04:00
William Falcon 53a1a6d462 removed print lines 2019-07-18 16:37:48 -04:00
William Falcon 59d60eaf18 testing single process ddp 2019-07-18 15:06:20 -04:00
William Falcon 112be99b19 testing single process ddp 2019-07-18 14:57:56 -04:00
William Falcon 0e67773d2e testing single process ddp 2019-07-18 14:53:01 -04:00
William Falcon 394cdeeb8b added epoch flag back 2019-07-18 13:32:36 -04:00
William Falcon d0a8292e02 release v0.2.5 2019-07-18 12:13:00 -04:00
William Falcon d7409afed9 added arg docs 2019-07-18 12:11:59 -04:00
William Falcon f01cb63234 added arg docs 2019-07-18 12:10:07 -04:00
William Falcon 8be7480f31 added arg docs 2019-07-18 12:09:25 -04:00
William Falcon 751bc7c695 added arg docs 2019-07-18 12:08:47 -04:00
William Falcon 3be26dbb95 added arg docs 2019-07-18 12:08:17 -04:00
William Falcon 2ca0864ce8 added arg docs 2019-07-18 12:07:11 -04:00
William Falcon b1041220ac added arg docs 2019-07-18 12:05:52 -04:00
William Falcon da842c0cd6 added arg docs 2019-07-18 12:04:45 -04:00
William Falcon c4971e8432 added arg docs 2019-07-18 12:04:19 -04:00
William Falcon e81dbce38c set dp as default backend 2019-07-18 11:59:14 -04:00
William Falcon 0d992689d5 set dp as default backend 2019-07-18 11:58:27 -04:00
William Falcon 4085b3fa69 set dp as default backend 2019-07-18 11:57:39 -04:00
William Falcon b684bb55c5 set dp as default backend 2019-07-18 11:56:48 -04:00
William Falcon f98f88ff08 set dp as default backend 2019-07-18 11:51:43 -04:00
William Falcon f0955df4f0 set dp as default backend 2019-07-18 11:50:23 -04:00
William Falcon 7744c7117d set dp as default backend 2019-07-18 11:49:42 -04:00
William Falcon 22f4d6e26e set dp as default backend 2019-07-18 11:49:28 -04:00
William Falcon d49a83dec0 set dp as default backend 2019-07-18 11:48:16 -04:00
William Falcon 6d1d5ef68e set dp as default backend 2019-07-18 11:45:55 -04:00
William Falcon 3a1525222d set dp as default backend 2019-07-18 11:42:47 -04:00
William Falcon f650253cae set dp as default backend 2019-07-18 11:40:10 -04:00
William Falcon c67c84b443 set dp as default backend 2019-07-18 11:40:00 -04:00
William Falcon 4db32984c6 set dp as default backend 2019-07-18 11:39:13 -04:00
William Falcon 81d39786d9 set dp as default backend 2019-07-18 11:39:06 -04:00
William Falcon 63de076765 set dp as default backend 2019-07-18 11:36:48 -04:00
William Falcon 256ca62a3c set dp as default backend 2019-07-18 11:36:31 -04:00
William Falcon 39d04eb795 set dp as default backend 2019-07-18 11:35:59 -04:00
William Falcon e02857fcce set dp as default backend 2019-07-18 11:33:51 -04:00
William Falcon c163caf8cb set dp as default backend 2019-07-18 11:31:45 -04:00
William Falcon 2096a0aa84 set dp as default backend 2019-07-18 11:29:38 -04:00
William Falcon c253f96c53 set dp as default backend 2019-07-18 11:29:21 -04:00
William Falcon 551daca047 set dp as default backend 2019-07-18 11:25:02 -04:00
William Falcon ded0abead7 set dp as default backend 2019-07-18 11:21:35 -04:00
William Falcon e86b191691 set dp as default backend 2019-07-18 11:20:11 -04:00
William Falcon 3321e8c541 set dp as default backend 2019-07-18 11:18:19 -04:00
William Falcon bc3a805202 set dp as default backend 2019-07-18 11:16:16 -04:00
William Falcon 162b9f4f27 set dp as default backend 2019-07-18 11:15:21 -04:00
William Falcon e5bc3ea5b4 added training router 2019-07-18 11:09:37 -04:00
William Falcon baa139f97a added training router 2019-07-18 11:09:00 -04:00
William Falcon 470f3e6d29 added training router 2019-07-18 11:08:48 -04:00
William Falcon c12a0b57da added dp and ddp flag 2019-07-18 11:03:16 -04:00
William Falcon e7ecfa15f8 added option and flag 2019-07-18 10:56:45 -04:00
William Falcon 9051eb0039 updated docs 2019-07-17 15:56:55 -04:00
William Falcon bb8dbfca09 release v0.2.4.1 2019-07-17 10:04:14 -04:00
William Falcon 0240c70780 updated required deps 2019-07-17 10:03:58 -04:00
William Falcon a41abad5b2 Update trainer.py 2019-07-16 17:02:21 -04:00
William Falcon a83588b14e Update trainer.py 2019-07-16 13:12:56 -04:00
William Falcon 80192752b7 Merge pull request #13 from cinjon/on_tng_metrics
add a hook for on_tng_metrics so that users get access to the grad_no…
2019-07-16 12:59:16 -04:00
Cinjon Resnick fbd3873a0f add a hook for on_tng_metrics so that users get access to the grad_norm and mem_map dicts. 2019-07-16 12:51:48 -04:00
William Falcon 28cfddbe65 accept dist sampler classes 2019-07-16 12:44:58 -04:00
William Falcon b4bdb283ce release v0.2.4 2019-07-16 10:05:14 -04:00
William Falcon 967e57f071 early stop starts counting once min epochs met 2019-07-16 10:00:03 -04:00
William Falcon d12f6b7dd8 added summary flag 2019-07-15 21:11:29 -04:00
William Falcon 182c025c88 removed validation call 2019-07-15 20:48:46 -04:00
William Falcon 58e6199ce8 removed validation call 2019-07-15 14:56:56 -04:00
William Falcon 6a33f0d483 made early stop checkpoint optional 2019-07-15 14:54:38 -04:00
William Falcon dd230a93e8 made early stop checkpoint optional 2019-07-15 14:53:37 -04:00
William Falcon 3aa9cfc18e made checkpoint callback optional 2019-07-15 13:18:56 -04:00
William Falcon e57f461323 made checkpoint callback optional 2019-07-15 13:17:38 -04:00
William Falcon ab00514ef6 fixed metrics request not forced anymore 2019-07-15 13:03:08 -04:00
William Falcon 1dd58b4687 Merge branch 'master' of https://github.com/williamFalcon/pytorch-lightning 2019-07-15 13:01:17 -04:00
William Falcon b4b8a3dfde fixed none bug 2019-07-15 13:01:08 -04:00
William Falcon d8782c7b90 Update README.md 2019-07-15 09:21:30 -04:00
William Falcon d5878e9a72 release v0.2.3 2019-07-14 18:15:15 -04:00
William Falcon ad24bef1c9 removed print statements 2019-07-14 18:12:41 -04:00
William Falcon 50246a5066 working on single gpu init speed 2019-07-14 17:33:48 -04:00
William Falcon 21914cb1c1 working on single gpu init speed 2019-07-14 17:15:20 -04:00
William Falcon 904935cf98 working on single gpu init speed 2019-07-14 17:11:52 -04:00
William Falcon 468e75c180 working on single gpu init speed 2019-07-14 17:10:13 -04:00
William Falcon 849f52b7a6 modified single gpu init 2019-07-14 17:01:18 -04:00
William Falcon e520297781 modified single gpu init 2019-07-14 16:57:15 -04:00
William Falcon cefc27112d ddp flag change 2019-07-13 22:28:08 -04:00
William Falcon 6876f60098 merge 2019-07-13 22:21:17 -04:00
William Falcon fc1653e337 Merge branch 'nccl' of https://github.com/williamFalcon/pytorch-lightning into nccl 2019-07-13 22:19:41 -04:00
William Falcon e9f5913dac enabling gpu size = 1 to run without data parallel 2019-07-13 22:16:10 -04:00
William Falcon 7da82c2560 added fallback local init 2019-07-13 22:16:10 -04:00
William Falcon a2639c6894 added fallback local init 2019-07-13 22:16:10 -04:00
William Falcon eb05fa316f added fallback local init 2019-07-13 22:16:10 -04:00
William Falcon 6d55adb0d8 fixed nccl init 2019-07-13 22:16:10 -04:00
William Falcon cff0500a63 fixed nccl init 2019-07-13 22:16:10 -04:00
William Falcon f3ca184fb6 fixed nccl init 2019-07-13 22:16:10 -04:00
William Falcon 3239c9fdf8 fixed nccl init 2019-07-13 22:16:10 -04:00
William Falcon 7e37f68a5b fixed nccl init 2019-07-13 22:16:10 -04:00
William Falcon 960937ebe9 fixed nccl init 2019-07-13 22:16:10 -04:00
William Falcon a87784b4c5 fixed nccl init 2019-07-13 22:16:10 -04:00
William Falcon 5812efcf24 fixed nccl init 2019-07-13 22:16:10 -04:00
William Falcon e82014ec6c fixed nccl init 2019-07-13 22:16:10 -04:00
William Falcon dc87a4fc91 fixed nccl init 2019-07-13 22:16:10 -04:00
William Falcon 4f5eef2e78 fixed nccl init 2019-07-13 22:16:10 -04:00
William Falcon 6c02afefca fixed nccl init 2019-07-13 22:16:10 -04:00
William Falcon 4696e12641 fixed nccl init 2019-07-13 22:16:10 -04:00
William Falcon 7c688fbf2e enabling gpu size = 1 to run without data parallel 2019-07-13 22:09:17 -04:00
William Falcon 9ccfc7bd33 added fallback local init 2019-07-13 22:03:36 -04:00
William Falcon 52a98d76d8 added fallback local init 2019-07-13 10:16:50 -04:00
William Falcon 8b0cda84e7 added fallback local init 2019-07-13 10:13:52 -04:00
William Falcon 9f41a9e8b7 fixed nccl init 2019-07-12 16:35:20 -04:00
William Falcon b7baa96186 fixed nccl init 2019-07-12 16:29:44 -04:00
William Falcon faa2d4fa8b fixed nccl init 2019-07-12 16:23:20 -04:00
William Falcon 4f5da45fae fixed nccl init 2019-07-12 16:17:50 -04:00
William Falcon 7e54ad3f7c fixed nccl init 2019-07-12 16:16:46 -04:00
William Falcon 3bf366bcd8 fixed nccl init 2019-07-12 16:08:23 -04:00
William Falcon 6219f24a03 fixed nccl init 2019-07-12 16:07:57 -04:00
William Falcon 0bd81db538 fixed nccl init 2019-07-12 16:05:46 -04:00
William Falcon c84700814d fixed nccl init 2019-07-12 16:03:17 -04:00
William Falcon c244599ae8 fixed nccl init 2019-07-12 15:59:33 -04:00
William Falcon d99b121379 fixed nccl init 2019-07-12 15:59:12 -04:00
William Falcon 91b869d043 fixed nccl init 2019-07-12 15:55:28 -04:00
William Falcon 08e1ab64b5 fixed nccl init 2019-07-12 15:53:45 -04:00
William Falcon c1b21fb1e4 Merge pull request #11 from cinjon/modulefix
trainer: module fix.
2019-07-12 15:28:48 -04:00
William Falcon 8451bb7745 fixed nccl init 2019-07-12 15:25:34 -04:00
William Falcon 1a1771cfd8 fixed nccl init 2019-07-12 15:24:42 -04:00
William Falcon 1952e9be49 fixed nccl init 2019-07-12 15:11:32 -04:00
William Falcon 19391b1df1 fixed nccl init 2019-07-12 15:04:20 -04:00
William Falcon 369174c4d3 fixed nccl init 2019-07-12 14:36:00 -04:00
William Falcon 5ba0a2ed48 fixed nccl init 2019-07-12 14:28:49 -04:00
William Falcon 88061b2284 Merge branch 'master' of https://github.com/williamFalcon/pytorch-lightning 2019-07-12 13:42:53 -04:00
William Falcon ba38037917 fixed nccl init 2019-07-12 13:39:58 -04:00
William Falcon a7bb731a1d testing env init 2019-07-12 13:19:10 -04:00
William Falcon 58531888e0 testing env init 2019-07-12 13:17:33 -04:00
William Falcon 56ac885f03 Merge pull request #12 from cinjon/commafix
root_module: fix comma splits.
2019-07-12 13:13:57 -04:00
William Falcon 5e033fd97a testing env init 2019-07-12 13:11:08 -04:00
William Falcon 5d14b97aa6 testing file init 2019-07-12 12:57:54 -04:00
William Falcon 0b0addbcbe testing file init 2019-07-12 12:56:44 -04:00
Cinjon Resnick 098d518398 trainer: module fix. 2019-07-12 12:54:35 -04:00
William Falcon ba111e681e testing file init 2019-07-12 12:41:54 -04:00
Cinjon Resnick 3de053c903 root_module: fix comma splits. 2019-07-12 12:38:39 -04:00
William Falcon ac1bd57b8b testing file init 2019-07-12 12:33:54 -04:00
William Falcon 3f0fab9160 reset master 2019-07-12 12:32:36 -04:00
William Falcon 24c13aadc0 testing file init 2019-07-12 12:06:19 -04:00
William Falcon 885bad3555 testing master_Addr flag 2019-07-12 11:55:14 -04:00
William Falcon 6dde1d7ae3 testing master_Addr flag 2019-07-12 11:43:05 -04:00
William Falcon c223960edb testing master_Addr flag 2019-07-12 11:30:57 -04:00
William Falcon 32646cf2ee release v0.2.2 2019-07-11 16:19:11 -04:00
William Falcon 415ee4903b simplify trainer output 2019-07-11 15:23:33 -04:00
William Falcon a21dc5a187 simplify trainer output 2019-07-11 15:15:22 -04:00
William Falcon 0929908229 simplify trainer output 2019-07-11 15:08:45 -04:00
William Falcon cc12a1c8fa added clarifying comments 2019-07-11 14:58:47 -04:00
William Falcon 91b3a0aac6 added clarifying comments 2019-07-11 14:57:26 -04:00
William Falcon ed35f4e076 updated amp use 2019-07-11 14:35:41 -04:00
William Falcon c4781cb415 Merge branch 'master' of https://github.com/williamFalcon/pytorch-lightning 2019-07-11 14:18:07 -04:00
William Falcon 730a06640b updated amp use 2019-07-11 14:17:43 -04:00
William Falcon 6eb25edb31 release v0.21 2019-07-09 19:56:11 -04:00
12 changed files with 499 additions and 102 deletions
+2 -2
View File
@@ -116,8 +116,8 @@ def validation_end(self, outputs):
return tqdm_dic
```
## TensorboardX
Lightning is fully integrated with tensorboardX.
## Tensorboard
Lightning is fully integrated with tensorboard.
<p align="center">
<a href="https://williamfalcon.github.io/pytorch-lightning/">
+1 -1
View File
@@ -19,7 +19,7 @@ Cut the learning rate by 10 at every epoch listed in this list.
trainer = Trainer(lr_scheduler_milestones=None)
# cut LR by 10 at 100, 200, and 300 epochs
trainer = Trainer(lr_scheduler_milestones=[100, 200, 300])
trainer = Trainer(lr_scheduler_milestones='100, 200, 300')
```
---
@@ -84,9 +84,10 @@ class LightningTemplateModel(LightningModule):
loss_val = self.loss(y, y_hat)
output = OrderedDict({
'loss': loss_val,
'tqdm_metrics': {}
'loss': loss_val
})
# can also return just a scalar instead of a dict (return loss_val)
return output
def validation_step(self, data_batch, batch_i):
@@ -107,8 +108,10 @@ class LightningTemplateModel(LightningModule):
output = OrderedDict({
'val_loss': loss_val,
'val_acc': torch.tensor(val_acc),
'val_acc': torch.tensor(val_acc).cuda(loss_val.device.index),
})
# can also return just a scalar instead of a dict (return loss_val)
return output
def validation_end(self, outputs):
@@ -117,6 +120,10 @@ class LightningTemplateModel(LightningModule):
:param outputs: list of individual outputs of each validation step
:return:
"""
# if returned a scalar from validation_step, outputs is a list of tensor scalars
# we return just the average in this case (if we want)
# return torch.stack(outputs).mean()
val_loss_mean = 0
val_acc_mean = 0
for output in outputs:
@@ -0,0 +1,112 @@
"""
Runs a model on a single node across N-gpus.
"""
import os
import sys
import numpy as np
from time import sleep
import torch
from test_tube import HyperOptArgumentParser, Experiment, SlurmCluster
from pytorch_lightning.models.trainer import Trainer
from pytorch_lightning.utils.arg_parse import add_default_args
from pytorch_lightning.callbacks import EarlyStopping, ModelCheckpoint
SEED = 2334
torch.manual_seed(SEED)
np.random.seed(SEED)
from lightning_module_template import LightningTemplateModel
def main(hparams):
"""
Main training routine specific for this project
:param hparams:
:return:
"""
# ------------------------
# 1 INIT LIGHTNING MODEL
# ------------------------
print('loading model...')
model = LightningTemplateModel(hparams)
print('model built')
# ------------------------
# 2 INIT TEST TUBE EXP
# ------------------------
# init experiment
exp = Experiment(
name=hyperparams.experiment_name,
save_dir=hyperparams.test_tube_save_path,
autosave=False,
description='test demo'
)
exp.argparse(hparams)
exp.save()
# ------------------------
# 3 DEFINE CALLBACKS
# ------------------------
model_save_path = '{}/{}/{}'.format(hparams.model_save_path, exp.name, exp.version)
early_stop = EarlyStopping(
monitor='val_acc',
patience=3,
verbose=True,
mode='max'
)
checkpoint = ModelCheckpoint(
filepath=model_save_path,
save_best_only=True,
verbose=True,
monitor='val_loss',
mode='min'
)
# ------------------------
# 4 INIT TRAINER
# ------------------------
trainer = Trainer(
experiment=exp,
checkpoint_callback=checkpoint,
early_stop_callback=early_stop,
gpus=hparams.gpus,
)
# ------------------------
# 5 START TRAINING
# ------------------------
trainer.fit(model)
if __name__ == '__main__':
# dirs
root_dir = os.path.dirname(os.path.realpath(__file__))
demo_log_dir = os.path.join(root_dir, 'pt_lightning_demo_logs')
checkpoint_dir = os.path.join(demo_log_dir, 'model_weights')
test_tube_dir = os.path.join(demo_log_dir, 'test_tube_data')
# although we user hyperOptParser, we are using it only as argparse right now
parent_parser = HyperOptArgumentParser(strategy='grid_search', add_help=False)
# gpu args
parent_parser.add_argument('--gpus', type=str, default='-1', help='how many gpus to use in the node. -1 uses all the gpus on the node')
parent_parser.add_argument('--test_tube_save_path', type=str, default=test_tube_dir, help='where to save logs')
parent_parser.add_argument('--model_save_path', type=str, default=checkpoint_dir, help='where to save model')
parent_parser.add_argument('--experiment_name', type=str, default='pt_lightning_exp_a', help='test tube exp name')
# allow model to overwrite or extend args
parser = LightningTemplateModel.add_model_specific_args(parent_parser, root_dir)
hyperparams = parser.parse_args()
# ---------------------
# RUN TRAINING
# ---------------------
# run on HPC cluster
print(f'RUNNING INTERACTIVE MODE ON GPUS. gpu ids: {hyperparams.gpus}')
main(hyperparams)
@@ -0,0 +1,112 @@
"""
Runs a model on a single node across N-gpus.
"""
import os
import sys
import numpy as np
from time import sleep
import torch
from test_tube import HyperOptArgumentParser, Experiment, SlurmCluster
from pytorch_lightning.models.trainer import Trainer
from pytorch_lightning.utils.arg_parse import add_default_args
from pytorch_lightning.callbacks import EarlyStopping, ModelCheckpoint
SEED = 2334
torch.manual_seed(SEED)
np.random.seed(SEED)
from lightning_module_template import LightningTemplateModel
def main(hparams):
"""
Main training routine specific for this project
:param hparams:
:return:
"""
# ------------------------
# 1 INIT LIGHTNING MODEL
# ------------------------
print('loading model...')
model = LightningTemplateModel(hparams)
print('model built')
# ------------------------
# 2 INIT TEST TUBE EXP
# ------------------------
# init experiment
exp = Experiment(
name=hyperparams.experiment_name,
save_dir=hyperparams.test_tube_save_path,
autosave=False,
description='test demo'
)
exp.argparse(hparams)
exp.save()
# ------------------------
# 3 DEFINE CALLBACKS
# ------------------------
model_save_path = '{}/{}/{}'.format(hparams.model_save_path, exp.name, exp.version)
early_stop = EarlyStopping(
monitor='val_acc',
patience=3,
verbose=True,
mode='max'
)
checkpoint = ModelCheckpoint(
filepath=model_save_path,
save_best_only=True,
verbose=True,
monitor='val_loss',
mode='min'
)
# ------------------------
# 4 INIT TRAINER
# ------------------------
trainer = Trainer(
experiment=exp,
checkpoint_callback=checkpoint,
early_stop_callback=early_stop,
gpus=hparams.gpus,
)
# ------------------------
# 5 START TRAINING
# ------------------------
trainer.fit(model)
if __name__ == '__main__':
# dirs
root_dir = os.path.dirname(os.path.realpath(__file__))
demo_log_dir = os.path.join(root_dir, 'pt_lightning_demo_logs')
checkpoint_dir = os.path.join(demo_log_dir, 'model_weights')
test_tube_dir = os.path.join(demo_log_dir, 'test_tube_data')
# although we user hyperOptParser, we are using it only as argparse right now
parent_parser = HyperOptArgumentParser(strategy='grid_search', add_help=False)
# gpu args
parent_parser.add_argument('--gpus', type=str, default='0', help='how many gpus to use in the node. -1 uses all the gpus on the node')
parent_parser.add_argument('--test_tube_save_path', type=str, default=test_tube_dir, help='where to save logs')
parent_parser.add_argument('--model_save_path', type=str, default=checkpoint_dir, help='where to save model')
parent_parser.add_argument('--experiment_name', type=str, default='pt_lightning_exp_a', help='test tube exp name')
# allow model to overwrite or extend args
parser = LightningTemplateModel.add_model_specific_args(parent_parser, root_dir)
hyperparams = parser.parse_args()
# ---------------------
# RUN TRAINING
# ---------------------
# run on HPC cluster
print(f'RUNNING INTERACTIVE MODE ON GPUS. gpu ids: {hyperparams.gpus}')
main(hyperparams)
+227 -88
View File
@@ -6,6 +6,7 @@ import subprocess
import traceback
import warnings
import os
import pdb
import torch
from torch.utils.data.distributed import DistributedSampler
@@ -17,7 +18,7 @@ import tqdm
from pytorch_lightning.root_module.memory import get_gpu_memory_map
from pytorch_lightning.root_module.model_saving import TrainerIO
from pytorch_lightning.pt_overrides.override_data_parallel import LightningDistributedDataParallel
from pytorch_lightning.pt_overrides.override_data_parallel import LightningDistributedDataParallel, LightningDataParallel
try:
@@ -27,11 +28,33 @@ except ModuleNotFoundError:
APEX_AVAILABLE = False
def reduce_distributed_output(output, nb_gpus):
if nb_gpus <= 1:
return output
# when using DP, we get one output per gpu
# average outputs and return
if type(output) is torch.Tensor:
return output.mean()
for k, v in output.items():
# recurse on nested dics
if isinstance(output[k], dict):
output[k] = reduce_distributed_output(output[k], nb_gpus)
# reduce only metrics that have the same nb of gpus
elif output[k].size(0) == nb_gpus:
reduced = torch.mean(output[k])
output[k] = reduced
return output
class Trainer(TrainerIO):
def __init__(self,
experiment,
checkpoint_callback, early_stop_callback,
early_stop_callback=None,
checkpoint_callback=None,
gradient_clip=0,
cluster=None,
process_position=0,
@@ -44,20 +67,57 @@ class Trainer(TrainerIO):
check_val_every_n_epoch=1,
fast_dev_run=False,
accumulate_grad_batches=1,
enable_early_stop=True, max_nb_epochs=1000, min_nb_epochs=1,
train_percent_check=1.0, val_percent_check=1.0, test_percent_check=1.0, val_check_interval=0.95,
max_nb_epochs=1000, min_nb_epochs=1,
train_percent_check=1.0, val_percent_check=1.0, test_percent_check=1.0,
val_check_interval=0.95,
log_save_interval=100, add_log_row_interval=10,
lr_scheduler_milestones=None,
distributed_backend='dp',
use_amp=False,
print_nan_grads=False,
print_weights_summary=True,
amp_level='O2',
nb_sanity_val_steps=5):
"""
:param experiment: Test-tube experiment
:param early_stop_callback: from pytorch_lightning import EarlyStopping
:param checkpoint_callback: from pytorch_lightning import Checkpoint
:param gradient_clip:
:param cluster:
:param process_position:
:param current_gpu_name:
:param nb_gpu_nodes:
:param gpus:
:param progress_bar:
:param overfit_pct:
:param track_grad_norm:
:param check_val_every_n_epoch:
:param fast_dev_run:
:param accumulate_grad_batches:
:param max_nb_epochs:
:param min_nb_epochs:
:param train_percent_check:
:param val_percent_check:
:param test_percent_check:
:param val_check_interval:
:param log_save_interval:
:param add_log_row_interval:
:param lr_scheduler_milestones:
:param distributed_backend: 'np' to use DistributedParallel, 'ddp' to use DistributedDataParallel
:param use_amp:
:param print_nan_grads:
:param print_weights_summary:
:param amp_level:
:param nb_sanity_val_steps:
"""
# Transfer params
self.nb_gpu_nodes = nb_gpu_nodes
self.gradient_clip = gradient_clip
self.check_val_every_n_epoch = check_val_every_n_epoch
self.enable_early_stop = enable_early_stop
self.enable_early_stop = early_stop_callback is not None
self.track_grad_norm = track_grad_norm
self.fast_dev_run = fast_dev_run
self.on_gpu = gpus is not None and torch.cuda.is_available()
@@ -67,8 +127,12 @@ class Trainer(TrainerIO):
self.cluster = cluster
self.process_position = process_position
self.current_gpu_name = current_gpu_name
self.print_weights_summary = print_weights_summary
self.checkpoint_callback = checkpoint_callback
self.checkpoint_callback.save_function = self.save_checkpoint
if self.checkpoint_callback is not None:
self.checkpoint_callback.save_function = self.save_checkpoint
self.early_stop = early_stop_callback
self.model = None
self.max_nb_epochs = max_nb_epochs
@@ -82,6 +146,8 @@ class Trainer(TrainerIO):
self.print_nan_grads = print_nan_grads
self.data_parallel_device_ids = None
self.world_size = 1
self.use_ddp = False
self.use_dp = False
# gpus come in as a string.
# if gpus = -1 then use all available devices
@@ -95,8 +161,14 @@ class Trainer(TrainerIO):
# set the correct cuda visible devices (using pci order)
os.environ["CUDA_DEVICE_ORDER"] = "PCI_BUS_ID"
os.environ["CUDA_VISIBLE_DEVICES"] = ','.join([str(x) for x in self.data_parallel_device_ids])
print(f'VISIBLE GPUS: {os.environ["CUDA_VISIBLE_DEVICES"]}')
self.data_parallel = self.data_parallel_device_ids is not None and len(self.data_parallel_device_ids) > 0
# make DP and DDP mutually exclusive
# single GPU will also use DP with devices=[0]
have_gpus = self.data_parallel_device_ids is not None and len(self.data_parallel_device_ids) > 0
if have_gpus:
self.use_dp = distributed_backend == 'dp'
self.use_ddp = distributed_backend == 'ddp'
# process info
self.proc_rank = 0
@@ -137,6 +209,10 @@ class Trainer(TrainerIO):
'''
warnings.warn(msg)
@property
def data_parallel(self):
return self.use_dp or self.use_ddp
def __determine_data_use_amount(self, train_percent_check, val_percent_check, test_percent_check, overfit_pct):
"""
Use less data for debugging purposes
@@ -149,8 +225,12 @@ class Trainer(TrainerIO):
self.val_percent_check = overfit_pct
self.test_percent_check = overfit_pct
def __get_model(self):
return self.model.module if self.data_parallel else self.model
def __is_function_implemented(self, f_name):
f_op = getattr(self.model, f_name, None)
model = self.__get_model()
f_op = getattr(model, f_name, None)
return callable(f_op)
@property
@@ -208,9 +288,6 @@ class Trainer(TrainerIO):
:param max_batches: Scalar
:return:
"""
if self.proc_rank == 0:
print('validating...')
# enable eval mode
model.zero_grad()
model.eval()
@@ -234,8 +311,12 @@ class Trainer(TrainerIO):
# -----------------
# RUN VALIDATION STEP
# -----------------
if self.data_parallel:
if self.use_ddp:
output = model(data_batch, batch_i)
elif self.use_dp:
output = model(data_batch, batch_i)
output = reduce_distributed_output(output, len(self.data_parallel_device_ids))
else:
output = model.validation_step(data_batch, batch_i)
@@ -269,7 +350,7 @@ class Trainer(TrainerIO):
self.test_dataloader = model.test_dataloader
self.val_dataloader = model.val_dataloader
if self.on_gpu and type(self.tng_dataloader.sampler) is not DistributedSampler:
if self.use_ddp and not isinstance(self.tng_dataloader.sampler, DistributedSampler):
msg = '''
when using multiple gpus and multiple nodes you must pass a DistributedSampler to DataLoader(sampler).
@@ -288,10 +369,59 @@ class Trainer(TrainerIO):
# MODEL TRAINING
# -----------------------------
def fit(self, model):
# when using multi-node or DDP within a node start each module in a separate process
if self.use_ddp:
# must copy only the meta of the exp so it survives pickle/unpickle when going to new process
self.experiment = self.experiment.get_meta_copy()
# whenever we have the correct number of tasks, we let slurm manage processes
# otherwise we launch the required number of processes
nb_slurm_tasks = int(os.environ['SLURM_NTASKS'])
nb_requested_gpus = len(self.data_parallel_device_ids)
is_slurm_managing_tasks = nb_slurm_tasks == nb_requested_gpus
if is_slurm_managing_tasks:
task = int(os.environ['SLURM_LOCALID'])
self.ddp_train(task, model)
else:
msg = f"""
You requested {nb_requested_gpus} GPUs but launched {nb_slurm_tasks} slurm tasks.
We will launch {nb_requested_gpus} processes for you.
We recommend you let slurm manage the processes by setting: --ntasks-per-node={nb_requested_gpus}
"""
warnings.warn(msg)
mp.spawn(self.ddp_train, nprocs=len(self.data_parallel_device_ids), args=(model, ))
# 1 gpu or dp option triggers training using DP module
# easier to avoid NCCL issues
elif self.use_dp:
self.dp_train(model)
# ON CPU
else:
# CHOOSE OPTIMIZER
# filter out the weights that were done on gpu so we can load on good old cpus
self.optimizers = model.configure_optimizers()
# run through amp wrapper
if self.use_amp:
# An example
model, optimizers = amp.initialize(
model, self.optimizers, opt_level=self.amp_level,
)
self.optimizers = optimizers
self.__run_pretrain_routine(model)
def dp_train(self, model):
# CHOOSE OPTIMIZER
# filter out the weights that were done on gpu so we can load on good old cpus
self.optimizers = model.configure_optimizers()
model.cuda(self.data_parallel_device_ids[0])
model = LightningDataParallel(model, device_ids=self.data_parallel_device_ids)
# run through amp wrapper
if self.use_amp:
# An example
@@ -300,15 +430,9 @@ class Trainer(TrainerIO):
)
self.optimizers = optimizers
# when using gpus, first thing we do is spawn a new process between each worker
# applies to single gpu, multi-gpu and multi-nodes
if self.on_gpu:
self.experiment = self.experiment.get_meta_copy()
mp.spawn(self.dp_train, nprocs=len(self.data_parallel_device_ids), args=(model, ))
else:
self.__run_pretrain_routine(model)
self.__run_pretrain_routine(model)
def dp_train(self, gpu_nb, model):
def ddp_train(self, gpu_nb, model):
"""
Entry point into a DP thread
:param gpu_nb:
@@ -324,6 +448,8 @@ class Trainer(TrainerIO):
node_rank = 0
# recover original exp before went into process
# init in write mode only on proc 0
self.experiment.debug = self.proc_rank > 0
self.experiment = self.experiment.get_non_ddp_exp()
# show progbar only on prog_rank 0
@@ -334,60 +460,56 @@ class Trainer(TrainerIO):
self.world_size = self.nb_gpu_nodes * len(self.data_parallel_device_ids)
# set up server using proc 0's ip address
ip = self.__get_root_node_ip(self.proc_rank, self.nb_gpu_nodes)
dist.init_process_group("nccl", init_method=f'tcp://{ip}:12001', rank=self.proc_rank, world_size=self.world_size)
# try to init for 20 times at max in case ports are taken
# where to store ip_table
self.__init_tcp_connection()
# CHOOSE OPTIMIZER
# filter out the weights that were done on gpu so we can load on good old cpus
self.optimizers = model.configure_optimizers()
# MODEL
# copy model to each gpu
torch.cuda.set_device(gpu_nb)
model.cuda(gpu_nb)
# AMP
# run through amp wrapper before going to distributed DP
if self.use_amp:
# An example
model, optimizers = amp.initialize(
model, self.optimizers, opt_level=self.amp_level,
)
self.optimizers = optimizers
model = LightningDistributedDataParallel(model, device_ids=[gpu_nb])
# continue training routine
self.__run_pretrain_routine(model)
def __get_root_node_ip(self, world_gpu_nb, nb_gpu_nodes):
def __init_tcp_connection(self):
"""
Resolves the ip address of proc 0.
Proc 0 writes address to a file. Every other process waits until the ip is available before it starts
:param world_gpu_nb: gpu number amongst all the world gpus
:param nb_gpu_nodes:
:param ip_file_dir:
Connect all procs in the world using the env:// init
Use the first node as the root address
:param port:
:param tries:
:return:
"""
# on one node we use localhost
if nb_gpu_nodes == 1:
return '127.0.0.1'
try:
port = os.environ['MASTER_PORT']
except Exception as e:
port = 12910
os.environ['MASTER_PORT'] = f'{port}'
# where to store ip_table
ip_file_dir = os.path.join(self.cluster.log_path, 'ip_tables')
try:
root_node = os.environ['SLURM_NODELIST'].split(' ')[0]
except Exception as e:
root_node = '127.0.0.2'
# the first gpu in the world becomes the host
# this is based on its global rank
# it communicates its ip by saving an ip_table to the slurm cluster logging dir
# every other process waits for this ip to appear before continuing
ip_table_name = f'.ip_meta_' + os.environ['SLURM_JOB_ID']
ip_file = os.path.join(ip_file_dir, ip_table_name)
os.makedirs(ip_file_dir, exist_ok=True)
os.environ['MASTER_ADDR'] = root_node
if world_gpu_nb == 0:
# get the proc 0 IP
root_ip = subprocess.run(['hostname', '-I'], stdout=subprocess.PIPE).stdout.decode('utf-8')
root_ip = root_ip.split(' ')[0]
# save the ip to the file
with open(file=ip_file, mode='w') as f:
f.write(root_ip)
return root_ip
else:
# wait up to 120 seconds until proc 0 writes
# once written, read proc 0's address and use it to configure server
for i in range(0, 120):
sleep(1.0)
if os.path.exists(ip_file):
ip = list(open(file=ip_file, mode='r'))[0]
return ip
sleep(self.proc_rank*0.5)
dist.init_process_group("nccl", rank=self.proc_rank, world_size=self.world_size)
def __run_pretrain_routine(self, model):
"""
@@ -396,7 +518,7 @@ class Trainer(TrainerIO):
:return:
"""
ref_model = model
if self.on_gpu:
if self.data_parallel:
ref_model = model.module
ref_model.trainer = self
@@ -417,7 +539,7 @@ class Trainer(TrainerIO):
self.lr_schedulers.append(scheduler)
# print model summary
if self.proc_rank == 0:
if self.proc_rank == 0 and self.print_weights_summary:
ref_model.summarize()
# give model convenience properties
@@ -448,12 +570,12 @@ class Trainer(TrainerIO):
for lr_scheduler in self.lr_schedulers:
lr_scheduler.step()
model = self.model.module if self.data_parallel else self.model
model = self.__get_model()
model.current_epoch = epoch_nb
# hook
if self.__is_function_implemented('on_epoch_start'):
model = self.model.module if self.data_parallel else self.model
model = self.__get_model()
model.on_epoch_start()
self.current_epoch = epoch_nb
@@ -468,7 +590,7 @@ class Trainer(TrainerIO):
self.batch_nb = batch_nb
self.global_step += 1
model = self.model.module if self.data_parallel else self.model
model = self.__get_model()
model.global_step = self.global_step
# stop when the flag is changed or we've gone past the amount requested in the batches
@@ -500,10 +622,8 @@ class Trainer(TrainerIO):
# count items in memory
# nb_params, nb_tensors = count_mem_items()
if self.data_parallel:
metrics = self.model.module.update_tng_log_metrics(self.__tng_tqdm_dic)
else:
metrics = self.model.update_tng_log_metrics(self.__tng_tqdm_dic)
model = self.__get_model()
metrics = model.update_tng_log_metrics(self.__tng_tqdm_dic)
# add gpu memory
if self.on_gpu:
@@ -512,11 +632,13 @@ class Trainer(TrainerIO):
# add norms
if self.track_grad_norm > 0:
model = self.model.module if self.data_parallel else self.model
model = self.__get_model()
grad_norm_dic = model.grad_norm(self.track_grad_norm)
metrics.update(grad_norm_dic)
if self.__is_function_implemented('on_tng_metrics'):
model.on_tng_metrics(metrics)
# log metrics
scalar_metrics = self.__metrics_to_scalars(metrics, blacklist=self.__log_vals_blacklist())
if self.proc_rank == 0:
@@ -525,7 +647,7 @@ class Trainer(TrainerIO):
# hook
if self.__is_function_implemented('on_batch_end'):
model = self.model.module if self.data_parallel else self.model
model = self.__get_model()
model.on_batch_end()
# end epoch early
@@ -534,13 +656,13 @@ class Trainer(TrainerIO):
# hook
if self.__is_function_implemented('on_epoch_end'):
model = self.model.module if self.data_parallel else self.model
model = self.__get_model()
model.on_epoch_end()
# early stopping
if self.enable_early_stop:
met_min_epochs = epoch_nb > self.min_nb_epochs
if self.enable_early_stop and met_min_epochs:
should_stop = self.early_stop_callback.on_epoch_end(epoch=epoch_nb, logs=self.__tng_tqdm_dic)
met_min_epochs = epoch_nb > self.min_nb_epochs
# stop training
stop = should_stop and met_min_epochs
@@ -563,7 +685,7 @@ class Trainer(TrainerIO):
def __log_vals_blacklist(self):
"""avoid logging some vals lightning uses to maintain state"""
blacklist = {'batch_nb', 'v_nb', 'epoch', 'gpu'}
blacklist = {'batch_nb', 'v_nb', 'gpu'}
return blacklist
def __run_tng_batch(self, data_batch, batch_nb):
@@ -572,8 +694,8 @@ class Trainer(TrainerIO):
# hook
if self.__is_function_implemented('on_batch_start'):
model = self.model.module if self.data_parallel else self.model
response = model.on_batch_start(data_batch)
model_ref = self.__get_model()
response = model_ref.on_batch_start(data_batch)
if response == -1:
return -1
@@ -583,13 +705,26 @@ class Trainer(TrainerIO):
# forward pass
# return a scalar value and a dic with tqdm metrics
if self.data_parallel:
if self.use_ddp:
output = self.model(data_batch, batch_nb)
elif self.use_dp:
output = self.model(data_batch, batch_nb)
output = reduce_distributed_output(output, len(self.data_parallel_device_ids))
else:
output = self.model.training_step(data_batch, batch_nb)
model_specific_tqdm_metrics_dic = output['tqdm_metrics']
loss = output['loss']
try:
model_specific_tqdm_metrics_dic = output['tqdm_metrics']
except Exception as e:
model_specific_tqdm_metrics_dic = {}
# if output dict doesn't have the keyword loss
# then assume the output=loss if scalar
try:
loss = output['loss']
except Exception as e:
if type(output) is torch.Tensor:
loss = output
self.__add_tqdm_metrics(model_specific_tqdm_metrics_dic)
@@ -603,10 +738,11 @@ class Trainer(TrainerIO):
loss.backward()
if self.print_nan_grads:
model = self.model.module if self.data_parallel else self.model
model = self.__get_model()
for param in model.parameters():
print(param.grad.float().sum())
# avoid memory leaks
self.batch_loss_value += loss.item()
# gradient update with accumulated gradients
@@ -614,7 +750,7 @@ class Trainer(TrainerIO):
# clip gradients
if self.gradient_clip > 0:
model = self.model.module if self.data_parallel else self.model
model = self.__get_model()
torch.nn.utils.clip_grad_norm(model.parameters(), self.gradient_clip)
# update gradients across all optimizers
@@ -640,7 +776,8 @@ class Trainer(TrainerIO):
# activate batch end hook
if self.__is_function_implemented('on_batch_end'):
self.model.on_batch_end()
model = self.__get_model()
model.on_batch_end()
return 0
@@ -655,7 +792,8 @@ class Trainer(TrainerIO):
try:
# hook
if self.__is_function_implemented('on_pre_performance_check'):
self.model.on_pre_performance_check()
model = self.__get_model()
model.on_pre_performance_check()
# use full val set on end of epoch
# use a small portion otherwise
@@ -669,7 +807,8 @@ class Trainer(TrainerIO):
# hook
if self.__is_function_implemented('on_post_performance_check'):
self.model.on_post_performance_check()
model = self.__get_model()
model.on_post_performance_check()
except Exception as e:
print(e)
@@ -681,6 +820,6 @@ class Trainer(TrainerIO):
self.prog_bar.set_postfix(**tqdm_metrics)
# model checkpointing
if self.proc_rank == 0:
if self.proc_rank == 0 and self.checkpoint_callback:
print('save callback...')
self.checkpoint_callback.on_epoch_end(epoch=self.current_epoch, logs=self.__tng_tqdm_dic)
self.checkpoint_callback.on_epoch_end(epoch=self.current_epoch, logs=self.__tng_tqdm_dic)
@@ -1,6 +1,7 @@
from torch.nn import DataParallel
from torch.nn.parallel import DistributedDataParallel
import itertools
from itertools import chain
import threading
import torch
@@ -42,6 +43,29 @@ class LightningDataParallel(DataParallel):
Override the forward call in lightning so it goes to training and validation step respectively
"""
def forward(self, *inputs, **kwargs):
if not self.device_ids:
return self.module(*inputs, **kwargs)
for t in chain(self.module.parameters(), self.module.buffers()):
if t.device != self.src_device_obj:
raise RuntimeError("module must have its parameters and buffers "
"on device {} (device_ids[0]) but found one of "
"them on device: {}".format(self.src_device_obj, t.device))
inputs, kwargs = self.scatter(inputs, kwargs, self.device_ids)
if len(self.device_ids) == 1:
# lightning
if self.module.training:
return self.module.training_step(*inputs[0], **kwargs[0])
else:
return self.module.validation_step(*inputs[0], **kwargs[0])
replicas = self.replicate(self.module, self.device_ids[:len(inputs)])
outputs = self.parallel_apply(replicas, inputs, kwargs)
return self.gather(outputs, self.output_device)
def parallel_apply(self, replicas, inputs, kwargs):
return parallel_apply(replicas, inputs, kwargs, self.device_ids[:len(replicas)])
+3
View File
@@ -19,3 +19,6 @@ class ModelHooks(torch.nn.Module):
def on_post_performance_check(self):
pass
def on_tng_metrics(self, metrics):
pass
@@ -2,7 +2,7 @@ import torch
import os
import re
import pdb
from pytorch_lightning.pt_overrides.override_data_parallel import LightningDistributedDataParallel
from pytorch_lightning.pt_overrides.override_data_parallel import LightningDistributedDataParallel, LightningDataParallel
class ModelIO(object):
@@ -66,7 +66,8 @@ class TrainerIO(object):
checkpoint['optimizer_states'] = optimizer_states
# request what to save from the model
model = self.model.module if type(self.model) is LightningDistributedDataParallel else self.model
is_dp_module = type(self.model) is LightningDistributedDataParallel or type(self.model) is LightningDataParallel
model = self.model.module if is_dp_module else self.model
checkpoint_dict = model.get_save_dict()
# merge trainer and model saving items
+2 -2
View File
@@ -78,7 +78,7 @@ class LightningModule(GradInformation, ModelIO, OptimizerConfig, ModelHooks):
:param logs:
:return:
"""
raise NotImplementedError
return logs
def loss(self, *args, **kwargs):
"""
@@ -129,7 +129,7 @@ class LightningModule(GradInformation, ModelIO, OptimizerConfig, ModelHooks):
def get_process_position(gpus):
try:
current_gpu = os.environ["CUDA_VISIBLE_DEVICES"]
gpu_ids = gpus.split(';')
gpu_ids = gpus.split(',')
process_position = gpu_ids.index(current_gpu)
return process_position, current_gpu
except Exception as e:
+1 -1
View File
@@ -1,4 +1,3 @@
from matplotlib import pyplot as plt
import numpy as np
np.seterr(divide='ignore', invalid='ignore')
@@ -13,6 +12,7 @@ def plot_confusion_matrix(cm,
This function prints and plots the confusion matrix.
Normalization can be applied by setting `normalize=True`.
"""
from matplotlib import pyplot as plt
if normalize:
cm = cm.astype('float') / cm.sum(axis=1)[:, np.newaxis]
print("Normalized confusion matrix")
+2 -3
View File
@@ -7,7 +7,7 @@ from setuptools import setup, find_packages
# http://blog.ionelmc.ro/2014/05/25/python-packaging/
setup(
name="pytorch-lightning",
version='0.2',
version='0.2.5.1',
description="The Keras for ML researchers using PyTorch",
author="William Falcon",
author_email="waf2107@columbia.edu",
@@ -19,8 +19,7 @@ setup(
install_requires=[
"torch>=1.1.0",
"tqdm",
"test-tube>=0.653",
"tensorflow>=1.14.0"
"test-tube>=0.6.7.1",
],
packages=find_packages(),
long_description=open("README.md", encoding="utf-8").read(),