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William Falcon 592fb4e5ba release v0.3.6.2 2019-07-26 23:08:51 -04:00
75 changed files with 1341 additions and 3572 deletions
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# see https://docs.codecov.io/docs/codecov-yaml
# Validation check:
# $ curl --data-binary @.codecov.yml https://codecov.io/validate
codecov:
notify:
require_ci_to_pass: yes
coverage:
precision: 0 # 2 = xx.xx%, 0 = xx%
round: nearest # how coverage is rounded: down/up/nearest
range: 40...100 # custom range of coverage colors from red -> yellow -> green
status:
# https://codecov.readme.io/v1.0/docs/commit-status
project:
default:
against: auto
target: 99% # specify the target coverage for each commit status
threshold: 20% # allow this little decrease on project
# https://github.com/codecov/support/wiki/Filtering-Branches
# branches: master
if_ci_failed: error
# https://github.com/codecov/support/wiki/Patch-Status
patch:
default:
against: auto
target: 40% # specify the target "X%" coverage to hit
# threshold: 50% # allow this much decrease on patch
changes: false
parsers:
gcov:
branch_detection:
conditional: true
loop: true
macro: false
method: false
javascript:
enable_partials: false
comment:
layout: header, diff
require_changes: false
behavior: default # update if exists else create new
# branches: *
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---
name: Bug report
about: Create a report to help us improve
title: ''
labels: bug
assignees: ''
---
### Common bugs:
1. Tensorboard not showing in Jupyter-notebook see [issue 79](https://github.com/williamFalcon/pytorch-lightning/issues/79).
2. PyTorch 1.1.0 vs 1.2.0 support [see FAQ](https://github.com/williamFalcon/pytorch-lightning#faq)
**Describe the bug**
A clear and concise description of what the bug is.
**To Reproduce**
Steps to reproduce the behavior:
1. Go to '...'
2. Click on '....'
3. Scroll down to '....'
4. See error
**Expected behavior**
A clear and concise description of what you expected to happen.
**Screenshots**
If applicable, add screenshots to help explain your problem.
**Desktop (please complete the following information):**
- OS: [e.g. iOS]
- Browser [e.g. chrome, safari]
- Version [e.g. 22]
**Additional context**
Add any other context about the problem here.
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---
name: Feature request
about: Suggest an idea for this project
title: ''
labels: enhancement, help wanted
assignees: ''
---
**Is your feature request related to a problem? Please describe.**
A clear and concise description of what the problem is. Ex. I'm always frustrated when [...]
**Describe the solution you'd like**
A clear and concise description of what you want to happen.
**Describe alternatives you've considered**
A clear and concise description of any alternative solutions or features you've considered.
**Additional context**
Add any other context or screenshots about the feature request here.
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---
name: How to question
about: Asking how-to questions
title: ''
labels: question
assignees: ''
---
### Before asking:
1. search the issues.
2. search the docs.
If you still can't find what you need:
#### What is your question?
#### Code
Please paste a code snippet if your question requires it!
#### What have you tried?
#### What's your environment?
- conda version (no venv)
- PyTorch version
- Lightning version
- Test-tube version
@@ -1,17 +0,0 @@
---
name: Typos and doc fixes
about: Typos and doc fixes
title: ''
labels: typo
assignees: ''
---
For typos and doc fixes, please go ahead and:
1. Create an issue.
2. Fix the typo.
3. Submit a PR.
Thanks!
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pip-wheel-metadata/
test_tube_exp/
tests/tests_tt_dir/
tests/save_dir
default/
# Byte-compiled / optimized / DLL files
__pycache__/
+1 -1
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python:
version: 3.7
install:
- requirements: docs/requirements.txt
- requirements: docs/doc_requirements.txt
+10 -40
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@@ -1,46 +1,16 @@
# vim ft=yaml
# After changing this file, check it on:
# http://yaml-online-parser.appspot.com/
# See doc/travis_notes.txt for some guidelines
# this file is *not* meant to cover or endorse the use of travis, but rather to
# help confirm pull requests to this project.
dist: xenial # Ubuntu 16.04
env:
global:
- DISPLAY=""
language: python
matrix:
include:
- python: 3.6
env: TOXENV=py36
- python: 3.7
env: TOXENV=py37
# See http://docs.travis-ci.com/user/caching/#pip-cache
python:
- "3.7"
# command to install dependencies
cache: pip
install:
- pip install -e .
- pip install -r requirements.txt
- pip install -r ./tests/requirements.txt
- pip --version ; pip list
- pip install -U numpy
# keep build from timing out
dist: xenial
# command to run tests
script:
# integration
- tox --sitepackages
- python setup.py install --dry-run
after_success:
- coverage report
# disable auto coverage bc it isn't accurate since it misses gpu code.
# to get coverage, run local and push results
# - codecov
notifications:
email: false
- py.test # or py.test for Python versions 3.5 and below
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# Contributor Covenant Code of Conduct
## Our Pledge
In the interest of fostering an open and welcoming environment, we as
contributors and maintainers pledge to making participation in our project and
our community a harassment-free experience for everyone, regardless of age, body
size, disability, ethnicity, sex characteristics, gender identity and expression,
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appearance, race, religion, or sexual identity and orientation.
## Our Standards
Examples of behavior that contributes to creating a positive environment
include:
* Using welcoming and inclusive language
* Being respectful of differing viewpoints and experiences
* Gracefully accepting constructive criticism
* Focusing on what is best for the community
* Showing empathy towards other community members
Examples of unacceptable behavior by participants include:
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* Other conduct which could reasonably be considered inappropriate in a
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Project maintainers are responsible for clarifying the standards of acceptable
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Project maintainers have the right and responsibility to remove, edit, or
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permanently any contributor for other behaviors that they deem inappropriate,
threatening, offensive, or harmful.
## Scope
This Code of Conduct applies both within project spaces and in public spaces
when an individual is representing the project or its community. Examples of
representing a project or community include using an official project e-mail
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## Enforcement
Instances of abusive, harassing, or otherwise unacceptable behavior may be
reported by contacting the project team at waf2107@columbia.edu. All
complaints will be reviewed and investigated and will result in a response that
is deemed necessary and appropriate to the circumstances. The project team is
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Further details of specific enforcement policies may be posted separately.
Project maintainers who do not follow or enforce the Code of Conduct in good
faith may face temporary or permanent repercussions as determined by other
members of the project's leadership.
## Attribution
This Code of Conduct is adapted from the [Contributor Covenant][homepage], version 1.4,
available at https://www.contributor-covenant.org/version/1/4/code-of-conduct.html
[homepage]: https://www.contributor-covenant.org
For answers to common questions about this code of conduct, see
https://www.contributor-covenant.org/faq
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# Contributing
Welcome to the PyTorch Lightning community! We're building the most advanced research platform on the planet to implement the latest, best practices that the amazing PyTorch team rolls out!
## One less thing to remember
Simplify the API as much as possible from the user perspective. Any additions or improvements should minimize things the user needs to remember.
For example: One benefit of the validation_step is that the user doesn't have to remember to set the model to .eval(). This avoids all sorts of subtle errors the user could make.
## Lightning Design Principles
We encourage all sorts of contributions you're interested in adding! When coding for lightning, please follow these principles.
#### No PyTorch interference
We don't want to add any abstractions on top of pure PyTorch. This gives researchers all the control they need without having to learn yet another framework.
#### Simple Internal Code
It's useful for users to look at the code and understand very quickly what's happening. Many users won't be engineers. Thus we need to value clear, simple code over condensed ninja moves. While that's super cool, this isn't the project for that :)
#### Force User Decisions To Best Practices
There are 1,000 ways to do something. However, something eventually becomes standard practice that everyone does. Thus we pick one way of doing it and force everyone to do it this way. A good example is accumulated gradients. There are many ways to implement, we just pick one and force users to use that one. A bad forced decision would be to make users use a specific library to do something.
When something becomes a best practice, we add it to the framework. This likely looks like code in utils or in the model file that everyone keeps adding over and over again across projects. When this happens, bring that code inside the trainer and add a flag for it.
#### Simple External API
What makes sense to you may not make sense to others. Create an issue with an API change suggestion and validate that it makes sense for others. Treat code changes how you treat a startup: validate that it's a needed feature, then add if it makes sense for many people.
#### Gain User Trust
As a researcher you can't have any part of your code going wrong. So, make thorough tests that ensure an implementation of a new trick or subbtle change is correct.
## Contribution types
Currently looking for help implementing new features or adding bug fixes.
A lot of good work has already been done in project mechanics (requirements.txt, setup.py, pep8, badges, ci, etc...) we're in a good state there thanks to all the early contributors (even pre-beta release)!
## Bug fixes:
1. Submit a github issue.
2. Fix it.
3. Submit a PR!
## New Features:
1. Submit a github issue.
2. We'll agree on the feature scope.
3. Submit a PR! (with updated docs and tests 🙃).
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MIT License
Copyright (c) 2019 William Falcon
Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and associated documentation files (the "Software"), to deal
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THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
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AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
SOFTWARE.
-201
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+6 -34
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@@ -1,37 +1,9 @@
# Manifest syntax https://docs.python.org/2/distutils/sourcedist.html
graft wheelhouse
graft docs
recursive-include birl *.py
recursive-exclude __pycache__ *.py[cod] *.orig
include COPYING
include AUTHORS
# Include the README
include *.md
recursive-include src/einsteinpy/tests *.py *.html
# Include the license file
include LICENSE
exclude *.sh
exclude *.toml
exclude *.svg
recursive-include examples *.py
recursive-include pytorch_lightning *.py
# exclude tests from package
recursive-exclude tests *
exclude tests
# Exclude the documentation files
recursive-exclude docs *
exclude docs
# Include the Requirements
include requirements.txt
# Exclude build configs
exclude *.yml
prune .git
prune .github
prune notebook*
prune temp*
prune test*
prune docs/source/examples/.ipynb_checkpoints
global-exclude *.py[cod] __pycache__ *.so *.dylib
+72 -182
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@@ -1,30 +1,24 @@
<div align="center">
<p align="center">
<a href="https://williamfalcon.github.io/pytorch-lightning/">
<img alt="" src="https://github.com/williamFalcon/pytorch-lightning/blob/master/docs/source/_static/lightning_logo.png" width="50">
</a>
</p>
<h3 align="center">
Pytorch Lightning
</h3>
<p align="center">
The Keras for ML researchers using PyTorch. More control. Less boilerplate.
</p>
![Logo](./docs/source/_static/lightning_logo_small.png)
<p align="center">
<a href="https://badge.fury.io/py/pytorch-lightning"><img src="https://badge.fury.io/py/pytorch-lightning.svg" alt="PyPI version" height="18"></a>
<a href="https://pepy.tech/project/pytorch-lightning"><img src="https://pepy.tech/badge/pytorch-lightning" alt="PyPI version" height="18"></a>
<a href="https://github.com/williamFalcon/pytorch-lightning/tree/master/tests"><img src="https://github.com/williamFalcon/pytorch-lightning/blob/master/coverage.svg"></a>
<a href="https://travis-ci.org/williamFalcon/pytorch-lightning"><img src="https://travis-ci.org/williamFalcon/pytorch-lightning.svg?branch=master"></a>
<a href="https://williamfalcon.github.io/pytorch-lightning/"><img src="https://readthedocs.org/projects/pytorch-lightning/badge/?version=latest"></a>
<a href="https://github.com/williamFalcon/pytorch-lightning/blob/master/COPYING"><img src="https://img.shields.io/badge/License-MIT-yellow.svg"></a>
</p>
# PyTorch Lightning
**The PyTorch Keras for ML researchers. More control. Less boilerplate.**
[![PyPI Status](https://badge.fury.io/py/pytorch-lightning.svg)](https://badge.fury.io/py/pytorch-lightning)
[![PyPI Status](https://pepy.tech/badge/pytorch-lightning)](https://pepy.tech/project/pytorch-lightning)
[![Build Status](https://travis-ci.org/williamFalcon/pytorch-lightning.svg?branch=master)](https://travis-ci.org/williamFalcon/pytorch-lightning)
[![Build status](https://ci.appveyor.com/api/projects/status/rum89d7hq8l1kfye?svg=true)](https://ci.appveyor.com/project/Borda/pytorch-lightning)
[![Coverage](https://github.com/williamFalcon/pytorch-lightning/blob/master/docs/source/_static/coverage.svg)](https://github.com/williamFalcon/pytorch-lightning/tree/master/tests#running-coverage)
[![CodeFactor](https://www.codefactor.io/repository/github/borda/pytorch-lightning/badge)](https://www.codefactor.io/repository/github/borda/pytorch-lightning)
[![ReadTheDocs](https://readthedocs.org/projects/pytorch-lightning/badge/?version=latest)](https://pytorch-lightning.readthedocs.io/en/latest)
[![Gitter](https://badges.gitter.im/PyTorch-Lightning/community.svg)](https://gitter.im/PyTorch-Lightning/community?utm_source=badge&utm_medium=badge&utm_campaign=pr-badge)
[![license](https://img.shields.io/badge/License-Apache%202.0-blue.svg)](https://github.com/williamFalcon/pytorch-lightning/blob/master/LICENSE)
<!--
removed until codecov badge isn't empy. likely a config error showing nothing on master.
[![codecov](https://codecov.io/gh/Borda/pytorch-lightning/branch/master/graph/badge.svg)](https://codecov.io/gh/Borda/pytorch-lightning)
-->
</div>
Simple installation from PyPI
```bash
pip install pytorch-lightning
```
@@ -33,140 +27,91 @@ pip install pytorch-lightning
**[View the docs here](https://williamfalcon.github.io/pytorch-lightning/)**
## What is it?
Lightning is a very lightweight wrapper on PyTorch. This means you don't have to learn a new library. To use Lightning, simply refactor your research code into the [LightningModule](https://github.com/williamFalcon/pytorch-lightning#how-do-i-do-use-it) format and Lightning will automate the rest. Lightning guarantees tested, correct, modern best practices for the automated parts.
Lightning defers training and validation loop logic to you. It guarantees correct, modern best practices for the core training logic.
## Starting a new project?
[Use our seed-project aimed at reproducibility!](https://github.com/williamFalcon/pytorch-lightning-conference-seed)
## Why do I want to use lightning?
Every research project starts the same, a model, a training loop, validation loop, etc. As your research advances, you're likely to need distributed training, 16-bit precision, checkpointing, gradient accumulation, etc.
When starting a new project the last thing you want to do is recode a training loop, model loading/saving, distributed training, when to validate, etc... You're likely to spend a long time ironing out all the bugs without even getting to the core of your research.
Lightning sets up all the boilerplate state-of-the-art training for you so you can focus on the research.
With lightning, you guarantee those parts of your code work so you can focus on what the meat of the research: Data and training, validation loop logic. Don't worry about multiple gpus or speeding up your code, lightning will do that for you!
---
## README Table of Contents
- [How do I use it](https://github.com/williamFalcon/pytorch-lightning#how-do-i-do-use-it)
- [What lightning automates](https://github.com/williamFalcon/pytorch-lightning#what-does-lightning-control-for-me)
- [Tensorboard integration](https://github.com/williamFalcon/pytorch-lightning#tensorboard)
- [Lightning features](https://github.com/williamFalcon/pytorch-lightning#lightning-automates-all-of-the-following-each-is-also-configurable)
- [Demos](https://github.com/williamFalcon/pytorch-lightning#demo)
- [Tutorials](https://github.com/williamFalcon/pytorch-lightning#tutorials)
- [Contributing](https://github.com/williamFalcon/pytorch-lightning/blob/master/CONTRIBUTING.md)
- [Bleeding edge install](https://github.com/williamFalcon/pytorch-lightning#bleeding-edge)
- [Lightning Design Principles](https://github.com/williamFalcon/pytorch-lightning#lightning-design-principles)
- [Asking for help](https://github.com/williamFalcon/pytorch-lightning#asking-for-help)
- [FAQ](https://github.com/williamFalcon/pytorch-lightning#faq)
---
## How do I do use it?
Think about Lightning as refactoring your research code instead of using a new framework. The research code goes into a [LightningModule]((https://williamfalcon.github.io/pytorch-lightning/LightningModule/RequiredTrainerInterface/)) which you fit using a Trainer.
The LightningModule defines a *system* such as seq-2-seq, GAN, etc... It can ALSO define a simple classifier such as the example below.
To use lightning do 2 things:
1. [Define a LightningModule](https://williamfalcon.github.io/pytorch-lightning/LightningModule/RequiredTrainerInterface/)
1. [Define a LightningModel](https://williamfalcon.github.io/pytorch-lightning/LightningModule/RequiredTrainerInterface/)
```python
import os
import pytorch_lightning as ptl
import torch
from torch.nn import functional as F
from torch.utils.data import DataLoader
from torchvision.datasets import MNIST
import torchvision.transforms as transforms
import pytorch_lightning as pl
class CoolModel(ptl.LightningModule):
class CoolSystem(pl.LightningModule):
def __init__(self):
super(CoolSystem, self).__init__()
def __init(self):
super(CoolModel, self).__init__()
# not the best model...
self.l1 = torch.nn.Linear(28 * 28, 10)
def forward(self, x):
return torch.relu(self.l1(x.view(x.size(0), -1)))
return torch.relu(self.l1(x))
def my_loss(self, y_hat, y):
return F.cross_entropy(y_hat, y)
def training_step(self, batch, batch_nb):
# REQUIRED
x, y = batch
y_hat = self.forward(x)
return {'loss': F.cross_entropy(y_hat, y)}
return {'tng_loss': self.my_loss(y_hat, y)}
def validation_step(self, batch, batch_nb):
# OPTIONAL
x, y = batch
y_hat = self.forward(x)
return {'val_loss': F.cross_entropy(y_hat, y)}
return {'val_loss': self.my_loss(y_hat, y)}
def validation_end(self, outputs):
# OPTIONAL
avg_loss = torch.stack([x['val_loss'] for x in outputs]).mean()
return {'avg_val_loss': avg_loss}
avg_loss = torch.stack([x for x in outputs['val_loss']]).mean()
return avg_loss
def configure_optimizers(self):
# REQUIRED
# can return multiple optimizers and learning_rate schedulers
return torch.optim.Adam(self.parameters(), lr=0.02)
return [torch.optim.Adam(self.parameters(), lr=0.02)]
@pl.data_loader
@ptl.data_loader
def tng_dataloader(self):
# REQUIRED
return DataLoader(MNIST(os.getcwd(), train=True, download=True, transform=transforms.ToTensor()), batch_size=32)
return DataLoader(MNIST('path/to/save', train=True), batch_size=32)
@pl.data_loader
@ptl.data_loader
def val_dataloader(self):
# OPTIONAL
return DataLoader(MNIST(os.getcwd(), train=True, download=True, transform=transforms.ToTensor()), batch_size=32)
return DataLoader(MNIST('path/to/save', train=False), batch_size=32)
@pl.data_loader
@ptl.data_loader
def test_dataloader(self):
# OPTIONAL
return DataLoader(MNIST(os.getcwd(), train=True, download=True, transform=transforms.ToTensor()), batch_size=32)
return DataLoader(MNIST('path/to/save', train=False), batch_size=32)
```
2. Fit with a [trainer](https://williamfalcon.github.io/pytorch-lightning/Trainer/)
```python
from pytorch_lightning import Trainer
from test_tube import Experiment
model = CoolSystem()
model = CoolModel()
# most basic trainer, uses good defaults
trainer = Trainer()
trainer.fit(model)
```
# fit on 32 gpus across 4 nodes
exp = Experiment(save_dir='some/dir')
trainer = Trainer(experiment=exp, nb_gpu_nodes=4, gpus=[0,1,2,3,4,5,6,7])
Or with tensorboard logger and some options turned on such as multi-gpu, etc...
```python
from test_tube import Experiment
# PyTorch summarywriter with a few bells and whistles
exp = Experiment(save_dir=os.getcwd())
# train on cpu using only 10% of the data (for demo purposes)
# pass in experiment for automatic tensorboard logging.
trainer = Trainer(experiment=exp, max_nb_epochs=1, train_percent_check=0.1)
# train on 4 gpus
# trainer = Trainer(experiment=exp, max_nb_epochs=1, gpus=[0, 1, 2, 3])
# train on 32 gpus across 4 nodes (make sure to submit appropriate SLURM job)
# trainer = Trainer(experiment=exp, max_nb_epochs=1, gpus=[0, 1, 2, 3, 4, 5, 6, 7], nb_gpu_nodes=4)
# train (1 epoch only here for demo)
trainer.fit(model)
# view tensorflow logs
print('View tensorboard logs by running\ntensorboard --logdir %s' % os.getcwd())
print('and going to http://localhost:6006 on your browser')
```
# see all experiment metrics here
# tensorboard --log_dir some/dir
```
## What does lightning control for me?
Everything in gray!
You define the blue parts using the LightningModule interface:
## What does lightning control for me?
Everything!
Except for these 6 core functions which you define:
![Ouverview](./docs/source/_static/overview_flat.jpg)
```python
```{.python}
# what to do in the training loop
def training_step(self, data_batch, batch_nb):
@@ -192,7 +137,7 @@ def training_step(self, data_batch, batch_nb):
# define your own forward and loss calculation
hidden_states = self.encoder(x)
# even as complex as a seq-2-seq + attn model
# even as complex as a seq-2seq + attn model
# (this is just a toy, non-working example to illustrate)
start_token = '<SOS>'
last_hidden = torch.zeros(...)
@@ -246,14 +191,22 @@ def validation_end(self, outputs):
## Tensorboard
Lightning is fully integrated with tensorboard.
![tensorboard-support](./docs/source/_static/tf_loss.png)
<p align="center">
<a href="https://williamfalcon.github.io/pytorch-lightning/">
<img alt="" src="https://github.com/williamFalcon/pytorch-lightning/blob/master/docs/source/_static/tf_loss.png" width="900px">
</a>
</p>
Lightning also adds a text column with all the hyperparameters for this experiment.
![tensorboard-support](./docs/source/_static/tf_tags.png)
<p align="center">
<a href="https://williamfalcon.github.io/pytorch-lightning/">
<img alt="" src="https://github.com/williamFalcon/pytorch-lightning/blob/master/docs/source/_static/tf_tags.png" width="900px">
</a>
</p>
Simply note the path you set for the Experiment
```python
``` {.python}
from test_tube import Experiment
from pytorch-lightning import Trainer
@@ -269,12 +222,10 @@ tensorboard --logdir /some/path
## Lightning automates all of the following ([each is also configurable](https://williamfalcon.github.io/pytorch-lightning/Trainer/)):
###### Checkpointing
- [Model saving](https://williamfalcon.github.io/pytorch-lightning/Trainer/Checkpointing/#model-saving)
- [Model loading](https://williamfalcon.github.io/pytorch-lightning/LightningModule/methods/#load-from-metrics)
- [Restoring training session](https://williamfalcon.github.io/pytorch-lightning/Trainer/Checkpointing/#restoring-training-session)
###### Computing cluster (SLURM)
@@ -288,8 +239,7 @@ tensorboard --logdir /some/path
- [Log GPU usage](https://williamfalcon.github.io/pytorch-lightning/Trainer/debugging/#Log-gpu-usage)
- [Make model overfit on subset of data](https://williamfalcon.github.io/pytorch-lightning/Trainer/debugging/#make-model-overfit-on-subset-of-data)
- [Print the parameter count by layer](https://williamfalcon.github.io/pytorch-lightning/Trainer/debugging/#print-the-parameter-count-by-layer)
- [Print which gradients are nan](https://williamfalcon.github.io/pytorch-lightning/Trainer/debugging/#print-which-gradients-are-nan)
- [Print input and output size of every module in system](https://williamfalcon.github.io/pytorch-lightning/LightningModule/properties/#example_input_array)
- [Pring which gradients are nan](https://williamfalcon.github.io/pytorch-lightning/Trainer/debugging/#print-which-gradients-are-nan)
###### Distributed training
@@ -304,9 +254,9 @@ tensorboard --logdir /some/path
###### Experiment Logging
- [Display metrics in progress bar](https://williamfalcon.github.io/pytorch-lightning/Trainer/Logging/#display-metrics-in-progress-bar)
- Log arbitrary metrics
- [Log metric row every k batches](https://williamfalcon.github.io/pytorch-lightning/Trainer/Logging/#log-metric-row-every-k-batches)
- [Process position](https://williamfalcon.github.io/pytorch-lightning/Trainer/Logging/#process-position)
- [Tensorboard support](https://williamfalcon.github.io/pytorch-lightning/Trainer/Logging/#tensorboard-support)
- [Save a snapshot of all hyperparameters](https://williamfalcon.github.io/pytorch-lightning/Trainer/Logging/#save-a-snapshot-of-all-hyperparameters)
- [Snapshot code for a training run](https://williamfalcon.github.io/pytorch-lightning/Trainer/Logging/#snapshot-code-for-a-training-run)
- [Write logs file to csv every k batches](https://williamfalcon.github.io/pytorch-lightning/Trainer/Logging/#write-logs-file-to-csv-every-k-batches)
@@ -314,19 +264,16 @@ tensorboard --logdir /some/path
###### Training loop
- [Accumulate gradients](https://williamfalcon.github.io/pytorch-lightning/Trainer/Training%20Loop/#accumulated-gradients)
- [Anneal Learning rate](https://williamfalcon.github.io/pytorch-lightning/Trainer/Training%20Loop/#anneal-learning-rate)
- [Force training for min or max epochs](https://williamfalcon.github.io/pytorch-lightning/Trainer/Training%20Loop/#force-training-for-min-or-max-epochs)
- [Force disable early stop](https://williamfalcon.github.io/pytorch-lightning/Trainer/Training%20Loop/#force-disable-early-stop)
- [Gradient Clipping](https://williamfalcon.github.io/pytorch-lightning/Trainer/Training%20Loop/#gradient-clipping)
- [Hooks](https://williamfalcon.github.io/pytorch-lightning/Trainer/hooks/)
- [Learning rate scheduling](https://williamfalcon.github.io/pytorch-lightning/LightningModule/RequiredTrainerInterface/#configure_optimizers)
- [Use multiple optimizers (like GANs)](https://williamfalcon.github.io/pytorch-lightning/LightningModule/RequiredTrainerInterface/#configure_optimizers)
- [Use multiple optimizers (like GANs)](https://williamfalcon.github.io/pytorch-lightning/Pytorch-Lightning/LightningModule/#configure_optimizers)
- [Set how much of the training set to check (1-100%)](https://williamfalcon.github.io/pytorch-lightning/Trainer/Training%20Loop/#set-how-much-of-the-training-set-to-check)
- [Step optimizers at arbitrary intervals](https://williamfalcon.github.io/pytorch-lightning/Trainer/hooks/#optimizer_step)
###### Validation loop
- [Check validation every n epochs](https://williamfalcon.github.io/pytorch-lightning/Trainer/Validation%20loop/#check-validation-every-n-epochs)
- [Hooks](https://williamfalcon.github.io/pytorch-lightning/Trainer/hooks/)
- [Set how much of the validation set to check](https://williamfalcon.github.io/pytorch-lightning/Trainer/Validation%20loop/#set-how-much-of-the-validation-set-to-check)
- [Set how much of the test set to check](https://williamfalcon.github.io/pytorch-lightning/Trainer/Validation%20loop/#set-how-much-of-the-test-set-to-check)
- [Set validation check frequency within 1 training epoch](https://williamfalcon.github.io/pytorch-lightning/Trainer/Validation%20loop/#set-validation-check-frequency-within-1-training-epoch)
@@ -340,8 +287,7 @@ pip install pytorch-lightning
# clone lightning for the demo
git clone https://github.com/williamFalcon/pytorch-lightning.git
cd pytorch-lightning
cd examples/new_project_templates/
cd pytorch_lightning/examples/new_project_templates/
# all of the following demos use the SAME model to show no modification needs to be made to your code
@@ -355,64 +301,8 @@ python single_gpu_node_template.py --gpus "0,1"
python multi_node_cluster_template.py --nb_gpu_nodes 4 --gpus '0,1,2,3,4,5,6,7'
```
## Tutorials
- [Basic Lightning use](https://towardsdatascience.com/supercharge-your-ai-research-with-pytorch-lightning-337948a99eec)
- [9 key speed features in Pytorch-Lightning](https://towardsdatascience.com/9-tips-for-training-lightning-fast-neural-networks-in-pytorch-8e63a502f565)
- [SLURM, multi-node training with Lightning](https://towardsdatascience.com/trivial-multi-node-training-with-pytorch-lightning-ff75dfb809bd)
---
## Asking for help
Welcome to the Lightning community!
If you have any questions, feel free to:
1. [read the docs](https://williamfalcon.github.io/pytorch-lightning/).
2. [Search through the issues](https://github.com/williamFalcon/pytorch-lightning/issues?utf8=%E2%9C%93&q=my++question).
3. [Ask on stackoverflow](https://stackoverflow.com/questions/ask?guided=false) with the tag pytorch-lightning.
If no one replies to you quickly enough, feel free to post the stackoverflow link to our Gitter chat!
To chat with the rest of us visit our [gitter channel](https://gitter.im/PyTorch-Lightning/community?utm_source=share-link&utm_medium=link&utm_campaign=share-link)!
---
## FAQ
**How do I use Lightning for rapid research?**
[Here's a walk-through](https://williamfalcon.github.io/pytorch-lightning/)
**Why was Lightning created?**
Lightning has 3 goals in mind:
1. Maximal flexibility while abstracting out the common boilerplate across research projects.
2. Reproducibility. If all projects use the LightningModule template, it will be much much easier to understand what's going on and where to look! It will also mean every implementation follows a standard format.
3. Democratizing PyTorch power user features. Distributed training? 16-bit? know you need them but don't want to take the time to implement? All good... these come built into Lightning.
**How does Lightning compare with Ignite and fast.ai?**
[Here's a thorough comparison](https://medium.com/@_willfalcon/pytorch-lightning-vs-pytorch-ignite-vs-fast-ai-61dc7480ad8a).
**Is this another library I have to learn?**
Nope! We use pure Pytorch everywhere and don't add unecessary abstractions!
**Are there plans to support Python 2?**
Nope.
**Are there plans to support virtualenv?**
Nope. Please use anaconda or miniconda.
**Which PyTorch versions do you support?**
##### PyTorch 1.1.0
```bash
# install pytorch 1.1.0 using the official instructions
# install test-tube 0.6.7.6 which supports 1.1.0
pip install test-tube==0.6.7.6
# install latest Lightning version without upgrading deps
pip install -U --no-deps pytorch-lightning
```
##### PyTorch 1.2.0
Install via pip as normal
## Bleeding edge
If you can't wait for the next release, install the most up to date code with:
```bash
pip install git+https://github.com/williamFalcon/pytorch-lightning.git@master --upgrade
```
```
-64
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@@ -1,64 +0,0 @@
# https://www.appveyor.com/docs/appveyor-yml/
environment:
# SDK v7.0 MSVC Express 2008's SetEnv.cmd script will fail if the
# /E:ON and /V:ON options are not enabled in the batch script interpreter
# See: http://stackoverflow.com/a/13751649/163740
CMD_IN_ENV: "cmd /E:ON /V:ON /C obvci_appveyor_python_build_env.cmd"
matrix:
# Pre-installed Python versions, which Appveyor may upgrade to
# a later point release.
# See: http://www.appveyor.com/docs/installed-software#python
# - PYTHON: "C:\\Python35-x64"
# PYTHON_VERSION: "3.5.x"
# PYTHON_ARCH: "64"
# TOXENV: "py35"
- PYTHON: "C:\\Python36-x64"
PYTHON_VERSION: "3.6.x"
PYTHON_ARCH: "64"
TOXENV: "py36"
PIP_PYVER: "36"
- PYTHON: "C:\\Python37-x64"
PYTHON_VERSION: "3.7.x"
PYTHON_ARCH: "64"
TOXENV: "py37"
PIP_PYVER: "37"
build: off
# https://www.appveyor.com/docs/build-cache/
cache:
- C:\ProgramData\chocolatey\bin -> appveyor.yml
- C:\ProgramData\chocolatey\lib -> appveyor.yml
- '%LOCALAPPDATA%\pip\Cache -> appveyor.yml'
# scripts that run after cloning repository
install:
# If there is a newer build queued for the same PR, cancel this one.
# The AppVeyor 'rollout builds' option is supposed to serve the same
# purpose but it is problematic because it tends to cancel builds pushed
# directly to master instead of just PR builds (or the converse).
- SET PATH=%PYTHON%;%PYTHON%\\Scripts;%path%
- pip install -U --user pip
- pip install -r requirements.txt -f https://download.pytorch.org/whl/torch_stable.html
- pip install -r ./tests/requirements.txt
# scripts to run before tests (working directory and environment changes are persisted from the previous steps such as "before_build")
before_test:
- python --version
- pip --version
- pip list
- dir
# to run your custom scripts instead of automatic tests
test_script:
- tox --sitepackages --parallel auto
on_success:
- coverage report
# - codecov

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@@ -3,96 +3,82 @@
A lightning module is a strict superclass of nn.Module, it provides a standard interface for the trainer to interact with the model.
The easiest thing to do is copy the [minimal example](https://williamfalcon.github.io/pytorch-lightning/LightningModule/RequiredTrainerInterface/#minimal-example) below and modify accordingly.
The easiest thing to do is copy [this template](../../pytorch_lightning/examples/new_project_templates/lightning_module_template.py) and modify accordingly.
Otherwise, to Define a Lightning Module, implement the following methods:
**Required**:
- [training_step](RequiredTrainerInterface.md#training_step)
- [tng_dataloader](RequiredTrainerInterface.md#tng_dataloader)
- [configure_optimizers](RequiredTrainerInterface.md#configure_optimizers)
- [training_step](RequiredTrainerInterface.md#training_step)
- [validation_step](RequiredTrainerInterface.md#validation_step)
- [validation_end](RequiredTrainerInterface.md#validation_end)
- [configure_optimizers](RequiredTrainerInterface.md#configure_optimizers)
- [get_save_dict](RequiredTrainerInterface.md#get_save_dict)
- [load_model_specific](RequiredTrainerInterface.md#load_model_specific)
- [tng_dataloader](RequiredTrainerInterface.md#tng_dataloader)
- [tng_dataloader](RequiredTrainerInterface.md#tng_dataloader)
- [test_dataloader](RequiredTrainerInterface.md#test_dataloader)
**Optional**:
- [validation_step](RequiredTrainerInterface.md#validation_step)
- [validation_end](RequiredTrainerInterface.md#validation_end)
- [val_dataloader](RequiredTrainerInterface.md#val_dataloader)
- [test_dataloader](RequiredTrainerInterface.md#test_dataloader)
- [on_save_checkpoint](RequiredTrainerInterface.md#on_save_checkpoint)
- [on_load_checkpoint](RequiredTrainerInterface.md#on_load_checkpoint)
- [update_tng_log_metrics](RequiredTrainerInterface.md#update_tng_log_metrics)
- [add_model_specific_args](RequiredTrainerInterface.md#add_model_specific_args)
- [update_tng_log_metrics](RequiredTrainerInterface.md#update_tng_log_metrics)
- [add_model_specific_args](RequiredTrainerInterface.md#add_model_specific_args)
---
### Minimal example
**Minimal example**
```python
import os
import pytorch_lightning as ptl
import torch
from torch.nn import functional as F
from torch.utils.data import DataLoader
from torchvision.datasets import MNIST
import torchvision.transforms as transforms
import pytorch_lightning as pl
class CoolModel(ptl.LightningModule):
class CoolModel(pl.LightningModule):
def __init__(self):
def __init(self):
super(CoolModel, self).__init__()
# not the best model...
self.l1 = torch.nn.Linear(28 * 28, 10)
def forward(self, x):
return torch.relu(self.l1(x.view(x.size(0), -1)))
return torch.relu(self.l1(x))
def my_loss(self, y_hat, y):
return F.cross_entropy(y_hat, y)
def training_step(self, batch, batch_nb):
# REQUIRED
x, y = batch
y_hat = self.forward(x)
return {'loss': F.cross_entropy(y_hat, y)}
return {'tng_loss': self.my_loss(y_hat, y)}
def validation_step(self, batch, batch_nb):
# OPTIONAL
x, y = batch
y_hat = self.forward(x)
return {'val_loss': F.cross_entropy(y_hat, y)}
return {'val_loss': self.my_loss(y_hat, y)}
def validation_end(self, outputs):
# OPTIONAL
avg_loss = torch.stack([x['val_loss'] for x in outputs]).mean()
return {'avg_val_loss': avg_loss}
avg_loss = torch.stack([x for x in outputs['val_loss']]).mean()
return avg_loss
def configure_optimizers(self):
# REQUIRED
return [torch.optim.Adam(self.parameters(), lr=0.02)]
@pl.data_loader
@ptl.data_loader
def tng_dataloader(self):
return DataLoader(MNIST(os.getcwd(), train=True, download=True, transform=transforms.ToTensor()), batch_size=32)
return DataLoader(MNIST('path/to/save', train=True), batch_size=32)
@pl.data_loader
@ptl.data_loader
def val_dataloader(self):
# OPTIONAL
# can also return a list of val dataloaders
return DataLoader(MNIST(os.getcwd(), train=True, download=True, transform=transforms.ToTensor()), batch_size=32)
return DataLoader(MNIST('path/to/save', train=False), batch_size=32)
@pl.data_loader
@ptl.data_loader
def test_dataloader(self):
# OPTIONAL
return DataLoader(MNIST(os.getcwd(), train=False, download=True, transform=transforms.ToTensor()), batch_size=32)
return DataLoader(MNIST('path/to/save', train=False), batch_size=32)
```
---
### How do these methods fit into the broader training?
The LightningModule interface is on the right. Each method corresponds to a part of a research project. Lightning automates everything not in blue.
<p align="center">
<a href="https://github.com/williamFalcon/pytorch-lightning/blob/master/docs/source/_static/overview_flat.jpg">
<img alt="" src="https://github.com/williamFalcon/pytorch-lightning/blob/master/docs/source/_static/overview_flat.jpg" height="900px">
</a>
</p>
## Required Methods
---
### training_step
@@ -136,106 +122,18 @@ def training_step(self, data_batch, batch_nb):
# return a dict
return output
```
If you define multiple optimizers, this step will also be called with an additional ```optimizer_idx``` param.
``` {.python}
# Multiple optimizers (ie: GANs)
def training_step(self, data_batch, batch_nb, optimizer_idx):
if optimizer_idx == 0:
# do training_step with encoder
if optimizer_idx == 1:
# do training_step with decoder
```
---
### tng_dataloader
``` {.python}
@pl.data_loader
def tng_dataloader(self)
```
Called by lightning during training loop. Make sure to use the @pl.data_loader decorator, this ensures not calling this function until the data are needed.
##### Return
PyTorch DataLoader
**Example**
``` {.python}
@pl.data_loader
def tng_dataloader(self):
transform = transforms.Compose([transforms.ToTensor(), transforms.Normalize((0.5,), (1.0,))])
dataset = MNIST(root='/path/to/mnist/', train=True, transform=transform, download=True)
loader = torch.utils.data.DataLoader(
dataset=dataset,
batch_size=self.hparams.batch_size,
shuffle=True
)
return loader
```
---
### configure_optimizers
``` {.python}
def configure_optimizers(self)
```
Set up as many optimizers and (optionally) learning rate schedulers as you need. Normally you'd need one. But in the case of GANs or something more esoteric you might have multiple.
Lightning will call .backward() and .step() on each one in every epoch. If you use 16 bit precision it will also handle that.
**Note:** If you use multiple optimizers, training_step will have an additional ```optimizer_idx``` parameter.
##### Return
Return any of these 3 options:
Single optimizer
List or Tuple - List of optimizers
Two lists - The first list has multiple optimizers, the second a list of learning-rate schedulers
**Example**
``` {.python}
# most cases
def configure_optimizers(self):
opt = Adam(self.parameters(), lr=0.01)
return opt
# multiple optimizer case (eg: GAN)
def configure_optimizers(self):
generator_opt = Adam(self.model_gen.parameters(), lr=0.01)
disriminator_opt = Adam(self.model_disc.parameters(), lr=0.02)
return generator_opt, disriminator_opt
# example with learning_rate schedulers
def configure_optimizers(self):
generator_opt = Adam(self.model_gen.parameters(), lr=0.01)
disriminator_opt = Adam(self.model_disc.parameters(), lr=0.02)
discriminator_sched = CosineAnnealing(discriminator_opt, T_max=10)
return [generator_opt, disriminator_opt], [discriminator_sched]
```
If you need to control how often those optimizers step or override the default .step() schedule, override
the [optimizer_step](https://williamfalcon.github.io/pytorch-lightning/Trainer/hooks/#optimizer_step) hook.
## Optional Methods
---
### validation_step
``` {.python}
def validation_step(self, data_batch, batch_nb)
# if have multiple val dataloaders:
def validation_step(self, data_batch, batch_nb, dataloader_idx)
def validation_step(self, data_batch, batch_nb)
```
**OPTIONAL**
If you don't need to validate you don't need to implement this method.
In this step you'd normally generate examples or calculate anything of interest such as accuracy.
The dict you return here will be available in the validation_end method.
In this step you'd normally do the forward pass and calculate the loss for a batch. You can also do fancier things like multiple forward passes or something specific to your model.
This is most likely the same as your training_step. But unlike training step, the outputs from here will go to validation_end for collation.
**Params**
@@ -243,18 +141,16 @@ The dict you return here will be available in the validation_end method.
|---|---|
| data_batch | The output of your dataloader. A tensor, tuple or list |
| batch_nb | Integer displaying which batch this is |
| dataloader_i | Integer displaying which dataloader this is (only if multiple val datasets used) |
**Return**
| Return | description | optional |
|---|---|---|
| dict | Dict or OrderedDict with metrics to display in progress bar. All keys must be tensors. | Y |
| dict | Dict of OrderedDict with metrics to display in progress bar. All keys must be tensors. | Y |
**Example**
``` {.python}
# CASE 1: A single validation dataset
def validation_step(self, data_batch, batch_nb):
x, y, z = data_batch
@@ -262,12 +158,6 @@ def validation_step(self, data_batch, batch_nb):
out = self.forward(x)
loss = self.loss(out, x)
# log 6 example images
# or generated text... or whatever
sample_imgs = x[:6]
grid = torchvision.utils.make_grid(sample_imgs)
self.experiment.add_image('example_images', grid, 0)
# calculate acc
labels_hat = torch.argmax(out, dim=1)
val_acc = torch.sum(y == labels_hat).item() / (len(y) * 1.0)
@@ -281,29 +171,16 @@ def validation_step(self, data_batch, batch_nb):
# return an optional dict
return output
```
If you pass in multiple validation datasets, validation_step will have an additional argument.
```python
# CASE 2: multiple validation datasets
def validation_step(self, data_batch, batch_nb, dataset_idx):
# dataset_idx tells you which dataset this is.
```
The ```dataset_idx``` corresponds to the order of datasets returned in ```val_dataloader```.
```
---
### validation_end
``` {.python}
def validation_end(self, outputs)
```
If you didn't define a validation_step, this won't be called.
```
Called at the end of the validation loop with the output of each validation_step. Called once per validation dataset.
The outputs here are strictly for the progress bar. If you don't need to display anything, don't return anything.
Called at the end of the validation loop with the output of each validation_step.
**Params**
@@ -339,35 +216,63 @@ def validation_end(self, outputs):
```
---
### on_save_checkpoint
### configure_optimizers
``` {.python}
def on_save_checkpoint(self, checkpoint)
def configure_optimizers(self)
```
Called by lightning to checkpoint your model. Lightning saves the training state (current epoch, global_step, etc)
and also saves the model state_dict. If you want to save anything else, use this method to add your own
key-value pair.
Set up as many optimizers as you need. Normally you'd need one. But in the case of GANs or something more esoteric you might have multiple.
Lightning will call .backward() and .step() on each one. If you use 16 bit precision it will also handle that.
##### Return
Nothing
List - List of optimizers
**Example**
``` {.python}
def on_save_checkpoint(self, checkpoint):
# 99% of use cases you don't need to implement this method
checkpoint['something_cool_i_want_to_save'] = my_cool_pickable_object
# most cases
def configure_optimizers(self):
opt = Adam(lr=0.01)
return [opt]
# gan example
def configure_optimizers(self):
generator_opt = Adam(lr=0.01)
disriminator_opt = Adam(lr=0.02)
return [generator_opt, disriminator_opt]
```
---
### on_load_checkpoint
### get_save_dict
``` {.python}
def on_load_checkpoint(self, checkpoint)
def get_save_dict(self)
```
Called by lightning to restore your model. Lighting auto-restores global step, epoch, etc...
It also restores the model state_dict.
If you saved something with **on_save_checkpoint** this is your chance to restore this.
Called by lightning to checkpoint your model. Lightning saves current epoch, current batch nb, etc...
All you have to return is what specifically about your lightning model you want to checkpoint.
##### Return
Dictionary - No required keys. Most of the time as described in this example.
**Example**
``` {.python}
def get_save_dict(self):
# 99% of use cases this is all you need to return
checkpoint = {'state_dict': self.state_dict()}
return checkpoint
```
---
### load_model_specific
``` {.python}
def load_model_specific(self, checkpoint)
```
Called by lightning to restore your model. This is your chance to restore your model using the keys you added in get_save_dict.
Lightning will automatically restore current epoch, batch nb, etc.
##### Return
Nothing
@@ -375,30 +280,54 @@ Nothing
**Example**
``` {.python}
def on_load_checkpoint(self, checkpoint):
# 99% of the time you don't need to implement this method
self.something_cool_i_want_to_save = checkpoint['something_cool_i_want_to_save']
def load_model_specific(self, checkpoint):
# you defined 'state_dict' in get_save_dict()
self.load_state_dict(checkpoint['state_dict'])
```
---
### tng_dataloader
``` {.python}
@ptl.data_loader
def tng_dataloader(self)
```
Called by lightning during training loop. Make sure to use the @ptl.data_loader decorator, this ensures not calling this function until the data are needed.
##### Return
Pytorch DataLoader
**Example**
``` {.python}
@ptl.data_loader
def tng_dataloader(self):
transform = transforms.Compose([transforms.ToTensor(), transforms.Normalize((0.5,), (1.0,))])
dataset = MNIST(root='/path/to/mnist/', train=True, transform=transform, download=True)
loader = torch.utils.data.DataLoader(
dataset=dataset,
batch_size=self.hparams.batch_size,
shuffle=True
)
return loader
```
---
### val_dataloader
``` {.python}
@pl.data_loader
def val_dataloader(self)
@ptl.data_loader
def tng_dataloader(self)
```
**OPTIONAL**
If you don't need a validation dataset and a validation_step, you don't need to implement this method.
Called by lightning during validation loop. Make sure to use the @pl.data_loader decorator, this ensures not calling this function until the data are needed.
Called by lightning during validation loop. Make sure to use the @ptl.data_loader decorator, this ensures not calling this function until the data are needed.
##### Return
PyTorch DataLoader or list of PyTorch Dataloaders.
Pytorch DataLoader
**Example**
``` {.python}
@pl.data_loader
@ptl.data_loader
def val_dataloader(self):
transform = transforms.Compose([transforms.ToTensor(), transforms.Normalize((0.5,), (1.0,))])
dataset = MNIST(root='/path/to/mnist/', train=False, transform=transform, download=True)
@@ -409,35 +338,24 @@ def val_dataloader(self):
)
return loader
# can also return multiple dataloaders
@pl.data_loader
def val_dataloader(self):
return [loader_a, loader_b, ..., loader_n]
```
In the case where you return multiple val_dataloaders, the validation_step will have an arguement ```dataset_idx```
which matches the order here.
---
### test_dataloader
``` {.python}
@pl.data_loader
@ptl.data_loader
def test_dataloader(self)
```
**OPTIONAL**
If you don't need a test dataset and a test_step, you don't need to implement this method.
Called by lightning during test loop. Make sure to use the @pl.data_loader decorator, this ensures not calling this function until the data are needed.
Called by lightning during test loop. Make sure to use the @ptl.data_loader decorator, this ensures not calling this function until the data are needed.
##### Return
PyTorch DataLoader
Pytorch DataLoader
**Example**
``` {.python}
@pl.data_loader
@ptl.data_loader
def test_dataloader(self):
transform = transforms.Compose([transforms.ToTensor(), transforms.Normalize((0.5,), (1.0,))])
dataset = MNIST(root='/path/to/mnist/', train=False, transform=transform, download=True)
@@ -457,7 +375,7 @@ def test_dataloader(self):
def update_tng_log_metrics(self, logs)
```
Called by lightning right before it logs metrics for this batch.
This is a chance to amend or add to the metrics about to be logged.
This is a chance to ammend or add to the metrics about to be logged.
##### Return
Dict
@@ -509,4 +427,4 @@ def add_model_specific_args(parent_parser, root_dir):
parser.opt_list('--batch_size', default=256, type=int, options=[32, 64, 128, 256], tunable=False)
parser.opt_list('--optimizer_name', default='adam', type=str, options=['adam'], tunable=False)
return parser
```
```
+2 -3
View File
@@ -21,8 +21,7 @@ pretrained_model = MyLightningModule.load_from_metrics(
map_location=None
)
# predict
pretrained_model.eval()
# predict
pretrained_model.freeze()
y_hat = pretrained_model(x)
```
@@ -31,7 +30,7 @@ y_hat = pretrained_model(x)
| Param | description |
|---|---|
| weights_path | Path to a PyTorch checkpoint |
| weights_path | Path to a pytorch checkpoint |
| tags_csv | Path to meta_tags.csv file generated by the test-tube Experiment |
| on_gpu | if True, puts model on GPU. Make sure to use transforms option if model devices have changed |
| map_location | A dictionary mapping saved weight GPU devices to new GPU devices |
+1 -15
View File
@@ -10,7 +10,7 @@ Current dtype
---
#### experiment
An instance of test-tube Experiment which you can use to log anything for tensorboard (subclass of [PyTorch SummaryWriter](https://pytorch.org/docs/stable/tensorboard.html)).
An instance of test-tube Experiment which you can use to log anything for tensorboarX.
```{.python}
self.experiment.add_embedding(...)
self.experiment.log({'val_loss': 0.9})
@@ -38,17 +38,3 @@ self.trainer.current_epoch
...
```
## Debugging
The LightningModule also offers these tricks to help debug.
---
#### example_input_array
In the LightningModule init, you can set a dummy tensor for this property
to get a print out of sizes coming into and out of every layer.
```python
def __init__(self):
# put the dimensions of the first input to your system
self.example_input_array = torch.rand(5, 28 * 28)
```
+1 -48
View File
@@ -5,7 +5,7 @@ Lightning can automate saving and loading checkpoints.
To enable checkpointing, define the checkpoint callback and give it to the trainer.
``` {.python}
from pytorch_lightning.callbacks import ModelCheckpoint
from pytorch_lightning.utils.pt_callbacks import ModelCheckpoint
checkpoint_callback = ModelCheckpoint(
filepath='/path/to/store/weights.ckpt',
@@ -18,52 +18,5 @@ checkpoint_callback = ModelCheckpoint(
trainer = Trainer(checkpoint_callback=checkpoint_callback)
```
---
### Restoring training session
You might want to not only load a model but also continue training it. Use this method to
restore the trainer state as well. This will continue from the epoch and global step you last left off.
However, the dataloaders will start from the first batch again (if you shuffled it shouldn't matter).
Lightning will restore the session if you pass an experiment with the same version and there's a saved checkpoint.
``` {.python}
from test_tube import Experiment
exp = Experiment(version=a_previous_version_with_a_saved_checkpoint)
trainer = Trainer(experiment=exp)
# this fit call loads model weights and trainer state
# the trainer continues seamlessly from where you left off
# without having to do anything else.
trainer.fit(model)
```
The trainer restores:
- global_step
- current_epoch
- All optimizers
- All lr_schedulers
- Model weights
You can even change the logic of your model as long as the weights and "architecture" of
the system isn't different. If you add a layer, for instance, it might not work.
At a rough level, here's [what happens inside Trainer](https://github.com/williamFalcon/pytorch-lightning/blob/master/pytorch_lightning/root_module/model_saving.py#L63):
```python
self.global_step = checkpoint['global_step']
self.current_epoch = checkpoint['epoch']
# restore the optimizers
optimizer_states = checkpoint['optimizer_states']
for optimizer, opt_state in zip(self.optimizers, optimizer_states):
optimizer.load_state_dict(opt_state)
# restore the lr schedulers
lr_schedulers = checkpoint['lr_schedulers']
for scheduler, lrs_state in zip(self.lr_schedulers, lr_schedulers):
scheduler.load_state_dict(lrs_state)
# uses the model you passed into trainer
model.load_state_dict(checkpoint['state_dict'])
```
+12 -27
View File
@@ -23,32 +23,6 @@ have configuration issues depending on your cluster.
For a deeper understanding of what lightning is doing, feel free to read [this guide](https://medium.com/@_willfalcon/9-tips-for-training-lightning-fast-neural-networks-in-pytorch-8e63a502f565).
---
#### Distributed and 16-bit precision.
Due to an issue with apex and DistributedDataParallel (PyTorch and NVIDIA issue), Lightning does
not allow 16-bit and DP training. We tried to get this to work, but it's an issue on their end.
Below are the possible configurations we support.
| 1 GPU | 1+ GPUs | DP | DDP | 16-bit | command |
|---|---|---|---|---|---|
| Y | | | | | ```Trainer(gpus=[0])``` |
| Y | | | | Y | ```Trainer(gpus=[0], use_amp=True)``` |
| | Y | Y | | | ```Trainer(gpus=[0, ...])``` |
| | Y | | Y | | ```Trainer(gpus=[0, ...], distributed_backend='ddp')``` |
| | Y | | Y | Y | ```Trainer(gpus=[0, ...], distributed_backend='ddp', use_amp=True)``` |
---
#### CUDA flags
CUDA flags make certain GPUs visible to your script.
Lightning sets these for you automatically, there's NO NEED to do this yourself.
```python
# lightning will set according to what you give the trainer
# os.environ["CUDA_DEVICE_ORDER"] = "PCI_BUS_ID"
# os.environ["CUDA_VISIBLE_DEVICES"] = "0"
```
---
#### 16-bit mixed precision
16 bit precision can cut your memory footprint by half. If using volta architecture GPUs it can give a dramatic training speed-up as well.
@@ -69,6 +43,10 @@ trainer = Trainer(amp_level='O2', use_amp=False)
#### Single-gpu
Make sure you're on a GPU machine.
```python
# set these flags
os.environ["CUDA_DEVICE_ORDER"] = "PCI_BUS_ID"
os.environ["CUDA_VISIBLE_DEVICES"] = "0"
# DEFAULT
trainer = Trainer(gpus=[0])
```
@@ -78,6 +56,13 @@ trainer = Trainer(gpus=[0])
Make sure you're on a GPU machine. You can set as many GPUs as you want.
In this setting, the model will run on all 8 GPUs at once using DataParallel under the hood.
```python
# set these flags
# lightning sets these flags for you automatically
# no need to set yourself
# os.environ["CUDA_DEVICE_ORDER"] = "PCI_BUS_ID"
# os.environ["CUDA_VISIBLE_DEVICES"] = "0,1,2,3,4,5,6,7"
# to use DataParallel (default)
trainer = Trainer(gpus=[0,1,2,3,4,5,6,7], distributed_backend='dp')
@@ -110,7 +95,7 @@ cluster.add_command('export NCCL_SOCKET_IFNAME=^docker0,lo')
cluster.add_command('export NCCL_DEBUG=INFO')
# setting a master port here is a good idea.
cluster.add_command('export MASTER_PORT=%r' % PORT)
cluster.add_command(f'export MASTER_PORT={PORT}')
# good to load the latest NCCL version
cluster.load_modules(['NCCL/2.4.7-1-cuda.10.0'])
+3 -39
View File
@@ -5,7 +5,7 @@ Lighting offers a few options for logging information about model, gpu usage, et
#### Display metrics in progress bar
``` {.python}
# DEFAULT
trainer = Trainer(show_progress_bar=True)
trainer = Trainer(progress_bar=True)
```
---
@@ -33,7 +33,7 @@ trainer = Trainer(process_position=1)
Whenever you call .save() on the test-tube experiment it logs all the hyperparameters in current use.
Give lightning a test-tube Experiment object to automate this for you.
``` {.python}
from test_tube import Experiment
from test-tube import Experiment
exp = Experiment(...)
Trainer(experiment=exp)
@@ -44,48 +44,12 @@ Trainer(experiment=exp)
Whenever you call .save() on the test-tube experiment it snapshows all code and pushes to a git tag.
Give lightning a test-tube Experiment object to automate this for you.
``` {.python}
from test_tube import Experiment
from test-tube import Experiment
exp = Experiment(create_git_tag=True)
Trainer(experiment=exp)
```
---
### Tensorboard support
In the LightningModule you can access the experiment logger by doing:
```python
self.experiment
# add image
# Look at PyTorch SummaryWriter docs for what you can do.
self.experiment.add_image(...)
```
The experiment object is a strict subclass of PyTorch SummaryWriter. However, this class
also snapshots every detail about the experiment (data folder paths, code, hyperparams),
and allows you to visualize it using tensorboard.
``` {.python}
from test_tube import Experiment, HyperOptArgumentParser
# exp hyperparams
args = HyperOptArgumentParser()
hparams = args.parse_args()
# this is a summaryWriter with nicer logging structure
exp = Experiment(save_dir='/some/path', create_git_tag=True)
# track experiment details (must be ArgumentParser or HyperOptArgumentParser).
# each option in the parser is tracked
exp.argparse(hparams)
exp.tag({'description': 'running demo'})
# trainer uses the exp object to log exp data
trainer = Trainer(experiment=exp)
trainer.fit(model)
# view logs at:
# tensorboard --logdir /some/path
```
---
#### Write logs file to csv every k batches
+17 -12
View File
@@ -1,4 +1,4 @@
The lightning training loop handles everything except the actual computations of your model. To decide what will happen in your training loop, define the [training_step function](https://williamfalcon.github.io/pytorch-lightning/LightningModule/RequiredTrainerInterface/#training_step).
The lightning training loop handles everything except the actual computations of your model. To decide what will happen in your training loop, define the [training_step function](../../Pytorch-lightning/LightningModule/#training_step).
Below are all the things lightning automates for you in the training loop.
@@ -11,6 +11,17 @@ Accumulated gradients runs K small batches of size N before doing a backwards pa
trainer = Trainer(accumulate_grad_batches=1)
```
---
#### Anneal Learning rate
Cut the learning rate by 10 at every epoch listed in this list.
``` {.python}
# DEFAULT (don't anneal)
trainer = Trainer(lr_scheduler_milestones=None)
# cut LR by 10 at 100, 200, and 300 epochs
trainer = Trainer(lr_scheduler_milestones='100, 200, 300')
```
---
#### Force training for min or max epochs
It can be useful to force training for a minimum number of epochs or limit to a max number
@@ -28,18 +39,15 @@ trainer = Trainer(enable_early_stop=True)
```
---
#### Gradient Clipping
Gradient clipping may be enabled to avoid exploding gradients.
Specifically, this will [clip the gradient norm computed over all model parameters *together*](https://pytorch.org/docs/stable/nn.html#torch.nn.utils.clip_grad_norm_).
#### Gradient Clipping
Use this to turn off early stopping and run training to the [max_epoch](#force-training-for-min-or-max-epochs)
``` {.python}
# DEFAULT (ie: don't clip)
trainer = Trainer(gradient_clip=0)
# clip gradients with norm above 0.5
trainer = Trainer(gradient_clip=0.5)
```
---
#### Inspect gradient norms
Looking at grad norms can help you figure out where training might be going wrong.
@@ -54,10 +62,7 @@ trainer = Trainer(track_grad_norm=2)
---
#### Set how much of the training set to check
If you don't want to check 100% of the training set (for debugging or if it's huge), set this flag.
train_percent_check will be overwritten by overfit_pct if `overfit_pct > 0`
If you don't want to check 100% of the training set (for debugging or if it's huge), set this flag
``` {.python}
# DEFAULT
trainer = Trainer(train_percent_check=1.0)
+1 -7
View File
@@ -1,4 +1,4 @@
The lightning validation loop handles everything except the actual computations of your model. To decide what will happen in your validation loop, define the [validation_step function](https://williamfalcon.github.io/pytorch-lightning/LightningModule/RequiredTrainerInterface/#validation_step).
The lightning validation loop handles everything except the actual computations of your model. To decide what will happen in your validation loop, define the [validation_step function](../../Pytorch-lightning/LightningModule/#validation_step).
Below are all the things lightning automates for you in the validation loop.
**Note**
@@ -18,9 +18,6 @@ trainer = Trainer(check_val_every_n_epoch=1)
---
#### Set how much of the validation set to check
If you don't want to check 100% of the validation set (for debugging or if it's huge), set this flag
val_percent_check will be overwritten by overfit_pct if `overfit_pct > 0`
``` {.python}
# DEFAULT
trainer = Trainer(val_percent_check=1.0)
@@ -32,9 +29,6 @@ trainer = Trainer(val_percent_check=0.1)
---
#### Set how much of the test set to check
If you don't want to check 100% of the test set (for debugging or if it's huge), set this flag
test_percent_check will be overwritten by overfit_pct if `overfit_pct > 0`
``` {.python}
# DEFAULT
trainer = Trainer(test_percent_check=1.0)
-3
View File
@@ -23,9 +23,6 @@ trainer = Trainer(track_grad_norm=2)
---
#### Make model overfit on subset of data
A useful debugging trick is to make your model overfit a tiny fraction of the data.
setting `overfit_pct > 0` will overwrite train_percent_check, val_percent_check, test_percent_check
``` {.python}
# DEFAULT don't overfit (ie: normal training)
trainer = Trainer(overfit_pct=0.0)
-141
View File
@@ -1,141 +0,0 @@
# Hooks
[[Github Code](https://github.com/williamFalcon/pytorch-lightning/blob/master/pytorch_lightning/root_module/hooks.py)]
There are cases when you might want to do something different at different parts of the training/validation loop.
To enable a hook, simply override the method in your LightningModule and the trainer will call it at the correct time.
**Contributing** If there's a hook you'd like to add, simply:
1. Fork PyTorchLightning.
2. Add the hook [here](https://github.com/williamFalcon/pytorch-lightning/blob/master/pytorch_lightning/root_module/hooks.py).
3. Add the correct place in the [Trainer](https://github.com/williamFalcon/pytorch-lightning/blob/master/pytorch_lightning/models/trainer.py) where it should be called.
---
#### on_epoch_start
Called in the training loop at the very beginning of the epoch.
```python
def on_epoch_start(self):
# do something when the epoch starts
```
---
#### on_epoch_end
Called in the training loop at the very end of the epoch.
```python
def on_epoch_end(self):
# do something when the epoch ends
```
---
#### on_batch_start
Called in the training loop before anything happens for that batch.
```python
def on_batch_start(self):
# do something when the batch starts
```
---
#### on_batch_end
Called in the training loop after the batch.
```python
def on_batch_end(self):
# do something when the batch ends
```
---
#### on_pre_performance_check
Called at the very beginning of the validation loop.
```python
def on_pre_performance_check(self):
# do something before validation starts
```
---
#### on_post_performance_check
Called at the very end of the validation loop.
```python
def on_post_performance_check(self):
# do something before validation end
```
---
#### on_tng_metrics
Called in the training loop, right before metrics are logged.
Although you can log at any time by using self.experiment, you can use
this callback to modify what will be logged.
```python
def on_tng_metrics(self, metrics):
# do something before validation end
```
---
#### optimizer_step
Calls .step() and .zero_grad for each optimizer.
You can override this method to adjust how you do the optimizer step for each optimizer
Called once per optimizer
```python
# DEFAULT
def optimizer_step(self, current_epoch, batch_nb, optimizer, optimizer_i):
optimizer.step()
optimizer.zero_grad()
# Alternating schedule for optimizer steps (ie: GANs)
def optimizer_step(self, current_epoch, batch_nb, optimizer, optimizer_i):
# update generator opt every 2 steps
if optimizer_i == 0:
if batch_nb % 2 == 0 :
optimizer.step()
optimizer.zero_grad()
# update discriminator opt every 4 steps
if optimizer_i == 1:
if batch_nb % 4 == 0 :
optimizer.step()
optimizer.zero_grad()
# ...
# add as many optimizers as you want
```
This step allows you to do a lot of non-standard training tricks such as learning-rate warm-up:
```python
# learning rate warm-up
def optimizer_step(self, current_epoch, batch_nb, optimizer, optimizer_i):
# warm up lr
if self.trainer.global_step < 500:
lr_scale = min(1., float(self.trainer.global_step + 1) / 500.)
for pg in optimizer.param_groups:
pg['lr'] = lr_scale * self.hparams.learning_rate
# update params
optimizer.step()
optimizer.zero_grad()
```
---
#### on_before_zero_grad
Called in the training loop after taking an optimizer step and before zeroing grads.
Good place to inspect weight information with weights updated.
Called once per optimizer
```python
def on_before_zero_grad(self, optimizer):
# do something with the optimizer or inspect it.
```
---
#### on_after_backward
Called in the training loop after model.backward()
This is the ideal place to inspect or log gradient information
```python
def on_after_backward(self):
# example to inspect gradient information in tensorboard
if self.trainer.global_step % 25 == 0: # don't make the tf file huge
params = self.state_dict()
for k, v in params.items():
grads = v
name = k
self.experiment.add_histogram(tag=name, values=grads, global_step=self.trainer.global_step)
```
+33 -39
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@@ -19,62 +19,56 @@ But of course the fun is in all the advanced things it can do:
**Checkpointing**
- [Model saving](https://williamfalcon.github.io/pytorch-lightning/Trainer/Checkpointing/#model-saving)
- [Model loading](https://williamfalcon.github.io/pytorch-lightning/LightningModule/methods/#load-from-metrics)
- [Restoring training session](https://williamfalcon.github.io/pytorch-lightning/Trainer/Checkpointing/#restoring-training-session)
- Model saving
- Model loading
**Computing cluster (SLURM)**
- [Running grid search on a cluster](https://williamfalcon.github.io/pytorch-lightning/Trainer/SLURM%20Managed%20Cluster#running-grid-search-on-a-cluster)
- [Walltime auto-resubmit](https://williamfalcon.github.io/pytorch-lightning/Trainer/SLURM%20Managed%20Cluster#walltime-auto-resubmit)
- [Running grid search on a cluster](SLURM%20Managed%20Cluster/#running-grid-search-on-a-cluster)
- [Walltime auto-resubmit](SLURM%20Managed%20Cluster/#walltime-auto-resubmit)
**Debugging**
- [Fast dev run](https://williamfalcon.github.io/pytorch-lightning/Trainer/debugging/#fast-dev-run)
- [Inspect gradient norms](https://williamfalcon.github.io/pytorch-lightning/Trainer/debugging/#inspect-gradient-norms)
- [Log GPU usage](https://williamfalcon.github.io/pytorch-lightning/Trainer/debugging/#Log-gpu-usage)
- [Make model overfit on subset of data](https://williamfalcon.github.io/pytorch-lightning/Trainer/debugging/#make-model-overfit-on-subset-of-data)
- [Print the parameter count by layer](https://williamfalcon.github.io/pytorch-lightning/Trainer/debugging/#print-the-parameter-count-by-layer)
- [Pring which gradients are nan](https://williamfalcon.github.io/pytorch-lightning/Trainer/debugging/#print-which-gradients-are-nan)
- [Print input and output size of every module in system](https://williamfalcon.github.io/pytorch-lightning/LightningModule/properties/#example_input_array)
- [Fast dev run](Debugging/#fast-dev-run)
- [Inspect gradient norms](Debugging/#inspect-gradient-norms)
- [Log GPU usage](Debugging/#Log-gpu-usage)
- [Make model overfit on subset of data](Debugging/#make-model-overfit-on-subset-of-data)
- [Print the parameter count by layer](Debugging/#print-the-parameter-count-by-layer)
- [Pring which gradients are nan](Debugging/#print-which-gradients-are-nan)
**Distributed training**
- [16-bit mixed precision](https://williamfalcon.github.io/pytorch-lightning/Trainer/Distributed%20training/#16-bit-mixed-precision)
- [Multi-GPU](https://williamfalcon.github.io/pytorch-lightning/Trainer/Distributed%20training/#Multi-GPU)
- [Multi-node](https://williamfalcon.github.io/pytorch-lightning/Trainer/Distributed%20training/#Multi-node)
- [Single GPU](https://williamfalcon.github.io/pytorch-lightning/Trainer/Distributed%20training/#single-gpu)
- [Self-balancing architecture](https://williamfalcon.github.io/pytorch-lightning/Trainer/Distributed%20training/#self-balancing-architecture)
- [16-bit mixed precision](Distributed%20training/#16-bit-mixed-precision)
- [Multi-GPU](Distributed%20training/#Multi-GPU)
- [Multi-node](Distributed%20training/#Multi-node)
- [Single GPU](Distributed%20training/#single-gpu)
- [Self-balancing architecture](Distributed%20training/#self-balancing-architecture)
**Experiment Logging**
- [Display metrics in progress bar](https://williamfalcon.github.io/pytorch-lightning/Trainer/Logging/#display-metrics-in-progress-bar)
- [Log metric row every k batches](https://williamfalcon.github.io/pytorch-lightning/Trainer/Logging/#log-metric-row-every-k-batches)
- [Process position](https://williamfalcon.github.io/pytorch-lightning/Trainer/Logging/#process-position)
- [Tensorboard support](https://williamfalcon.github.io/pytorch-lightning/Trainer/Logging/#tensorboard-support)
- [Save a snapshot of all hyperparameters](https://williamfalcon.github.io/pytorch-lightning/Trainer/Logging/#save-a-snapshot-of-all-hyperparameters)
- [Snapshot code for a training run](https://williamfalcon.github.io/pytorch-lightning/Trainer/Logging/#snapshot-code-for-a-training-run)
- [Write logs file to csv every k batches](https://williamfalcon.github.io/pytorch-lightning/Trainer/Logging/#write-logs-file-to-csv-every-k-batches)
- [Display metrics in progress bar](Logging/#display-metrics-in-progress-bar)
- Log arbitrary metrics
- [Log metric row every k batches](Logging/#log-metric-row-every-k-batches)
- [Process position](Logging/#process-position)
- [Save a snapshot of all hyperparameters](Logging/#save-a-snapshot-of-all-hyperparameters)
- [Snapshot code for a training run](Logging/#snapshot-code-for-a-training-run)
- [Write logs file to csv every k batches](Logging/#write-logs-file-to-csv-every-k-batches)
**Training loop**
- [Accumulate gradients](https://williamfalcon.github.io/pytorch-lightning/Trainer/Training%20Loop/#accumulated-gradients)
- [Force training for min or max epochs](https://williamfalcon.github.io/pytorch-lightning/Trainer/Training%20Loop/#force-training-for-min-or-max-epochs)
- [Force disable early stop](https://williamfalcon.github.io/pytorch-lightning/Trainer/Training%20Loop/#force-disable-early-stop)
- [Gradient Clipping](https://williamfalcon.github.io/pytorch-lightning/Trainer/Training%20Loop/#gradient-clipping)
- [Hooks](https://williamfalcon.github.io/pytorch-lightning/Trainer/hooks/)
- [Learning rate scheduling](https://williamfalcon.github.io/pytorch-lightning/LightningModule/RequiredTrainerInterface/#configure_optimizers)
- [Use multiple optimizers (like GANs)](https://williamfalcon.github.io/pytorch-lightning/LightningModule/RequiredTrainerInterface/#configure_optimizers)
- [Set how much of the training set to check (1-100%)](https://williamfalcon.github.io/pytorch-lightning/Trainer/Training%20Loop/#set-how-much-of-the-training-set-to-check)
- [Step optimizers at arbitrary intervals](https://williamfalcon.github.io/pytorch-lightning/Trainer/hooks/#optimizer_step)
- [Accumulate gradients](Training%20Loop/#accumulated-gradients)
- [Anneal Learning rate](Training%20Loop/#anneal-learning-rate)
- [Force training for min or max epochs](Training%20Loop/#force-training-for-min-or-max-epochs)
- [Force disable early stop](Training%20Loop/#force-disable-early-stop)
- [Use multiple optimizers (like GANs)](../Pytorch-lightning/LightningModule/#configure_optimizers)
- [Set how much of the training set to check (1-100%)](Training%20Loop/#set-how-much-of-the-training-set-to-check)
**Validation loop**
- [Check validation every n epochs](https://williamfalcon.github.io/pytorch-lightning/Trainer/Validation%20loop/#check-validation-every-n-epochs)
- [Hooks](https://williamfalcon.github.io/pytorch-lightning/Trainer/hooks/)
- [Set how much of the validation set to check](https://williamfalcon.github.io/pytorch-lightning/Trainer/Validation%20loop/#set-how-much-of-the-validation-set-to-check)
- [Set how much of the test set to check](https://williamfalcon.github.io/pytorch-lightning/Trainer/Validation%20loop/#set-how-much-of-the-test-set-to-check)
- [Set validation check frequency within 1 training epoch](https://williamfalcon.github.io/pytorch-lightning/Trainer/Validation%20loop/#set-validation-check-frequency-within-1-training-epoch)
- [Set the number of validation sanity steps](https://williamfalcon.github.io/pytorch-lightning/Trainer/Validation%20loop/#set-the-number-of-validation-sanity-steps)
- [Check validation every n epochs](Validation%20Loop/#check-validation-every-n-epochs)
- [Set how much of the validation set to check](Validation%20Loop/#set-how-much-of-the-validation-set-to-check)
- [Set how much of the test set to check](Validation%20Loop/#set-how-much-of-the-test-set-to-check)
- [Set validation check frequency within 1 training epoch](Validation%20Loop/#set-validation-check-frequency-within-1-training-epoch)
- [Set the number of validation sanity steps](Validation%20Loop/#set-the-number-of-validation-sanity-steps)
@@ -1,2 +1 @@
mkdocs-material==4.4.0
mkdocs==1.0.4
+1 -1
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@@ -3,7 +3,7 @@ In 99% of cases you want to just copy [this template](https://github.com/william
```bash
# get a copy of the module template
wget https://raw.githubusercontent.com/williamFalcon/pytorch-lightning/master/examples/new_project_templates/lightning_module_template.py
wget https://github.com/williamFalcon/pytorch-lightning/blob/master/examples/new_project_templates/lightning_module_template.py
```
---
+10 -72
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@@ -1,68 +1,11 @@
###### New project Quick Start
To start a new project define two files, a LightningModule and a Trainer file.
To illustrate Lightning power and simplicity, here's an example of a typical research flow.
To start a new project define these two files.
###### Case 1: BERT
Let's say you're working on something like BERT but want to try different ways of training or even different networks.
You would define a single LightningModule and use flags to switch between your different ideas.
```python
class BERT(pl.LightningModule):
def __init__(self, model_name, task):
self.task = task
if model_name == 'transformer':
self.net = Transformer()
elif model_name == 'my_cool_version':
self.net = MyCoolVersion()
def training_step(self, batch, batch_nb):
if self.task == 'standard_bert':
# do standard bert training with self.net...
# return loss
if self.task == 'my_cool_task':
# do my own version with self.net
# return loss
```
###### Case 2: COOLER NOT BERT
But if you wanted to try something **completely** different, you'd define a new module for that.
```python
class CoolerNotBERT(pl.LightningModule):
def __init__(self):
self.net = ...
def training_step(self, batch, batch_nb):
# do some other cool task
# return loss
```
###### Rapid research flow
Then you could do rapid research by switching between these two and using the same trainer.
```python
if use_bert:
model = BERT()
else:
model = CoolerNotBERT()
trainer = Trainer(gpus=[0, 1, 2, 3], use_amp=True)
trainer.fit(model)
```
Notice a few things about this flow:
1. You're writing pure PyTorch... no unnecessary abstractions or new libraries to learn.
2. You get free GPU and 16-bit support without writing any of that code in your model.
3. You also get all of the capabilities below (without coding or testing yourself).
---
###### Templates
1. [MNIST LightningModule](https://williamfalcon.github.io/pytorch-lightning/LightningModule/RequiredTrainerInterface/#minimal-example)
2. [Trainer](https://williamfalcon.github.io/pytorch-lightning/Trainer/)
- [Basic CPU Trainer Template](https://github.com/williamFalcon/pytorch-lightning/blob/master/examples/new_project_templates/single_cpu_template.py)
- [Multi-GPU Trainer Template](https://github.com/williamFalcon/pytorch-lightning/blob/master/examples/new_project_templates/single_gpu_node_template.py)
- [GPU cluster Trainer Template](https://github.com/williamFalcon/pytorch-lightning/blob/master/examples/new_project_templates/multi_node_cluster_template.py)
1. [Define a LightningModule](/pytorch-lightning/LightningModule/RequiredTrainerInterface/)
2. [Define a trainer](https://williamfalcon.github.io/pytorch-lightning/Trainer/)
- [Basic CPU Trainer Template](https://github.com/williamFalcon/pytorch-lightning/blob/master/pytorch_lightning/examples/new_project_templates/single_cpu_template.py)
- [Multi-GPU Trainer Template](https://github.com/williamFalcon/pytorch-lightning/blob/master/pytorch_lightning/examples/new_project_templates/single_gpu_node_template.py)
- [GPU cluster Trainer Template](https://github.com/williamFalcon/pytorch-lightning/blob/master/pytorch_lightning/examples/new_project_templates/multi_node_cluster_template.py)
###### Docs shortcuts
- [LightningModule](LightningModule/RequiredTrainerInterface/)
@@ -79,7 +22,6 @@ Notice a few things about this flow:
- [Model saving](https://williamfalcon.github.io/pytorch-lightning/Trainer/Checkpointing/#model-saving)
- [Model loading](https://williamfalcon.github.io/pytorch-lightning/LightningModule/methods/#load-from-metrics)
- [Restoring training session](https://williamfalcon.github.io/pytorch-lightning/Trainer/Checkpointing/#restoring-training-session)
###### Computing cluster (SLURM)
@@ -94,7 +36,6 @@ Notice a few things about this flow:
- [Make model overfit on subset of data](https://williamfalcon.github.io/pytorch-lightning/Trainer/debugging/#make-model-overfit-on-subset-of-data)
- [Print the parameter count by layer](https://williamfalcon.github.io/pytorch-lightning/Trainer/debugging/#print-the-parameter-count-by-layer)
- [Pring which gradients are nan](https://williamfalcon.github.io/pytorch-lightning/Trainer/debugging/#print-which-gradients-are-nan)
- [Print input and output size of every module in system](https://williamfalcon.github.io/pytorch-lightning/LightningModule/properties/#example_input_array)
###### Distributed training
@@ -109,9 +50,9 @@ Notice a few things about this flow:
###### Experiment Logging
- [Display metrics in progress bar](https://williamfalcon.github.io/pytorch-lightning/Trainer/Logging/#display-metrics-in-progress-bar)
- Log arbitrary metrics
- [Log metric row every k batches](https://williamfalcon.github.io/pytorch-lightning/Trainer/Logging/#log-metric-row-every-k-batches)
- [Process position](https://williamfalcon.github.io/pytorch-lightning/Trainer/Logging/#process-position)
- [Tensorboard support](https://williamfalcon.github.io/pytorch-lightning/Trainer/Logging/#tensorboard-support)
- [Save a snapshot of all hyperparameters](https://williamfalcon.github.io/pytorch-lightning/Trainer/Logging/#save-a-snapshot-of-all-hyperparameters)
- [Snapshot code for a training run](https://williamfalcon.github.io/pytorch-lightning/Trainer/Logging/#snapshot-code-for-a-training-run)
- [Write logs file to csv every k batches](https://williamfalcon.github.io/pytorch-lightning/Trainer/Logging/#write-logs-file-to-csv-every-k-batches)
@@ -119,19 +60,16 @@ Notice a few things about this flow:
###### Training loop
- [Accumulate gradients](https://williamfalcon.github.io/pytorch-lightning/Trainer/Training%20Loop/#accumulated-gradients)
- [Anneal Learning rate](https://williamfalcon.github.io/pytorch-lightning/Trainer/Training%20Loop/#anneal-learning-rate)
- [Force training for min or max epochs](https://williamfalcon.github.io/pytorch-lightning/Trainer/Training%20Loop/#force-training-for-min-or-max-epochs)
- [Force disable early stop](https://williamfalcon.github.io/pytorch-lightning/Trainer/Training%20Loop/#force-disable-early-stop)
- [Gradient Clipping](https://williamfalcon.github.io/pytorch-lightning/Trainer/Training%20Loop/#gradient-clipping)
- [Hooks](https://williamfalcon.github.io/pytorch-lightning/Trainer/hooks/)
- [Learning rate scheduling](https://williamfalcon.github.io/pytorch-lightning/LightningModule/RequiredTrainerInterface/#configure_optimizers)
- [Use multiple optimizers (like GANs)](https://williamfalcon.github.io/pytorch-lightning/LightningModule/RequiredTrainerInterface/#configure_optimizers)
- [Use multiple optimizers (like GANs)](https://williamfalcon.github.io/pytorch-lightning/Pytorch-Lightning/LightningModule/#configure_optimizers)
- [Set how much of the training set to check (1-100%)](https://williamfalcon.github.io/pytorch-lightning/Trainer/Training%20Loop/#set-how-much-of-the-training-set-to-check)
- [Step optimizers at arbitrary intervals](https://williamfalcon.github.io/pytorch-lightning/Trainer/hooks/#optimizer_step)
###### Validation loop
######Validation loop
- [Check validation every n epochs](https://williamfalcon.github.io/pytorch-lightning/Trainer/Validation%20loop/#check-validation-every-n-epochs)
- [Hooks](https://williamfalcon.github.io/pytorch-lightning/Trainer/hooks/)
- [Set how much of the validation set to check](https://williamfalcon.github.io/pytorch-lightning/Trainer/Validation%20loop/#set-how-much-of-the-validation-set-to-check)
- [Set how much of the test set to check](https://williamfalcon.github.io/pytorch-lightning/Trainer/Validation%20loop/#set-how-much-of-the-test-set-to-check)
- [Set validation check frequency within 1 training epoch](https://williamfalcon.github.io/pytorch-lightning/Trainer/Validation%20loop/#set-validation-check-frequency-within-1-training-epoch)
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"""
To run this template just do:
python gan.py
After a few epochs, launch tensorboard to see the images being generated at every batch.
tensorboard --logdir default
"""
from argparse import ArgumentParser
import os
import numpy as np
import torchvision
import torchvision.transforms as transforms
from torchvision.datasets import MNIST
from torch.utils.data import DataLoader
import torch.nn as nn
import torch.nn.functional as F
import torch
import pytorch_lightning as pl
from test_tube import Experiment
class Generator(nn.Module):
def __init__(self, latent_dim, img_shape):
super(Generator, self).__init__()
self.img_shape = img_shape
def block(in_feat, out_feat, normalize=True):
layers = [nn.Linear(in_feat, out_feat)]
if normalize:
layers.append(nn.BatchNorm1d(out_feat, 0.8))
layers.append(nn.LeakyReLU(0.2, inplace=True))
return layers
self.model = nn.Sequential(
*block(latent_dim, 128, normalize=False),
*block(128, 256),
*block(256, 512),
*block(512, 1024),
nn.Linear(1024, int(np.prod(img_shape))),
nn.Tanh()
)
def forward(self, z):
img = self.model(z)
img = img.view(img.size(0), *self.img_shape)
return img
class Discriminator(nn.Module):
def __init__(self, img_shape):
super(Discriminator, self).__init__()
self.model = nn.Sequential(
nn.Linear(int(np.prod(img_shape)), 512),
nn.LeakyReLU(0.2, inplace=True),
nn.Linear(512, 256),
nn.LeakyReLU(0.2, inplace=True),
nn.Linear(256, 1),
nn.Sigmoid(),
)
def forward(self, img):
img_flat = img.view(img.size(0), -1)
validity = self.model(img_flat)
return validity
class GAN(pl.LightningModule):
def __init__(self, hparams):
super(GAN, self).__init__()
self.hparams = hparams
# networks
mnist_shape = (1, 28, 28)
self.generator = Generator(latent_dim=hparams.latent_dim, img_shape=mnist_shape)
self.discriminator = Discriminator(img_shape=mnist_shape)
# cache for generated images
self.generated_imgs = None
def forward(self, z):
return self.generator(z)
def adversarial_loss(self, y_hat, y):
return F.binary_cross_entropy(y_hat, y)
def training_step(self, batch, batch_nb, optimizer_i):
imgs, _ = batch
# train generator
if optimizer_i == 0:
# sample noise
z = torch.randn(imgs.shape[0], self.hparams.latent_dim)
# match gpu device (or keep as cpu)
if self.on_gpu:
z = z.cuda(imgs.device.index)
# generate images
self.generated_imgs = self.forward(z)
# log sampled images
sample_imgs = self.generated_imgs[:6]
grid = torchvision.utils.make_grid(sample_imgs)
self.experiment.add_image('generated_images', grid, 0)
# ground truth result (ie: all fake)
valid = torch.ones(imgs.size(0), 1)
# adversarial loss is binary cross-entropy
g_loss = self.adversarial_loss(self.discriminator(self.generated_imgs), valid)
return g_loss
# train discriminator
if optimizer_i == 1:
# Measure discriminator's ability to classify real from generated samples
# how well can it label as real?
valid = torch.ones(imgs.size(0), 1)
real_loss = self.adversarial_loss(self.discriminator(imgs), valid)
# how well can it label as fake?
fake = torch.zeros(imgs.size(0), 1)
fake_loss = self.adversarial_loss(self.discriminator(self.generated_imgs.detach()), fake)
# discriminator loss is the average of these
d_loss = (real_loss + fake_loss) / 2
return d_loss
def configure_optimizers(self):
lr = self.hparams.lr
b1 = self.hparams.b1
b2 = self.hparams.b2
opt_g = torch.optim.Adam(self.generator.parameters(), lr=lr, betas=(b1, b2))
opt_d = torch.optim.Adam(self.discriminator.parameters(), lr=lr, betas=(b1, b2))
return [opt_g, opt_d], []
@pl.data_loader
def tng_dataloader(self):
transform = transforms.Compose([transforms.ToTensor(),
transforms.Normalize([0.5], [0.5])])
dataset = MNIST(os.getcwd(), train=True, download=True, transform=transform)
return DataLoader(dataset, batch_size=self.hparams.batch_size)
def main(hparams):
# save tensorboard logs
exp = Experiment(save_dir=os.getcwd())
# init model
model = GAN(hparams)
# fit trainer on CPU
trainer = pl.Trainer(experiment=exp, max_nb_epochs=200)
trainer.fit(model)
if __name__ == '__main__':
parser = ArgumentParser()
parser.add_argument("--batch_size", type=int, default=64, help="size of the batches")
parser.add_argument("--lr", type=float, default=0.0002, help="adam: learning rate")
parser.add_argument("--b1", type=float, default=0.5, help="adam: decay of first order momentum of gradient")
parser.add_argument("--b2", type=float, default=0.999, help="adam: decay of first order momentum of gradient")
parser.add_argument("--latent_dim", type=int, default=100, help="dimensionality of the latent space")
hparams = parser.parse_args()
main(hparams)
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@@ -1,15 +1,10 @@
site_name: PyTorch lightning Documentation
site_name: Pytorch lightning Documentation
theme:
name: 'material'
docs_dir: docs
repo_url: https://github.com/williamFalcon/pytorch-lightning
site_dir: 'site'
site_description: 'Documentation for PyTorch LightningModule, the researcher version of keras.'
site_description: 'Documentation for Pytorch LightningModule, the researcher version of keras.'
dev_addr: '0.0.0.0:8000'
#google_analytics: ['UA-aasd', 'sitename']
markdown_extensions:
- codehilite:
guess_lang: false
linenums: true
+2 -8
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@@ -1,9 +1,3 @@
from .models.trainer import Trainer
from .models import Trainer
from .root_module.root_module import LightningModule
from .root_module.decorators import data_loader
__all__ = [
'Trainer',
'LightningModule',
'data_loader',
]
from .root_module.decorators import data_loader
+1 -6
View File
@@ -1,6 +1 @@
from .pt_callbacks import EarlyStopping, ModelCheckpoint
__all__ = [
'EarlyStopping',
'ModelCheckpoint',
]
from .pt_callbacks import EarlyStopping, ModelCheckpoint
+9 -10
View File
@@ -1,8 +1,5 @@
import os
import shutil
import numpy as np
import os, shutil
from pytorch_lightning.pt_overrides.override_data_parallel import LightningDistributedDataParallel
@@ -122,9 +119,9 @@ class EarlyStopping(Callback):
current = logs.get(self.monitor)
stop_training = False
if current is None:
print('Early stopping conditioned on metric `%s` '
'which is not available. Available metrics are: %s' %
(self.monitor, ','.join(list(logs.keys()))), RuntimeWarning)
print('Early stopping conditioned on metric `%s` ''which is not available. Available metrics are: %s' %
(self.monitor, ','.join(list(logs.keys()))), RuntimeWarning
)
exit(-1)
if self.monitor_op(current - self.min_delta, self.best):
@@ -188,7 +185,8 @@ class ModelCheckpoint(Callback):
if mode not in ['auto', 'min', 'max']:
print('ModelCheckpoint mode %s is unknown, '
'fallback to auto mode.' % (mode), RuntimeWarning)
'fallback to auto mode.' % (mode),
RuntimeWarning)
mode = 'auto'
if mode == 'min':
@@ -232,8 +230,8 @@ class ModelCheckpoint(Callback):
if self.save_best_only:
current = logs.get(self.monitor)
if current is None:
print('Can save best model only with %s available,'
' skipping.' % (self.monitor), RuntimeWarning)
print('Can save best model only with %s available, '
'skipping.' % (self.monitor), RuntimeWarning)
else:
if self.monitor_op(current, self.best):
if self.verbose > 0:
@@ -262,3 +260,4 @@ if __name__ == '__main__':
print(loss)
if should_stop:
break
@@ -1,5 +1 @@
from .new_project_templates.lightning_module_template import LightningTemplateModel
__all__ = [
'LightningTemplateModel'
]
from .new_project_templates.lightning_module_template import LightningTemplateModel
@@ -1,6 +1,3 @@
"""
Example template for defining a system
"""
import os
from collections import OrderedDict
import torch.nn as nn
@@ -13,7 +10,7 @@ from torch import optim
from torch.utils.data import DataLoader
from torch.utils.data.distributed import DistributedSampler
import pytorch_lightning as pl
import pytorch_lightning as ptl
from pytorch_lightning.root_module.root_module import LightningModule
@@ -47,13 +44,11 @@ class LightningTemplateModel(LightningModule):
Layout model
:return:
"""
self.c_d1 = nn.Linear(in_features=self.hparams.in_features,
out_features=self.hparams.hidden_dim)
self.c_d1 = nn.Linear(in_features=self.hparams.in_features, out_features=self.hparams.hidden_dim)
self.c_d1_bn = nn.BatchNorm1d(self.hparams.hidden_dim)
self.c_d1_drop = nn.Dropout(self.hparams.drop_prob)
self.c_d2 = nn.Linear(in_features=self.hparams.hidden_dim,
out_features=self.hparams.out_features)
self.c_d2 = nn.Linear(in_features=self.hparams.hidden_dim, out_features=self.hparams.out_features)
# ---------------------
# TRAINING
@@ -151,23 +146,12 @@ class LightningTemplateModel(LightningModule):
val_loss_mean = 0
val_acc_mean = 0
for output in outputs:
val_loss = output['val_loss']
# reduce manually when using dp
if self.trainer.use_dp:
val_loss = torch.mean(val_loss)
val_loss_mean += val_loss
# reduce manually when using dp
val_acc = output['val_acc']
if self.trainer.use_dp:
val_acc = torch.mean(val_acc)
val_acc_mean += val_acc
val_loss_mean += output['val_loss']
val_acc_mean += output['val_acc']
val_loss_mean /= len(outputs)
val_acc_mean /= len(outputs)
tqdm_dic = {'val_loss': val_loss_mean, 'val_acc': val_acc_mean}
tqdm_dic = {'val_loss': val_loss_mean.item(), 'val_acc': val_acc_mean.item()}
return tqdm_dic
# ---------------------
@@ -179,23 +163,23 @@ class LightningTemplateModel(LightningModule):
:return: list of optimizers
"""
optimizer = optim.Adam(self.parameters(), lr=self.hparams.learning_rate)
scheduler = optim.lr_scheduler.CosineAnnealingLR(optimizer, T_max=10)
return [optimizer], [scheduler]
return [optimizer]
def __dataloader(self, train):
# init data generators
transform = transforms.Compose([transforms.ToTensor(),
transforms.Normalize((0.5,), (1.0,))])
dataset = MNIST(root=self.hparams.data_root, train=train,
transform=transform, download=True)
transform = transforms.Compose([transforms.ToTensor(), transforms.Normalize((0.5,), (1.0,))])
dataset = MNIST(root=self.hparams.data_root, train=train, transform=transform, download=True)
# when using multi-node (ddp) we need to add the datasampler
# when using multi-node we need to add the datasampler
train_sampler = None
batch_size = self.hparams.batch_size
if self.use_ddp:
train_sampler = DistributedSampler(dataset, rank=self.trainer.proc_rank)
batch_size = batch_size // self.trainer.world_size # scale batch size
try:
if self.on_gpu:
train_sampler = DistributedSampler(dataset, rank=self.trainer.proc_rank)
batch_size = batch_size // self.trainer.world_size # scale batch size
except Exception as e:
pass
should_shuffle = train_sampler is None
loader = DataLoader(
@@ -207,23 +191,23 @@ class LightningTemplateModel(LightningModule):
return loader
@pl.data_loader
@ptl.data_loader
def tng_dataloader(self):
print('tng data loader called')
return self.__dataloader(train=True)
@pl.data_loader
@ptl.data_loader
def val_dataloader(self):
print('val data loader called')
return self.__dataloader(train=False)
@pl.data_loader
@ptl.data_loader
def test_dataloader(self):
print('test data loader called')
return self.__dataloader(train=False)
@staticmethod
def add_model_specific_args(parent_parser, root_dir): # pragma: no cover
def add_model_specific_args(parent_parser, root_dir): # pragma: no cover
"""
Parameters you define here will be available to your model through self.hparams
:param parent_parser:
@@ -236,25 +220,20 @@ class LightningTemplateModel(LightningModule):
# parser.set_defaults(gradient_clip=5.0)
# network params
parser.add_argument('--in_features', default=28 * 28, type=int)
parser.add_argument('--out_features', default=10, type=int)
# use 500 for CPU, 50000 for GPU to see speed difference
parser.add_argument('--hidden_dim', default=50000, type=int)
parser.opt_list('--drop_prob', default=0.2, options=[0.2, 0.5], type=float, tunable=False)
parser.add_argument('--in_features', default=28*28, type=int)
parser.add_argument('--out_features', default=10, type=int)
parser.add_argument('--hidden_dim', default=50000, type=int) # use 500 for CPU, 50000 for GPU to see speed difference
# data
parser.add_argument('--data_root', default=os.path.join(root_dir, 'mnist'), type=str)
# training params (opt)
parser.opt_list('--learning_rate', default=0.001 * 8, type=float,
options=[0.0001, 0.0005, 0.001, 0.005],
parser.opt_list('--learning_rate', default=0.001*8, type=float, options=[0.0001, 0.0005, 0.001, 0.005],
tunable=False)
parser.opt_list('--optimizer_name', default='adam', type=str,
options=['adam'], tunable=False)
parser.opt_list('--optimizer_name', default='adam', type=str, options=['adam'], tunable=False)
# if using 2 nodes with 4 gpus each the batch size here
# (256) will be 256 / (2*8) = 16 per gpu
parser.opt_list('--batch_size', default=256 * 8, type=int,
options=[32, 64, 128, 256], tunable=False,
help='batch size will be divided over all gpus being used across all nodes')
# if using 2 nodes with 4 gpus each the batch size here (256) will be 256 / (2*8) = 16 per gpu
parser.opt_list('--batch_size', default=256*8, type=int, options=[32, 64, 128, 256], tunable=False,
help='batch size will be divided over all the gpus being used across all nodes')
return parser
@@ -1,21 +1,31 @@
"""
Multi-node example (GPU)
"""
import os
import sys
import numpy as np
from time import sleep
import torch
from test_tube import HyperOptArgumentParser, Experiment, SlurmCluster
from pytorch_lightning.models.trainer import Trainer
from pytorch_lightning.callbacks import EarlyStopping, ModelCheckpoint
from pytorch_lightning.utils.arg_parse import add_default_args
from examples.new_project_templates.lightning_module_template import LightningTemplateModel
from pytorch_lightning.callbacks import EarlyStopping, ModelCheckpoint
SEED = 2334
torch.manual_seed(SEED)
np.random.seed(SEED)
# ---------------------
# DEFINE MODEL HERE
# ---------------------
from lightning_module_template import LightningTemplateModel
# ---------------------
"""
Allows training by using command line arguments
Run by:
# TYPE YOUR RUN COMMAND HERE
"""
def main_local(hparams):
main(hparams, None, None)
@@ -112,10 +122,8 @@ def optimize_on_cluster(hyperparams):
cluster.add_command('source activate lightning')
# run only on 32GB voltas
cluster.add_slurm_cmd(cmd='constraint', value='volta32gb',
comment='use 32gb gpus')
cluster.add_slurm_cmd(cmd='partition', value=hyperparams.gpu_partition,
comment='use 32gb gpus')
cluster.add_slurm_cmd(cmd='constraint', value='volta32gb', comment='use 32gb gpus')
cluster.add_slurm_cmd(cmd='partition', value=hyperparams.gpu_partition, comment='use 32gb gpus')
# run hopt
# creates and submits jobs to slurm
@@ -142,23 +150,15 @@ if __name__ == '__main__':
parent_parser.add_argument('--gpu_partition', type=str, help='consult your cluster manual')
# TODO: make 1 param
parent_parser.add_argument('--per_experiment_nb_gpus', type=int,
help='how many gpus to use in a node')
parent_parser.add_argument('--gpus', type=str, default='-1',
help='how many gpus to use in the node')
parent_parser.add_argument('--per_experiment_nb_gpus', type=int, help='how many gpus to use in a node')
parent_parser.add_argument('--gpus', type=str, default='-1', help='how many gpus to use in the node')
parent_parser.add_argument('--nb_gpu_nodes', type=int, default=1,
help='how many nodes to use in a cluster')
parent_parser.add_argument('--test_tube_save_path', type=str, default=test_tube_dir,
help='where to save logs')
parent_parser.add_argument('--slurm_log_path', type=str, default=slurm_out_dir,
help='where to save slurm meta')
parent_parser.add_argument('--model_save_path', type=str, default=checkpoint_dir,
help='where to save model')
parent_parser.add_argument('--experiment_name', type=str, default='pt_lightning_exp_a',
help='test tube exp name')
parent_parser.add_argument('--nb_hopt_trials', type=int, default=1,
help='how many grid search trials to run')
parent_parser.add_argument('--nb_gpu_nodes', type=int, default=1, help='how many nodes to use in a cluster')
parent_parser.add_argument('--test_tube_save_path', type=str, default=test_tube_dir, help='where to save logs')
parent_parser.add_argument('--slurm_log_path', type=str, default=slurm_out_dir, help='where to save slurm meta')
parent_parser.add_argument('--model_save_path', type=str, default=checkpoint_dir, help='where to save model')
parent_parser.add_argument('--experiment_name', type=str, default='pt_lightning_exp_a', help='test tube exp name')
parent_parser.add_argument('--nb_hopt_trials', type=int, default=1, help='how many grid search trials to run')
# allow model to overwrite or extend args
parser = LightningTemplateModel.add_model_specific_args(parent_parser, root_dir)
@@ -1,20 +1,24 @@
"""
Runs a model on a single node on CPU only..
Runs a model on a single node across N-gpus.
"""
import os
import sys
import numpy as np
from time import sleep
import torch
from test_tube import HyperOptArgumentParser, Experiment
from test_tube import HyperOptArgumentParser, Experiment, SlurmCluster
from pytorch_lightning.models.trainer import Trainer
from pytorch_lightning.callbacks import EarlyStopping, ModelCheckpoint
from pytorch_lightning.utils.arg_parse import add_default_args
from examples.new_project_templates.lightning_module_template import LightningTemplateModel
from pytorch_lightning.callbacks import EarlyStopping, ModelCheckpoint
SEED = 2334
torch.manual_seed(SEED)
np.random.seed(SEED)
from lightning_module_template import LightningTemplateModel
def main(hparams):
"""
@@ -90,12 +94,9 @@ if __name__ == '__main__':
parent_parser = HyperOptArgumentParser(strategy='grid_search', add_help=False)
# gpu args
parent_parser.add_argument('--test_tube_save_path', type=str,
default=test_tube_dir, help='where to save logs')
parent_parser.add_argument('--model_save_path', type=str,
default=checkpoint_dir, help='where to save model')
parent_parser.add_argument('--experiment_name', type=str,
default='pt_lightning_exp_a', help='test tube exp name')
parent_parser.add_argument('--test_tube_save_path', type=str, default=test_tube_dir, help='where to save logs')
parent_parser.add_argument('--model_save_path', type=str, default=checkpoint_dir, help='where to save model')
parent_parser.add_argument('--experiment_name', type=str, default='pt_lightning_exp_a', help='test tube exp name')
# allow model to overwrite or extend args
parser = LightningTemplateModel.add_model_specific_args(parent_parser, root_dir)
@@ -105,5 +106,5 @@ if __name__ == '__main__':
# RUN TRAINING
# ---------------------
# run on HPC cluster
print('RUNNING ON CPU')
print(f'RUNNING ON CPU')
main(hyperparams)
@@ -1,20 +1,24 @@
"""
16-bit single node, CPU example
Runs a model on a single node across N-gpus.
"""
import os
import sys
import numpy as np
from time import sleep
import torch
from test_tube import HyperOptArgumentParser, Experiment
from test_tube import HyperOptArgumentParser, Experiment, SlurmCluster
from pytorch_lightning.models.trainer import Trainer
from pytorch_lightning.callbacks import EarlyStopping, ModelCheckpoint
from pytorch_lightning.utils.arg_parse import add_default_args
from examples.new_project_templates.lightning_module_template import LightningTemplateModel
from pytorch_lightning.callbacks import EarlyStopping, ModelCheckpoint
SEED = 2334
torch.manual_seed(SEED)
np.random.seed(SEED)
from lightning_module_template import LightningTemplateModel
def main(hparams):
"""
@@ -92,15 +96,10 @@ if __name__ == '__main__':
parent_parser = HyperOptArgumentParser(strategy='grid_search', add_help=False)
# gpu args
parent_parser.add_argument('--gpus', type=str, default='-1',
help='how many gpus to use in the node.'
'value -1 uses all the gpus on the node')
parent_parser.add_argument('--test_tube_save_path', type=str, default=test_tube_dir,
help='where to save logs')
parent_parser.add_argument('--model_save_path', type=str, default=checkpoint_dir,
help='where to save model')
parent_parser.add_argument('--experiment_name', type=str, default='pt_lightning_exp_a',
help='test tube exp name')
parent_parser.add_argument('--gpus', type=str, default='-1', help='how many gpus to use in the node. -1 uses all the gpus on the node')
parent_parser.add_argument('--test_tube_save_path', type=str, default=test_tube_dir, help='where to save logs')
parent_parser.add_argument('--model_save_path', type=str, default=checkpoint_dir, help='where to save model')
parent_parser.add_argument('--experiment_name', type=str, default='pt_lightning_exp_a', help='test tube exp name')
# allow model to overwrite or extend args
parser = LightningTemplateModel.add_model_specific_args(parent_parser, root_dir)
@@ -1,20 +1,24 @@
"""
Runs a model on a single node across N-gpus using dataParallel
Runs a model on a single node across N-gpus.
"""
import os
import sys
import numpy as np
from time import sleep
import torch
from test_tube import HyperOptArgumentParser, Experiment
from test_tube import HyperOptArgumentParser, Experiment, SlurmCluster
from pytorch_lightning.models.trainer import Trainer
from pytorch_lightning.callbacks import EarlyStopping, ModelCheckpoint
from pytorch_lightning.utils.arg_parse import add_default_args
from examples.new_project_templates.lightning_module_template import LightningTemplateModel
from pytorch_lightning.callbacks import EarlyStopping, ModelCheckpoint
SEED = 2334
torch.manual_seed(SEED)
np.random.seed(SEED)
from lightning_module_template import LightningTemplateModel
def main(hparams):
"""
@@ -91,15 +95,10 @@ if __name__ == '__main__':
parent_parser = HyperOptArgumentParser(strategy='grid_search', add_help=False)
# gpu args
parent_parser.add_argument('--gpus', type=str, default='-1',
help='how many gpus to use in the node.'
' value -1 uses all the gpus on the node')
parent_parser.add_argument('--test_tube_save_path', type=str, default=test_tube_dir,
help='where to save logs')
parent_parser.add_argument('--model_save_path', type=str, default=checkpoint_dir,
help='where to save model')
parent_parser.add_argument('--experiment_name', type=str, default='pt_lightning_exp_a',
help='test tube exp name')
parent_parser.add_argument('--gpus', type=str, default='-1', help='how many gpus to use in the node. -1 uses all the gpus on the node')
parent_parser.add_argument('--test_tube_save_path', type=str, default=test_tube_dir, help='where to save logs')
parent_parser.add_argument('--model_save_path', type=str, default=checkpoint_dir, help='where to save model')
parent_parser.add_argument('--experiment_name', type=str, default='pt_lightning_exp_a', help='test tube exp name')
# allow model to overwrite or extend args
parser = LightningTemplateModel.add_model_specific_args(parent_parser, root_dir)
@@ -2,19 +2,23 @@
Runs a model on a single node across N-gpus.
"""
import os
import sys
import numpy as np
from time import sleep
import torch
from test_tube import HyperOptArgumentParser, Experiment
from test_tube import HyperOptArgumentParser, Experiment, SlurmCluster
from pytorch_lightning.models.trainer import Trainer
from pytorch_lightning.callbacks import EarlyStopping, ModelCheckpoint
from pytorch_lightning.utils.arg_parse import add_default_args
from examples.new_project_templates.lightning_module_template import LightningTemplateModel
from pytorch_lightning.callbacks import EarlyStopping, ModelCheckpoint
SEED = 2334
torch.manual_seed(SEED)
np.random.seed(SEED)
from lightning_module_template import LightningTemplateModel
def main(hparams):
"""
@@ -71,7 +75,6 @@ def main(hparams):
checkpoint_callback=checkpoint,
early_stop_callback=early_stop,
gpus=hparams.gpus,
distributed_backend='ddp'
)
# ------------------------
@@ -92,15 +95,10 @@ if __name__ == '__main__':
parent_parser = HyperOptArgumentParser(strategy='grid_search', add_help=False)
# gpu args
parent_parser.add_argument('--gpus', type=str, default='-1',
help='how many gpus to use in the node.'
' value -1 uses all the gpus on the node')
parent_parser.add_argument('--test_tube_save_path', type=str, default=test_tube_dir,
help='where to save logs')
parent_parser.add_argument('--model_save_path', type=str, default=checkpoint_dir,
help='where to save model')
parent_parser.add_argument('--experiment_name', type=str, default='pt_lightning_exp_a',
help='test tube exp name')
parent_parser.add_argument('--gpus', type=str, default='-1', help='how many gpus to use in the node. -1 uses all the gpus on the node')
parent_parser.add_argument('--test_tube_save_path', type=str, default=test_tube_dir, help='where to save logs')
parent_parser.add_argument('--model_save_path', type=str, default=checkpoint_dir, help='where to save model')
parent_parser.add_argument('--experiment_name', type=str, default='pt_lightning_exp_a', help='test tube exp name')
# allow model to overwrite or extend args
parser = LightningTemplateModel.add_model_specific_args(parent_parser, root_dir)
@@ -0,0 +1,112 @@
"""
Runs a model on a single node across N-gpus.
"""
import os
import sys
import numpy as np
from time import sleep
import torch
from test_tube import HyperOptArgumentParser, Experiment, SlurmCluster
from pytorch_lightning.models.trainer import Trainer
from pytorch_lightning.utils.arg_parse import add_default_args
from pytorch_lightning.callbacks import EarlyStopping, ModelCheckpoint
SEED = 2334
torch.manual_seed(SEED)
np.random.seed(SEED)
from lightning_module_template import LightningTemplateModel
def main(hparams):
"""
Main training routine specific for this project
:param hparams:
:return:
"""
# ------------------------
# 1 INIT LIGHTNING MODEL
# ------------------------
print('loading model...')
model = LightningTemplateModel(hparams)
print('model built')
# ------------------------
# 2 INIT TEST TUBE EXP
# ------------------------
# init experiment
exp = Experiment(
name=hyperparams.experiment_name,
save_dir=hyperparams.test_tube_save_path,
autosave=False,
description='test demo'
)
exp.argparse(hparams)
exp.save()
# ------------------------
# 3 DEFINE CALLBACKS
# ------------------------
model_save_path = '{}/{}/{}'.format(hparams.model_save_path, exp.name, exp.version)
early_stop = EarlyStopping(
monitor='val_acc',
patience=3,
verbose=True,
mode='max'
)
checkpoint = ModelCheckpoint(
filepath=model_save_path,
save_best_only=True,
verbose=True,
monitor='val_loss',
mode='min'
)
# ------------------------
# 4 INIT TRAINER
# ------------------------
trainer = Trainer(
experiment=exp,
checkpoint_callback=checkpoint,
early_stop_callback=early_stop,
gpus=hparams.gpus,
)
# ------------------------
# 5 START TRAINING
# ------------------------
trainer.fit(model)
if __name__ == '__main__':
# dirs
root_dir = os.path.dirname(os.path.realpath(__file__))
demo_log_dir = os.path.join(root_dir, 'pt_lightning_demo_logs')
checkpoint_dir = os.path.join(demo_log_dir, 'model_weights')
test_tube_dir = os.path.join(demo_log_dir, 'test_tube_data')
# although we user hyperOptParser, we are using it only as argparse right now
parent_parser = HyperOptArgumentParser(strategy='grid_search', add_help=False)
# gpu args
parent_parser.add_argument('--gpus', type=str, default='0', help='how many gpus to use in the node. -1 uses all the gpus on the node')
parent_parser.add_argument('--test_tube_save_path', type=str, default=test_tube_dir, help='where to save logs')
parent_parser.add_argument('--model_save_path', type=str, default=checkpoint_dir, help='where to save model')
parent_parser.add_argument('--experiment_name', type=str, default='pt_lightning_exp_a', help='test tube exp name')
# allow model to overwrite or extend args
parser = LightningTemplateModel.add_model_specific_args(parent_parser, root_dir)
hyperparams = parser.parse_args()
# ---------------------
# RUN TRAINING
# ---------------------
# run on HPC cluster
print(f'RUNNING INTERACTIVE MODE ON GPUS. gpu ids: {hyperparams.gpus}')
main(hyperparams)
@@ -3,10 +3,9 @@ import sys
from test_tube import HyperOptArgumentParser, Experiment
from pytorch_lightning.models.trainer import Trainer
from pytorch_lightning.utilities.arg_parse import add_default_args
from pytorch_lightning.utils.arg_parse import add_default_args
from pytorch_lightning.callbacks.pt_callbacks import EarlyStopping, ModelCheckpoint
from examples.new_project_templates.lightning_module_template import LightningTemplateModel
from docs.source.examples.example_model import ExampleModel
def main(hparams):
@@ -29,7 +28,7 @@ def main(hparams):
exp.save()
# build model
model = LightningTemplateModel(hparams)
model = ExampleModel(hparams)
# callbacks
early_stop = EarlyStopping(
@@ -67,7 +66,7 @@ if __name__ == '__main__':
add_default_args(parent_parser, root_dir)
# allow model to overwrite or extend args
parser = LightningTemplateModel.add_model_specific_args(parent_parser)
parser = ExampleModel.add_model_specific_args(parent_parser)
hyperparams = parser.parse_args()
# train model
+1
View File
@@ -0,0 +1 @@
from .trainer import Trainer
File diff suppressed because it is too large Load Diff
@@ -6,6 +6,7 @@ from itertools import chain
import threading
import torch
from torch.cuda._utils import _get_device_index
import pdb
def _find_tensors(obj): # pragma: no cover
@@ -63,6 +64,7 @@ class LightningDataParallel(DataParallel):
outputs = self.parallel_apply(replicas, inputs, kwargs)
return self.gather(outputs, self.output_device)
def parallel_apply(self, replicas, inputs, kwargs):
return parallel_apply(replicas, inputs, kwargs, self.device_ids[:len(replicas)])
+3 -14
View File
@@ -1,5 +1,3 @@
import traceback
def data_loader(fn):
"""
@@ -12,17 +10,8 @@ def data_loader(fn):
@property
def _data_loader(self):
try:
value = getattr(self, attr_name)
except AttributeError:
try:
value = fn(self) # Lazy evaluation, done only once.
except AttributeError as e:
# Guard against AttributeError suppression. (Issue #142)
traceback.print_exc()
error = f'{fn.__name__}: An AttributeError was encountered: ' + str(e)
raise RuntimeError(error) from e
setattr(self, attr_name, value) # Memoize evaluation.
return value
if not hasattr(self, attr_name):
setattr(self, attr_name, fn(self))
return getattr(self, attr_name)
return _data_loader
+7 -7
View File
@@ -1,9 +1,10 @@
import numpy as np
from torch import nn
"""
Module to describe gradients
"""
from torch import nn
class GradInformation(nn.Module):
@@ -17,13 +18,12 @@ class GradInformation(nn.Module):
total_norm += param_norm ** norm_type
norm = param_norm ** (1 / norm_type)
grad = round(norm.data.cpu().numpy().flatten()[0], 3)
results['grad_{}_norm_{}'.format(norm_type, i)] = grad
except Exception:
results['grad_{}_norm_{}'.format(norm_type, i)] = round(norm.data.cpu().numpy().flatten()[0], 3)
except Exception as e:
# this param had no grad
pass
total_norm = total_norm ** (1. / norm_type)
grad = round(total_norm.data.cpu().numpy().flatten()[0], 3)
results['grad_{}_norm_total'.format(norm_type)] = grad
results['grad_{}_norm_total'.format(norm_type)] = round(total_norm.data.cpu().numpy().flatten()[0], 3)
return results
+1 -9
View File
@@ -1,15 +1,6 @@
import torch
class ModelHooks(torch.nn.Module):
def on_sanity_check_start(self):
"""
Called before starting validate
:return:
"""
pass
def on_batch_start(self, data_batch):
pass
@@ -51,3 +42,4 @@ class ModelHooks(torch.nn.Module):
:return:
"""
pass
+13 -13
View File
@@ -1,15 +1,15 @@
'''
Generates a summary of a model's layers and dimensionality
'''
import gc
import torch
import gc
import subprocess
import numpy as np
import pandas as pd
'''
Generates a summary of a model's layers and dimensionality
'''
class ModelSummary(object):
def __init__(self, model):
@@ -94,7 +94,7 @@ class ModelSummary(object):
mods = list(self.model.modules())
sizes = []
for i in range(1, len(mods)):
for i in range(1,len(mods)):
m = mods[i]
p = list(m.parameters())
modsz = []
@@ -127,7 +127,7 @@ class ModelSummary(object):
if self.model.example_input_array is not None:
cols.extend(['In_sizes', 'Out_sizes'])
df = pd.DataFrame(np.zeros((len(self.layer_names), len(cols))))
df = pd.DataFrame(np.zeros( (len(self.layer_names), len(cols))))
df.columns = cols
df['Name'] = self.layer_names
@@ -152,16 +152,16 @@ class ModelSummary(object):
self.make_summary()
def print_mem_stack(): # pragma: no cover
def print_mem_stack(): # pragma: no cover
for obj in gc.get_objects():
try:
if torch.is_tensor(obj) or (hasattr(obj, 'data') and torch.is_tensor(obj.data)):
print(type(obj), obj.size())
except Exception:
except Exception as e:
pass
def count_mem_items(): # pragma: no cover
def count_mem_items(): # pragma: no cover
nb_params = 0
nb_tensors = 0
for obj in gc.get_objects():
@@ -172,7 +172,7 @@ def count_mem_items(): # pragma: no cover
nb_params += 1
else:
nb_tensors += 1
except Exception:
except Exception as e:
pass
return nb_params, nb_tensors
@@ -196,6 +196,6 @@ def get_gpu_memory_map():
gpu_memory = [int(x) for x in result.strip().split('\n')]
gpu_memory_map = {}
for k, v in zip(range(len(gpu_memory)), gpu_memory):
k = 'gpu_%i' % k
k = f'gpu_{k}'
gpu_memory_map[k] = v
return gpu_memory_map
+14 -49
View File
@@ -1,10 +1,8 @@
import torch
import os
import re
import torch
from pytorch_lightning.pt_overrides.override_data_parallel import (
LightningDistributedDataParallel, LightningDataParallel)
import pdb
from pytorch_lightning.pt_overrides.override_data_parallel import LightningDistributedDataParallel, LightningDataParallel
class ModelIO(object):
@@ -46,8 +44,7 @@ class ModelIO(object):
class TrainerIO(object):
def __get_model(self):
is_dp_module = isinstance(self.model, (LightningDistributedDataParallel,
LightningDataParallel))
is_dp_module = type(self.model) is LightningDistributedDataParallel or type(self.model) is LightningDataParallel
model = self.model.module if is_dp_module else self.model
return model
@@ -60,22 +57,6 @@ class TrainerIO(object):
# do the actual save
torch.save(checkpoint, filepath)
def restore(self, checkpoint_path, on_gpu):
if on_gpu:
checkpoint = torch.load(checkpoint_path)
else:
checkpoint = torch.load(checkpoint_path, map_location=lambda storage, loc: storage)
# load training state (affects trainer only)
self.restore_training_state(checkpoint)
# load model state
model = self.__get_model()
# load the state_dict on the model automatically
model.load_state_dict(checkpoint['state_dict'])
def dump_checkpoint(self):
checkpoint = {
@@ -90,20 +71,12 @@ class TrainerIO(object):
checkpoint['early_stop_callback_wait'] = self.early_stop_callback.wait
checkpoint['early_stop_callback_patience'] = self.early_stop_callback.patience
# save optimizers
optimizer_states = []
for i, optimizer in enumerate(self.optimizers):
optimizer_states.append(optimizer.state_dict())
checkpoint['optimizer_states'] = optimizer_states
# save lr schedulers
lr_schedulers = []
for i, scheduler in enumerate(self.lr_schedulers):
lr_schedulers.append(scheduler.state_dict())
checkpoint['lr_schedulers'] = lr_schedulers
# add the state_dict from the model
model = self.__get_model()
checkpoint['state_dict'] = model.state_dict()
@@ -121,16 +94,13 @@ class TrainerIO(object):
return
# allow test tube to handle model check pointing automatically
# only if proc 0 so we don't trigger world_size resubmits
if self.proc_rank == 0:
self.cluster.set_checkpoint_save_function(
self.hpc_save,
kwargs={
'folderpath': self.checkpoint_callback.filepath,
'experiment': self.experiment
}
)
self.cluster.set_checkpoint_save_function(
self.hpc_save,
kwargs={
'folderpath': self.checkpoint_callback.filepath,
'experiment': self.experiment
}
)
self.cluster.set_checkpoint_load_function(
self.hpc_load,
kwargs={
@@ -161,11 +131,6 @@ class TrainerIO(object):
for optimizer, opt_state in zip(self.optimizers, optimizer_states):
optimizer.load_state_dict(opt_state)
# restore the lr schedulers
lr_schedulers = checkpoint['lr_schedulers']
for scheduler, lrs_state in zip(self.lr_schedulers, lr_schedulers):
scheduler.load_state_dict(lrs_state)
# ----------------------------------
# PRIVATE OPS
# ----------------------------------
@@ -216,15 +181,15 @@ class TrainerIO(object):
# call model hook
model.on_hpc_load(checkpoint)
def max_ckpt_in_folder(self, path, name_key='ckpt_'):
def max_ckpt_in_folder(self, path):
files = os.listdir(path)
files = [x for x in files if name_key in x]
files = [x for x in files if 'ckpt_' in x]
if len(files) == 0:
return 0
ckpt_vs = []
for name in files:
name = name.split(name_key)[-1]
name = name.split('ckpt_')[-1]
name = re.sub('[^0-9]', '', name)
ckpt_vs.append(int(name))
+18 -37
View File
@@ -1,5 +1,4 @@
import torch
from pytorch_lightning.root_module.memory import ModelSummary
from pytorch_lightning.root_module.grads import GradInformation
from pytorch_lightning.root_module.model_saving import ModelIO, load_hparams_from_tags_csv
@@ -23,9 +22,6 @@ class LightningModule(GradInformation, ModelIO, ModelHooks):
# track if gpu was requested for checkpointing
self.on_gpu = False
self.use_dp = False
self.use_ddp = False
self.use_amp = False
def forward(self, *args, **kwargs):
"""
@@ -36,59 +32,41 @@ class LightningModule(GradInformation, ModelIO, ModelHooks):
"""
raise NotImplementedError
def training_step(self, *args, **kwargs):
def validation_step(self, data_batch, batch_nb):
"""
return loss, dict with metrics for tqdm
:param called with batch, batch_nb
additional: optimizer_i if multiple optimizers used
return whatever outputs will need to be aggregated in validation_end
:param data_batch:
:return:
"""
raise NotImplementedError
def validation_step(self, *args, **kwargs):
"""
return whatever outputs will need to be aggregated in validation_end
OPTIONAL
:param called with batch, batch_nb
additional: dataset_i if multiple val datasets used
:return:
"""
pass
def validation_end(self, outputs):
"""
Outputs has the appended output after each validation step
OPTIONAL
:param outputs:
:return: dic_with_metrics for tqdm
"""
pass
raise NotImplementedError
def configure_optimizers(self):
def training_step(self, data_batch, batch_nb):
"""
Return a list of optimizers and a list of schedulers (could be empty)
return loss, dict with metrics for tqdm
:param data_batch:
:return:
"""
raise NotImplementedError
def optimizer_step(self, epoch_nb, batch_nb, optimizer, optimizer_i):
def configure_optimizers(self):
"""
Do something instead of the standard optimizer behavior
:param epoch_nb:
:param batch_nb:
:param optimizer:
:param optimizer_i:
Return array of optimizers
:return:
"""
optimizer.step()
# clear gradients
optimizer.zero_grad()
raise NotImplementedError
@data_loader
def tng_dataloader(self):
"""
Implement a PyTorch DataLoader
Implement a function to load an h5py of this data
:return:
"""
raise NotImplementedError
@@ -96,18 +74,18 @@ class LightningModule(GradInformation, ModelIO, ModelHooks):
@data_loader
def test_dataloader(self):
"""
Implement a PyTorch DataLoader
Implement a function to load an h5py of this data
:return:
"""
return None
raise NotImplementedError
@data_loader
def val_dataloader(self):
"""
Implement a PyTorch DataLoader
Implement a function to load an h5py of this data
:return:
"""
return None
raise NotImplementedError
@classmethod
def load_from_metrics(cls, weights_path, tags_csv, on_gpu, map_location=None):
@@ -150,3 +128,6 @@ class LightningModule(GradInformation, ModelIO, ModelHooks):
def unfreeze(self):
for param in self.parameters():
param.requires_grad = True
-3
View File
@@ -1,3 +0,0 @@
from .lm_test_module import LightningTestModel
from .no_val_end_module import NoValEndTestModel
from .no_val_module import NoValModel
@@ -1,247 +0,0 @@
import os
from collections import OrderedDict
import torch
import torch.nn as nn
import torch.nn.functional as F
from torch import optim
from torch.utils.data import DataLoader
from torch.utils.data.distributed import DistributedSampler
from torchvision.datasets import MNIST
from torchvision import transforms
from test_tube import HyperOptArgumentParser
from pytorch_lightning.root_module.root_module import LightningModule
from pytorch_lightning import data_loader
class NoValEndTestModel(LightningModule):
"""
Sample model to show how to define a template
"""
def __init__(self, hparams, force_remove_distributed_sampler=False):
"""
Pass in parsed HyperOptArgumentParser to the model
:param hparams:
"""
# init superclass
super(NoValEndTestModel, self).__init__()
self.hparams = hparams
self.batch_size = hparams.batch_size
# if you specify an example input, the summary will show input/output for each layer
self.example_input_array = torch.rand(5, 28 * 28)
# remove to test warning for dist sampler
self.force_remove_distributed_sampler = force_remove_distributed_sampler
# build model
self.__build_model()
# ---------------------
# MODEL SETUP
# ---------------------
def __build_model(self):
"""
Layout model
:return:
"""
self.c_d1 = nn.Linear(in_features=self.hparams.in_features,
out_features=self.hparams.hidden_dim)
self.c_d1_bn = nn.BatchNorm1d(self.hparams.hidden_dim)
self.c_d1_drop = nn.Dropout(self.hparams.drop_prob)
self.c_d2 = nn.Linear(in_features=self.hparams.hidden_dim,
out_features=self.hparams.out_features)
# ---------------------
# TRAINING
# ---------------------
def forward(self, x):
"""
No special modification required for lightning, define as you normally would
:param x:
:return:
"""
x = self.c_d1(x)
x = torch.tanh(x)
x = self.c_d1_bn(x)
x = self.c_d1_drop(x)
x = self.c_d2(x)
logits = F.log_softmax(x, dim=1)
return logits
def loss(self, labels, logits):
nll = F.nll_loss(logits, labels)
return nll
def training_step(self, data_batch, batch_i):
"""
Lightning calls this inside the training loop
:param data_batch:
:return:
"""
# forward pass
x, y = data_batch
x = x.view(x.size(0), -1)
y_hat = self.forward(x)
# calculate loss
loss_val = self.loss(y, y_hat)
# in DP mode (default) make sure if result is scalar, there's another dim in the beginning
if self.trainer.use_dp:
loss_val = loss_val.unsqueeze(0)
# alternate possible outputs to test
if self.trainer.batch_nb % 1 == 0:
output = OrderedDict({
'loss': loss_val,
'prog': {'some_val': loss_val * loss_val}
})
return output
if self.trainer.batch_nb % 2 == 0:
return loss_val
def validation_step(self, data_batch, batch_nb):
"""
Lightning calls this inside the validation loop
:param data_batch:
:return:
"""
x, y = data_batch
x = x.view(x.size(0), -1)
y_hat = self.forward(x)
loss_val = self.loss(y, y_hat)
# acc
labels_hat = torch.argmax(y_hat, dim=1)
val_acc = torch.sum(y == labels_hat).item() / (len(y) * 1.0)
val_acc = torch.tensor(val_acc)
if self.on_gpu:
val_acc = val_acc.cuda(loss_val.device.index)
# in DP mode (default) make sure if result is scalar, there's another dim in the beginning
if self.trainer.use_dp:
loss_val = loss_val.unsqueeze(0)
val_acc = val_acc.unsqueeze(0)
# alternate possible outputs to test
if batch_nb % 1 == 0:
output = OrderedDict({
'val_loss': loss_val,
'val_acc': val_acc,
})
return output
if batch_nb % 2 == 0:
return val_acc
if batch_nb % 3 == 0:
output = OrderedDict({
'val_loss': loss_val,
'val_acc': val_acc,
'test_dic': {'val_loss_a': loss_val}
})
return output
def on_tng_metrics(self, logs):
logs['some_tensor_to_test'] = torch.rand(1)
# ---------------------
# TRAINING SETUP
# ---------------------
def configure_optimizers(self):
"""
return whatever optimizers we want here
:return: list of optimizers
"""
# try no scheduler for this model (testing purposes)
optimizer = optim.Adam(self.parameters(), lr=self.hparams.learning_rate)
# test returning only 1 list instead of 2
return [optimizer]
def __dataloader(self, train):
# init data generators
transform = transforms.Compose([transforms.ToTensor(),
transforms.Normalize((0.5,), (1.0,))])
dataset = MNIST(root=self.hparams.data_root, train=train,
transform=transform, download=True)
# when using multi-node we need to add the datasampler
train_sampler = None
batch_size = self.hparams.batch_size
try:
if self.use_ddp and not self.force_remove_distributed_sampler:
train_sampler = DistributedSampler(dataset, rank=self.trainer.proc_rank)
batch_size = batch_size // self.trainer.world_size # scale batch size
except Exception:
pass
should_shuffle = train_sampler is None
loader = DataLoader(
dataset=dataset,
batch_size=batch_size,
shuffle=should_shuffle,
sampler=train_sampler
)
return loader
@data_loader
def tng_dataloader(self):
return self.__dataloader(train=True)
@data_loader
def val_dataloader(self):
return self.__dataloader(train=False)
@data_loader
def test_dataloader(self):
return self.__dataloader(train=False)
@staticmethod
def add_model_specific_args(parent_parser, root_dir): # pragma: no cover
"""
Parameters you define here will be available to your model through self.hparams
:param parent_parser:
:param root_dir:
:return:
"""
parser = HyperOptArgumentParser(strategy=parent_parser.strategy, parents=[parent_parser])
# param overwrites
# parser.set_defaults(gradient_clip=5.0)
# network params
parser.opt_list('--drop_prob', default=0.2, options=[0.2, 0.5], type=float, tunable=False)
parser.add_argument('--in_features', default=28 * 28, type=int)
parser.add_argument('--out_features', default=10, type=int)
# use 500 for CPU, 50000 for GPU to see speed difference
parser.add_argument('--hidden_dim', default=50000, type=int)
# data
parser.add_argument('--data_root', default=os.path.join(root_dir, 'mnist'), type=str)
# training params (opt)
parser.opt_list('--learning_rate', default=0.001 * 8, type=float,
options=[0.0001, 0.0005, 0.001, 0.005],
tunable=False)
parser.opt_list('--optimizer_name', default='adam', type=str,
options=['adam'], tunable=False)
# if using 2 nodes with 4 gpus each the batch size here
# (256) will be 256 / (2*8) = 16 per gpu
parser.opt_list('--batch_size', default=256 * 8, type=int,
options=[32, 64, 128, 256], tunable=False,
help='batch size will be divided over all gpus being used across all nodes')
return parser
-196
View File
@@ -1,196 +0,0 @@
import os
from collections import OrderedDict
import torch
import torch.nn as nn
import torch.nn.functional as F
from torch import optim
from torch.utils.data import DataLoader
from torch.utils.data.distributed import DistributedSampler
from torchvision.datasets import MNIST
from torchvision import transforms
from test_tube import HyperOptArgumentParser
from pytorch_lightning.root_module.root_module import LightningModule
from pytorch_lightning import data_loader
class NoValModel(LightningModule):
"""
Sample model to show how to define a template
"""
def __init__(self, hparams, force_remove_distributed_sampler=False):
"""
Pass in parsed HyperOptArgumentParser to the model
:param hparams:
"""
# init superclass
super(NoValModel, self).__init__()
self.hparams = hparams
self.batch_size = hparams.batch_size
# if you specify an example input, the summary will show input/output for each layer
self.example_input_array = torch.rand(5, 28 * 28)
# remove to test warning for dist sampler
self.force_remove_distributed_sampler = force_remove_distributed_sampler
# build model
self.__build_model()
# ---------------------
# MODEL SETUP
# ---------------------
def __build_model(self):
"""
Layout model
:return:
"""
self.c_d1 = nn.Linear(in_features=self.hparams.in_features,
out_features=self.hparams.hidden_dim)
self.c_d1_bn = nn.BatchNorm1d(self.hparams.hidden_dim)
self.c_d1_drop = nn.Dropout(self.hparams.drop_prob)
self.c_d2 = nn.Linear(in_features=self.hparams.hidden_dim,
out_features=self.hparams.out_features)
# ---------------------
# TRAINING
# ---------------------
def forward(self, x):
"""
No special modification required for lightning, define as you normally would
:param x:
:return:
"""
x = self.c_d1(x)
x = torch.tanh(x)
x = self.c_d1_bn(x)
x = self.c_d1_drop(x)
x = self.c_d2(x)
logits = F.log_softmax(x, dim=1)
return logits
def loss(self, labels, logits):
nll = F.nll_loss(logits, labels)
return nll
def training_step(self, data_batch, batch_i):
"""
Lightning calls this inside the training loop
:param data_batch:
:return:
"""
# forward pass
x, y = data_batch
x = x.view(x.size(0), -1)
y_hat = self.forward(x)
# calculate loss
loss_val = self.loss(y, y_hat)
# in DP mode (default) make sure if result is scalar, there's another dim in the beginning
if self.trainer.use_dp:
loss_val = loss_val.unsqueeze(0)
# alternate possible outputs to test
if self.trainer.batch_nb % 1 == 0:
output = OrderedDict({
'loss': loss_val,
'prog': {'some_val': loss_val * loss_val}
})
return output
if self.trainer.batch_nb % 2 == 0:
return loss_val
def on_tng_metrics(self, logs):
logs['some_tensor_to_test'] = torch.rand(1)
# ---------------------
# TRAINING SETUP
# ---------------------
def configure_optimizers(self):
"""
return whatever optimizers we want here
:return: list of optimizers
"""
# try no scheduler for this model (testing purposes)
optimizer = optim.Adam(self.parameters(), lr=self.hparams.learning_rate)
# test returning only 1 list instead of 2
return [optimizer]
def __dataloader(self, train):
# init data generators
transform = transforms.Compose([transforms.ToTensor(),
transforms.Normalize((0.5,), (1.0,))])
dataset = MNIST(root=self.hparams.data_root, train=train,
transform=transform, download=True)
# when using multi-node we need to add the datasampler
train_sampler = None
batch_size = self.hparams.batch_size
try:
if self.use_ddp and not self.force_remove_distributed_sampler:
train_sampler = DistributedSampler(dataset, rank=self.trainer.proc_rank)
batch_size = batch_size // self.trainer.world_size # scale batch size
except Exception:
pass
should_shuffle = train_sampler is None
loader = DataLoader(
dataset=dataset,
batch_size=batch_size,
shuffle=should_shuffle,
sampler=train_sampler
)
return loader
@data_loader
def tng_dataloader(self):
return self.__dataloader(train=True)
@staticmethod
def add_model_specific_args(parent_parser, root_dir): # pragma: no cover
"""
Parameters you define here will be available to your model through self.hparams
:param parent_parser:
:param root_dir:
:return:
"""
parser = HyperOptArgumentParser(strategy=parent_parser.strategy, parents=[parent_parser])
# param overwrites
# parser.set_defaults(gradient_clip=5.0)
# network params
parser.opt_list('--drop_prob', default=0.2, options=[0.2, 0.5], type=float, tunable=False)
parser.add_argument('--in_features', default=28 * 28, type=int)
parser.add_argument('--out_features', default=10, type=int)
# use 500 for CPU, 50000 for GPU to see speed difference
parser.add_argument('--hidden_dim', default=50000, type=int)
# data
parser.add_argument('--data_root', default=os.path.join(root_dir, 'mnist'), type=str)
# training params (opt)
parser.opt_list('--learning_rate', default=0.001 * 8, type=float,
options=[0.0001, 0.0005, 0.001, 0.005],
tunable=False)
parser.opt_list('--optimizer_name', default='adam', type=str,
options=['adam'], tunable=False)
# if using 2 nodes with 4 gpus each the batch size here
# (256) will be 256 / (2*8) = 16 per gpu
parser.opt_list('--batch_size', default=256 * 8, type=int,
options=[32, 64, 128, 256], tunable=False,
help='batch size will be divided over all gpus being used across all nodes')
return parser
@@ -1,18 +1,17 @@
import os
from collections import OrderedDict
import torch
import torch.nn as nn
from torchvision.datasets import MNIST
import torchvision.transforms as transforms
import torch
import torch.nn.functional as F
from test_tube import HyperOptArgumentParser
from torch import optim
from torch.utils.data import DataLoader
from torch.utils.data.distributed import DistributedSampler
from torchvision.datasets import MNIST
from torchvision import transforms
from test_tube import HyperOptArgumentParser
from pytorch_lightning.root_module.root_module import LightningModule
from pytorch_lightning import data_loader
import pytorch_lightning as ptl
class LightningTestModel(LightningModule):
@@ -48,13 +47,11 @@ class LightningTestModel(LightningModule):
Layout model
:return:
"""
self.c_d1 = nn.Linear(in_features=self.hparams.in_features,
out_features=self.hparams.hidden_dim)
self.c_d1 = nn.Linear(in_features=self.hparams.in_features, out_features=self.hparams.hidden_dim)
self.c_d1_bn = nn.BatchNorm1d(self.hparams.hidden_dim)
self.c_d1_drop = nn.Dropout(self.hparams.drop_prob)
self.c_d2 = nn.Linear(in_features=self.hparams.hidden_dim,
out_features=self.hparams.out_features)
self.c_d2 = nn.Linear(in_features=self.hparams.hidden_dim, out_features=self.hparams.out_features)
# ---------------------
# TRAINING
@@ -99,17 +96,14 @@ class LightningTestModel(LightningModule):
if self.trainer.use_dp:
loss_val = loss_val.unsqueeze(0)
# alternate possible outputs to test
if self.trainer.batch_nb % 1 == 0:
output = OrderedDict({
'loss': loss_val,
'prog': {'some_val': loss_val * loss_val}
})
return output
if self.trainer.batch_nb % 2 == 0:
return loss_val
output = OrderedDict({
'loss': loss_val
})
def validation_step(self, data_batch, batch_i, dataloader_i):
# can also return just a scalar instead of a dict (return loss_val)
return output
def validation_step(self, data_batch, batch_i):
"""
Lightning calls this inside the validation loop
:param data_batch:
@@ -135,28 +129,22 @@ class LightningTestModel(LightningModule):
val_acc = val_acc.unsqueeze(0)
# alternate possible outputs to test
if batch_i % 1 == 0:
if self.trainer.batch_nb % 1 == 0:
output = OrderedDict({
'val_loss': loss_val,
'val_acc': val_acc,
})
return output
if batch_i % 2 == 0:
if self.trainer.batch_nb % 2 == 0:
return val_acc
if batch_i % 3 == 0:
if self.trainer.batch_nb % 3 == 0:
output = OrderedDict({
'val_loss': loss_val,
'val_acc': val_acc,
'test_dic': {'val_loss_a': loss_val}
})
return output
if batch_i % 5 == 0:
output = OrderedDict({
f'val_loss_{dataloader_i}': loss_val,
f'val_acc_{dataloader_i}': val_acc,
})
return output
def validation_end(self, outputs):
"""
@@ -191,28 +179,23 @@ class LightningTestModel(LightningModule):
return whatever optimizers we want here
:return: list of optimizers
"""
# try no scheduler for this model (testing purposes)
optimizer = optim.Adam(self.parameters(), lr=self.hparams.learning_rate)
# test returning only 1 list instead of 2
return optimizer
return [optimizer]
def __dataloader(self, train):
# init data generators
transform = transforms.Compose([transforms.ToTensor(),
transforms.Normalize((0.5,), (1.0,))])
dataset = MNIST(root=self.hparams.data_root, train=train,
transform=transform, download=True)
transform = transforms.Compose([transforms.ToTensor(), transforms.Normalize((0.5,), (1.0,))])
dataset = MNIST(root=self.hparams.data_root, train=train, transform=transform, download=True)
# when using multi-node we need to add the datasampler
train_sampler = None
batch_size = self.hparams.batch_size
try:
if self.use_ddp and not self.force_remove_distributed_sampler:
if self.on_gpu and not self.force_remove_distributed_sampler:
train_sampler = DistributedSampler(dataset, rank=self.trainer.proc_rank)
batch_size = batch_size // self.trainer.world_size # scale batch size
except Exception:
except Exception as e:
pass
should_shuffle = train_sampler is None
@@ -225,20 +208,20 @@ class LightningTestModel(LightningModule):
return loader
@data_loader
@ptl.data_loader
def tng_dataloader(self):
return self.__dataloader(train=True)
@data_loader
@ptl.data_loader
def val_dataloader(self):
return [self.__dataloader(train=False), self.__dataloader(train=False)]
return self.__dataloader(train=False)
@data_loader
@ptl.data_loader
def test_dataloader(self):
return self.__dataloader(train=False)
@staticmethod
def add_model_specific_args(parent_parser, root_dir): # pragma: no cover
def add_model_specific_args(parent_parser, root_dir):
"""
Parameters you define here will be available to your model through self.hparams
:param parent_parser:
@@ -252,24 +235,19 @@ class LightningTestModel(LightningModule):
# network params
parser.opt_list('--drop_prob', default=0.2, options=[0.2, 0.5], type=float, tunable=False)
parser.add_argument('--in_features', default=28 * 28, type=int)
parser.add_argument('--in_features', default=28*28, type=int)
parser.add_argument('--out_features', default=10, type=int)
# use 500 for CPU, 50000 for GPU to see speed difference
parser.add_argument('--hidden_dim', default=50000, type=int)
parser.add_argument('--hidden_dim', default=50000, type=int) # use 500 for CPU, 50000 for GPU to see speed difference
# data
parser.add_argument('--data_root', default=os.path.join(root_dir, 'mnist'), type=str)
# training params (opt)
parser.opt_list('--learning_rate', default=0.001 * 8, type=float,
options=[0.0001, 0.0005, 0.001, 0.005],
parser.opt_list('--learning_rate', default=0.001*8, type=float, options=[0.0001, 0.0005, 0.001, 0.005],
tunable=False)
parser.opt_list('--optimizer_name', default='adam', type=str,
options=['adam'], tunable=False)
parser.opt_list('--optimizer_name', default='adam', type=str, options=['adam'], tunable=False)
# if using 2 nodes with 4 gpus each the batch size here
# (256) will be 256 / (2*8) = 16 per gpu
parser.opt_list('--batch_size', default=256 * 8, type=int,
options=[32, 64, 128, 256], tunable=False,
help='batch size will be divided over all gpus being used across all nodes')
# if using 2 nodes with 4 gpus each the batch size here (256) will be 256 / (2*8) = 16 per gpu
parser.opt_list('--batch_size', default=256*8, type=int, options=[32, 64, 128, 256], tunable=False,
help='batch size will be divided over all the gpus being used across all nodes')
return parser
+210
View File
@@ -0,0 +1,210 @@
import os
import sys
import torch
import numpy as np
from test_tube import HyperOptArgumentParser, Experiment, SlurmCluster
from pytorch_lightning.models.trainer import Trainer
from pytorch_lightning.utils.arg_parse import add_default_args
from time import sleep
from pytorch_lightning.callbacks.pt_callbacks import EarlyStopping, ModelCheckpoint
SEED = 2334
torch.manual_seed(SEED)
np.random.seed(SEED)
# ---------------------
# DEFINE MODEL HERE
# ---------------------
from pytorch_lightning.models.sample_model_template.model_template import ExampleModel1
# ---------------------
AVAILABLE_MODELS = {
'model_1': ExampleModel1
}
"""
Allows training by using command line arguments
Run by:
# TYPE YOUR RUN COMMAND HERE
"""
def main_local(hparams):
main(hparams, None, None)
def main(hparams, cluster, results_dict):
"""
Main training routine specific for this project
:param hparams:
:return:
"""
on_gpu = torch.cuda.is_available()
if hparams.disable_cuda:
on_gpu = False
device = 'cuda' if on_gpu else 'cpu'
hparams.__setattr__('device', device)
hparams.__setattr__('on_gpu', on_gpu)
hparams.__setattr__('nb_gpus', torch.cuda.device_count())
hparams.__setattr__('inference_mode', hparams.model_load_weights_path is not None)
# init experiment
exp = Experiment(
name=hparams.tt_name,
debug=hparams.debug,
save_dir=hparams.tt_save_path,
version=hparams.hpc_exp_number,
autosave=False,
description=hparams.tt_description
)
exp.argparse(hparams)
exp.save()
# build model
print('loading model...')
model = TRAINING_MODEL(hparams)
print('model built')
# callbacks
early_stop = EarlyStopping(
monitor=hparams.early_stop_metric,
patience=hparams.early_stop_patience,
verbose=True,
mode=hparams.early_stop_mode
)
model_save_path = '{}/{}/{}'.format(hparams.model_save_path, exp.name, exp.version)
checkpoint = ModelCheckpoint(
filepath=model_save_path,
save_function=None,
save_best_only=True,
verbose=True,
monitor=hparams.model_save_monitor_value,
mode=hparams.model_save_monitor_mode
)
# configure trainer
trainer = Trainer(
experiment=exp,
on_gpu=on_gpu,
cluster=cluster,
progress_bar=hparams.enable_tqdm,
overfit_pct=hparams.overfit,
track_grad_norm=hparams.track_grad_norm,
fast_dev_run=hparams.fast_dev_run,
check_val_every_n_epoch=hparams.check_val_every_n_epoch,
accumulate_grad_batches=hparams.accumulate_grad_batches,
process_position=process_position,
current_gpu_name=current_gpu,
checkpoint_callback=checkpoint,
early_stop_callback=early_stop,
enable_early_stop=hparams.enable_early_stop,
max_nb_epochs=hparams.max_nb_epochs,
min_nb_epochs=hparams.min_nb_epochs,
train_percent_check=hparams.train_percent_check,
val_percent_check=hparams.val_percent_check,
test_percent_check=hparams.test_percent_check,
val_check_interval=hparams.val_check_interval,
log_save_interval=hparams.log_save_interval,
add_log_row_interval=hparams.add_log_row_interval,
lr_scheduler_milestones=hparams.lr_scheduler_milestones
)
# train model
trainer.fit(model)
def get_default_parser(strategy, root_dir):
possible_model_names = list(AVAILABLE_MODELS.keys())
parser = HyperOptArgumentParser(strategy=strategy, add_help=False)
add_default_args(parser, root_dir, possible_model_names, SEED)
return parser
def get_model_name(args):
for i, arg in enumerate(args):
if 'model_name' in arg:
return args[i+1]
def optimize_on_cluster(hyperparams):
# enable cluster training
cluster = SlurmCluster(
hyperparam_optimizer=hyperparams,
log_path=hyperparams.tt_save_path,
test_tube_exp_name=hyperparams.tt_name
)
# email for cluster coms
cluster.notify_job_status(email='add_email_here', on_done=True, on_fail=True)
# configure cluster
cluster.per_experiment_nb_gpus = hyperparams.per_experiment_nb_gpus
cluster.job_time = '48:00:00'
cluster.gpu_type = '1080ti'
cluster.memory_mb_per_node = 48000
# any modules for code to run in env
cluster.add_command('source activate pytorch_lightning')
# name of exp
job_display_name = hyperparams.tt_name.split('_')[0]
job_display_name = job_display_name[0:3]
# run hopt
print('submitting jobs...')
cluster.optimize_parallel_cluster_gpu(
main,
nb_trials=hyperparams.nb_hopt_trials,
job_name=job_display_name
)
if __name__ == '__main__':
model_name = get_model_name(sys.argv)
# use default args
root_dir = os.path.split(os.path.dirname(sys.modules['__main__'].__file__))[0]
parent_parser = get_default_parser(strategy='random_search', root_dir=root_dir)
# allow model to overwrite or extend args
TRAINING_MODEL = AVAILABLE_MODELS[model_name]
parser = TRAINING_MODEL.add_model_specific_args(parent_parser)
parser.json_config('-c', '--config', default=root_dir + '/run_configs/local.json')
hyperparams = parser.parse_args()
# format GPU layout
os.environ["CUDA_DEVICE_ORDER"] = "PCI_BUS_ID"
gpu_ids = hyperparams.gpus.split(';')
# RUN TRAINING
if hyperparams.on_cluster:
print('RUNNING ON SLURM CLUSTER')
os.environ["CUDA_VISIBLE_DEVICES"] = ','.join(gpu_ids)
optimize_on_cluster(hyperparams)
elif hyperparams.single_run_gpu:
print(f'RUNNING 1 TRIAL ON GPU. gpu: {gpu_ids[0]}')
os.environ["CUDA_VISIBLE_DEVICES"] = gpu_ids[0]
main(hyperparams, None, None)
elif hyperparams.local or hyperparams.single_run:
os.environ["CUDA_VISIBLE_DEVICES"] = '0'
print('RUNNING LOCALLY')
main(hyperparams, None, None)
else:
print(f'RUNNING MULTI GPU. GPU ids: {gpu_ids}')
hyperparams.optimize_parallel_gpu(
main_local,
gpu_ids=gpu_ids,
nb_trials=hyperparams.nb_hopt_trials,
nb_workers=len(gpu_ids)
)
@@ -1,48 +1,31 @@
"""
List of default args which mught be useful for all the available flags
Might need to update with the new flags
"""
import os
import pdb
def add_default_args(parser, root_dir, rand_seed=None, possible_model_names=None):
# tng, test, val check intervals
parser.add_argument('--eval_test_set', dest='eval_test_set', action='store_true',
help='true = run test set also')
parser.add_argument('--check_val_every_n_epoch', default=1, type=int,
help='check val every n epochs')
parser.add_argument('--eval_test_set', dest='eval_test_set', action='store_true', help='true = run test set also')
parser.add_argument('--check_val_every_n_epoch', default=1, type=int, help='check val every n epochs')
parser.opt_list('--accumulate_grad_batches', default=1, type=int, tunable=False,
help='accumulates gradients k times before applying update.'
' Simulates huge batch size')
help='accumulates gradients k times before applying update. Simulates huge batch size')
parser.add_argument('--max_nb_epochs', default=200, type=int, help='cap epochs')
parser.add_argument('--min_nb_epochs', default=2, type=int, help='min epochs')
parser.add_argument('--train_percent_check', default=1.0, type=float,
help='how much of tng set to check')
parser.add_argument('--val_percent_check', default=1.0, type=float,
help='how much of val set to check')
parser.add_argument('--test_percent_check', default=1.0, type=float,
help='how much of test set to check')
parser.add_argument('--train_percent_check', default=1.0, type=float, help='how much of tng set to check')
parser.add_argument('--val_percent_check', default=1.0, type=float, help='how much of val set to check')
parser.add_argument('--test_percent_check', default=1.0, type=float, help='how much of test set to check')
parser.add_argument('--val_check_interval', default=0.95, type=float,
help='how much within 1 epoch to check val')
parser.add_argument('--log_save_interval', default=100, type=int,
help='how many batches between log saves')
parser.add_argument('--add_log_row_interval', default=100, type=int,
help='add log every k batches')
parser.add_argument('--val_check_interval', default=0.95, type=float, help='how much within 1 epoch to check val')
parser.add_argument('--log_save_interval', default=100, type=int, help='how many batches between log saves')
parser.add_argument('--add_log_row_interval', default=100, type=int, help='add log every k batches')
# early stopping
parser.add_argument('--disable_early_stop', dest='enable_early_stop', action='store_false')
parser.add_argument('--early_stop_metric', default='val_acc', type=str)
parser.add_argument('--early_stop_mode', default='min', type=str)
parser.add_argument('--early_stop_patience', default=3, type=int,
help='number of epochs until stop')
parser.add_argument('--early_stop_patience', default=3, type=int, help='number of epochs until stop')
# gradient handling
parser.add_argument('--gradient_clip', default=-1, type=int)
parser.add_argument('--track_grad_norm', default=-1, type=int,
help='if > 0, will track this grad norm')
parser.add_argument('--track_grad_norm', default=-1, type=int, help='if > 0, will track this grad norm')
# model saving
parser.add_argument('--model_save_path', default=root_dir + '/model_weights')
@@ -58,8 +41,7 @@ def add_default_args(parser, root_dir, rand_seed=None, possible_model_names=None
# test_tube settings
parser.add_argument('-en', '--tt_name', default='pt_test')
parser.add_argument('-td', '--tt_description', default='pytorch lightning test')
parser.add_argument('--tt_save_path', default=os.path.join(root_dir, 'test_tube_logs'),
help='logging dir')
parser.add_argument('--tt_save_path', default=root_dir + '/test_tube_logs', help='logging dir')
parser.add_argument('--enable_single_run', dest='single_run', action='store_true')
parser.add_argument('--nb_hopt_trials', default=1, type=int)
parser.add_argument('--log_stdout', dest='log_stdout', action='store_true')
@@ -70,30 +52,25 @@ def add_default_args(parser, root_dir, rand_seed=None, possible_model_names=None
parser.add_argument('--default_tensor_type', default='torch.cuda.FloatTensor', type=str)
parser.add_argument('--use_amp', dest='use_amp', action='store_true')
parser.add_argument('--check_grad_nans', dest='check_grad_nans', action='store_true')
parser.add_argument('--amp_level', default='O2', type=str)
parser.add_argument('--amp_level', default='O2',type=str)
# run on hpc
parser.add_argument('--on_cluster', dest='on_cluster', action='store_true')
# FAST training
# use these settings to make sure network has no bugs without running a full dataset
parser.add_argument('--fast_dev_run', dest='fast_dev_run', default=False, action='store_true',
help='runs validation after 1 tng step')
parser.add_argument('--enable_tqdm', dest='enable_tqdm', default=False, action='store_true',
help='false removes the prog bar')
parser.add_argument('--overfit', default=-1, type=float,
help='% of dataset to use with this option. float, or -1 for none')
parser.add_argument('--fast_dev_run', dest='fast_dev_run', default=False, action='store_true', help='runs validation after 1 tng step')
parser.add_argument('--enable_tqdm', dest='enable_tqdm', default=False, action='store_true', help='false removes the prog bar')
parser.add_argument('--overfit', default=-1, type=float, help='% of dataset to use with this option. float, or -1 for none')
# debug args
if rand_seed is not None:
parser.add_argument('--random_seed', default=rand_seed, type=int)
parser.add_argument('--interactive', dest='interactive', action='store_true',
help='runs on gpu without cluster')
parser.add_argument('--debug', dest='debug', action='store_true',
help='enables/disables test tube')
parser.add_argument('--local', dest='local', action='store_true',
help='enables local tng')
parser.add_argument('--interactive', dest='interactive', action='store_true', help='runs on gpu without cluster')
parser.add_argument('--debug', dest='debug', action='store_true', help='enables/disables test tube')
parser.add_argument('--local', dest='local', action='store_true', help='enables local tng')
# optimizer
parser.add_argument('--lr_scheduler_milestones', default=None, type=str)
parser.add_argument('--lr_scheduler_milestones', default=None, type=str)
@@ -1,2 +1,5 @@
import pdb
import sys
class MisconfigurationException(Exception):
pass
pass
+4 -2
View File
@@ -1,7 +1,9 @@
coverage==4.5.3
mkdocs==1.0.4
pytest==5.0.1
scikit-learn==0.20.2
tqdm==4.32.1
twine==1.13.0
numpy==1.16.4
torch>=1.1.0
torchvision>=0.3.0
pandas
torchvision==0.3.0
-4
View File
@@ -31,8 +31,6 @@ exclude_lines =
print(traceback.print_exc())
return *
raise Exception
raise *
except *
warnings
print
raise RuntimeError
@@ -44,8 +42,6 @@ omit =
pytorch_lightning/callbacks/pt_callbacks.py
tests/test_models.py
pytorch_lightning/testing_models/lm_test_module.py
pytorch_lightning/utilities/arg_parse.py
examples/templates
[flake8]
ignore = E731,W504,F401,F841
+16 -45
View File
@@ -1,58 +1,29 @@
#!/usr/bin/env python
# Always prefer setuptools over distutils
from setuptools import setup, find_packages
# https://packaging.python.org/guides/single-sourcing-package-version/
# http://blog.ionelmc.ro/2014/05/25/python-packaging/
# https://packaging.python.org/discussions/install-requires-vs-requirements /
# keep the meta-data here for simplicity in reading this file... it's not obvious
# what happens and to non-engineers they won't know to look in init ...
# the goal of the project is simplicity for researchers, don't want to add too much
# engineer specific practices
setup(
name='pytorch-lightning',
version='0.4.7',
description='The Keras for ML researchers using PyTorch',
author='William Falcon',
author_email='waf2107@columbia.edu',
url='https://github.com/williamFalcon/pytorch-lightning',
download_url='https://github.com/williamFalcon/pytorch-lightning',
license='Apache-2',
name="pytorch-lightning",
version='0.3.6.2',
description="The Keras for ML researchers using PyTorch",
author="William Falcon",
author_email="waf2107@columbia.edu",
url="https://github.com/williamFalcon/pytorch-lightning",
download_url="https://github.com/williamFalcon/pytorch-lightning",
license="MIT",
keywords=["deep learning", "pytorch", "AI"],
python_requires=">=3.5",
install_requires=[
"torch>=1.1.0",
"tqdm",
"test-tube>=0.6.7.4",
],
packages=find_packages(),
long_description=open('README.md', encoding='utf-8').read(),
long_description=open("README.md", encoding="utf-8").read(),
long_description_content_type='text/markdown',
include_package_data=True,
zip_safe=False,
keywords=['deep learning', 'pytorch', 'AI'],
python_requires='>=3.6',
install_requires=[
'torch==1.2.0',
'tqdm',
'test-tube>=0.6.9',
'pandas>=0.20.3',
],
classifiers=[
'Environment :: Console',
'Natural Language :: English',
# How mature is this project? Common values are
# 3 - Alpha, 4 - Beta, 5 - Production/Stable
'Development Status :: 4 - Beta',
# Indicate who your project is intended for
'Intended Audience :: Developers',
'Topic :: Scientific/Engineering :: Artificial Intelligence',
'Topic :: Scientific/Engineering :: Image Recognition',
'Topic :: Scientific/Engineering :: Information Analysis',
# Pick your license as you wish
'License :: OSI Approved :: BSD License',
'Operating System :: OS Independent',
# Specify the Python versions you support here. In particular, ensure
# that you indicate whether you support Python 2, Python 3 or both.
'Programming Language :: Python :: 3',
'Programming Language :: Python :: 3.5',
'Programming Language :: Python :: 3.6',
'Programming Language :: Python :: 3.7',
],
)
+4 -9
View File
@@ -1,4 +1,4 @@
# PyTorch-Lightning Tests
# Pytorch-Lightning Tests
## Running tests
The automatic travis tests ONLY run CPU-based tests. Although these cover most of the use cases,
@@ -17,7 +17,7 @@ pip install -e .
pip install -r requirements.txt
# run tests
py.test -v
py.test
```
To test models that require GPU make sure to run the above command on a GPU machine.
@@ -43,21 +43,16 @@ For each set up it also tests:
5. simulated load from HPC signal.
## Running Coverage
Make sure to run coverage on a GPU machine with at least 2 GPUs and NVIDIA apex installed.
```bash
cd pytorch-lightning
# generate coverage
pip install coverage
coverage run --source pytorch_lightning -m py.test pytorch_lightning tests examples -v --doctest-modules
coverage run tests/test_models.py
# print coverage stats
coverage report -m
# exporting resulys
coverage xml
codecov -t 17327163-8cca-4a5d-86c8-ca5f2ef700bc -v
coverage report -m
```
+28 -44
View File
@@ -1,20 +1,24 @@
import pytest
from pytorch_lightning import Trainer
from examples import LightningTemplateModel
from pytorch_lightning.examples.new_project_templates.lightning_module_template import LightningTemplateModel
from argparse import Namespace
from test_tube import Experiment
from pytorch_lightning.callbacks import ModelCheckpoint
import numpy as np
import warnings
import torch
import os
import shutil
import pdb
import pytorch_lightning as pl
import pytorch_lightning as ptl
import torch
from torch.nn import functional as F
from torch.utils.data import DataLoader
from torchvision.datasets import MNIST
import numpy as np
class CoolModel(pl.LightningModule):
class CoolModel(ptl.LightningModule):
def __init(self):
super(CoolModel, self).__init__()
@@ -44,15 +48,15 @@ class CoolModel(pl.LightningModule):
def configure_optimizers(self):
return [torch.optim.Adam(self.parameters(), lr=0.02)]
@pl.data_loader
@ptl.data_loader
def tng_dataloader(self):
return DataLoader(MNIST('path/to/save', train=True), batch_size=32)
@pl.data_loader
@ptl.data_loader
def val_dataloader(self):
return DataLoader(MNIST('path/to/save', train=False), batch_size=32)
@pl.data_loader
@ptl.data_loader
def test_dataloader(self):
return DataLoader(MNIST('path/to/save', train=False), batch_size=32)
@@ -62,8 +66,8 @@ def get_model():
root_dir = os.path.dirname(os.path.realpath(__file__))
hparams = Namespace(**{'drop_prob': 0.2,
'batch_size': 32,
'in_features': 28 * 28,
'learning_rate': 0.001 * 8,
'in_features': 28*28,
'learning_rate': 0.001*8,
'optimizer_name': 'adam',
'data_root': os.path.join(root_dir, 'mnist'),
'out_features': 10,
@@ -108,8 +112,7 @@ def load_model(exp, save_dir):
checkpoints = [x for x in os.listdir(save_dir) if '.ckpt' in x]
weights_dir = os.path.join(save_dir, checkpoints[0])
trained_model = LightningTemplateModel.load_from_metrics(weights_path=weights_dir,
tags_csv=tags_path, on_gpu=True)
trained_model = LightningTemplateModel.load_from_metrics(weights_path=weights_dir, tags_csv=tags_path, on_gpu=True)
assert trained_model is not None, 'loading model failed'
@@ -134,63 +137,44 @@ def run_prediction(dataloader, trained_model):
print(val_acc)
assert val_acc > 0.70, 'this model is expected to get > 0.7 in test set (it got %f)' % val_acc
assert val_acc > 0.70, f'this model is expected to get > 0.7 in test set (it got {val_acc})'
def run_gpu_model_test(trainer_options, model, hparams, on_gpu=True):
def main():
save_dir = init_save_dir()
# exp file to get meta
exp = get_exp(False)
exp.argparse(hparams)
exp.save()
# exp file to get weights
checkpoint = ModelCheckpoint(save_dir)
# add these to the trainer options
trainer_options['checkpoint_callback'] = checkpoint
trainer_options['experiment'] = exp
trainer = Trainer(
experiment=exp,
checkpoint_callback=checkpoint,
progress_bar=True,
max_nb_epochs=1,
gpus=[0, 1],
distributed_backend='dp',
)
model = CoolModel()
# fit model
trainer = Trainer(**trainer_options)
result = trainer.fit(model)
# correct result and ok accuracy
assert result == 1, 'amp + ddp model failed to complete'
# test model loading
pretrained_model = load_model(exp, save_dir, on_gpu)
pretrained_model = load_model(exp, save_dir)
# test model preds
run_prediction(model.test_dataloader, pretrained_model)
if trainer.use_ddp:
# on hpc this would work fine... but need to hack it for the purpose of the test
trainer.model = pretrained_model
trainer.optimizers, trainer.lr_schedulers = pretrained_model.configure_optimizers()
# test HPC loading / saving
trainer.hpc_save(save_dir, exp)
trainer.hpc_load(save_dir, on_gpu=on_gpu)
clear_save_dir()
def main():
os.environ['MASTER_PORT'] = str(np.random.randint(12000, 19000, 1)[0])
model, hparams = get_model()
trainer_options = dict(
max_nb_epochs=1,
train_percent_check=0.4,
val_percent_check=0.2,
gpus=[0, 1],
distributed_backend='ddp'
)
run_gpu_model_test(trainer_options, model, hparams)
if __name__ == '__main__':
main()
-8
View File
@@ -1,8 +0,0 @@
tox
coverage
codecov
pytest>=3.0.5
pytest-cov
flake8
check-manifest
test_tube
+124 -457
View File
@@ -1,22 +1,20 @@
import os
import shutil
import warnings
from argparse import Namespace
import pytest
import numpy as np
import torch
from test_tube import Experiment, SlurmCluster
# sys.path += [os.path.abspath('..'), os.path.abspath('../..')]
from pytorch_lightning import Trainer
from pytorch_lightning.testing import LightningTestModel, NoValEndTestModel, NoValModel
from pytorch_lightning.examples.new_project_templates.lightning_module_template import LightningTemplateModel
from pytorch_lightning.testing_models.lm_test_module import LightningTestModel
from argparse import Namespace
from test_tube import Experiment, SlurmCluster
from pytorch_lightning.callbacks import ModelCheckpoint, EarlyStopping
from pytorch_lightning.utilities.debugging import MisconfigurationException
from pytorch_lightning.utils.debugging import MisconfigurationException
from pytorch_lightning.root_module import memory
from pytorch_lightning.models.trainer import reduce_distributed_output
from pytorch_lightning.root_module import model_saving
from examples import LightningTemplateModel
import numpy as np
import warnings
import torch
import os
import shutil
import pdb
SEED = 2334
torch.manual_seed(SEED)
@@ -26,377 +24,6 @@ np.random.seed(SEED)
# ------------------------------------------------------------------------
# TESTS
# ------------------------------------------------------------------------
def test_multi_gpu_model_ddp():
"""
Make sure DDP works
:return:
"""
if not torch.cuda.is_available():
warnings.warn('test_multi_gpu_model_ddp cannot run.'
' Rerun on a GPU node to run this test')
return
if not torch.cuda.device_count() > 1:
warnings.warn('test_multi_gpu_model_ddp cannot run.'
' Rerun on a node with 2+ GPUs to run this test')
return
os.environ['MASTER_PORT'] = str(np.random.randint(12000, 19000, 1)[0])
model, hparams = get_model()
trainer_options = dict(
show_progress_bar=False,
max_nb_epochs=1,
train_percent_check=0.4,
val_percent_check=0.2,
gpus=[0, 1],
distributed_backend='ddp'
)
run_gpu_model_test(trainer_options, model, hparams)
def test_optimizer_return_options():
trainer = Trainer()
model, hparams = get_model()
# single optimizer
opt_a = torch.optim.Adam(model.parameters(), lr=0.002)
opt_b = torch.optim.SGD(model.parameters(), lr=0.002)
optim, lr_sched = trainer.init_optimizers(opt_a)
assert len(optim) == 1 and len(lr_sched) == 0
# opt tuple
opts = (opt_a, opt_b)
optim, lr_sched = trainer.init_optimizers(opts)
assert len(optim) == 2 and optim[0] == opts[0] and optim[1] == opts[1]
assert len(lr_sched) == 0
# opt list
opts = [opt_a, opt_b]
optim, lr_sched = trainer.init_optimizers(opts)
assert len(optim) == 2 and optim[0] == opts[0] and optim[1] == opts[1]
assert len(lr_sched) == 0
# opt tuple of lists
opts = ([opt_a], ['lr_scheduler'])
optim, lr_sched = trainer.init_optimizers(opts)
assert len(optim) == 1 and len(lr_sched) == 1
assert optim[0] == opts[0][0] and lr_sched[0] == 'lr_scheduler'
def test_single_gpu_batch_parse():
if not torch.cuda.is_available():
warnings.warn('test_amp_gpu_ddp cannot run.'
'Rerun on a GPU node to run this test')
return
if not torch.cuda.device_count() > 1:
warnings.warn('test_amp_gpu_ddp cannot run.'
'Rerun on a node with 2+ GPUs to run this test')
return
trainer = Trainer()
# batch is just a tensor
batch = torch.rand(2, 3)
batch = trainer.transfer_batch_to_gpu(batch, 0)
assert batch.device.index == 0 and batch.type() == 'torch.cuda.FloatTensor'
# tensor list
batch = [torch.rand(2, 3), torch.rand(2, 3)]
batch = trainer.transfer_batch_to_gpu(batch, 0)
assert batch[0].device.index == 0 and batch[0].type() == 'torch.cuda.FloatTensor'
assert batch[1].device.index == 0 and batch[1].type() == 'torch.cuda.FloatTensor'
# tensor list of lists
batch = [[torch.rand(2, 3), torch.rand(2, 3)]]
batch = trainer.transfer_batch_to_gpu(batch, 0)
assert batch[0][0].device.index == 0 and batch[0][0].type() == 'torch.cuda.FloatTensor'
assert batch[0][1].device.index == 0 and batch[0][1].type() == 'torch.cuda.FloatTensor'
# tensor dict
batch = [{'a': torch.rand(2, 3), 'b': torch.rand(2, 3)}]
batch = trainer.transfer_batch_to_gpu(batch, 0)
assert batch[0]['a'].device.index == 0 and batch[0]['a'].type() == 'torch.cuda.FloatTensor'
assert batch[0]['b'].device.index == 0 and batch[0]['b'].type() == 'torch.cuda.FloatTensor'
# tuple of tensor list and list of tensor dict
batch = ([torch.rand(2, 3) for _ in range(2)],
[{'a': torch.rand(2, 3), 'b': torch.rand(2, 3)} for _ in range(2)])
batch = trainer.transfer_batch_to_gpu(batch, 0)
assert batch[0][0].device.index == 0 and batch[0][0].type() == 'torch.cuda.FloatTensor'
assert batch[1][0]['a'].device.index == 0
assert batch[1][0]['a'].type() == 'torch.cuda.FloatTensor'
assert batch[1][0]['b'].device.index == 0
assert batch[1][0]['b'].type() == 'torch.cuda.FloatTensor'
def test_early_stopping_cpu_model():
"""
Test each of the trainer options
:return:
"""
stopping = EarlyStopping(monitor='val_loss')
trainer_options = dict(
early_stop_callback=stopping,
gradient_clip=1.0,
overfit_pct=0.20,
track_grad_norm=2,
print_nan_grads=True,
show_progress_bar=False,
experiment=get_exp(),
train_percent_check=0.1,
val_percent_check=0.1
)
model, hparams = get_model()
run_gpu_model_test(trainer_options, model, hparams, on_gpu=False)
# test freeze on cpu
model.freeze()
model.unfreeze()
def test_no_val_module():
"""
Tests use case where trainer saves the model, and user loads it from tags independently
:return:
"""
hparams = get_hparams()
model = NoValModel(hparams)
save_dir = init_save_dir()
# exp file to get meta
exp = get_exp(False)
exp.argparse(hparams)
exp.save()
trainer_options = dict(
max_nb_epochs=1,
cluster=SlurmCluster(),
experiment=exp,
checkpoint_callback=ModelCheckpoint(save_dir)
)
# fit model
trainer = Trainer(**trainer_options)
result = trainer.fit(model)
# traning complete
assert result == 1, 'amp + ddp model failed to complete'
# save model
new_weights_path = os.path.join(save_dir, 'save_test.ckpt')
trainer.save_checkpoint(new_weights_path)
# load new model
tags_path = exp.get_data_path(exp.name, exp.version)
tags_path = os.path.join(tags_path, 'meta_tags.csv')
model_2 = LightningTestModel.load_from_metrics(weights_path=new_weights_path,
tags_csv=tags_path, on_gpu=False)
model_2.eval()
# make prediction
clear_save_dir()
def test_no_val_end_module():
"""
Tests use case where trainer saves the model, and user loads it from tags independently
:return:
"""
hparams = get_hparams()
model = NoValEndTestModel(hparams)
save_dir = init_save_dir()
# exp file to get meta
exp = get_exp(False)
exp.argparse(hparams)
exp.save()
trainer_options = dict(
max_nb_epochs=1,
cluster=SlurmCluster(),
experiment=exp,
checkpoint_callback=ModelCheckpoint(save_dir)
)
# fit model
trainer = Trainer(**trainer_options)
result = trainer.fit(model)
# traning complete
assert result == 1, 'amp + ddp model failed to complete'
# save model
new_weights_path = os.path.join(save_dir, 'save_test.ckpt')
trainer.save_checkpoint(new_weights_path)
# load new model
tags_path = exp.get_data_path(exp.name, exp.version)
tags_path = os.path.join(tags_path, 'meta_tags.csv')
model_2 = LightningTestModel.load_from_metrics(weights_path=new_weights_path,
tags_csv=tags_path, on_gpu=False)
model_2.eval()
# make prediction
clear_save_dir()
def test_simple_cpu():
"""
Verify continue training session on CPU
:return:
"""
hparams = get_hparams()
model = LightningTestModel(hparams)
save_dir = init_save_dir()
# exp file to get meta
trainer_options = dict(
max_nb_epochs=1,
val_percent_check=0.1,
train_percent_check=0.1,
)
# fit model
trainer = Trainer(**trainer_options)
result = trainer.fit(model)
# traning complete
assert result == 1, 'amp + ddp model failed to complete'
clear_save_dir()
def test_amp_single_gpu():
"""
Make sure DDP + AMP work
:return:
"""
if not torch.cuda.is_available():
warnings.warn('test_amp_gpu_ddp cannot run.'
'Rerun on a GPU node to run this test')
return
if not torch.cuda.device_count() > 1:
warnings.warn('test_amp_gpu_ddp cannot run.'
'Rerun on a node with 2+ GPUs to run this test')
return
hparams = get_hparams()
model = LightningTestModel(hparams)
trainer_options = dict(
show_progress_bar=True,
max_nb_epochs=1,
gpus=[0],
distributed_backend='dp',
use_amp=True
)
run_gpu_model_test(trainer_options, model, hparams)
def test_cpu_restore_training():
"""
Verify continue training session on CPU
:return:
"""
hparams = get_hparams()
model = LightningTestModel(hparams)
save_dir = init_save_dir()
# exp file to get meta
test_exp_version = 10
exp = get_exp(False, version=test_exp_version)
exp.argparse(hparams)
exp.save()
trainer_options = dict(
max_nb_epochs=2,
val_check_interval=0.50,
val_percent_check=0.2,
train_percent_check=0.2,
experiment=exp,
checkpoint_callback=ModelCheckpoint(save_dir)
)
# fit model
trainer = Trainer(**trainer_options)
result = trainer.fit(model)
real_global_epoch = trainer.current_epoch
# traning complete
assert result == 1, 'amp + ddp model failed to complete'
# wipe-out trainer and model
# retrain with not much data... this simulates picking training back up after slurm
# we want to see if the weights come back correctly
new_exp = get_exp(False, version=test_exp_version)
trainer_options = dict(
max_nb_epochs=2,
val_check_interval=0.50,
val_percent_check=0.2,
train_percent_check=0.2,
experiment=new_exp,
checkpoint_callback=ModelCheckpoint(save_dir),
)
trainer = Trainer(**trainer_options)
model = LightningTestModel(hparams)
# set the epoch start hook so we can predict before the model does the full training
def assert_good_acc():
assert trainer.current_epoch == real_global_epoch and trainer.current_epoch > 0
# if model and state loaded correctly, predictions will be good even though we
# haven't trained with the new loaded model
trainer.model.eval()
_ = [run_prediction(dataloader, trainer.model) for dataloader in trainer.val_dataloader]
model.on_sanity_check_start = assert_good_acc
# by calling fit again, we trigger training, loading weights from the cluster
# and our hook to predict using current model before any more weight updates
trainer.fit(model)
clear_save_dir()
def test_amp_gpu_ddp():
"""
Make sure DDP + AMP work
:return:
"""
if not torch.cuda.is_available():
warnings.warn('test_amp_gpu_ddp cannot run.'
'Rerun on a GPU node to run this test')
return
if not torch.cuda.device_count() > 1:
warnings.warn('test_amp_gpu_ddp cannot run.'
'Rerun on a node with 2+ GPUs to run this test')
return
os.environ['MASTER_PORT'] = str(np.random.randint(12000, 19000, 1)[0])
hparams = get_hparams()
model = LightningTestModel(hparams)
trainer_options = dict(
show_progress_bar=True,
max_nb_epochs=1,
gpus=[0, 1],
distributed_backend='ddp',
use_amp=True
)
run_gpu_model_test(trainer_options, model, hparams)
def test_cpu_slurm_save_load():
"""
@@ -451,8 +78,7 @@ def test_cpu_slurm_save_load():
# wipe-out trainer and model
# retrain with not much data... this simulates picking training back up after slurm
# we want to see if the weights come back correctly
continue_tng_hparams = get_hparams(continue_training=True,
hpc_exp_number=cluster_a.hpc_exp_number)
continue_tng_hparams = get_hparams(continue_training=True, hpc_exp_number=cluster_a.hpc_exp_number)
trainer_options = dict(
max_nb_epochs=1,
cluster=SlurmCluster(continue_tng_hparams),
@@ -483,9 +109,11 @@ def test_cpu_slurm_save_load():
def test_loading_meta_tags():
hparams = get_hparams()
save_dir = init_save_dir()
# save tags
exp = get_exp(False)
exp.tag({'some_str': 'a_str', 'an_int': 1, 'a_float': 2.0})
exp.tag({'some_str':'a_str', 'an_int': 1, 'a_float': 2.0})
exp.argparse(hparams)
exp.save()
@@ -566,8 +194,7 @@ def test_model_saving_loading():
# load new model
tags_path = exp.get_data_path(exp.name, exp.version)
tags_path = os.path.join(tags_path, 'meta_tags.csv')
model_2 = LightningTestModel.load_from_metrics(weights_path=new_weights_path,
tags_csv=tags_path, on_gpu=False)
model_2 = LightningTestModel.load_from_metrics(weights_path=new_weights_path, tags_csv=tags_path, on_gpu=False)
model_2.eval()
# make prediction
@@ -578,6 +205,8 @@ def test_model_saving_loading():
clear_save_dir()
def test_model_freeze_unfreeze():
hparams = get_hparams()
model = LightningTestModel(hparams)
@@ -592,12 +221,10 @@ def test_amp_gpu_ddp_slurm_managed():
:return:
"""
if not torch.cuda.is_available():
warnings.warn('test_amp_gpu_ddp cannot run.'
' Rerun on a GPU node to run this test')
warnings.warn('test_amp_gpu_ddp cannot run. Rerun on a GPU node to run this test')
return
if not torch.cuda.device_count() > 1:
warnings.warn('test_amp_gpu_ddp cannot run.'
' Rerun on a node with 2+ GPUs to run this test')
warnings.warn('test_amp_gpu_ddp cannot run. Rerun on a node with 2+ GPUs to run this test')
return
# simulate setting slurm flags
@@ -608,7 +235,7 @@ def test_amp_gpu_ddp_slurm_managed():
model = LightningTestModel(hparams)
trainer_options = dict(
show_progress_bar=True,
progress_bar=True,
max_nb_epochs=1,
gpus=[0],
distributed_backend='ddp',
@@ -653,7 +280,7 @@ def test_amp_gpu_ddp_slurm_managed():
if trainer.use_ddp:
# on hpc this would work fine... but need to hack it for the purpose of the test
trainer.model = pretrained_model
trainer.optimizers, trainer.lr_schedulers = pretrained_model.configure_optimizers()
trainer.optimizers = pretrained_model.configure_optimizers()
# test HPC loading / saving
trainer.hpc_save(save_dir, exp)
@@ -666,6 +293,33 @@ def test_amp_gpu_ddp_slurm_managed():
clear_save_dir()
def test_early_stopping_cpu_model():
"""
Test each of the trainer options
:return:
"""
stopping = EarlyStopping()
trainer_options = dict(
early_stop_callback=stopping,
gradient_clip=1.0,
overfit_pct=0.20,
track_grad_norm=2,
print_nan_grads=True,
progress_bar=False,
experiment=get_exp(),
train_percent_check=0.1,
val_percent_check=0.1
)
model, hparams = get_model()
run_gpu_model_test(trainer_options, model, hparams, on_gpu=False)
# test freeze on cpu
model.freeze()
model.unfreeze()
def test_cpu_model_with_amp():
"""
Make sure model trains on CPU
@@ -673,7 +327,7 @@ def test_cpu_model_with_amp():
"""
trainer_options = dict(
show_progress_bar=False,
progress_bar=False,
experiment=get_exp(),
max_nb_epochs=1,
train_percent_check=0.4,
@@ -694,7 +348,7 @@ def test_cpu_model():
"""
trainer_options = dict(
show_progress_bar=False,
progress_bar=False,
experiment=get_exp(),
max_nb_epochs=1,
train_percent_check=0.4,
@@ -717,9 +371,8 @@ def test_all_features_cpu_model():
overfit_pct=0.20,
track_grad_norm=2,
print_nan_grads=True,
show_progress_bar=False,
progress_bar=False,
experiment=get_exp(),
accumulate_grad_batches=2,
max_nb_epochs=1,
train_percent_check=0.4,
val_percent_check=0.4
@@ -735,13 +388,12 @@ def test_single_gpu_model():
:return:
"""
if not torch.cuda.is_available():
warnings.warn('test_single_gpu_model cannot run.'
' Rerun on a GPU node to run this test')
warnings.warn('test_single_gpu_model cannot run. Rerun on a GPU node to run this test')
return
model, hparams = get_model()
trainer_options = dict(
show_progress_bar=False,
progress_bar=False,
max_nb_epochs=1,
train_percent_check=0.1,
val_percent_check=0.1,
@@ -757,16 +409,14 @@ def test_multi_gpu_model_dp():
:return:
"""
if not torch.cuda.is_available():
warnings.warn('test_multi_gpu_model_dp cannot run.'
' Rerun on a GPU node to run this test')
warnings.warn('test_multi_gpu_model_dp cannot run. Rerun on a GPU node to run this test')
return
if not torch.cuda.device_count() > 1:
warnings.warn('test_multi_gpu_model_dp cannot run.'
' Rerun on a node with 2+ GPUs to run this test')
warnings.warn('test_multi_gpu_model_dp cannot run. Rerun on a node with 2+ GPUs to run this test')
return
model, hparams = get_model()
trainer_options = dict(
show_progress_bar=False,
progress_bar=False,
max_nb_epochs=1,
train_percent_check=0.1,
val_percent_check=0.1,
@@ -785,12 +435,10 @@ def test_amp_gpu_dp():
:return:
"""
if not torch.cuda.is_available():
warnings.warn('test_amp_gpu_dp cannot run.'
' Rerun on a GPU node to run this test')
warnings.warn('test_amp_gpu_dp cannot run. Rerun on a GPU node to run this test')
return
if not torch.cuda.device_count() > 1:
warnings.warn('test_amp_gpu_dp cannot run.'
' Rerun on a node with 2+ GPUs to run this test')
warnings.warn('test_amp_gpu_dp cannot run. Rerun on a node with 2+ GPUs to run this test')
return
model, hparams = get_model()
trainer_options = dict(
@@ -803,6 +451,60 @@ def test_amp_gpu_dp():
run_gpu_model_test(trainer_options, model, hparams)
def test_multi_gpu_model_ddp():
"""
Make sure DDP works
:return:
"""
if not torch.cuda.is_available():
warnings.warn('test_multi_gpu_model_ddp cannot run. Rerun on a GPU node to run this test')
return
if not torch.cuda.device_count() > 1:
warnings.warn('test_multi_gpu_model_ddp cannot run. Rerun on a node with 2+ GPUs to run this test')
return
os.environ['MASTER_PORT'] = str(np.random.randint(12000, 19000, 1)[0])
model, hparams = get_model()
trainer_options = dict(
progress_bar=False,
max_nb_epochs=1,
train_percent_check=0.4,
val_percent_check=0.2,
gpus=[0, 1],
distributed_backend='ddp'
)
run_gpu_model_test(trainer_options, model, hparams)
def test_amp_gpu_ddp():
"""
Make sure DDP + AMP work
:return:
"""
if not torch.cuda.is_available():
warnings.warn('test_amp_gpu_ddp cannot run. Rerun on a GPU node to run this test')
return
if not torch.cuda.device_count() > 1:
warnings.warn('test_amp_gpu_ddp cannot run. Rerun on a node with 2+ GPUs to run this test')
return
os.environ['MASTER_PORT'] = str(np.random.randint(12000, 19000, 1)[0])
hparams = get_hparams()
model = LightningTestModel(hparams)
trainer_options = dict(
progress_bar=True,
max_nb_epochs=1,
gpus=[0, 1],
distributed_backend='ddp',
use_amp=True
)
run_gpu_model_test(trainer_options, model, hparams)
def test_ddp_sampler_error():
"""
Make sure DDP + AMP work
@@ -825,50 +527,19 @@ def test_ddp_sampler_error():
trainer = Trainer(
experiment=exp,
show_progress_bar=False,
progress_bar=False,
max_nb_epochs=1,
gpus=[0, 1],
distributed_backend='ddp',
use_amp=True
)
with pytest.warns(UserWarning):
with pytest.raises(MisconfigurationException):
trainer.get_dataloaders(model)
clear_save_dir()
def test_multiple_val_dataloader():
"""
Verify multiple val_dataloader
:return:
"""
hparams = get_hparams()
model = LightningTestModel(hparams)
save_dir = init_save_dir()
# exp file to get meta
trainer_options = dict(
max_nb_epochs=1,
val_percent_check=0.1,
train_percent_check=0.1,
)
# fit model
trainer = Trainer(**trainer_options)
result = trainer.fit(model)
# verify tng completed
assert result == 1
# verify there are 2 val loaders
assert len(trainer.val_dataloader) == 2, 'Multiple val_dataloaders not initiated properly'
# make sure predictions are good for each val set
[run_prediction(dataloader, trainer.model) for dataloader in trainer.val_dataloader]
# ------------------------------------------------------------------------
# UTILS
# ------------------------------------------------------------------------
@@ -903,7 +574,7 @@ def run_gpu_model_test(trainer_options, model, hparams, on_gpu=True):
if trainer.use_ddp:
# on hpc this would work fine... but need to hack it for the purpose of the test
trainer.model = pretrained_model
trainer.optimizers, trainer.lr_schedulers = pretrained_model.configure_optimizers()
trainer.optimizers = pretrained_model.configure_optimizers()
# test HPC loading / saving
trainer.hpc_save(save_dir, exp)
@@ -918,8 +589,8 @@ def get_hparams(continue_training=False, hpc_exp_number=0):
args = {
'drop_prob': 0.2,
'batch_size': 32,
'in_features': 28 * 28,
'learning_rate': 0.001 * 8,
'in_features': 28*28,
'learning_rate': 0.001*8,
'optimizer_name': 'adam',
'data_root': os.path.join(root_dir, 'mnist'),
'out_features': 10,
@@ -933,22 +604,18 @@ def get_hparams(continue_training=False, hpc_exp_number=0):
return hparams
def get_model(use_test_model=False):
def get_model():
# set up model with these hyperparams
hparams = get_hparams()
if use_test_model:
model = LightningTestModel(hparams)
else:
model = LightningTemplateModel(hparams)
model = LightningTemplateModel(hparams)
return model, hparams
def get_exp(debug=True, version=None):
def get_exp(debug=True):
# set up exp object without actually saving logs
root_dir = os.path.dirname(os.path.realpath(__file__))
exp = Experiment(debug=debug, save_dir=root_dir, name='tests_tt_dir', version=version)
exp = Experiment(debug=debug, save_dir=root_dir, name='tests_tt_dir')
return exp
@@ -1008,13 +675,13 @@ def run_prediction(dataloader, trained_model):
print(val_acc)
assert val_acc > 0.50, 'this model is expected to get > 0.50 in test set (it got %f)' % val_acc
assert val_acc > 0.50, f'this model is expected to get > 0.50 in test set (it got {val_acc})'
def assert_ok_acc(trainer):
# this model should get 0.80+ acc
acc = trainer.tng_tqdm_dic['val_acc']
assert acc > 0.50, 'model failed to get expected 0.50 validation accuracy. Got: %f' % acc
assert acc > 0.50, f'model failed to get expected 0.50 validation accuracy. Got: {acc}'
if __name__ == '__main__':
-47
View File
@@ -1,47 +0,0 @@
# this file is *not* meant to cover or endorse the use of tox or pytest or testing in general,
#
# It's meant to show the use of:
#
# - check-manifest
# confirm items checked into vcs are in your segdist
# - python setup.py check
# confirm required package meta-data in setup.py
# - readme_renderer (when using a ReStructuredText README)
# confirms your long_description will render correctly on PyPI.
#
# and also to help confirm pull requests to this project.
[tox]
envlist = py{35,36,37}
[pytest]
log_cli = 0
log_cli_level = CRITICAL
log_cli_format = %(message)s
log_file = pytest.log
log_file_level = DEBUG
log_file_format = %(asctime)s [%(levelname)8s] %(message)s (%(filename)s:%(lineno)s)
log_file_date_format=%Y-%m-%d %H:%M:%S
[testenv]
basepython =
py35: python3.5
py36: python3.6
py37: python3.7
deps =
-r requirements.txt
-r ./tests/requirements.txt
commands =
check-manifest --ignore tox.ini
python setup.py check -m -s
coverage run --source pytorch_lightning -m py.test pytorch_lightning tests examples -v --doctest-modules
flake8 .
[flake8]
exclude = .tox,*.egg,build,temp,examples/templates
select = E,W,F
doctests = True
verbose = 2
# https://pep8.readthedocs.io/en/latest/intro.html#error-codes
format = pylint
max-line-length = 100
+3
View File
@@ -11,7 +11,10 @@ rm -rf ./dist/*
python3 setup.py sdist
twine upload dist/*
# to update docs
# cd to root dir
# mkdocs gh-deploy