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William Falcon 12eb063ed9 release v0.3.6.6 2019-07-28 12:12:14 -04:00
86 changed files with 2082 additions and 5817 deletions
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# see https://docs.codecov.io/docs/codecov-yaml
# Validation check:
# $ curl --data-binary @.codecov.yml https://codecov.io/validate
codecov:
notify:
require_ci_to_pass: yes
coverage:
precision: 0 # 2 = xx.xx%, 0 = xx%
round: nearest # how coverage is rounded: down/up/nearest
range: 40...100 # custom range of coverage colors from red -> yellow -> green
status:
# https://codecov.readme.io/v1.0/docs/commit-status
project:
default:
against: auto
target: 99% # specify the target coverage for each commit status
threshold: 20% # allow this little decrease on project
# https://github.com/codecov/support/wiki/Filtering-Branches
# branches: master
if_ci_failed: error
# https://github.com/codecov/support/wiki/Patch-Status
patch:
default:
against: auto
target: 40% # specify the target "X%" coverage to hit
# threshold: 50% # allow this much decrease on patch
changes: false
parsers:
gcov:
branch_detection:
conditional: true
loop: true
macro: false
method: false
javascript:
enable_partials: false
comment:
layout: header, diff
require_changes: false
behavior: default # update if exists else create new
# branches: *
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# Contributor Covenant Code of Conduct
## Our Pledge
In the interest of fostering an open and welcoming environment, we as
contributors and maintainers pledge to making participation in our project and
our community a harassment-free experience for everyone, regardless of age, body
size, disability, ethnicity, sex characteristics, gender identity and expression,
level of experience, education, socio-economic status, nationality, personal
appearance, race, religion, or sexual identity and orientation.
## Our Standards
Examples of behavior that contributes to creating a positive environment
include:
* Using welcoming and inclusive language
* Being respectful of differing viewpoints and experiences
* Gracefully accepting constructive criticism
* Focusing on what is best for the community
* Showing empathy towards other community members
Examples of unacceptable behavior by participants include:
* The use of sexualized language or imagery and unwelcome sexual attention or
advances
* Trolling, insulting/derogatory comments, and personal or political attacks
* Public or private harassment
* Publishing others' private information, such as a physical or electronic
address, without explicit permission
* Other conduct which could reasonably be considered inappropriate in a
professional setting
## Our Responsibilities
Project maintainers are responsible for clarifying the standards of acceptable
behavior and are expected to take appropriate and fair corrective action in
response to any instances of unacceptable behavior.
Project maintainers have the right and responsibility to remove, edit, or
reject comments, commits, code, wiki edits, issues, and other contributions
that are not aligned to this Code of Conduct, or to ban temporarily or
permanently any contributor for other behaviors that they deem inappropriate,
threatening, offensive, or harmful.
## Scope
This Code of Conduct applies both within project spaces and in public spaces
when an individual is representing the project or its community. Examples of
representing a project or community include using an official project e-mail
address, posting via an official social media account, or acting as an appointed
representative at an online or offline event. Representation of a project may be
further defined and clarified by project maintainers.
## Enforcement
Instances of abusive, harassing, or otherwise unacceptable behavior may be
reported by contacting the project team at waf2107@columbia.edu. All
complaints will be reviewed and investigated and will result in a response that
is deemed necessary and appropriate to the circumstances. The project team is
obligated to maintain confidentiality with regard to the reporter of an incident.
Further details of specific enforcement policies may be posted separately.
Project maintainers who do not follow or enforce the Code of Conduct in good
faith may face temporary or permanent repercussions as determined by other
members of the project's leadership.
## Attribution
This Code of Conduct is adapted from the [Contributor Covenant][homepage], version 1.4,
available at https://www.contributor-covenant.org/version/1/4/code-of-conduct.html
[homepage]: https://www.contributor-covenant.org
For answers to common questions about this code of conduct, see
https://www.contributor-covenant.org/faq
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# Contributing
Welcome to the PyTorch Lightning community! We're building the most advanced research platform on the planet to implement the latest, best practices that the amazing PyTorch team rolls out!
## One less thing to remember
Simplify the API as much as possible from the user perspective. Any additions or improvements should minimize things the user needs to remember.
For example: One benefit of the validation_step is that the user doesn't have to remember to set the model to .eval(). This avoids all sorts of subtle errors the user could make.
## Lightning Design Principles
We encourage all sorts of contributions you're interested in adding! When coding for lightning, please follow these principles.
#### No PyTorch interference
We don't want to add any abstractions on top of pure PyTorch. This gives researchers all the control they need without having to learn yet another framework.
#### Simple Internal Code
It's useful for users to look at the code and understand very quickly what's happening. Many users won't be engineers. Thus we need to value clear, simple code over condensed ninja moves. While that's super cool, this isn't the project for that :)
#### Force User Decisions To Best Practices
There are 1,000 ways to do something. However, something eventually becomes standard practice that everyone does. Thus we pick one way of doing it and force everyone to do it this way. A good example is accumulated gradients. There are many ways to implement, we just pick one and force users to use that one. A bad forced decision would be to make users use a specific library to do something.
When something becomes a best practice, we add it to the framework. This likely looks like code in utils or in the model file that everyone keeps adding over and over again across projects. When this happens, bring that code inside the trainer and add a flag for it.
#### Simple External API
What makes sense to you may not make sense to others. Create an issue with an API change suggestion and validate that it makes sense for others. Treat code changes how you treat a startup: validate that it's a needed feature, then add if it makes sense for many people.
#### Gain User Trust
As a researcher you can't have any part of your code going wrong. So, make thorough tests that ensure an implementation of a new trick or subbtle change is correct.
## Contribution types
Currently looking for help implementing new features or adding bug fixes.
A lot of good work has already been done in project mechanics (requirements.txt, setup.py, pep8, badges, ci, etc...) we're in a good state there thanks to all the early contributors (even pre-beta release)!
## Bug fixes:
1. Submit a github issue.
2. Fix it.
3. Submit a PR!
## New Features:
1. Submit a github issue.
2. We'll agree on the feature scope.
3. Submit a PR! (with updated docs and tests 🙃).
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---
name: Bug report
about: Create a report to help us improve
title: ''
labels: bug
assignees: ''
---
### Common bugs:
1. Tensorboard not showing in Jupyter-notebook see [issue 79](https://github.com/williamFalcon/pytorch-lightning/issues/79).
2. PyTorch 1.1.0 vs 1.2.0 support [see FAQ](https://github.com/williamFalcon/pytorch-lightning#faq)
**Describe the bug**
A clear and concise description of what the bug is.
**To Reproduce**
Steps to reproduce the behavior:
1. Go to '...'
2. Click on '....'
3. Scroll down to '....'
4. See error
**Expected behavior**
A clear and concise description of what you expected to happen.
**Screenshots**
If applicable, add screenshots to help explain your problem.
**Desktop (please complete the following information):**
- OS: [e.g. iOS]
- Browser [e.g. chrome, safari]
- Version [e.g. 22]
**Additional context**
Add any other context about the problem here.
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---
name: Feature request
about: Suggest an idea for this project
title: ''
labels: enhancement, help wanted
assignees: ''
---
**Is your feature request related to a problem? Please describe.**
A clear and concise description of what the problem is. Ex. I'm always frustrated when [...]
**Describe the solution you'd like**
A clear and concise description of what you want to happen.
**Describe alternatives you've considered**
A clear and concise description of any alternative solutions or features you've considered.
**Additional context**
Add any other context or screenshots about the feature request here.
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---
name: How to question
about: Asking how-to questions
title: ''
labels: question
assignees: ''
---
### Before asking:
1. search the issues.
2. search the docs.
If you still can't find what you need:
#### What is your question?
#### Code
Please paste a code snippet if your question requires it!
#### What have you tried?
#### What's your environment?
- conda version (no venv)
- PyTorch version
- Lightning version
- Test-tube version
@@ -1,17 +0,0 @@
---
name: Typos and doc fixes
about: Typos and doc fixes
title: ''
labels: typo
assignees: ''
---
For typos and doc fixes, please go ahead and:
1. Create an issue.
2. Fix the typo.
3. Submit a PR.
Thanks!
-16
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# Before submitting
- Was this discussed/approved via a Github issue? (no need for typos, doc improvements)
- Did you read the [contributor guideline](https://github.com/williamFalcon/pytorch-lightning/blob/master/.github/CONTRIBUTING.md)?
- Did you make sure to update the docs?
- Did you write any new necessary tests?
## What does this PR do?
Fixes # (issue).
## PR review
Anyone in the community is free to review the PR once the tests have passed.
If we didn't discuss your PR in Github issues there's a high chance it will not be merged.
## Did you have fun?
Make sure you had fun coding 🙃
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pip-wheel-metadata/
test_tube_exp/
tests/tests_tt_dir/
tests/save_dir
default/
# Byte-compiled / optimized / DLL files
__pycache__/
+1 -1
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@@ -16,4 +16,4 @@ formats: all
python:
version: 3.7
install:
- requirements: docs/requirements.txt
- requirements: docs/doc_requirements.txt
+10 -64
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@@ -1,70 +1,16 @@
# vim ft=yaml
# After changing this file, check it on:
# http://yaml-online-parser.appspot.com/
# See doc/travis_notes.txt for some guidelines
# this file is *not* meant to cover or endorse the use of travis, but rather to
# help confirm pull requests to this project.
env:
global:
- DISPLAY=""
language: python
matrix:
include:
- os: linux
dist: xenial # Ubuntu 16.04
python: 3.6
env: TOXENV=py36
- os: linux
dist: bionic # Ubuntu 18.04
python: 3.6
env: TOXENV=py36
- os: linux
dist: bionic # Ubuntu 18.04
python: 3.7
env: TOXENV=py37
- os: osx
osx_image: xcode9.4
language: generic
env: TOXENV=py36
addons:
homebrew:
# update: true
packages: python3
before_install:
- pip3 install virtualenv
- virtualenv -p python3 ~/venv
- source ~/venv/bin/activate
# - os: windows
# language: minimal
# before_install:
# - choco install python3
# - export PATH="/c/Python37:/c/Python37/Scripts:$PATH"
# env: TOXENV=py37
# See http://docs.travis-ci.com/user/caching/#pip-cache
python:
- "3.7"
# command to install dependencies
cache: pip
install:
- pip install -e .
- pip install -r requirements.txt
- pip install -r ./tests/requirements.txt
- pip --version ; pip list
- pip install -U numpy
# keep build from timing out
dist: xenial
# command to run tests
script:
# integration
- tox --sitepackages
- python setup.py install --dry-run
after_success:
- coverage report
# disable auto coverage bc it isn't accurate since it misses gpu code.
# to get coverage, run local and push results
# - codecov
notifications:
email: false
- py.test # or py.test for Python versions 3.5 and below
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MIT License
Copyright (c) 2019 William Falcon
Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and associated documentation files (the "Software"), to deal
in the Software without restriction, including without limitation the rights
to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
copies of the Software, and to permit persons to whom the Software is
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The above copyright notice and this permission notice shall be included in all
copies or substantial portions of the Software.
THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
SOFTWARE.
-201
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+6 -39
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@@ -1,42 +1,9 @@
# Manifest syntax https://docs.python.org/2/distutils/sourcedist.html
graft wheelhouse
graft docs
recursive-include birl *.py
recursive-exclude __pycache__ *.py[cod] *.orig
include COPYING
include AUTHORS
# Include the README
include *.md
recursive-include src/einsteinpy/tests *.py *.html
# Include the license file
include LICENSE
exclude *.sh
exclude *.toml
exclude *.svg
recursive-include pytorch_lightning *.py
# include examples
recursive-include examples *.py
recursive-include examples *.md
recursive-include examples *.sh
# exclude tests from package
recursive-exclude tests *
recursive-exclude site *
exclude tests
# Exclude the documentation files
recursive-exclude docs *
exclude docs
# Include the Requirements
include requirements.txt
# Exclude build configs
exclude *.yml
prune .git
prune .github
prune notebook*
prune temp*
prune test*
prune docs/source/examples/.ipynb_checkpoints
global-exclude *.py[cod] __pycache__ *.so *.dylib
+84 -205
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@@ -1,30 +1,24 @@
<div align="center">
<p align="center">
<a href="https://williamfalcon.github.io/pytorch-lightning/">
<img alt="" src="https://github.com/williamFalcon/pytorch-lightning/blob/master/docs/source/_static/lightning_logo.png" width="50">
</a>
</p>
<h3 align="center">
Pytorch Lightning
</h3>
<p align="center">
The Keras for ML researchers using PyTorch. More control. Less boilerplate.
</p>
![Logo](./docs/source/_static/lightning_logo_small.png)
<p align="center">
<a href="https://badge.fury.io/py/pytorch-lightning"><img src="https://badge.fury.io/py/pytorch-lightning.svg" alt="PyPI version" height="18"></a>
<a href="https://pepy.tech/project/pytorch-lightning"><img src="https://pepy.tech/badge/pytorch-lightning" alt="PyPI version" height="18"></a>
<a href="https://github.com/williamFalcon/pytorch-lightning/tree/master/tests"><img src="https://github.com/williamFalcon/pytorch-lightning/blob/master/coverage.svg"></a>
<a href="https://travis-ci.org/williamFalcon/pytorch-lightning"><img src="https://travis-ci.org/williamFalcon/pytorch-lightning.svg?branch=master"></a>
<a href="https://williamfalcon.github.io/pytorch-lightning/"><img src="https://readthedocs.org/projects/pytorch-lightning/badge/?version=latest"></a>
<a href="https://github.com/williamFalcon/pytorch-lightning/blob/master/COPYING"><img src="https://img.shields.io/badge/License-MIT-yellow.svg"></a>
</p>
# PyTorch Lightning
**The lightweight PyTorch wrapper for ML researchers. Scale your models. Write less boilerplate.**
[![PyPI Status](https://badge.fury.io/py/pytorch-lightning.svg)](https://badge.fury.io/py/pytorch-lightning)
[![PyPI Status](https://pepy.tech/badge/pytorch-lightning)](https://pepy.tech/project/pytorch-lightning)
[![Build Status](https://travis-ci.org/williamFalcon/pytorch-lightning.svg?branch=master)](https://travis-ci.org/williamFalcon/pytorch-lightning)
[![Build status](https://ci.appveyor.com/api/projects/status/rum89d7hq8l1kfye?svg=true)](https://ci.appveyor.com/project/Borda/pytorch-lightning)
[![Coverage](https://github.com/williamFalcon/pytorch-lightning/blob/master/docs/source/_static/coverage.svg)](https://github.com/williamFalcon/pytorch-lightning/tree/master/tests#running-coverage)
[![CodeFactor](https://www.codefactor.io/repository/github/borda/pytorch-lightning/badge)](https://www.codefactor.io/repository/github/borda/pytorch-lightning)
[![ReadTheDocs](https://readthedocs.org/projects/pytorch-lightning/badge/?version=latest)](https://pytorch-lightning.readthedocs.io/en/latest)
[![Gitter](https://badges.gitter.im/PyTorch-Lightning/community.svg)](https://gitter.im/PyTorch-Lightning/community?utm_source=badge&utm_medium=badge&utm_campaign=pr-badge)
[![license](https://img.shields.io/badge/License-Apache%202.0-blue.svg)](https://github.com/williamFalcon/pytorch-lightning/blob/master/LICENSE)
<!--
removed until codecov badge isn't empy. likely a config error showing nothing on master.
[![codecov](https://codecov.io/gh/Borda/pytorch-lightning/branch/master/graph/badge.svg)](https://codecov.io/gh/Borda/pytorch-lightning)
-->
</div>
Simple installation from PyPI
```bash
pip install pytorch-lightning
```
@@ -33,40 +27,18 @@ pip install pytorch-lightning
**[View the docs here](https://williamfalcon.github.io/pytorch-lightning/)**
## What is it?
Lightning is a very lightweight wrapper on PyTorch. This means you don't have to learn a new library. To use Lightning, simply refactor your research code into the [LightningModule](https://github.com/williamFalcon/pytorch-lightning#how-do-i-do-use-it) format and Lightning will automate the rest. Lightning guarantees tested, correct, modern best practices for the automated parts.
Lightning defers training and validation loop logic to you. It guarantees correct, modern best practices for the core training logic.
## Starting a new project?
[Use our seed-project aimed at reproducibility!](https://github.com/williamFalcon/pytorch-lightning-conference-seed)
## Why do I want to use lightning?
Every research project starts the same, a model, a training loop, validation loop, etc. As your research advances, you're likely to need distributed training, 16-bit precision, checkpointing, gradient accumulation, etc.
When starting a new project the last thing you want to do is recode a training loop, model loading/saving, distributed training, when to validate, etc... You're likely to spend a long time ironing out all the bugs without even getting to the core of your research.
Lightning sets up all the boilerplate state-of-the-art training for you so you can focus on the research.
---
## README Table of Contents
- [How do I use it](https://github.com/williamFalcon/pytorch-lightning#how-do-i-do-use-it)
- [What lightning automates](https://github.com/williamFalcon/pytorch-lightning#what-does-lightning-control-for-me)
- [Tensorboard integration](https://github.com/williamFalcon/pytorch-lightning#tensorboard)
- [Lightning features](https://github.com/williamFalcon/pytorch-lightning#lightning-automates-all-of-the-following-each-is-also-configurable)
- [Demos](https://github.com/williamFalcon/pytorch-lightning#demo)
- [Tutorials](https://github.com/williamFalcon/pytorch-lightning#tutorials)
- [Contributing](https://github.com/williamFalcon/pytorch-lightning/blob/master/CONTRIBUTING.md)
- [Bleeding edge install](https://github.com/williamFalcon/pytorch-lightning#bleeding-edge)
- [Lightning Design Principles](https://github.com/williamFalcon/pytorch-lightning#lightning-design-principles)
- [Asking for help](https://github.com/williamFalcon/pytorch-lightning#asking-for-help)
- [FAQ](https://github.com/williamFalcon/pytorch-lightning#faq)
---
With lightning, you guarantee those parts of your code work so you can focus on what the meat of the research: Data and training, validation loop logic. Don't worry about multiple gpus or speeding up your code, lightning will do that for you!
## How do I do use it?
Think about Lightning as refactoring your research code instead of using a new framework. The research code goes into a [LightningModule]((https://williamfalcon.github.io/pytorch-lightning/LightningModule/RequiredTrainerInterface/)) which you fit using a Trainer.
The LightningModule defines a *system* such as seq-2-seq, GAN, etc... It can ALSO define a simple classifier such as the example below.
To use lightning do 2 things:
1. [Define a LightningModule](https://williamfalcon.github.io/pytorch-lightning/LightningModule/RequiredTrainerInterface/)
1. [Define a LightningModel](https://williamfalcon.github.io/pytorch-lightning/LightningModule/RequiredTrainerInterface/)
```python
import os
import torch
@@ -75,118 +47,93 @@ from torch.utils.data import DataLoader
from torchvision.datasets import MNIST
import torchvision.transforms as transforms
import pytorch_lightning as pl
import pytorch_lightning as ptl
class CoolSystem(pl.LightningModule):
class CoolModel(ptl.LightningModule):
def __init__(self):
super(CoolSystem, self).__init__()
super(CoolModel, self).__init__()
# not the best model...
self.l1 = torch.nn.Linear(28 * 28, 10)
def forward(self, x):
return torch.relu(self.l1(x.view(x.size(0), -1)))
def my_loss(self, y_hat, y):
return F.cross_entropy(y_hat, y)
def training_step(self, batch, batch_nb):
# REQUIRED
x, y = batch
y_hat = self.forward(x)
return {'loss': F.cross_entropy(y_hat, y)}
return {'loss': self.my_loss(y_hat, y)}
def validation_step(self, batch, batch_nb):
# OPTIONAL
x, y = batch
y_hat = self.forward(x)
return {'val_loss': F.cross_entropy(y_hat, y)}
return {'val_loss': self.my_loss(y_hat, y)}
def validation_end(self, outputs):
# OPTIONAL
avg_loss = torch.stack([x['val_loss'] for x in outputs]).mean()
return {'avg_val_loss': avg_loss}
def configure_optimizers(self):
# REQUIRED
# can return multiple optimizers and learning_rate schedulers
return torch.optim.Adam(self.parameters(), lr=0.02)
return [torch.optim.Adam(self.parameters(), lr=0.02)]
@pl.data_loader
def train_dataloader(self):
# REQUIRED
@ptl.data_loader
def tng_dataloader(self):
return DataLoader(MNIST(os.getcwd(), train=True, download=True, transform=transforms.ToTensor()), batch_size=32)
@pl.data_loader
@ptl.data_loader
def val_dataloader(self):
# OPTIONAL
return DataLoader(MNIST(os.getcwd(), train=True, download=True, transform=transforms.ToTensor()), batch_size=32)
@pl.data_loader
@ptl.data_loader
def test_dataloader(self):
# OPTIONAL
return DataLoader(MNIST(os.getcwd(), train=True, download=True, transform=transforms.ToTensor()), batch_size=32)
```
2. Fit with a [trainer](https://williamfalcon.github.io/pytorch-lightning/Trainer/)
```python
from pytorch_lightning import Trainer
from test_tube import Experiment
model = CoolSystem()
# most basic trainer, uses good defaults
trainer = Trainer()
trainer.fit(model)
```
Or with tensorboard logger and some options turned on such as multi-gpu, etc...
```python
from test_tube import Experiment
# PyTorch summarywriter with a few bells and whistles
model = CoolModel()
exp = Experiment(save_dir=os.getcwd())
# train on cpu using only 10% of the data (for demo purposes)
# pass in experiment for automatic tensorboard logging.
trainer = Trainer(experiment=exp, max_nb_epochs=1, train_percent_check=0.1)
# train on 4 gpus (lightning chooses GPUs for you)
# trainer = Trainer(experiment=exp, max_nb_epochs=1, gpus=4)
# train on 4 gpus (you choose GPUs)
# trainer = Trainer(experiment=exp, max_nb_epochs=1, gpus=[0, 1, 3, 7])
# train on 4 gpus
# trainer = Trainer(experiment=exp, max_nb_epochs=1, gpus=[0, 1, 2, 3])
# train on 32 gpus across 4 nodes (make sure to submit appropriate SLURM job)
# trainer = Trainer(experiment=exp, max_nb_epochs=1, gpus=8, nb_gpu_nodes=4)
# trainer = Trainer(experiment=exp, max_nb_epochs=1, gpus=[0, 1, 2, 3, 4, 5, 6, 7], nb_gpu_nodes=4)
# train (1 epoch only here for demo)
trainer.fit(model)
# view tensorflow logs
print('View tensorboard logs by running\ntensorboard --logdir %s' % os.getcwd())
print(f'View tensorboard logs by running\ntensorboard --logdir {os.getcwd()}')
print('and going to http://localhost:6006 on your browser')
```
When you're all done you can even run the test set separately.
```python
trainer.test()
```
## What does lightning control for me?
Everything in gray!
You define the blue parts using the LightningModule interface:
## What does lightning control for me?
Everything!
Except for these 6 core functions which you define:
![Ouverview](./docs/source/_static/overview_flat.jpg)
```python
```{.python}
# what to do in the training loop
def training_step(self, batch, batch_nb):
def training_step(self, data_batch, batch_nb):
# what to do in the validation loop
def validation_step(self, batch, batch_nb):
def validation_step(self, data_batch, batch_nb):
# how to aggregate validation_step outputs
def validation_end(self, outputs):
# and your dataloaders
def train_dataloader():
def tng_dataloader():
def val_dataloader():
def test_dataloader():
```
@@ -195,13 +142,13 @@ def test_dataloader():
```python
# define what happens for training here
def training_step(self, batch, batch_nb):
x, y = batch
def training_step(self, data_batch, batch_nb):
x, y = data_batch
# define your own forward and loss calculation
hidden_states = self.encoder(x)
# even as complex as a seq-2-seq + attn model
# even as complex as a seq-2seq + attn model
# (this is just a toy, non-working example to illustrate)
start_token = '<SOS>'
last_hidden = torch.zeros(...)
@@ -222,8 +169,8 @@ def training_step(self, batch, batch_nb):
```python
# define what happens for validation here
def validation_step(self, batch, batch_nb):
x, y = batch
def validation_step(self, data_batch, batch_nb):
x, y = data_batch
# or as basic as a CNN classification
out = self.forward(x)
@@ -248,23 +195,31 @@ def validation_end(self, outputs):
val_loss_mean /= len(outputs)
val_acc_mean /= len(outputs)
tqdm_dict = {'val_loss': val_loss_mean.item(), 'val_acc': val_acc_mean.item()}
return tqdm_dict
tqdm_dic = {'val_loss': val_loss_mean.item(), 'val_acc': val_acc_mean.item()}
return tqdm_dic
```
## Tensorboard
Lightning is fully integrated with tensorboard.
![tensorboard-support](./docs/source/_static/tf_loss.png)
<p align="center">
<a href="https://williamfalcon.github.io/pytorch-lightning/">
<img alt="" src="https://github.com/williamFalcon/pytorch-lightning/blob/master/docs/source/_static/tf_loss.png" width="900px">
</a>
</p>
Lightning also adds a text column with all the hyperparameters for this experiment.
![tensorboard-support](./docs/source/_static/tf_tags.png)
<p align="center">
<a href="https://williamfalcon.github.io/pytorch-lightning/">
<img alt="" src="https://github.com/williamFalcon/pytorch-lightning/blob/master/docs/source/_static/tf_tags.png" width="900px">
</a>
</p>
Simply note the path you set for the [Experiment](https://williamfalcon.github.io/test-tube/experiment_tracking/experiment/) from [test_tube](https://github.com/williamFalcon/test-tube)
```python
Simply note the path you set for the Experiment
``` {.python}
from test_tube import Experiment
from pytorch_lightning import Trainer
from pytorch-lightning import Trainer
exp = Experiment(save_dir='/some/path')
trainer = Trainer(experiment=exp)
@@ -279,29 +234,27 @@ tensorboard --logdir /some/path
## Lightning automates all of the following ([each is also configurable](https://williamfalcon.github.io/pytorch-lightning/Trainer/)):
#### Checkpointing
###### Checkpointing
- [Model saving](https://williamfalcon.github.io/pytorch-lightning/Trainer/Checkpointing/#model-saving)
- [Model loading](https://williamfalcon.github.io/pytorch-lightning/LightningModule/methods/#load-from-metrics)
- [Restoring training session](https://williamfalcon.github.io/pytorch-lightning/Trainer/Checkpointing/#restoring-training-session)
#### Computing cluster (SLURM)
###### Computing cluster (SLURM)
- [Running grid search on a cluster](https://williamfalcon.github.io/pytorch-lightning/Trainer/SLURM%20Managed%20Cluster#running-grid-search-on-a-cluster)
- [Walltime auto-resubmit](https://williamfalcon.github.io/pytorch-lightning/Trainer/SLURM%20Managed%20Cluster#walltime-auto-resubmit)
#### Debugging
###### Debugging
- [Fast dev run](https://williamfalcon.github.io/pytorch-lightning/Trainer/debugging/#fast-dev-run)
- [Inspect gradient norms](https://williamfalcon.github.io/pytorch-lightning/Trainer/debugging/#inspect-gradient-norms)
- [Log GPU usage](https://williamfalcon.github.io/pytorch-lightning/Trainer/debugging/#Log-gpu-usage)
- [Make model overfit on subset of data](https://williamfalcon.github.io/pytorch-lightning/Trainer/debugging/#make-model-overfit-on-subset-of-data)
- [Print the parameter count by layer](https://williamfalcon.github.io/pytorch-lightning/Trainer/debugging/#print-the-parameter-count-by-layer)
- [Print which gradients are nan](https://williamfalcon.github.io/pytorch-lightning/Trainer/debugging/#print-which-gradients-are-nan)
- [Print input and output size of every module in system](https://williamfalcon.github.io/pytorch-lightning/LightningModule/properties/#example_input_array)
- [Pring which gradients are nan](https://williamfalcon.github.io/pytorch-lightning/Trainer/debugging/#print-which-gradients-are-nan)
#### Distributed training
###### Distributed training
- [16-bit mixed precision](https://williamfalcon.github.io/pytorch-lightning/Trainer/Distributed%20training/#16-bit-mixed-precision)
- [Multi-GPU](https://williamfalcon.github.io/pytorch-lightning/Trainer/Distributed%20training/#Multi-GPU)
@@ -310,7 +263,7 @@ tensorboard --logdir /some/path
- [Self-balancing architecture](https://williamfalcon.github.io/pytorch-lightning/Trainer/Distributed%20training/#self-balancing-architecture)
#### Experiment Logging
###### Experiment Logging
- [Display metrics in progress bar](https://williamfalcon.github.io/pytorch-lightning/Trainer/Logging/#display-metrics-in-progress-bar)
- [Log metric row every k batches](https://williamfalcon.github.io/pytorch-lightning/Trainer/Logging/#log-metric-row-every-k-batches)
@@ -320,20 +273,18 @@ tensorboard --logdir /some/path
- [Snapshot code for a training run](https://williamfalcon.github.io/pytorch-lightning/Trainer/Logging/#snapshot-code-for-a-training-run)
- [Write logs file to csv every k batches](https://williamfalcon.github.io/pytorch-lightning/Trainer/Logging/#write-logs-file-to-csv-every-k-batches)
#### Training loop
###### Training loop
- [Accumulate gradients](https://williamfalcon.github.io/pytorch-lightning/Trainer/Training%20Loop/#accumulated-gradients)
- [Force training for min or max epochs](https://williamfalcon.github.io/pytorch-lightning/Trainer/Training%20Loop/#force-training-for-min-or-max-epochs)
- [Early stopping](https://williamfalcon.github.io/pytorch-lightning/Trainer/Training%20Loop/#early-stopping)
- [Force disable early stop](https://williamfalcon.github.io/pytorch-lightning/Trainer/Training%20Loop/#force-disable-early-stop)
- [Gradient Clipping](https://williamfalcon.github.io/pytorch-lightning/Trainer/Training%20Loop/#gradient-clipping)
- [Hooks](https://williamfalcon.github.io/pytorch-lightning/Trainer/hooks/)
- [Learning rate scheduling](https://williamfalcon.github.io/pytorch-lightning/LightningModule/RequiredTrainerInterface/#configure_optimizers)
- [Use multiple optimizers (like GANs)](https://williamfalcon.github.io/pytorch-lightning/LightningModule/RequiredTrainerInterface/#configure_optimizers)
- [Set how much of the training set to check (1-100%)](https://williamfalcon.github.io/pytorch-lightning/Trainer/Training%20Loop/#set-how-much-of-the-training-set-to-check)
- [Step optimizers at arbitrary intervals](https://williamfalcon.github.io/pytorch-lightning/Trainer/hooks/#optimizer_step)
#### Validation loop
###### Validation loop
- [Check validation every n epochs](https://williamfalcon.github.io/pytorch-lightning/Trainer/Validation%20loop/#check-validation-every-n-epochs)
- [Hooks](https://williamfalcon.github.io/pytorch-lightning/Trainer/hooks/)
@@ -342,18 +293,16 @@ tensorboard --logdir /some/path
- [Set validation check frequency within 1 training epoch](https://williamfalcon.github.io/pytorch-lightning/Trainer/Validation%20loop/#set-validation-check-frequency-within-1-training-epoch)
- [Set the number of validation sanity steps](https://williamfalcon.github.io/pytorch-lightning/Trainer/Validation%20loop/#set-the-number-of-validation-sanity-steps)
#### Testing loop
- [Run test set](https://williamfalcon.github.io/pytorch-lightning/Trainer/Testing%20loop/)
## Demo
```bash
# install lightning
pip install pytorch_lightning
pip install pytorch-lightning
# clone lightning for the demo
git clone https://github.com/williamFalcon/pytorch-lightning.git
cd pytorch-lightning
cd examples/new_project_templates/
cd pytorch_lightning/examples/new_project_templates/
# all of the following demos use the SAME model to show no modification needs to be made to your code
@@ -367,78 +316,8 @@ python single_gpu_node_template.py --gpus "0,1"
python multi_node_cluster_template.py --nb_gpu_nodes 4 --gpus '0,1,2,3,4,5,6,7'
```
## Tutorials
- [Basic Lightning use](https://towardsdatascience.com/supercharge-your-ai-research-with-pytorch-lightning-337948a99eec)
- [9 key speed features in Pytorch-Lightning](https://towardsdatascience.com/9-tips-for-training-lightning-fast-neural-networks-in-pytorch-8e63a502f565)
- [SLURM, multi-node training with Lightning](https://towardsdatascience.com/trivial-multi-node-training-with-pytorch-lightning-ff75dfb809bd)
---
## Asking for help
Welcome to the Lightning community!
If you have any questions, feel free to:
1. [read the docs](https://williamfalcon.github.io/pytorch-lightning/).
2. [Search through the issues](https://github.com/williamFalcon/pytorch-lightning/issues?utf8=%E2%9C%93&q=my++question).
3. [Ask on stackoverflow](https://stackoverflow.com/questions/ask?guided=false) with the tag pytorch-lightning.
If no one replies to you quickly enough, feel free to post the stackoverflow link to our Gitter chat!
To chat with the rest of us visit our [gitter channel](https://gitter.im/PyTorch-Lightning/community)!
---
## FAQ
**How do I use Lightning for rapid research?**
[Here's a walk-through](https://williamfalcon.github.io/pytorch-lightning/)
**Why was Lightning created?**
Lightning has 3 goals in mind:
1. Maximal flexibility while abstracting out the common boilerplate across research projects.
2. Reproducibility. If all projects use the LightningModule template, it will be much much easier to understand what's going on and where to look! It will also mean every implementation follows a standard format.
3. Democratizing PyTorch power user features. Distributed training? 16-bit? know you need them but don't want to take the time to implement? All good... these come built into Lightning.
**How does Lightning compare with Ignite and fast.ai?**
[Here's a thorough comparison](https://medium.com/@_willfalcon/pytorch-lightning-vs-pytorch-ignite-vs-fast-ai-61dc7480ad8a).
**Is this another library I have to learn?**
Nope! We use pure Pytorch everywhere and don't add unecessary abstractions!
**Are there plans to support Python 2?**
Nope.
**Are there plans to support virtualenv?**
Nope. Please use anaconda or miniconda.
**Which PyTorch versions do you support?**
- **PyTorch 1.1.0**
```bash
# install pytorch 1.1.0 using the official instructions
# install test-tube 0.6.7.6 which supports 1.1.0
pip install test-tube==0.6.7.6
# install latest Lightning version without upgrading deps
pip install -U --no-deps pytorch-lightning
```
- **PyTorch 1.2.0**
Install via pip as normal
## Custom installation
### Bleeding edge
If you can't wait for the next release, install the most up to date code with:
* using GIT (locally clone whole repo with full history)
```bash
pip install git+https://github.com/williamFalcon/pytorch-lightning.git@master --upgrade
```
* using instant zip (last state of the repo without git history)
```bash
pip install https://github.com/williamFalcon/pytorch-lightning/archive/master.zip --upgrade
```
### Any release installation
You can also install any past release from this repository:
## Bleeding edge
If you can't wait for the next release, install the most up to date code with:
```bash
pip install https://github.com/williamFalcon/pytorch-lightning/archive/0.4.4.zip --upgrade
pip install git+https://github.com/williamFalcon/pytorch-lightning.git@master --upgrade
```
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@@ -1,64 +0,0 @@
# https://www.appveyor.com/docs/appveyor-yml/
environment:
# SDK v7.0 MSVC Express 2008's SetEnv.cmd script will fail if the
# /E:ON and /V:ON options are not enabled in the batch script interpreter
# See: http://stackoverflow.com/a/13751649/163740
CMD_IN_ENV: "cmd /E:ON /V:ON /C obvci_appveyor_python_build_env.cmd"
matrix:
# Pre-installed Python versions, which Appveyor may upgrade to
# a later point release.
# See: http://www.appveyor.com/docs/installed-software#python
# - PYTHON: "C:\\Python35-x64"
# PYTHON_VERSION: "3.5.x"
# PYTHON_ARCH: "64"
# TOXENV: "py35"
- PYTHON: "C:\\Python36-x64"
PYTHON_VERSION: "3.6.x"
PYTHON_ARCH: "64"
TOXENV: "py36"
PIP_PYVER: "36"
- PYTHON: "C:\\Python37-x64"
PYTHON_VERSION: "3.7.x"
PYTHON_ARCH: "64"
TOXENV: "py37"
PIP_PYVER: "37"
build: off
# https://www.appveyor.com/docs/build-cache/
cache:
- C:\ProgramData\chocolatey\bin -> appveyor.yml
- C:\ProgramData\chocolatey\lib -> appveyor.yml
- '%LOCALAPPDATA%\pip\Cache -> appveyor.yml'
# scripts that run after cloning repository
install:
# If there is a newer build queued for the same PR, cancel this one.
# The AppVeyor 'rollout builds' option is supposed to serve the same
# purpose but it is problematic because it tends to cancel builds pushed
# directly to master instead of just PR builds (or the converse).
- SET PATH=%PYTHON%;%PYTHON%\\Scripts;%path%
- pip install -U --user pip
- pip install -r requirements.txt -f https://download.pytorch.org/whl/torch_stable.html
- pip install -r ./tests/requirements.txt
# scripts to run before tests (working directory and environment changes are persisted from the previous steps such as "before_build")
before_test:
- python --version
- pip --version
- pip list
- dir
# to run your custom scripts instead of automatic tests
test_script:
- tox --sitepackages --parallel auto
on_success:
- coverage report
# - codecov

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@@ -9,22 +9,22 @@ Otherwise, to Define a Lightning Module, implement the following methods:
**Required**:
- [training_step](RequiredTrainerInterface.md#training_step)
- [train_dataloader](RequiredTrainerInterface.md#train_dataloader)
- [configure_optimizers](RequiredTrainerInterface.md#configure_optimizers)
- [training_step](RequiredTrainerInterface.md#training_step)
- [validation_step](RequiredTrainerInterface.md#validation_step)
- [validation_end](RequiredTrainerInterface.md#validation_end)
- [configure_optimizers](RequiredTrainerInterface.md#configure_optimizers)
- [tng_dataloader](RequiredTrainerInterface.md#tng_dataloader)
- [tng_dataloader](RequiredTrainerInterface.md#tng_dataloader)
- [test_dataloader](RequiredTrainerInterface.md#test_dataloader)
**Optional**:
- [validation_step](RequiredTrainerInterface.md#validation_step)
- [validation_end](RequiredTrainerInterface.md#validation_end)
- [test_step](RequiredTrainerInterface.md#test_step)
- [test_end](RequiredTrainerInterface.md#test_end)
- [val_dataloader](RequiredTrainerInterface.md#val_dataloader)
- [test_dataloader](RequiredTrainerInterface.md#test_dataloader)
- [on_save_checkpoint](RequiredTrainerInterface.md#on_save_checkpoint)
- [on_load_checkpoint](RequiredTrainerInterface.md#on_load_checkpoint)
- [update_training_log_metrics](RequiredTrainerInterface.md#update_training_log_metrics)
- [add_model_specific_args](RequiredTrainerInterface.md#add_model_specific_args)
- [on_save_checkpoint](RequiredTrainerInterface.md#on_save_checkpoint)
- [on_load_checkpoint](RequiredTrainerInterface.md#on_load_checkpoint)
- [update_tng_log_metrics](RequiredTrainerInterface.md#update_tng_log_metrics)
- [add_model_specific_args](RequiredTrainerInterface.md#add_model_specific_args)
---
### Minimal example
@@ -36,9 +36,9 @@ from torch.utils.data import DataLoader
from torchvision.datasets import MNIST
import torchvision.transforms as transforms
import pytorch_lightning as pl
import pytorch_lightning as ptl
class CoolModel(pl.LightningModule):
class CoolModel(ptl.LightningModule):
def __init__(self):
super(CoolModel, self).__init__()
@@ -48,70 +48,45 @@ class CoolModel(pl.LightningModule):
def forward(self, x):
return torch.relu(self.l1(x.view(x.size(0), -1)))
def my_loss(self, y_hat, y):
return F.cross_entropy(y_hat, y)
def training_step(self, batch, batch_nb):
# REQUIRED
x, y = batch
y_hat = self.forward(x)
return {'loss': F.cross_entropy(y_hat, y)}
return {'loss': self.my_loss(y_hat, y)}
def validation_step(self, batch, batch_nb):
# OPTIONAL
x, y = batch
y_hat = self.forward(x)
return {'val_loss': F.cross_entropy(y_hat, y)}
return {'val_loss': self.my_loss(y_hat, y)}
def validation_end(self, outputs):
# OPTIONAL
avg_loss = torch.stack([x['val_loss'] for x in outputs]).mean()
return {'avg_val_loss': avg_loss}
def test_step(self, batch, batch_nb):
# OPTIONAL
x, y = batch
y_hat = self.forward(x)
return {'test_loss': F.cross_entropy(y_hat, y)}
def test_end(self, outputs):
# OPTIONAL
avg_loss = torch.stack([x['test_loss'] for x in outputs]).mean()
return {'avg_test_loss': avg_loss}
def configure_optimizers(self):
# REQUIRED
return [torch.optim.Adam(self.parameters(), lr=0.02)]
@pl.data_loader
def train_dataloader(self):
@ptl.data_loader
def tng_dataloader(self):
return DataLoader(MNIST(os.getcwd(), train=True, download=True, transform=transforms.ToTensor()), batch_size=32)
@pl.data_loader
@ptl.data_loader
def val_dataloader(self):
# OPTIONAL
# can also return a list of val dataloaders
return DataLoader(MNIST(os.getcwd(), train=True, download=True, transform=transforms.ToTensor()), batch_size=32)
@pl.data_loader
@ptl.data_loader
def test_dataloader(self):
# OPTIONAL
# can also return a list of test dataloaders
return DataLoader(MNIST(os.getcwd(), train=False, download=True, transform=transforms.ToTensor()), batch_size=32)
return DataLoader(MNIST(os.getcwd(), train=True, download=True, transform=transforms.ToTensor()), batch_size=32)
```
---
### How do these methods fit into the broader training?
The LightningModule interface is on the right. Each method corresponds to a part of a research project. Lightning automates everything not in blue.
<p align="center">
<a href="https://github.com/williamFalcon/pytorch-lightning/blob/master/docs/source/_static/overview_flat.jpg">
<img alt="" src="https://github.com/williamFalcon/pytorch-lightning/blob/master/docs/source/_static/overview_flat.jpg" height="900px">
</a>
</p>
## Required Methods
---
### training_step
``` {.python}
def training_step(self, batch, batch_nb)
def training_step(self, data_batch, batch_nb)
```
In this step you'd normally do the forward pass and calculate the loss for a batch. You can also do fancier things like multiple forward passes or something specific to your model.
@@ -120,7 +95,7 @@ In this step you'd normally do the forward pass and calculate the loss for a bat
| Param | description |
|---|---|
| batch | The output of your dataloader. A tensor, tuple or list |
| data_batch | The output of your dataloader. A tensor, tuple or list |
| batch_nb | Integer displaying which batch this is |
**Return**
@@ -130,14 +105,14 @@ Dictionary or OrderedDict
| key | value | is required |
|---|---|---|
| loss | tensor scalar | Y |
| progress | Dict for progress bar display. Must have only tensors | N |
| prog | Dict for progress bar display. Must have only tensors | N |
**Example**
``` {.python}
def training_step(self, batch, batch_nb):
x, y, z = batch
def training_step(self, data_batch, batch_nb):
x, y, z = data_batch
# implement your own
out = self.forward(x)
@@ -145,143 +120,46 @@ def training_step(self, batch, batch_nb):
output = {
'loss': loss, # required
'progress': {'training_loss': loss, 'batch_nb': batch_nb} # optional
'prog': {'tng_loss': loss, 'batch_nb': batch_nb} # optional
}
# return a dict
return output
```
If you define multiple optimizers, this step will also be called with an additional ```optimizer_idx``` param.
``` {.python}
# Multiple optimizers (ie: GANs)
def training_step(self, batch, batch_nb, optimizer_idx):
if optimizer_idx == 0:
# do training_step with encoder
if optimizer_idx == 1:
# do training_step with decoder
```
---
### train_dataloader
``` {.python}
@pl.data_loader
def train_dataloader(self)
```
Called by lightning during training loop. Make sure to use the @pl.data_loader decorator, this ensures not calling this function until the data are needed.
##### Return
PyTorch DataLoader
**Example**
``` {.python}
@pl.data_loader
def train_dataloader(self):
transform = transforms.Compose([transforms.ToTensor(), transforms.Normalize((0.5,), (1.0,))])
dataset = MNIST(root='/path/to/mnist/', train=True, transform=transform, download=True)
loader = torch.utils.data.DataLoader(
dataset=dataset,
batch_size=self.hparams.batch_size,
shuffle=True
)
return loader
```
---
### configure_optimizers
``` {.python}
def configure_optimizers(self)
```
Set up as many optimizers and (optionally) learning rate schedulers as you need. Normally you'd need one. But in the case of GANs or something more esoteric you might have multiple.
Lightning will call .backward() and .step() on each one in every epoch. If you use 16 bit precision it will also handle that.
**Note:** If you use multiple optimizers, training_step will have an additional ```optimizer_idx``` parameter.
##### Return
Return any of these 3 options:
Single optimizer
List or Tuple - List of optimizers
Two lists - The first list has multiple optimizers, the second a list of learning-rate schedulers
**Example**
``` {.python}
# most cases
def configure_optimizers(self):
opt = Adam(self.parameters(), lr=0.01)
return opt
# multiple optimizer case (eg: GAN)
def configure_optimizers(self):
generator_opt = Adam(self.model_gen.parameters(), lr=0.01)
disriminator_opt = Adam(self.model_disc.parameters(), lr=0.02)
return generator_opt, disriminator_opt
# example with learning_rate schedulers
def configure_optimizers(self):
generator_opt = Adam(self.model_gen.parameters(), lr=0.01)
disriminator_opt = Adam(self.model_disc.parameters(), lr=0.02)
discriminator_sched = CosineAnnealing(discriminator_opt, T_max=10)
return [generator_opt, disriminator_opt], [discriminator_sched]
```
If you need to control how often those optimizers step or override the default .step() schedule, override
the [optimizer_step](https://williamfalcon.github.io/pytorch-lightning/Trainer/hooks/#optimizer_step) hook.
## Optional Methods
---
### validation_step
``` {.python}
# if you have one val dataloader:
def validation_step(self, batch, batch_nb)
# if you have multiple val dataloaders:
def validation_step(self, batch, batch_nb, dataloader_idxdx)
def validation_step(self, data_batch, batch_nb)
```
**OPTIONAL**
If you don't need to validate you don't need to implement this method. In this step you'd normally generate examples or calculate anything of interest such as accuracy.
When the validation_step is called, the model has been put in eval mode and PyTorch gradients have been disabled. At the end of validation, model goes back to training mode and gradients are enabled.
The dict you return here will be available in the `validation_end` method.
In this step you'd normally do the forward pass and calculate the loss for a batch. You can also do fancier things like multiple forward passes or something specific to your model.
This is most likely the same as your training_step. But unlike training step, the outputs from here will go to validation_end for collation.
**Params**
| Param | description |
|---|---|
| batch | The output of your dataloader. A tensor, tuple or list |
| data_batch | The output of your dataloader. A tensor, tuple or list |
| batch_nb | Integer displaying which batch this is |
| dataloader_idx | Integer displaying which dataloader this is (only if multiple val datasets used) |
**Return**
| Return | description | optional |
|---|---|---|
| dict | Dict or OrderedDict with metrics to display in progress bar. All keys must be tensors. | Y |
| dict | Dict of OrderedDict with metrics to display in progress bar. All keys must be tensors. | Y |
**Example**
``` {.python}
# CASE 1: A single validation dataset
def validation_step(self, batch, batch_nb):
x, y = batch
def validation_step(self, data_batch, batch_nb):
x, y, z = data_batch
# implement your own
out = self.forward(x)
loss = self.loss(out, y)
# log 6 example images
# or generated text... or whatever
sample_imgs = x[:6]
grid = torchvision.utils.make_grid(sample_imgs)
self.experiment.add_image('example_images', grid, 0)
loss = self.loss(out, x)
# calculate acc
labels_hat = torch.argmax(out, dim=1)
@@ -296,35 +174,22 @@ def validation_step(self, batch, batch_nb):
# return an optional dict
return output
```
If you pass in multiple validation datasets, validation_step will have an additional argument.
```python
# CASE 2: multiple validation datasets
def validation_step(self, batch, batch_nb, dataset_idx):
# dataset_idx tells you which dataset this is.
```
The ```dataset_idx``` corresponds to the order of datasets returned in ```val_dataloader```.
```
---
### validation_end
``` {.python}
def validation_end(self, outputs)
```
If you didn't define a validation_step, this won't be called.
```
Called at the end of the validation loop with the outputs of validation_step.
The outputs here are strictly for the progress bar. If you don't need to display anything, don't return anything.
Called at the end of the validation loop with the output of each validation_step.
**Params**
| Param | description |
|---|---|
| outputs | List of outputs you defined in validation_step, or if there are multiple dataloaders, a list containing a list of outputs for each dataloader |
| outputs | List of outputs you defined in validation_step |
**Return**
@@ -334,8 +199,6 @@ The outputs here are strictly for the progress bar. If you don't need to display
**Example**
With a single dataloader
``` {.python}
def validation_end(self, outputs):
"""
@@ -351,173 +214,38 @@ def validation_end(self, outputs):
val_loss_mean /= len(outputs)
val_acc_mean /= len(outputs)
tqdm_dict = {'val_loss': val_loss_mean.item(), 'val_acc': val_acc_mean.item()}
return tqdm_dict
tqdm_dic = {'val_loss': val_loss_mean.item(), 'val_acc': val_acc_mean.item()}
return tqdm_dic
```
With multiple dataloaders, `outputs` will be a list of lists. The outer list contains
one entry per dataloader, while the inner list contains the individual outputs of
each validation step for that dataloader.
``` {.python}
def validation_end(self, outputs):
"""
Called at the end of validation to aggregate outputs
:param outputs: list of list of individual outputs of each validation step
:return:
"""
val_loss_mean = 0
val_acc_mean = 0
i = 0
for dataloader_outputs in outputs:
for output in dataloader_outputs:
val_loss_mean += output['val_loss']
val_acc_mean += output['val_acc']
i += 1
val_loss_mean /= i
val_acc_mean /= i
tqdm_dict = {'val_loss': val_loss_mean.item(), 'val_acc': val_acc_mean.item()}
return tqdm_dict
```
### test_step
``` {.python}
# if you have one test dataloader:
def test_step(self, batch, batch_nb)
# if you have multiple test dataloaders:
def test_step(self, batch, batch_nb, dataloader_idxdx)
```
**OPTIONAL**
If you don't need to test you don't need to implement this method. In this step you'd normally generate examples or calculate anything of interest such as accuracy.
When the validation_step is called, the model has been put in eval mode and PyTorch gradients have been disabled. At the end of validation, model goes back to training mode and gradients are enabled.
The dict you return here will be available in the `test_end` method.
This function is used when you execute `trainer.test()`.
**Params**
| Param | description |
|---|---|
| batch | The output of your dataloader. A tensor, tuple or list |
| batch_nb | Integer displaying which batch this is |
| dataloader_idx | Integer displaying which dataloader this is (only if multiple test datasets used) |
**Return**
| Return | description | optional |
|---|---|---|
| dict | Dict or OrderedDict with metrics to display in progress bar. All keys must be tensors. | Y |
**Example**
``` {.python}
# CASE 1: A single test dataset
def test_step(self, batch, batch_nb):
x, y = batch
# implement your own
out = self.forward(x)
loss = self.loss(out, y)
# calculate acc
labels_hat = torch.argmax(out, dim=1)
test_acc = torch.sum(y == labels_hat).item() / (len(y) * 1.0)
# all optional...
# return whatever you need for the collation function test_end
output = OrderedDict({
'test_loss': loss_test,
'test_acc': torch.tensor(test_acc), # everything must be a tensor
})
# return an optional dict
return output
```
If you pass in multiple test datasets, test_step will have an additional argument.
```python
# CASE 2: multiple test datasets
def test_step(self, batch, batch_nb, dataset_idx):
# dataset_idx tells you which dataset this is.
```
The ```dataset_idx``` corresponds to the order of datasets returned in ```test_dataloader```.
---
### test_end
### configure_optimizers
``` {.python}
def test_end(self, outputs)
```
If you didn't define a test_step, this won't be called.
def configure_optimizers(self)
```
Called at the end of the test step with the output of each test_step.
Set up as many optimizers and (optionally) learning rate schedulers as you need. Normally you'd need one. But in the case of GANs or something more esoteric you might have multiple.
Lightning will call .backward() and .step() on each one in every epoch. If you use 16 bit precision it will also handle that.
The outputs here are strictly for the progress bar. If you don't need to display anything, don't return anything.
**Params**
| Param | description |
|---|---|
| outputs | List of outputs you defined in test_step, or if there are multiple dataloaders, a list containing a list of outputs for each dataloader |
**Return**
| Return | description | optional |
|---|---|---|
| dict | Dict of OrderedDict with metrics to display in progress bar | Y |
##### Return
List or Tuple - List of optimizers with an optional second list of learning-rate schedulers
**Example**
``` {.python}
def test_end(self, outputs):
"""
Called at the end of test to aggregate outputs
:param outputs: list of individual outputs of each test step
:return:
"""
test_loss_mean = 0
test_acc_mean = 0
for output in outputs:
test_loss_mean += output['test_loss']
test_acc_mean += output['test_acc']
test_loss_mean /= len(outputs)
test_acc_mean /= len(outputs)
tqdm_dict = {'test_loss': test_loss_mean.item(), 'test_acc': test_acc_mean.item()}
return tqdm_dict
```
With multiple dataloaders, `outputs` will be a list of lists. The outer list contains
one entry per dataloader, while the inner list contains the individual outputs of
each validation step for that dataloader.
``` {.python}
def test_end(self, outputs):
"""
Called at the end of test to aggregate outputs
:param outputs: list of individual outputs of each test step
:return:
"""
test_loss_mean = 0
test_acc_mean = 0
i = 0
for dataloader_outputs in outputs:
for output in dataloader_outputs:
test_loss_mean += output['test_loss']
test_acc_mean += output['test_acc']
i += 1
test_loss_mean /= i
test_acc_mean /= i
tqdm_dict = {'test_loss': test_loss_mean.item(), 'test_acc': test_acc_mean.item()}
return tqdm_dict
# most cases
def configure_optimizers(self):
opt = Adam(self.parameters(), lr=0.01)
return [opt]
# gan example, with scheduler for discriminator
def configure_optimizers(self):
generator_opt = Adam(self.model_gen.parameters(), lr=0.01)
disriminator_opt = Adam(self.model_disc.parameters(), lr=0.02)
discriminator_sched = CosineAnnealing(discriminator_opt, T_max=10)
return [generator_opt, disriminator_opt], [discriminator_sched]
```
---
@@ -563,24 +291,48 @@ def on_load_checkpoint(self, checkpoint):
```
---
### val_dataloader
### tng_dataloader
``` {.python}
@pl.data_loader
def val_dataloader(self)
@ptl.data_loader
def tng_dataloader(self)
```
**OPTIONAL**
If you don't need a validation dataset and a validation_step, you don't need to implement this method.
Called by lightning during validation loop. Make sure to use the @pl.data_loader decorator, this ensures not calling this function until the data are needed.
Called by lightning during training loop. Make sure to use the @ptl.data_loader decorator, this ensures not calling this function until the data are needed.
##### Return
PyTorch DataLoader or list of PyTorch Dataloaders.
Pytorch DataLoader
**Example**
``` {.python}
@pl.data_loader
@ptl.data_loader
def tng_dataloader(self):
transform = transforms.Compose([transforms.ToTensor(), transforms.Normalize((0.5,), (1.0,))])
dataset = MNIST(root='/path/to/mnist/', train=True, transform=transform, download=True)
loader = torch.utils.data.DataLoader(
dataset=dataset,
batch_size=self.hparams.batch_size,
shuffle=True
)
return loader
```
---
### val_dataloader
``` {.python}
@ptl.data_loader
def tng_dataloader(self)
```
Called by lightning during validation loop. Make sure to use the @ptl.data_loader decorator, this ensures not calling this function until the data are needed.
##### Return
Pytorch DataLoader
**Example**
``` {.python}
@ptl.data_loader
def val_dataloader(self):
transform = transforms.Compose([transforms.ToTensor(), transforms.Normalize((0.5,), (1.0,))])
dataset = MNIST(root='/path/to/mnist/', train=False, transform=transform, download=True)
@@ -591,35 +343,24 @@ def val_dataloader(self):
)
return loader
# can also return multiple dataloaders
@pl.data_loader
def val_dataloader(self):
return [loader_a, loader_b, ..., loader_n]
```
In the case where you return multiple val_dataloaders, the validation_step will have an arguement ```dataset_idx```
which matches the order here.
---
### test_dataloader
``` {.python}
@pl.data_loader
@ptl.data_loader
def test_dataloader(self)
```
**OPTIONAL**
If you don't need a test dataset and a test_step, you don't need to implement this method.
Called by lightning during test loop. Make sure to use the @pl.data_loader decorator, this ensures not calling this function until the data are needed.
Called by lightning during test loop. Make sure to use the @ptl.data_loader decorator, this ensures not calling this function until the data are needed.
##### Return
PyTorch DataLoader
Pytorch DataLoader
**Example**
``` {.python}
@pl.data_loader
@ptl.data_loader
def test_dataloader(self):
transform = transforms.Compose([transforms.ToTensor(), transforms.Normalize((0.5,), (1.0,))])
dataset = MNIST(root='/path/to/mnist/', train=False, transform=transform, download=True)
@@ -633,13 +374,13 @@ def test_dataloader(self):
```
---
### update_training_log_metrics
### update_tng_log_metrics
``` {.python}
def update_training_log_metrics(self, logs)
def update_tng_log_metrics(self, logs)
```
Called by lightning right before it logs metrics for this batch.
This is a chance to amend or add to the metrics about to be logged.
This is a chance to ammend or add to the metrics about to be logged.
##### Return
Dict
@@ -647,7 +388,7 @@ Dict
**Example**
``` {.python}
def update_training_log_metrics(self, logs):
def update_tng_log_metrics(self, logs):
# modify or add to logs
return logs
```
@@ -674,7 +415,7 @@ def add_model_specific_args(parent_parser, root_dir):
parser = HyperOptArgumentParser(strategy=parent_parser.strategy, parents=[parent_parser])
# param overwrites
# parser.set_defaults(gradient_clip_val=5.0)
# parser.set_defaults(gradient_clip=5.0)
# network params
parser.opt_list('--drop_prob', default=0.2, options=[0.2, 0.5], type=float, tunable=False)
+1 -1
View File
@@ -31,7 +31,7 @@ y_hat = pretrained_model(x)
| Param | description |
|---|---|
| weights_path | Path to a PyTorch checkpoint |
| weights_path | Path to a pytorch checkpoint |
| tags_csv | Path to meta_tags.csv file generated by the test-tube Experiment |
| on_gpu | if True, puts model on GPU. Make sure to use transforms option if model devices have changed |
| map_location | A dictionary mapping saved weight GPU devices to new GPU devices |
+2 -16
View File
@@ -10,7 +10,7 @@ Current dtype
---
#### experiment
An instance of test-tube Experiment which you can use to log anything for tensorboard (subclass of [PyTorch SummaryWriter](https://pytorch.org/docs/stable/tensorboard.html)).
An instance of test-tube Experiment which you can use to log anything for tensorboarX.
```{.python}
self.experiment.add_embedding(...)
self.experiment.log({'val_loss': 0.9})
@@ -22,7 +22,7 @@ self.experiment.add_scalars(...)
Total training batches seen across all epochs
---
#### gradient_clip_val
#### gradient_clip
The current gradient clip value
---
@@ -38,17 +38,3 @@ self.trainer.current_epoch
...
```
## Debugging
The LightningModule also offers these tricks to help debug.
---
#### example_input_array
In the LightningModule init, you can set a dummy tensor for this property
to get a print out of sizes coming into and out of every layer.
```python
def __init__(self):
# put the dimensions of the first input to your system
self.example_input_array = torch.rand(5, 28 * 28)
```
+3 -51
View File
@@ -5,66 +5,18 @@ Lightning can automate saving and loading checkpoints.
To enable checkpointing, define the checkpoint callback and give it to the trainer.
``` {.python}
from pytorch_lightning.callbacks import ModelCheckpoint
from pytorch_lightning.utils.pt_callbacks import ModelCheckpoint
checkpoint_callback = ModelCheckpoint(
filepath='/path/to/store/weights/',
filepath='/path/to/store/weights.ckpt',
save_best_only=True,
verbose=True,
monitor='val_loss',
mode='min',
prefix=''
mode='min'
)
trainer = Trainer(checkpoint_callback=checkpoint_callback)
```
---
### Restoring training session
You might want to not only load a model but also continue training it. Use this method to
restore the trainer state as well. This will continue from the epoch and global step you last left off.
However, the dataloaders will start from the first batch again (if you shuffled it shouldn't matter).
Lightning will restore the session if you pass an experiment with the same version and there's a saved checkpoint.
``` {.python}
from test_tube import Experiment
exp = Experiment(version=a_previous_version_with_a_saved_checkpoint)
trainer = Trainer(experiment=exp)
# this fit call loads model weights and trainer state
# the trainer continues seamlessly from where you left off
# without having to do anything else.
trainer.fit(model)
```
The trainer restores:
- global_step
- current_epoch
- All optimizers
- All lr_schedulers
- Model weights
You can even change the logic of your model as long as the weights and "architecture" of
the system isn't different. If you add a layer, for instance, it might not work.
At a rough level, here's [what happens inside Trainer](https://github.com/williamFalcon/pytorch-lightning/blob/master/pytorch_lightning/root_module/model_saving.py#L63):
```python
self.global_step = checkpoint['global_step']
self.current_epoch = checkpoint['epoch']
# restore the optimizers
optimizer_states = checkpoint['optimizer_states']
for optimizer, opt_state in zip(self.optimizers, optimizer_states):
optimizer.load_state_dict(opt_state)
# restore the lr schedulers
lr_schedulers = checkpoint['lr_schedulers']
for scheduler, lrs_state in zip(self.lr_schedulers, lr_schedulers):
scheduler.load_state_dict(lrs_state)
# uses the model you passed into trainer
model.load_state_dict(checkpoint['state_dict'])
```
+8 -45
View File
@@ -10,13 +10,10 @@ For multi-node training you must use DistributedDataParallel.
You can toggle between each mode by setting this flag.
``` {.python}
# DEFAULT (when using single GPU or no GPUs)
trainer = Trainer(distributed_backend=None)
# Change to DataParallel (gpus > 1)
# DEFAULT uses DataParallel
trainer = Trainer(distributed_backend='dp')
# change to distributed data parallel (gpus > 1)
# change to distributed data parallel
trainer = Trainer(distributed_backend='ddp')
```
@@ -26,34 +23,6 @@ have configuration issues depending on your cluster.
For a deeper understanding of what lightning is doing, feel free to read [this guide](https://medium.com/@_willfalcon/9-tips-for-training-lightning-fast-neural-networks-in-pytorch-8e63a502f565).
---
#### Distributed and 16-bit precision.
Due to an issue with apex and DistributedDataParallel (PyTorch and NVIDIA issue), Lightning does
not allow 16-bit and DP training. We tried to get this to work, but it's an issue on their end.
Below are the possible configurations we support.
| 1 GPU | 1+ GPUs | DP | DDP | 16-bit | command |
|---|---|---|---|---|---|
| Y | | | | | ```Trainer(gpus=1)``` |
| Y | | | | Y | ```Trainer(gpus=1, use_amp=True)``` |
| | Y | Y | | | ```Trainer(gpus=k, distributed_backend='dp')``` |
| | Y | | Y | | ```Trainer(gpus=k, distributed_backend='ddp')``` |
| | Y | | Y | Y | ```Trainer(gpus=k, distributed_backend='ddp', use_amp=True)``` |
You also have the option of specifying which GPUs to use by passing a list:
```python
# DEFAULT (int)
Trainer(gpus=k)
# You specify which GPUs (don't use if running on cluster)
Trainer(gpus=[0, 1])
# can also be a string
Trainer(gpus='0, 1')
```
---
#### CUDA flags
CUDA flags make certain GPUs visible to your script.
@@ -64,9 +33,6 @@ Lightning sets these for you automatically, there's NO NEED to do this yourself.
# os.environ["CUDA_VISIBLE_DEVICES"] = "0"
```
However, when using a cluster, Lightning will NOT set these flags (and you should not either).
SLURM will set these for you.
---
#### 16-bit mixed precision
16 bit precision can cut your memory footprint by half. If using volta architecture GPUs it can give a dramatic training speed-up as well.
@@ -88,7 +54,7 @@ trainer = Trainer(amp_level='O2', use_amp=False)
Make sure you're on a GPU machine.
```python
# DEFAULT
trainer = Trainer(gpus=1)
trainer = Trainer(gpus=[0])
```
---
@@ -96,11 +62,11 @@ trainer = Trainer(gpus=1)
Make sure you're on a GPU machine. You can set as many GPUs as you want.
In this setting, the model will run on all 8 GPUs at once using DataParallel under the hood.
```python
# to use DataParallel
trainer = Trainer(gpus=8, distributed_backend='dp')
# to use DataParallel (default)
trainer = Trainer(gpus=[0,1,2,3,4,5,6,7], distributed_backend='dp')
# RECOMMENDED use DistributedDataParallel
trainer = Trainer(gpus=8, distributed_backend='ddp')
trainer = Trainer(gpus=[0,1,2,3,4,5,6,7], distributed_backend='ddp')
```
---
@@ -108,7 +74,7 @@ trainer = Trainer(gpus=8, distributed_backend='ddp')
Multi-node training is easily done by specifying these flags.
```python
# train on 12*8 GPUs
trainer = Trainer(gpus=8, nb_gpu_nodes=12, distributed_backend='ddp')
trainer = Trainer(gpus=[0,1,2,3,4,5,6,7], nb_gpu_nodes=12)
```
In addition, make sure to set up your SLURM job correctly via the [SlurmClusterObject](https://williamfalcon.github.io/test-tube/hpc/SlurmCluster/). In particular, specify the number of tasks per node correctly.
@@ -128,7 +94,7 @@ cluster.add_command('export NCCL_SOCKET_IFNAME=^docker0,lo')
cluster.add_command('export NCCL_DEBUG=INFO')
# setting a master port here is a good idea.
cluster.add_command('export MASTER_PORT=%r' % PORT)
cluster.add_command(f'export MASTER_PORT={PORT}')
# good to load the latest NCCL version
cluster.load_modules(['NCCL/2.4.7-1-cuda.10.0'])
@@ -140,9 +106,6 @@ cluster.per_experiment_nb_gpus = 8
cluster.add_slurm_cmd(cmd='ntasks-per-node', value=8, comment='1 task per gpu')
```
**NOTE:** When running in DDP mode, any errors in your code will show up as an NCCL issue.
Set the ```NCCL_DEBUG=INFO``` flag to see the ACTUAL error.
Finally, make sure to add a distributed sampler to your dataset. The distributed sampler copies a
portion of your dataset onto each GPU. (World_size = gpus_per_node * nb_nodes).
+5 -22
View File
@@ -5,7 +5,7 @@ Lighting offers a few options for logging information about model, gpu usage, et
#### Display metrics in progress bar
``` {.python}
# DEFAULT
trainer = Trainer(show_progress_bar=True)
trainer = Trainer(progress_bar=True)
```
---
@@ -13,15 +13,7 @@ trainer = Trainer(show_progress_bar=True)
Every k batches lightning will make an entry in the metrics log
``` {.python}
# DEFAULT (ie: save a .csv log file every 10 batches)
trainer = Trainer(row_log_interval=10)
```
---
#### Log metric row every k batches
Logs GPU memory when metrics are logged.
``` {.python}
# DEFAULT
trainer = Trainer(log_gpu_memory=False)
trainer = Trainer(add_log_row_interval=10)
```
---
@@ -41,7 +33,7 @@ trainer = Trainer(process_position=1)
Whenever you call .save() on the test-tube experiment it logs all the hyperparameters in current use.
Give lightning a test-tube Experiment object to automate this for you.
``` {.python}
from test_tube import Experiment
from test-tube import Experiment
exp = Experiment(...)
Trainer(experiment=exp)
@@ -52,7 +44,7 @@ Trainer(experiment=exp)
Whenever you call .save() on the test-tube experiment it snapshows all code and pushes to a git tag.
Give lightning a test-tube Experiment object to automate this for you.
``` {.python}
from test_tube import Experiment
from test-tube import Experiment
exp = Experiment(create_git_tag=True)
Trainer(experiment=exp)
@@ -60,16 +52,7 @@ Trainer(experiment=exp)
---
### Tensorboard support
In the LightningModule you can access the experiment logger by doing:
```python
self.experiment
# add image
# Look at PyTorch SummaryWriter docs for what you can do.
self.experiment.add_image(...)
```
The experiment object is a strict subclass of PyTorch SummaryWriter. However, this class
The experiment object is a strict subclass of Pytorch SummaryWriter. However, this class
also snapshots every detail about the experiment (data folder paths, code, hyperparams),
and allows you to visualize it using tensorboard.
``` {.python}
+20 -28
View File
@@ -1,10 +1,8 @@
Lightning supports model training on a cluster managed by SLURM in the following cases:
1. Training on a single cpu or single GPU.
2. Train on multiple GPUs on the same node using DataParallel or DistributedDataParallel
3. Training across multiple GPUs on multiple different nodes via DistributedDataParallel.
**Note: A node means a machine with multiple GPUs**
1. Training on single or multi-cpus only.
2. Training on single or multi-gpus on the same node.
3. Coming SOON: Training across multiple nodes.
---
#### Running grid search on a cluster
@@ -25,9 +23,6 @@ parser.opt_list('--nb_layers', default=2, type=int, tunable=True, options=[2, 4,
hparams = parser.parse_args()
```
**NOTE** You must set ```Tunable=True``` for that argument to be considered in the permutation set. Otherwise
test-tube will use the default value. This flag is useful when you don't want to search over an argument and
want to use the default instead.
(2). Define the cluster options in the [SlurmCluster object](https://williamfalcon.github.io/test-tube/hpc/SlurmCluster/) (over 5 nodes and 8 gpus)
@@ -60,8 +55,8 @@ cluster.memory_mb_per_node = 10000
cluster.job_time = '10:00'
```
(3). Make a main function with your model and trainer. Each job will call this function with a particular
hparams configuration.
(3). Give trainer the cluster_manager in your main function:
```{.python}
from pytorch_lightning import Trainer
@@ -71,12 +66,12 @@ def train_fx(trial_hparams, cluster_manager, _):
my_model = MyLightningModel()
# give the trainer the cluster object
trainer = Trainer()
trainer = Trainer(cluster=cluster_manager)
trainer.fit(my_model)
```
(3). Start the grid/random search
(4). Start the grid search
```{.python}
# run the models on the cluster
cluster.optimize_parallel_cluster_gpu(
@@ -86,27 +81,24 @@ cluster.optimize_parallel_cluster_gpu(
job_display_name='my_exp')
```
**NOTE** nb_trials specifies how many of the possible permutations to use. If using ```grid_search``` it will use
the depth first ordering. If using ```random_search``` it will use the first k shuffled options. FYI, random search
has been shown to be just as good as any Bayesian optimization method when using a reasonable number of samples (60),
[see this paper for more information](http://www.jmlr.org/papers/volume13/bergstra12a/bergstra12a.pdf).
That's it! The SlurmCluster object will automatically checkpoint the lightning model and resubmit if it runs into the walltime!
---
#### Walltime auto-resubmit
Lightning automatically resubmits jobs when they reach the walltime. Make sure to set the SIGUSR1 signal in
your SLURM script.
Lightning automatically resubmits jobs when they reach the walltime. You get this behavior for free if you give lightning
a slurm cluster object.
```bash
# 90 seconds before training ends
#SBATCH --signal=SIGUSR1@90
```{.python}
def my_main_fx(hparams, slurm_manager, _):
trainer = Trainer(cluster=slurm_manager)
```
When lightning receives the SIGUSR1 signal it will:
1. save a checkpoint with 'hpc_ckpt' in the name.
2. resubmit the job using the SLURM_JOB_ID
When the script starts again, Lightning will:
1. search for a 'hpc_ckpt' checkpoint.
2. restore the model, optimizers, schedulers, epoch, etc...
(See the grid search example above for cluster configuration).
With this feature lightning will:
1. automatically checkpoint the model
2. checkpoint the trainer session
3. resubmit a continuation job.
4. load the checkpoint and trainer session in the new model
-31
View File
@@ -1,31 +0,0 @@
To ensure you don't accidentally use test data to guide training decisions Lightning makes running the test set deliberate.
---
#### test
You have two options to run the test set.
First case is where you test right after a full training routine.
``` {.python}
# run full training
trainer.fit(model)
# run test set
trainer.test()
```
Second case is where you load a model and run the test set
```{.python}
model = MyLightningModule.load_from_metrics(
weights_path='/path/to/pytorch_checkpoint.ckpt',
tags_csv='/path/to/test_tube/experiment/version/meta_tags.csv',
on_gpu=True,
map_location=None
)
# init trainer with whatever options
trainer = Trainer(...)
# test (pass in the model)
trainer.test(model)
```
In this second case, the options you pass to trainer will be used when running the test set (ie: 16-bit, dp, ddp, etc...)
+6 -30
View File
@@ -19,24 +19,6 @@ It can be useful to force training for a minimum number of epochs or limit to a
trainer = Trainer(min_nb_epochs=1, max_nb_epochs=1000)
```
---
#### Early stopping
To enable ealry-stopping, define the callback and give it to the trainer.
``` {.python}
from pytorch_lightning.callbacks import EarlyStopping
# DEFAULTS
early_stop_callback = EarlyStopping(
monitor='val_loss',
min_delta=0.00,
patience=0,
verbose=False,
mode='auto'
)
trainer = Trainer(early_stop_callback=early_stop_callback)
```
---
#### Force disable early stop
Use this to turn off early stopping and run training to the [max_epoch](#force-training-for-min-or-max-epochs)
@@ -46,18 +28,15 @@ trainer = Trainer(enable_early_stop=True)
```
---
#### Gradient Clipping
Gradient clipping may be enabled to avoid exploding gradients.
Specifically, this will [clip the gradient norm computed over all model parameters *together*](https://pytorch.org/docs/stable/nn.html#torch.nn.utils.clip_grad_norm_).
#### Gradient Clipping
Use this to turn off early stopping and run training to the [max_epoch](#force-training-for-min-or-max-epochs)
``` {.python}
# DEFAULT (ie: don't clip)
trainer = Trainer(gradient_clip_val=0)
# clip gradients with norm above 0.5
trainer = Trainer(gradient_clip_val=0.5)
trainer = Trainer(gradient_clip=0)
```
---
#### Inspect gradient norms
Looking at grad norms can help you figure out where training might be going wrong.
@@ -72,10 +51,7 @@ trainer = Trainer(track_grad_norm=2)
---
#### Set how much of the training set to check
If you don't want to check 100% of the training set (for debugging or if it's huge), set this flag.
train_percent_check will be overwritten by overfit_pct if `overfit_pct > 0`
If you don't want to check 100% of the training set (for debugging or if it's huge), set this flag
``` {.python}
# DEFAULT
trainer = Trainer(train_percent_check=1.0)
+3 -9
View File
@@ -5,6 +5,8 @@ Below are all the things lightning automates for you in the validation loop.
Lightning will run 5 steps of validation in the beginning of training as a sanity check so you don't have to wait until a full epoch to catch possible validation issues.
---
#### Check validation every n epochs
If you have a small dataset you might want to check validation every n epochs
@@ -16,9 +18,6 @@ trainer = Trainer(check_val_every_n_epoch=1)
---
#### Set how much of the validation set to check
If you don't want to check 100% of the validation set (for debugging or if it's huge), set this flag
val_percent_check will be overwritten by overfit_pct if `overfit_pct > 0`
``` {.python}
# DEFAULT
trainer = Trainer(val_percent_check=1.0)
@@ -30,9 +29,6 @@ trainer = Trainer(val_percent_check=0.1)
---
#### Set how much of the test set to check
If you don't want to check 100% of the test set (for debugging or if it's huge), set this flag
test_percent_check will be overwritten by overfit_pct if `overfit_pct > 0`
``` {.python}
# DEFAULT
trainer = Trainer(test_percent_check=1.0)
@@ -58,6 +54,4 @@ Lightning runs a few steps of validation in the beginning of training. This avoi
``` {.python}
# DEFAULT
trainer = Trainer(nb_sanity_val_steps=5)
```
You can use `Trainer(nb_sanity_val_steps=0)` to skip the sanity check.
```
-3
View File
@@ -23,9 +23,6 @@ trainer = Trainer(track_grad_norm=2)
---
#### Make model overfit on subset of data
A useful debugging trick is to make your model overfit a tiny fraction of the data.
setting `overfit_pct > 0` will overwrite train_percent_check, val_percent_check, test_percent_check
``` {.python}
# DEFAULT don't overfit (ie: normal training)
trainer = Trainer(overfit_pct=0.0)
+4 -59
View File
@@ -5,7 +5,7 @@ There are cases when you might want to do something different at different parts
To enable a hook, simply override the method in your LightningModule and the trainer will call it at the correct time.
**Contributing** If there's a hook you'd like to add, simply:
1. Fork PyTorchLightning.
1. Fork PytorchLightning.
2. Add the hook [here](https://github.com/williamFalcon/pytorch-lightning/blob/master/pytorch_lightning/root_module/hooks.py).
3. Add the correct place in the [Trainer](https://github.com/williamFalcon/pytorch-lightning/blob/master/pytorch_lightning/models/trainer.py) where it should be called.
@@ -18,7 +18,7 @@ def on_epoch_start(self):
```
---
#### on_epoch_end
#### on_batch_end
Called in the training loop at the very end of the epoch.
```python
def on_epoch_end(self):
@@ -33,14 +33,6 @@ def on_batch_start(self):
# do something when the batch starts
```
---
#### on_batch_end
Called in the training loop after the batch.
```python
def on_batch_end(self):
# do something when the batch ends
```
---
#### on_pre_performance_check
Called at the very beginning of the validation loop.
@@ -58,62 +50,15 @@ def on_post_performance_check(self):
```
---
#### on_training_metrics
#### on_tng_metrics
Called in the training loop, right before metrics are logged.
Although you can log at any time by using self.experiment, you can use
this callback to modify what will be logged.
```python
def on_training_metrics(self, metrics):
def on_tng_metrics(self, metrics):
# do something before validation end
```
---
#### optimizer_step
Calls .step() and .zero_grad for each optimizer.
You can override this method to adjust how you do the optimizer step for each optimizer
Called once per optimizer
```python
# DEFAULT
def optimizer_step(self, current_epoch, batch_nb, optimizer, optimizer_i):
optimizer.step()
optimizer.zero_grad()
# Alternating schedule for optimizer steps (ie: GANs)
def optimizer_step(self, current_epoch, batch_nb, optimizer, optimizer_i):
# update generator opt every 2 steps
if optimizer_i == 0:
if batch_nb % 2 == 0 :
optimizer.step()
optimizer.zero_grad()
# update discriminator opt every 4 steps
if optimizer_i == 1:
if batch_nb % 4 == 0 :
optimizer.step()
optimizer.zero_grad()
# ...
# add as many optimizers as you want
```
This step allows you to do a lot of non-standard training tricks such as learning-rate warm-up:
```python
# learning rate warm-up
def optimizer_step(self, current_epoch, batch_nb, optimizer, optimizer_i):
# warm up lr
if self.trainer.global_step < 500:
lr_scale = min(1., float(self.trainer.global_step + 1) / 500.)
for pg in optimizer.param_groups:
pg['lr'] = lr_scale * self.hparams.learning_rate
# update params
optimizer.step()
optimizer.zero_grad()
```
---
#### on_before_zero_grad
Called in the training loop after taking an optimizer step and before zeroing grads.
+29 -37
View File
@@ -19,44 +19,42 @@ But of course the fun is in all the advanced things it can do:
**Checkpointing**
- [Model saving](https://williamfalcon.github.io/pytorch-lightning/Trainer/Checkpointing/#model-saving)
- [Model loading](https://williamfalcon.github.io/pytorch-lightning/LightningModule/methods/#load-from-metrics)
- [Restoring training session](https://williamfalcon.github.io/pytorch-lightning/Trainer/Checkpointing/#restoring-training-session)
- Model saving
- Model loading
**Computing cluster (SLURM)**
- [Running grid search on a cluster](https://williamfalcon.github.io/pytorch-lightning/Trainer/SLURM%20Managed%20Cluster#running-grid-search-on-a-cluster)
- [Walltime auto-resubmit](https://williamfalcon.github.io/pytorch-lightning/Trainer/SLURM%20Managed%20Cluster#walltime-auto-resubmit)
- [Running grid search on a cluster](SLURM%20Managed%20Cluster/#running-grid-search-on-a-cluster)
- [Walltime auto-resubmit](SLURM%20Managed%20Cluster/#walltime-auto-resubmit)
**Debugging**
- [Fast dev run](https://williamfalcon.github.io/pytorch-lightning/Trainer/debugging/#fast-dev-run)
- [Inspect gradient norms](https://williamfalcon.github.io/pytorch-lightning/Trainer/debugging/#inspect-gradient-norms)
- [Log GPU usage](https://williamfalcon.github.io/pytorch-lightning/Trainer/debugging/#Log-gpu-usage)
- [Make model overfit on subset of data](https://williamfalcon.github.io/pytorch-lightning/Trainer/debugging/#make-model-overfit-on-subset-of-data)
- [Print the parameter count by layer](https://williamfalcon.github.io/pytorch-lightning/Trainer/debugging/#print-the-parameter-count-by-layer)
- [Pring which gradients are nan](https://williamfalcon.github.io/pytorch-lightning/Trainer/debugging/#print-which-gradients-are-nan)
- [Print input and output size of every module in system](https://williamfalcon.github.io/pytorch-lightning/LightningModule/properties/#example_input_array)
- [Fast dev run](Debugging/#fast-dev-run)
- [Inspect gradient norms](Debugging/#inspect-gradient-norms)
- [Log GPU usage](Debugging/#Log-gpu-usage)
- [Make model overfit on subset of data](Debugging/#make-model-overfit-on-subset-of-data)
- [Print the parameter count by layer](Debugging/#print-the-parameter-count-by-layer)
- [Pring which gradients are nan](Debugging/#print-which-gradients-are-nan)
**Distributed training**
- [16-bit mixed precision](https://williamfalcon.github.io/pytorch-lightning/Trainer/Distributed%20training/#16-bit-mixed-precision)
- [Multi-GPU](https://williamfalcon.github.io/pytorch-lightning/Trainer/Distributed%20training/#Multi-GPU)
- [Multi-node](https://williamfalcon.github.io/pytorch-lightning/Trainer/Distributed%20training/#Multi-node)
- [Single GPU](https://williamfalcon.github.io/pytorch-lightning/Trainer/Distributed%20training/#single-gpu)
- [Self-balancing architecture](https://williamfalcon.github.io/pytorch-lightning/Trainer/Distributed%20training/#self-balancing-architecture)
- [16-bit mixed precision](Distributed%20training/#16-bit-mixed-precision)
- [Multi-GPU](Distributed%20training/#Multi-GPU)
- [Multi-node](Distributed%20training/#Multi-node)
- [Single GPU](Distributed%20training/#single-gpu)
- [Self-balancing architecture](Distributed%20training/#self-balancing-architecture)
**Experiment Logging**
- [Display metrics in progress bar](https://williamfalcon.github.io/pytorch-lightning/Trainer/Logging/#display-metrics-in-progress-bar)
- [Log metric row every k batches](https://williamfalcon.github.io/pytorch-lightning/Trainer/Logging/#log-metric-row-every-k-batches)
- [Process position](https://williamfalcon.github.io/pytorch-lightning/Trainer/Logging/#process-position)
- [Display metrics in progress bar](Logging/#display-metrics-in-progress-bar)
- [Log metric row every k batches](Logging/#log-metric-row-every-k-batches)
- [Process position](Logging/#process-position)
- [Tensorboard support](https://williamfalcon.github.io/pytorch-lightning/Trainer/Logging/#tensorboard-support)
- [Save a snapshot of all hyperparameters](https://williamfalcon.github.io/pytorch-lightning/Trainer/Logging/#save-a-snapshot-of-all-hyperparameters)
- [Snapshot code for a training run](https://williamfalcon.github.io/pytorch-lightning/Trainer/Logging/#snapshot-code-for-a-training-run)
- [Write logs file to csv every k batches](https://williamfalcon.github.io/pytorch-lightning/Trainer/Logging/#write-logs-file-to-csv-every-k-batches)
- [Save a snapshot of all hyperparameters](Logging/#save-a-snapshot-of-all-hyperparameters)
- [Snapshot code for a training run](Logging/#snapshot-code-for-a-training-run)
- [Write logs file to csv every k batches](Logging/#write-logs-file-to-csv-every-k-batches)
**Training loop**
@@ -64,22 +62,16 @@ But of course the fun is in all the advanced things it can do:
- [Force training for min or max epochs](https://williamfalcon.github.io/pytorch-lightning/Trainer/Training%20Loop/#force-training-for-min-or-max-epochs)
- [Force disable early stop](https://williamfalcon.github.io/pytorch-lightning/Trainer/Training%20Loop/#force-disable-early-stop)
- [Gradient Clipping](https://williamfalcon.github.io/pytorch-lightning/Trainer/Training%20Loop/#gradient-clipping)
- [Hooks](https://williamfalcon.github.io/pytorch-lightning/Trainer/hooks/)
- [Hooks](hooks)
- [Learning rate scheduling](https://williamfalcon.github.io/pytorch-lightning/LightningModule/RequiredTrainerInterface/#configure_optimizers)
- [Use multiple optimizers (like GANs)](https://williamfalcon.github.io/pytorch-lightning/LightningModule/RequiredTrainerInterface/#configure_optimizers)
- [Use multiple optimizers (like GANs)](https://williamfalcon.github.io/pytorch-lightning/Pytorch-Lightning/LightningModule/#configure_optimizers)
- [Set how much of the training set to check (1-100%)](https://williamfalcon.github.io/pytorch-lightning/Trainer/Training%20Loop/#set-how-much-of-the-training-set-to-check)
- [Step optimizers at arbitrary intervals](https://williamfalcon.github.io/pytorch-lightning/Trainer/hooks/#optimizer_step)
**Validation loop**
- [Check validation every n epochs](https://williamfalcon.github.io/pytorch-lightning/Trainer/Validation%20loop/#check-validation-every-n-epochs)
- [Hooks](https://williamfalcon.github.io/pytorch-lightning/Trainer/hooks/)
- [Set how much of the validation set to check](https://williamfalcon.github.io/pytorch-lightning/Trainer/Validation%20loop/#set-how-much-of-the-validation-set-to-check)
- [Set how much of the test set to check](https://williamfalcon.github.io/pytorch-lightning/Trainer/Validation%20loop/#set-how-much-of-the-test-set-to-check)
- [Set validation check frequency within 1 training epoch](https://williamfalcon.github.io/pytorch-lightning/Trainer/Validation%20loop/#set-validation-check-frequency-within-1-training-epoch)
- [Set the number of validation sanity steps](https://williamfalcon.github.io/pytorch-lightning/Trainer/Validation%20loop/#set-the-number-of-validation-sanity-steps)
**Testing loop**
- [Run test set](https://williamfalcon.github.io/pytorch-lightning/Trainer/Testing%20loop/)
- [Check validation every n epochs](Validation%20Loop/#check-validation-every-n-epochs)
- [Hooks](hooks)
- [Set how much of the validation set to check](Validation%20Loop/#set-how-much-of-the-validation-set-to-check)
- [Set how much of the test set to check](Validation%20Loop/#set-how-much-of-the-test-set-to-check)
- [Set validation check frequency within 1 training epoch](Validation%20Loop/#set-validation-check-frequency-within-1-training-epoch)
- [Set the number of validation sanity steps](Validation%20Loop/#set-the-number-of-validation-sanity-steps)
@@ -1,2 +1 @@
mkdocs-material==4.4.0
mkdocs==1.0.4
+2 -2
View File
@@ -3,7 +3,7 @@ In 99% of cases you want to just copy [this template](https://github.com/william
```bash
# get a copy of the module template
wget https://raw.githubusercontent.com/williamFalcon/pytorch-lightning/master/examples/new_project_templates/lightning_module_template.py
wget https://github.com/williamFalcon/pytorch-lightning/blob/master/examples/new_project_templates/lightning_module_template.py
```
---
@@ -40,7 +40,7 @@ The main function should have 3 arguments:
- slurm_manager: Slurm cluster manager object (can be None)
- dict: for you to return any values you want (useful in meta-learning, otherwise set to _)
```python
```{}
def main(hparams, cluster, results_dict):
"""
Main training routine specific for this project
+9 -66
View File
@@ -1,68 +1,17 @@
###### New project Quick Start
To start a new project define two files, a LightningModule and a Trainer file.
To illustrate Lightning power and simplicity, here's an example of a typical research flow.
To start a new project you define two files, a LightningModule and a Trainer file.
###### Case 1: BERT
Let's say you're working on something like BERT but want to try different ways of training or even different networks.
You would define a single LightningModule and use flags to switch between your different ideas.
```python
class BERT(pl.LightningModule):
def __init__(self, model_name, task):
self.task = task
if model_name == 'transformer':
self.net = Transformer()
elif model_name == 'my_cool_version':
self.net = MyCoolVersion()
def training_step(self, batch, batch_nb):
if self.task == 'standard_bert':
# do standard bert training with self.net...
# return loss
if self.task == 'my_cool_task':
# do my own version with self.net
# return loss
```
A separate trainer file allows to run many LightningModules. Each LightningModule has the core
logic to a particular research project.
###### Case 2: COOLER NOT BERT
But if you wanted to try something **completely** different, you'd define a new module for that.
```python
For example, one lightningModule could be an image classifier, the other
one could be a seq-2-seq model, both (optionally) ran by the same trainer file.
class CoolerNotBERT(pl.LightningModule):
def __init__(self):
self.net = ...
def training_step(self, batch, batch_nb):
# do some other cool task
# return loss
```
###### Rapid research flow
Then you could do rapid research by switching between these two and using the same trainer.
```python
if use_bert:
model = BERT()
else:
model = CoolerNotBERT()
trainer = Trainer(gpus=[0, 1, 2, 3], use_amp=True)
trainer.fit(model)
```
Notice a few things about this flow:
1. You're writing pure PyTorch... no unnecessary abstractions or new libraries to learn.
2. You get free GPU and 16-bit support without writing any of that code in your model.
3. You also get all of the capabilities below (without coding or testing yourself).
---
###### Templates
1. [MNIST LightningModule](https://williamfalcon.github.io/pytorch-lightning/LightningModule/RequiredTrainerInterface/#minimal-example)
2. [Trainer](https://williamfalcon.github.io/pytorch-lightning/Trainer/)
- [Basic CPU Trainer Template](https://github.com/williamFalcon/pytorch-lightning/blob/master/examples/new_project_templates/single_cpu_template.py)
- [Multi-GPU Trainer Template](https://github.com/williamFalcon/pytorch-lightning/blob/master/examples/new_project_templates/single_gpu_node_template.py)
- [GPU cluster Trainer Template](https://github.com/williamFalcon/pytorch-lightning/blob/master/examples/new_project_templates/multi_node_cluster_template.py)
- [Basic CPU Trainer Template](https://github.com/williamFalcon/pytorch-lightning/blob/master/pytorch_lightning/examples/new_project_templates/single_cpu_template.py)
- [Multi-GPU Trainer Template](https://github.com/williamFalcon/pytorch-lightning/blob/master/pytorch_lightning/examples/new_project_templates/single_gpu_node_template.py)
- [GPU cluster Trainer Template](https://github.com/williamFalcon/pytorch-lightning/blob/master/pytorch_lightning/examples/new_project_templates/multi_node_cluster_template.py)
###### Docs shortcuts
- [LightningModule](LightningModule/RequiredTrainerInterface/)
@@ -79,7 +28,6 @@ Notice a few things about this flow:
- [Model saving](https://williamfalcon.github.io/pytorch-lightning/Trainer/Checkpointing/#model-saving)
- [Model loading](https://williamfalcon.github.io/pytorch-lightning/LightningModule/methods/#load-from-metrics)
- [Restoring training session](https://williamfalcon.github.io/pytorch-lightning/Trainer/Checkpointing/#restoring-training-session)
###### Computing cluster (SLURM)
@@ -94,7 +42,6 @@ Notice a few things about this flow:
- [Make model overfit on subset of data](https://williamfalcon.github.io/pytorch-lightning/Trainer/debugging/#make-model-overfit-on-subset-of-data)
- [Print the parameter count by layer](https://williamfalcon.github.io/pytorch-lightning/Trainer/debugging/#print-the-parameter-count-by-layer)
- [Pring which gradients are nan](https://williamfalcon.github.io/pytorch-lightning/Trainer/debugging/#print-which-gradients-are-nan)
- [Print input and output size of every module in system](https://williamfalcon.github.io/pytorch-lightning/LightningModule/properties/#example_input_array)
###### Distributed training
@@ -120,14 +67,12 @@ Notice a few things about this flow:
- [Accumulate gradients](https://williamfalcon.github.io/pytorch-lightning/Trainer/Training%20Loop/#accumulated-gradients)
- [Force training for min or max epochs](https://williamfalcon.github.io/pytorch-lightning/Trainer/Training%20Loop/#force-training-for-min-or-max-epochs)
- [Early stopping](https://williamfalcon.github.io/pytorch-lightning/Trainer/Training%20Loop/#early-stopping)
- [Force disable early stop](https://williamfalcon.github.io/pytorch-lightning/Trainer/Training%20Loop/#force-disable-early-stop)
- [Gradient Clipping](https://williamfalcon.github.io/pytorch-lightning/Trainer/Training%20Loop/#gradient-clipping)
- [Hooks](https://williamfalcon.github.io/pytorch-lightning/Trainer/hooks/)
- [Learning rate scheduling](https://williamfalcon.github.io/pytorch-lightning/LightningModule/RequiredTrainerInterface/#configure_optimizers)
- [Use multiple optimizers (like GANs)](https://williamfalcon.github.io/pytorch-lightning/LightningModule/RequiredTrainerInterface/#configure_optimizers)
- [Use multiple optimizers (like GANs)](https://williamfalcon.github.io/pytorch-lightning/Pytorch-Lightning/LightningModule/#configure_optimizers)
- [Set how much of the training set to check (1-100%)](https://williamfalcon.github.io/pytorch-lightning/Trainer/Training%20Loop/#set-how-much-of-the-training-set-to-check)
- [Step optimizers at arbitrary intervals](https://williamfalcon.github.io/pytorch-lightning/Trainer/hooks/#optimizer_step)
###### Validation loop
@@ -138,5 +83,3 @@ Notice a few things about this flow:
- [Set validation check frequency within 1 training epoch](https://williamfalcon.github.io/pytorch-lightning/Trainer/Validation%20loop/#set-validation-check-frequency-within-1-training-epoch)
- [Set the number of validation sanity steps](https://williamfalcon.github.io/pytorch-lightning/Trainer/Validation%20loop/#set-the-number-of-validation-sanity-steps)
###### Testing loop
- [Run test set](https://williamfalcon.github.io/pytorch-lightning/Trainer/Testing%20loop/)
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@@ -1,107 +0,0 @@
# Multi-node examples
Use these templates for multi-node training.
The main complexity around cluster training is how you submit the SLURM jobs.
## Test-tube
Lightning uses test-tube to submit SLURM jobs and to run hyperparameter searches on a cluster.
To run a hyperparameter search, we normally add the values to search to the Hyperparameter optimizer
```python
from test_tube import HyperOptArgumentParser
parser = HyperOptArgumentParser(strategy='grid_search')
parser.opt_list('--drop_prob', default=0.2, options=[0.2, 0.5], type=float, tunable=True)
parser.opt_list('--learning_rate', default=0.001, type=float,
options=[0.0001, 0.0005, 0.001],
tunable=True)
# give your model a chance to add its own parameters
parser = LightningTemplateModel.add_model_specific_args(parent_parser, root_dir)
# parse args
hyperparams = parser.parse_args()
```
The above sets up a grid search on learning rate and drop probability. You can now add this object to the
cluster object to perform the grid search:
```python
cluster = SlurmCluster(
hyperparam_optimizer=hyperparams,
log_path='/path/to/log/slurm/files',
)
# ... configure cluster options
# run grid search on cluster
nb_trials = 6 # (2 drop probs * 3 lrs)
cluster.optimize_parallel_cluster_gpu(
YourMainFunction,
nb_trials=nb_trials,
job_name=hyperparams.experiment_name
)
```
Running the above will launch 6 jobs, each with a different drop prob and learning rate combination.
The ```tunable``` parameter must be set to True to add that argument to the space of options, otherwise
Test-Tube will use the ```default=value```.
## SLURM Flags
However you decide to submit your jobs, debugging requires a few flags. Without these flags, you'll
see a nccl error instead of the actual error which caused the bug.
```sh
export NCCL_DEBUG=INFO
export PYTHONFAULTHANDLER=1
```
On some clusters you might need to set the network interface with this flag.
```sh
export NCCL_SOCKET_IFNAME=^docker0,lo
```
You might also need to load the latest version of NCCL
```sh
module load NCCL/2.4.7-1-cuda.10.0
```
Finally, you must set the master port (usually a random number between 12k and 20k).
```sh
# random port between 12k and 20k
export MASTER_PORT=$((12000 + RANDOM % 20000))$
```
## Simplest example.
1. Modify this script with your CoolModel file.
2. Update and submit [this bash script](https://github.com/williamFalcon/pytorch-lightning/blob/master/examples/new_project_templates/multi_node_examples/minimal_multi_node_demo_script.sh)
```bash
squeue minimal_multi_node_demo_script.sh
```
## Grid search on a cluster
#### Option 1: Run on cluster using your own SLURM script
The trainer and model will work on a cluster if you configure your SLURM script correctly.
1. Update [this demo slurm script](https://github.com/williamFalcon/pytorch-lightning/blob/master/examples/new_project_templates/multi_node_examples/demo_script.sh).
2. Submit the script
```bash
$ squeue demo_script.sh
```
Most people have some way they automatically generate their own scripts.
To run a grid search this way, you'd need a way to automatically generate scripts using all the combinations of
hyperparameters to search over.
#### Option 2: Use test-tube for SLURM script
With test tube we can automatically generate slurm scripts for different hyperparameter options.
To run this demo:
```bash
source activate YourCondaEnv
python multi_node_cluster_auto_slurm.py --email your@email.com --gpu_partition your_partition --conda_env YourCondaEnv
```
That will submit 6 jobs. Each job will have a specific combination of hyperparams. Each job will also run on 2 nodes
where each node has 8 gpus.
@@ -1,66 +0,0 @@
#!/bin/bash
#
# Auto-generated by test-tube (https://github.com/williamFalcon/test-tube)
#################
# set a job name
#SBATCH --job-name=lightning_test
#################
# a file for job output, you can check job progress
#SBATCH --output=/slurm_output_%j.out
#################
# a file for errors
#SBATCH --error=/slurm_output_%j.err
#################
# time needed for job
#SBATCH --time=01:00:00
#################
# gpus per node
#SBATCH --gres=gpu:8
#################
# cpus per job
#SBATCH --cpus-per-task=10
#################
# number of requested nodes
#SBATCH --nodes=2
#################
# memory per node (0 means all)
#SBATCH --mem=0
#################
# slurm will send a signal this far out before it kills the job
#SBATCH --signal=USR1@300
#################
# comment
#SBATCH --comment=lightning_demo
#################
# 1 task per gpu
#SBATCH --ntasks-per-node=8
#################
source activate YourEnv
# debugging flags (optional)
export NCCL_DEBUG=INFO
export PYTHONFAULTHANDLER=1
# on your cluster you might need these:
# set the network interface
export NCCL_SOCKET_IFNAME=^docker0,lo
# might need the latest cuda
module load NCCL/2.4.7-1-cuda.10.0
# random port between 12k and 20k
export MASTER_PORT=$((12000 + RANDOM % 20000))$
srun python multi_node_own_slurm_script.py
@@ -1,24 +0,0 @@
from pytorch_lightning import Trainer
from test_tube import Experiment
import os
def main():
# use the cool model from the main README.md
model = CoolModel() # noqa: F821
exp = Experiment(save_dir=os.getcwd())
# train on 4 GPUs across 4 nodes
trainer = Trainer(
experiment=exp,
distributed_backend='ddp',
max_nb_epochs=10,
gpus=4,
nb_gpu_nodes=4
)
trainer.fit(model)
if __name__ == '__main__':
main()
@@ -1,30 +0,0 @@
#!/bin/bash -l
# SLURM SUBMIT SCRIPT
#SBATCH --nodes=4
#SBATCH --gres=gpu:4
#SBATCH --ntasks-per-node=4
#SBATCH --mem=0
#SBATCH --time=0-02:00:00
# activate conda env
conda activate my_env
# -------------------------
# debugging flags (optional)
# export NCCL_DEBUG=INFO
# export PYTHONFAULTHANDLER=1
# on your cluster you might need these:
# set the network interface
# export NCCL_SOCKET_IFNAME=^docker0,lo
# might need the latest cuda
# module load NCCL/2.4.7-1-cuda.10.0
# -------------------------
# random port between 12k and 20k
export MASTER_PORT=$((12000 + RANDOM % 20000))
# run script from above
python minimal_multi_node_demo.py
@@ -1,70 +0,0 @@
"""
Multi-node example (GPU)
"""
import os
import numpy as np
import torch
from test_tube import HyperOptArgumentParser, Experiment
from pytorch_lightning import Trainer
from examples.new_project_templates.lightning_module_template import LightningTemplateModel
SEED = 2334
torch.manual_seed(SEED)
np.random.seed(SEED)
def main(hparams):
"""
Main training routine specific for this project
:param hparams:
:return:
"""
# ------------------------
# 1 INIT LIGHTNING MODEL
# ------------------------
model = LightningTemplateModel(hparams)
# ------------------------
# 2 INIT TEST TUBE EXP
# ------------------------
# init experiment
exp = Experiment(
name='test_exp',
save_dir=hyperparams.log_dir,
autosave=False,
description='test demo'
)
# ------------------------
# 2 INIT TRAINER
# ------------------------
trainer = Trainer(
experiment=exp,
gpus=8,
nb_gpu_nodes=2
)
# ------------------------
# 5 START TRAINING
# ------------------------
trainer.fit(model)
if __name__ == '__main__':
# use current dir for logging
root_dir = os.path.dirname(os.path.realpath(__file__))
log_dir = os.path.join(root_dir, 'pt_lightning_demo_logs')
parent_parser = HyperOptArgumentParser(strategy='grid_search', add_help=False)
parent_parser.add_argument('--log_dir', type=str, default=log_dir,
help='where to save logs')
# allow model to overwrite or extend args
parser = LightningTemplateModel.add_model_specific_args(parent_parser, root_dir)
hyperparams = parser.parse_args()
# ---------------------
# RUN TRAINING
# ---------------------
main(hyperparams)
-178
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@@ -1,178 +0,0 @@
"""
To run this template just do:
python gan.py
After a few epochs, launch tensorboard to see the images being generated at every batch.
tensorboard --logdir default
"""
from argparse import ArgumentParser
import os
import numpy as np
import torchvision
import torchvision.transforms as transforms
from torchvision.datasets import MNIST
from torch.utils.data import DataLoader
import torch.nn as nn
import torch.nn.functional as F
import torch
import pytorch_lightning as pl
from test_tube import Experiment
class Generator(nn.Module):
def __init__(self, latent_dim, img_shape):
super(Generator, self).__init__()
self.img_shape = img_shape
def block(in_feat, out_feat, normalize=True):
layers = [nn.Linear(in_feat, out_feat)]
if normalize:
layers.append(nn.BatchNorm1d(out_feat, 0.8))
layers.append(nn.LeakyReLU(0.2, inplace=True))
return layers
self.model = nn.Sequential(
*block(latent_dim, 128, normalize=False),
*block(128, 256),
*block(256, 512),
*block(512, 1024),
nn.Linear(1024, int(np.prod(img_shape))),
nn.Tanh()
)
def forward(self, z):
img = self.model(z)
img = img.view(img.size(0), *self.img_shape)
return img
class Discriminator(nn.Module):
def __init__(self, img_shape):
super(Discriminator, self).__init__()
self.model = nn.Sequential(
nn.Linear(int(np.prod(img_shape)), 512),
nn.LeakyReLU(0.2, inplace=True),
nn.Linear(512, 256),
nn.LeakyReLU(0.2, inplace=True),
nn.Linear(256, 1),
nn.Sigmoid(),
)
def forward(self, img):
img_flat = img.view(img.size(0), -1)
validity = self.model(img_flat)
return validity
class GAN(pl.LightningModule):
def __init__(self, hparams):
super(GAN, self).__init__()
self.hparams = hparams
# networks
mnist_shape = (1, 28, 28)
self.generator = Generator(latent_dim=hparams.latent_dim, img_shape=mnist_shape)
self.discriminator = Discriminator(img_shape=mnist_shape)
# cache for generated images
self.generated_imgs = None
def forward(self, z):
return self.generator(z)
def adversarial_loss(self, y_hat, y):
return F.binary_cross_entropy(y_hat, y)
def training_step(self, batch, batch_nb, optimizer_i):
imgs, _ = batch
# train generator
if optimizer_i == 0:
# sample noise
z = torch.randn(imgs.shape[0], self.hparams.latent_dim)
# match gpu device (or keep as cpu)
if self.on_gpu:
z = z.cuda(imgs.device.index)
# generate images
self.generated_imgs = self.forward(z)
# log sampled images
sample_imgs = self.generated_imgs[:6]
grid = torchvision.utils.make_grid(sample_imgs)
self.experiment.add_image('generated_images', grid, 0)
# ground truth result (ie: all fake)
valid = torch.ones(imgs.size(0), 1)
# adversarial loss is binary cross-entropy
g_loss = self.adversarial_loss(self.discriminator(self.generated_imgs), valid)
return g_loss
# train discriminator
if optimizer_i == 1:
# Measure discriminator's ability to classify real from generated samples
# how well can it label as real?
valid = torch.ones(imgs.size(0), 1)
real_loss = self.adversarial_loss(self.discriminator(imgs), valid)
# how well can it label as fake?
fake = torch.zeros(imgs.size(0), 1)
fake_loss = self.adversarial_loss(self.discriminator(self.generated_imgs.detach()), fake)
# discriminator loss is the average of these
d_loss = (real_loss + fake_loss) / 2
return d_loss
def configure_optimizers(self):
lr = self.hparams.lr
b1 = self.hparams.b1
b2 = self.hparams.b2
opt_g = torch.optim.Adam(self.generator.parameters(), lr=lr, betas=(b1, b2))
opt_d = torch.optim.Adam(self.discriminator.parameters(), lr=lr, betas=(b1, b2))
return [opt_g, opt_d], []
@pl.data_loader
def train_dataloader(self):
transform = transforms.Compose([transforms.ToTensor(),
transforms.Normalize([0.5], [0.5])])
dataset = MNIST(os.getcwd(), train=True, download=True, transform=transform)
return DataLoader(dataset, batch_size=self.hparams.batch_size)
def main(hparams):
# save tensorboard logs
exp = Experiment(save_dir=os.getcwd())
# init model
model = GAN(hparams)
# fit trainer on CPU
trainer = pl.Trainer(experiment=exp, max_nb_epochs=200)
trainer.fit(model)
if __name__ == '__main__':
parser = ArgumentParser()
parser.add_argument("--batch_size", type=int, default=64, help="size of the batches")
parser.add_argument("--lr", type=float, default=0.0002, help="adam: learning rate")
parser.add_argument("--b1", type=float, default=0.5, help="adam: decay of first order momentum of gradient")
parser.add_argument("--b2", type=float, default=0.999, help="adam: decay of first order momentum of gradient")
parser.add_argument("--latent_dim", type=int, default=100, help="dimensionality of the latent space")
hparams = parser.parse_args()
main(hparams)
+2 -8
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@@ -1,16 +1,10 @@
site_name: PyTorch lightning Documentation
site_name: Pytorch lightning Documentation
theme:
name: 'material'
docs_dir: docs
repo_name: 'williamFalcon/pytorch-lightning'
repo_url: https://github.com/williamFalcon/pytorch-lightning
site_dir: 'site'
site_description: 'Documentation for PyTorch LightningModule, the researcher version of keras.'
site_description: 'Documentation for Pytorch LightningModule, the researcher version of keras.'
dev_addr: '0.0.0.0:8000'
#google_analytics: ['UA-aasd', 'sitename']
markdown_extensions:
- codehilite:
guess_lang: false
linenums: true
+2 -8
View File
@@ -1,9 +1,3 @@
from .trainer.trainer import Trainer
from .models import Trainer
from .root_module.root_module import LightningModule
from .root_module.decorators import data_loader
__all__ = [
'Trainer',
'LightningModule',
'data_loader',
]
from .root_module.decorators import data_loader
+1 -7
View File
@@ -1,7 +1 @@
from .pt_callbacks import EarlyStopping, ModelCheckpoint, GradientAccumulationScheduler
__all__ = [
'EarlyStopping',
'ModelCheckpoint',
'GradientAccumulationScheduler',
]
from .pt_callbacks import EarlyStopping, ModelCheckpoint
+10 -42
View File
@@ -1,9 +1,5 @@
import os
import shutil
import warnings
import numpy as np
import os, shutil
from pytorch_lightning.pt_overrides.override_data_parallel import LightningDistributedDataParallel
@@ -12,6 +8,7 @@ class Callback(object):
# Properties
params: dict. Training parameters
(eg. verbosity, batch size, number of epochs...).
model: instance of `keras.models.Model`.
Reference of the model being trained.
The `logs` dictionary that callback methods
take as argument will contain keys for quantities relevant to
@@ -122,9 +119,9 @@ class EarlyStopping(Callback):
current = logs.get(self.monitor)
stop_training = False
if current is None:
print('Early stopping conditioned on metric `%s` '
'which is not available. Available metrics are: %s' %
(self.monitor, ','.join(list(logs.keys()))), RuntimeWarning)
print('Early stopping conditioned on metric `%s` ''which is not available. Available metrics are: %s' %
(self.monitor, ','.join(list(logs.keys()))), RuntimeWarning
)
exit(-1)
if self.monitor_op(current - self.min_delta, self.best):
@@ -188,7 +185,8 @@ class ModelCheckpoint(Callback):
if mode not in ['auto', 'min', 'max']:
print('ModelCheckpoint mode %s is unknown, '
'fallback to auto mode.' % (mode), RuntimeWarning)
'fallback to auto mode.' % (mode),
RuntimeWarning)
mode = 'auto'
if mode == 'min':
@@ -232,8 +230,8 @@ class ModelCheckpoint(Callback):
if self.save_best_only:
current = logs.get(self.monitor)
if current is None:
print('Can save best model only with %s available,'
' skipping.' % (self.monitor), RuntimeWarning)
print('Can save best model only with %s available, '
'skipping.' % (self.monitor), RuntimeWarning)
else:
if self.monitor_op(current, self.best):
if self.verbose > 0:
@@ -254,37 +252,6 @@ class ModelCheckpoint(Callback):
self.save_model(filepath, overwrite=False)
class GradientAccumulationScheduler(Callback):
"""Change gradient accumulation factor according to scheduling.
# Arguments
scheduling: dict, scheduling in format {epoch: accumulation_factor}
"""
def __init__(self, scheduling: dict):
if scheduling == {}: # empty dict error
raise TypeError("Empty dict cannot be interpreted correct")
for key in scheduling.keys():
if not isinstance(key, int) or not isinstance(scheduling[key], int):
raise TypeError("All epoches and accumulation factor must be integers")
minimal_epoch = min(scheduling.keys())
if minimal_epoch < 1:
msg = f"Epochs indexing from 1, epoch {minimal_epoch} cannot be interpreted correct"
raise IndexError(msg)
elif minimal_epoch != 1: # if user didnt define first epoch accumulation factor
scheduling.update({1: 1})
self.scheduling = scheduling
self.epochs = sorted(scheduling.keys())
def on_epoch_begin(self, epoch, trainer):
epoch += 1 # indexing epochs from 1
for i in reversed(range(len(self.epochs))):
if epoch >= self.epochs[i]:
trainer.accumulate_grad_batches = self.scheduling.get(self.epochs[i])
break
if __name__ == '__main__':
c = EarlyStopping(min_delta=0.9, patience=2, verbose=True)
losses = [10, 9, 8, 8, 6, 4.3, 5, 4.4, 2.8, 2.5]
@@ -293,3 +260,4 @@ if __name__ == '__main__':
print(loss)
if should_stop:
break
@@ -1,5 +1 @@
from .new_project_templates.lightning_module_template import LightningTemplateModel
__all__ = [
'LightningTemplateModel'
]
from .new_project_templates.lightning_module_template import LightningTemplateModel
@@ -1,6 +1,3 @@
"""
Example template for defining a system
"""
import os
from collections import OrderedDict
import torch.nn as nn
@@ -13,7 +10,7 @@ from torch import optim
from torch.utils.data import DataLoader
from torch.utils.data.distributed import DistributedSampler
import pytorch_lightning as pl
import pytorch_lightning as ptl
from pytorch_lightning.root_module.root_module import LightningModule
@@ -47,13 +44,11 @@ class LightningTemplateModel(LightningModule):
Layout model
:return:
"""
self.c_d1 = nn.Linear(in_features=self.hparams.in_features,
out_features=self.hparams.hidden_dim)
self.c_d1 = nn.Linear(in_features=self.hparams.in_features, out_features=self.hparams.hidden_dim)
self.c_d1_bn = nn.BatchNorm1d(self.hparams.hidden_dim)
self.c_d1_drop = nn.Dropout(self.hparams.drop_prob)
self.c_d2 = nn.Linear(in_features=self.hparams.hidden_dim,
out_features=self.hparams.out_features)
self.c_d2 = nn.Linear(in_features=self.hparams.hidden_dim, out_features=self.hparams.out_features)
# ---------------------
# TRAINING
@@ -79,14 +74,14 @@ class LightningTemplateModel(LightningModule):
nll = F.nll_loss(logits, labels)
return nll
def training_step(self, batch, batch_idx):
def training_step(self, data_batch, batch_i):
"""
Lightning calls this inside the training loop
:param batch:
:param data_batch:
:return:
"""
# forward pass
x, y = batch
x, y = data_batch
x = x.view(x.size(0), -1)
y_hat = self.forward(x)
@@ -105,13 +100,13 @@ class LightningTemplateModel(LightningModule):
# can also return just a scalar instead of a dict (return loss_val)
return output
def validation_step(self, batch, batch_idx):
def validation_step(self, data_batch, batch_i):
"""
Lightning calls this inside the validation loop
:param batch:
:param data_batch:
:return:
"""
x, y = batch
x, y = data_batch
x = x.view(x.size(0), -1)
y_hat = self.forward(x)
@@ -151,24 +146,13 @@ class LightningTemplateModel(LightningModule):
val_loss_mean = 0
val_acc_mean = 0
for output in outputs:
val_loss = output['val_loss']
# reduce manually when using dp
if self.trainer.use_dp:
val_loss = torch.mean(val_loss)
val_loss_mean += val_loss
# reduce manually when using dp
val_acc = output['val_acc']
if self.trainer.use_dp:
val_acc = torch.mean(val_acc)
val_acc_mean += val_acc
val_loss_mean += output['val_loss']
val_acc_mean += output['val_acc']
val_loss_mean /= len(outputs)
val_acc_mean /= len(outputs)
tqdm_dict = {'val_loss': val_loss_mean, 'val_acc': val_acc_mean}
return tqdm_dict
tqdm_dic = {'val_loss': val_loss_mean.item(), 'val_acc': val_acc_mean.item()}
return tqdm_dic
# ---------------------
# TRAINING SETUP
@@ -184,18 +168,19 @@ class LightningTemplateModel(LightningModule):
def __dataloader(self, train):
# init data generators
transform = transforms.Compose([transforms.ToTensor(),
transforms.Normalize((0.5,), (1.0,))])
dataset = MNIST(root=self.hparams.data_root, train=train,
transform=transform, download=True)
transform = transforms.Compose([transforms.ToTensor(), transforms.Normalize((0.5,), (1.0,))])
dataset = MNIST(root=self.hparams.data_root, train=train, transform=transform, download=True)
# when using multi-node (ddp) we need to add the datasampler
# when using multi-node we need to add the datasampler
train_sampler = None
batch_size = self.hparams.batch_size
if self.use_ddp:
train_sampler = DistributedSampler(dataset, rank=self.trainer.proc_rank)
batch_size = batch_size // self.trainer.world_size # scale batch size
try:
if self.on_gpu:
train_sampler = DistributedSampler(dataset, rank=self.trainer.proc_rank)
batch_size = batch_size // self.trainer.world_size # scale batch size
except Exception as e:
pass
should_shuffle = train_sampler is None
loader = DataLoader(
@@ -207,23 +192,23 @@ class LightningTemplateModel(LightningModule):
return loader
@pl.data_loader
def train_dataloader(self):
print('training data loader called')
@ptl.data_loader
def tng_dataloader(self):
print('tng data loader called')
return self.__dataloader(train=True)
@pl.data_loader
@ptl.data_loader
def val_dataloader(self):
print('val data loader called')
return self.__dataloader(train=False)
@pl.data_loader
@ptl.data_loader
def test_dataloader(self):
print('test data loader called')
return self.__dataloader(train=False)
@staticmethod
def add_model_specific_args(parent_parser, root_dir): # pragma: no cover
def add_model_specific_args(parent_parser, root_dir): # pragma: no cover
"""
Parameters you define here will be available to your model through self.hparams
:param parent_parser:
@@ -233,28 +218,22 @@ class LightningTemplateModel(LightningModule):
parser = HyperOptArgumentParser(strategy=parent_parser.strategy, parents=[parent_parser])
# param overwrites
# parser.set_defaults(gradient_clip_val=5.0)
# parser.set_defaults(gradient_clip=5.0)
# network params
parser.add_argument('--in_features', default=28 * 28, type=int)
parser.add_argument('--in_features', default=28*28, type=int)
parser.add_argument('--out_features', default=10, type=int)
# use 500 for CPU, 50000 for GPU to see speed difference
parser.add_argument('--hidden_dim', default=50000, type=int)
parser.opt_list('--drop_prob', default=0.2, options=[0.2, 0.5], type=float, tunable=True)
parser.opt_list('--learning_rate', default=0.001 * 8, type=float,
options=[0.0001, 0.0005, 0.001],
tunable=True)
parser.add_argument('--hidden_dim', default=50000, type=int) # use 500 for CPU, 50000 for GPU to see speed difference
# data
parser.add_argument('--data_root', default=os.path.join(root_dir, 'mnist'), type=str)
# training params (opt)
parser.opt_list('--optimizer_name', default='adam', type=str,
options=['adam'], tunable=False)
parser.opt_list('--learning_rate', default=0.001*8, type=float, options=[0.0001, 0.0005, 0.001, 0.005],
tunable=False)
parser.opt_list('--optimizer_name', default='adam', type=str, options=['adam'], tunable=False)
# if using 2 nodes with 4 gpus each the batch size here
# (256) will be 256 / (2*8) = 16 per gpu
parser.opt_list('--batch_size', default=256 * 8, type=int,
options=[32, 64, 128, 256], tunable=False,
help='batch size will be divided over all gpus being used across all nodes')
# if using 2 nodes with 4 gpus each the batch size here (256) will be 256 / (2*8) = 16 per gpu
parser.opt_list('--batch_size', default=256*8, type=int, options=[32, 64, 128, 256], tunable=False,
help='batch size will be divided over all the gpus being used across all nodes')
return parser
@@ -1,28 +1,37 @@
"""
Multi-node example (GPU)
"""
import os
import sys
import numpy as np
from time import sleep
import torch
from test_tube import HyperOptArgumentParser, Experiment, SlurmCluster
from pytorch_lightning import Trainer
from pytorch_lightning.models.trainer import Trainer
from pytorch_lightning.utils.arg_parse import add_default_args
from pytorch_lightning.callbacks import EarlyStopping, ModelCheckpoint
from examples.new_project_templates.lightning_module_template import LightningTemplateModel
PORT = np.random.randint(12000, 20000, 1)[0]
SEED = 2334
torch.manual_seed(SEED)
np.random.seed(SEED)
# ---------------------
# DEFINE MODEL HERE
# ---------------------
from lightning_module_template import LightningTemplateModel
# ---------------------
"""
Allows training by using command line arguments
Run by:
# TYPE YOUR RUN COMMAND HERE
"""
def main_local(hparams):
main(hparams, None, None)
def main(hparams, cluster):
def main(hparams, cluster, results_dict):
"""
Main training routine specific for this project
:param hparams:
@@ -48,7 +57,6 @@ def main(hparams, cluster):
name=hyperparams.experiment_name,
save_dir=hyperparams.test_tube_save_path,
autosave=False,
version=hparams.hpc_exp_number, # match the slurm job version number
description='test demo'
)
@@ -79,9 +87,10 @@ def main(hparams, cluster):
# ------------------------
trainer = Trainer(
experiment=exp,
cluster=cluster,
checkpoint_callback=checkpoint,
early_stop_callback=early_stop,
gpus=hparams.per_experiment_nb_gpus,
gpus=hparams.gpus,
nb_gpu_nodes=hyperparams.nb_gpu_nodes
)
@@ -100,7 +109,7 @@ def optimize_on_cluster(hyperparams):
)
# email for cluster coms
cluster.notify_job_status(email=hyperparams.email, on_done=True, on_fail=True)
cluster.notify_job_status(email='add_email_here', on_done=True, on_fail=True)
# configure cluster
cluster.per_experiment_nb_gpus = hyperparams.per_experiment_nb_gpus
@@ -110,36 +119,17 @@ def optimize_on_cluster(hyperparams):
cluster.memory_mb_per_node = 0
# any modules for code to run in env
cluster.add_command(f'source activate {hyperparams.conda_env}')
# set DDP master port
cluster.add_command(f'export MASTER_PORT={PORT}')
# OPTIONAL for debugging
# without these flags errors in your code will
# appear to be nccl errors
cluster.add_command('export NCCL_DEBUG=INFO')
cluster.add_command('export PYTHONFAULTHANDLER=1')
# depending on your cluster config, you probably want
# to limit the wired connection device
# cluster.add_command('export NCCL_SOCKET_IFNAME=^docker0,lo')
# depending on your cluster, you might need to load
# the latest NCCL version
# cluster.load_modules(['NCCL/2.4.7-1-cuda.10.0'])
cluster.add_command('source activate lightning')
# run only on 32GB voltas
cluster.add_slurm_cmd(cmd='constraint', value='volta32gb',
comment='use 32gb gpus')
cluster.add_slurm_cmd(cmd='partition', value=hyperparams.gpu_partition,
comment='use 32gb gpus')
cluster.add_slurm_cmd(cmd='constraint', value='volta32gb', comment='use 32gb gpus')
cluster.add_slurm_cmd(cmd='partition', value=hyperparams.gpu_partition, comment='use 32gb gpus')
# run hopt
# creates and submits jobs to slurm
cluster.optimize_parallel_cluster_gpu(
main,
nb_trials=hyperparams.num_hyperparam_trials,
nb_trials=hyperparams.nb_hopt_trials,
job_name=hyperparams.experiment_name
)
@@ -157,28 +147,19 @@ if __name__ == '__main__':
parent_parser = HyperOptArgumentParser(strategy='grid_search', add_help=False)
# cluster args not defined inside the model
parent_parser.add_argument('--per_experiment_nb_gpus', type=int,
default=8, help='how many gpus to use in a node')
parent_parser.add_argument('--nb_gpu_nodes', type=int, default=2,
help='how many nodes to use in a cluster')
parent_parser.add_argument('--test_tube_save_path', type=str, default=test_tube_dir,
help='where to save logs')
parent_parser.add_argument('--slurm_log_path', type=str, default=slurm_out_dir,
help='where to save slurm meta')
parent_parser.add_argument('--model_save_path', type=str, default=checkpoint_dir,
help='where to save model')
parent_parser.add_argument('--experiment_name', type=str, default='pt_lightning_exp_a',
help='test tube exp name')
parent_parser.add_argument('--num_hyperparam_trials', type=int, default=6,
help='how many grid search trials to run')
parent_parser.add_argument('--email', type=str, default='add@email.com',
help='email for jobs')
parent_parser.add_argument('--conda_env', type=str, default='base',
help='email for jobs')
parent_parser.add_argument('--gpu_partition', type=str, help='consult your cluster manual')
# TODO: make 1 param
parent_parser.add_argument('--per_experiment_nb_gpus', type=int, help='how many gpus to use in a node')
parent_parser.add_argument('--gpus', type=str, default='-1', help='how many gpus to use in the node')
parent_parser.add_argument('--nb_gpu_nodes', type=int, default=1, help='how many nodes to use in a cluster')
parent_parser.add_argument('--test_tube_save_path', type=str, default=test_tube_dir, help='where to save logs')
parent_parser.add_argument('--slurm_log_path', type=str, default=slurm_out_dir, help='where to save slurm meta')
parent_parser.add_argument('--model_save_path', type=str, default=checkpoint_dir, help='where to save model')
parent_parser.add_argument('--experiment_name', type=str, default='pt_lightning_exp_a', help='test tube exp name')
parent_parser.add_argument('--nb_hopt_trials', type=int, default=1, help='how many grid search trials to run')
# allow model to overwrite or extend args
parser = LightningTemplateModel.add_model_specific_args(parent_parser, root_dir)
hyperparams = parser.parse_args()
@@ -1,20 +1,24 @@
"""
Runs a model on a single node on CPU only..
Runs a model on a single node across N-gpus.
"""
import os
import sys
import numpy as np
from time import sleep
import torch
from test_tube import HyperOptArgumentParser, Experiment
from pytorch_lightning import Trainer
from pytorch_lightning.callbacks import EarlyStopping, ModelCheckpoint
from test_tube import HyperOptArgumentParser, Experiment, SlurmCluster
from pytorch_lightning.models.trainer import Trainer
from pytorch_lightning.utils.arg_parse import add_default_args
from examples.new_project_templates.lightning_module_template import LightningTemplateModel
from pytorch_lightning.callbacks import EarlyStopping, ModelCheckpoint
SEED = 2334
torch.manual_seed(SEED)
np.random.seed(SEED)
from lightning_module_template import LightningTemplateModel
def main(hparams):
"""
@@ -25,11 +29,14 @@ def main(hparams):
# ------------------------
# 1 INIT LIGHTNING MODEL
# ------------------------
print('loading model...')
model = LightningTemplateModel(hparams)
print('model built')
# ------------------------
# 2 INIT EXP
# 2 INIT TEST TUBE EXP
# ------------------------
# init experiment
exp = Experiment(
name=hyperparams.experiment_name,
@@ -87,12 +94,9 @@ if __name__ == '__main__':
parent_parser = HyperOptArgumentParser(strategy='grid_search', add_help=False)
# gpu args
parent_parser.add_argument('--test_tube_save_path', type=str,
default=test_tube_dir, help='where to save logs')
parent_parser.add_argument('--model_save_path', type=str,
default=checkpoint_dir, help='where to save model')
parent_parser.add_argument('--experiment_name', type=str,
default='pt_lightning_exp_a', help='test tube exp name')
parent_parser.add_argument('--test_tube_save_path', type=str, default=test_tube_dir, help='where to save logs')
parent_parser.add_argument('--model_save_path', type=str, default=checkpoint_dir, help='where to save model')
parent_parser.add_argument('--experiment_name', type=str, default='pt_lightning_exp_a', help='test tube exp name')
# allow model to overwrite or extend args
parser = LightningTemplateModel.add_model_specific_args(parent_parser, root_dir)
@@ -102,5 +106,5 @@ if __name__ == '__main__':
# RUN TRAINING
# ---------------------
# run on HPC cluster
print('RUNNING ON CPU')
print(f'RUNNING ON CPU')
main(hyperparams)
@@ -1,20 +1,24 @@
"""
16-bit single node, CPU example
Runs a model on a single node across N-gpus.
"""
import os
import sys
import numpy as np
from time import sleep
import torch
from test_tube import HyperOptArgumentParser, Experiment
from pytorch_lightning import Trainer
from pytorch_lightning.callbacks import EarlyStopping, ModelCheckpoint
from test_tube import HyperOptArgumentParser, Experiment, SlurmCluster
from pytorch_lightning.models.trainer import Trainer
from pytorch_lightning.utils.arg_parse import add_default_args
from examples.new_project_templates.lightning_module_template import LightningTemplateModel
from pytorch_lightning.callbacks import EarlyStopping, ModelCheckpoint
SEED = 2334
torch.manual_seed(SEED)
np.random.seed(SEED)
from lightning_module_template import LightningTemplateModel
def main(hparams):
"""
@@ -92,15 +96,10 @@ if __name__ == '__main__':
parent_parser = HyperOptArgumentParser(strategy='grid_search', add_help=False)
# gpu args
parent_parser.add_argument('--gpus', type=str, default='-1',
help='how many gpus to use in the node.'
'value -1 uses all the gpus on the node')
parent_parser.add_argument('--test_tube_save_path', type=str, default=test_tube_dir,
help='where to save logs')
parent_parser.add_argument('--model_save_path', type=str, default=checkpoint_dir,
help='where to save model')
parent_parser.add_argument('--experiment_name', type=str, default='pt_lightning_exp_a',
help='test tube exp name')
parent_parser.add_argument('--gpus', type=str, default='-1', help='how many gpus to use in the node. -1 uses all the gpus on the node')
parent_parser.add_argument('--test_tube_save_path', type=str, default=test_tube_dir, help='where to save logs')
parent_parser.add_argument('--model_save_path', type=str, default=checkpoint_dir, help='where to save model')
parent_parser.add_argument('--experiment_name', type=str, default='pt_lightning_exp_a', help='test tube exp name')
# allow model to overwrite or extend args
parser = LightningTemplateModel.add_model_specific_args(parent_parser, root_dir)
@@ -1,20 +1,24 @@
"""
Runs a model on a single node across N-gpus using dataParallel
Runs a model on a single node across N-gpus.
"""
import os
import sys
import numpy as np
from time import sleep
import torch
from test_tube import HyperOptArgumentParser, Experiment
from pytorch_lightning import Trainer
from pytorch_lightning.callbacks import EarlyStopping, ModelCheckpoint
from test_tube import HyperOptArgumentParser, Experiment, SlurmCluster
from pytorch_lightning.models.trainer import Trainer
from pytorch_lightning.utils.arg_parse import add_default_args
from examples.new_project_templates.lightning_module_template import LightningTemplateModel
from pytorch_lightning.callbacks import EarlyStopping, ModelCheckpoint
SEED = 2334
torch.manual_seed(SEED)
np.random.seed(SEED)
from lightning_module_template import LightningTemplateModel
def main(hparams):
"""
@@ -71,7 +75,6 @@ def main(hparams):
checkpoint_callback=checkpoint,
early_stop_callback=early_stop,
gpus=hparams.gpus,
distributed_backend=hparams.dist_backend,
)
# ------------------------
@@ -92,17 +95,10 @@ if __name__ == '__main__':
parent_parser = HyperOptArgumentParser(strategy='grid_search', add_help=False)
# gpu args
parent_parser.add_argument('--gpus', type=str, default='-1',
help='how many gpus to use in the node.'
' value -1 uses all the gpus on the node')
parent_parser.add_argument('--dist_backend', type=str, default='dp',
help='When using multiple GPUs set Trainer(distributed_backend=dp) (or ddp)')
parent_parser.add_argument('--test_tube_save_path', type=str, default=test_tube_dir,
help='where to save logs')
parent_parser.add_argument('--model_save_path', type=str, default=checkpoint_dir,
help='where to save model')
parent_parser.add_argument('--experiment_name', type=str, default='pt_lightning_exp_a',
help='test tube exp name')
parent_parser.add_argument('--gpus', type=str, default='-1', help='how many gpus to use in the node. -1 uses all the gpus on the node')
parent_parser.add_argument('--test_tube_save_path', type=str, default=test_tube_dir, help='where to save logs')
parent_parser.add_argument('--model_save_path', type=str, default=checkpoint_dir, help='where to save model')
parent_parser.add_argument('--experiment_name', type=str, default='pt_lightning_exp_a', help='test tube exp name')
# allow model to overwrite or extend args
parser = LightningTemplateModel.add_model_specific_args(parent_parser, root_dir)
@@ -2,19 +2,23 @@
Runs a model on a single node across N-gpus.
"""
import os
import sys
import numpy as np
from time import sleep
import torch
from test_tube import HyperOptArgumentParser, Experiment
from pytorch_lightning import Trainer
from pytorch_lightning.callbacks import EarlyStopping, ModelCheckpoint
from test_tube import HyperOptArgumentParser, Experiment, SlurmCluster
from pytorch_lightning.models.trainer import Trainer
from pytorch_lightning.utils.arg_parse import add_default_args
from examples.new_project_templates.lightning_module_template import LightningTemplateModel
from pytorch_lightning.callbacks import EarlyStopping, ModelCheckpoint
SEED = 2334
torch.manual_seed(SEED)
np.random.seed(SEED)
from lightning_module_template import LightningTemplateModel
def main(hparams):
"""
@@ -71,7 +75,6 @@ def main(hparams):
checkpoint_callback=checkpoint,
early_stop_callback=early_stop,
gpus=hparams.gpus,
distributed_backend=hparams.dist_backend
)
# ------------------------
@@ -92,17 +95,10 @@ if __name__ == '__main__':
parent_parser = HyperOptArgumentParser(strategy='grid_search', add_help=False)
# gpu args
parent_parser.add_argument('--gpus', type=str, default='-1',
help='how many gpus to use in the node.'
' value -1 uses all the gpus on the node')
parent_parser.add_argument('--dist_backend', type=str, default='ddp',
help='When using multiple GPUs set Trainer(distributed_backend=dp) (or ddp)')
parent_parser.add_argument('--test_tube_save_path', type=str, default=test_tube_dir,
help='where to save logs')
parent_parser.add_argument('--model_save_path', type=str, default=checkpoint_dir,
help='where to save model')
parent_parser.add_argument('--experiment_name', type=str, default='pt_lightning_exp_a',
help='test tube exp name')
parent_parser.add_argument('--gpus', type=str, default='-1', help='how many gpus to use in the node. -1 uses all the gpus on the node')
parent_parser.add_argument('--test_tube_save_path', type=str, default=test_tube_dir, help='where to save logs')
parent_parser.add_argument('--model_save_path', type=str, default=checkpoint_dir, help='where to save model')
parent_parser.add_argument('--experiment_name', type=str, default='pt_lightning_exp_a', help='test tube exp name')
# allow model to overwrite or extend args
parser = LightningTemplateModel.add_model_specific_args(parent_parser, root_dir)
@@ -0,0 +1,112 @@
"""
Runs a model on a single node across N-gpus.
"""
import os
import sys
import numpy as np
from time import sleep
import torch
from test_tube import HyperOptArgumentParser, Experiment, SlurmCluster
from pytorch_lightning.models.trainer import Trainer
from pytorch_lightning.utils.arg_parse import add_default_args
from pytorch_lightning.callbacks import EarlyStopping, ModelCheckpoint
SEED = 2334
torch.manual_seed(SEED)
np.random.seed(SEED)
from lightning_module_template import LightningTemplateModel
def main(hparams):
"""
Main training routine specific for this project
:param hparams:
:return:
"""
# ------------------------
# 1 INIT LIGHTNING MODEL
# ------------------------
print('loading model...')
model = LightningTemplateModel(hparams)
print('model built')
# ------------------------
# 2 INIT TEST TUBE EXP
# ------------------------
# init experiment
exp = Experiment(
name=hyperparams.experiment_name,
save_dir=hyperparams.test_tube_save_path,
autosave=False,
description='test demo'
)
exp.argparse(hparams)
exp.save()
# ------------------------
# 3 DEFINE CALLBACKS
# ------------------------
model_save_path = '{}/{}/{}'.format(hparams.model_save_path, exp.name, exp.version)
early_stop = EarlyStopping(
monitor='val_acc',
patience=3,
verbose=True,
mode='max'
)
checkpoint = ModelCheckpoint(
filepath=model_save_path,
save_best_only=True,
verbose=True,
monitor='val_loss',
mode='min'
)
# ------------------------
# 4 INIT TRAINER
# ------------------------
trainer = Trainer(
experiment=exp,
checkpoint_callback=checkpoint,
early_stop_callback=early_stop,
gpus=hparams.gpus,
)
# ------------------------
# 5 START TRAINING
# ------------------------
trainer.fit(model)
if __name__ == '__main__':
# dirs
root_dir = os.path.dirname(os.path.realpath(__file__))
demo_log_dir = os.path.join(root_dir, 'pt_lightning_demo_logs')
checkpoint_dir = os.path.join(demo_log_dir, 'model_weights')
test_tube_dir = os.path.join(demo_log_dir, 'test_tube_data')
# although we user hyperOptParser, we are using it only as argparse right now
parent_parser = HyperOptArgumentParser(strategy='grid_search', add_help=False)
# gpu args
parent_parser.add_argument('--gpus', type=str, default='0', help='how many gpus to use in the node. -1 uses all the gpus on the node')
parent_parser.add_argument('--test_tube_save_path', type=str, default=test_tube_dir, help='where to save logs')
parent_parser.add_argument('--model_save_path', type=str, default=checkpoint_dir, help='where to save model')
parent_parser.add_argument('--experiment_name', type=str, default='pt_lightning_exp_a', help='test tube exp name')
# allow model to overwrite or extend args
parser = LightningTemplateModel.add_model_specific_args(parent_parser, root_dir)
hyperparams = parser.parse_args()
# ---------------------
# RUN TRAINING
# ---------------------
# run on HPC cluster
print(f'RUNNING INTERACTIVE MODE ON GPUS. gpu ids: {hyperparams.gpus}')
main(hyperparams)
@@ -2,11 +2,10 @@ import os
import sys
from test_tube import HyperOptArgumentParser, Experiment
from pytorch_lightning import Trainer
from pytorch_lightning.utilities.arg_parse import add_default_args
from pytorch_lightning.models.trainer import Trainer
from pytorch_lightning.utils.arg_parse import add_default_args
from pytorch_lightning.callbacks.pt_callbacks import EarlyStopping, ModelCheckpoint
from examples.new_project_templates.lightning_module_template import LightningTemplateModel
from docs.source.examples.example_model import ExampleModel
def main(hparams):
@@ -29,7 +28,7 @@ def main(hparams):
exp.save()
# build model
model = LightningTemplateModel(hparams)
model = ExampleModel(hparams)
# callbacks
early_stop = EarlyStopping(
@@ -67,7 +66,7 @@ if __name__ == '__main__':
add_default_args(parent_parser, root_dir)
# allow model to overwrite or extend args
parser = LightningTemplateModel.add_model_specific_args(parent_parser)
parser = ExampleModel.add_model_specific_args(parent_parser)
hyperparams = parser.parse_args()
# train model
+1
View File
@@ -0,0 +1 @@
from .trainer import Trainer
+888
View File
@@ -0,0 +1,888 @@
"""
The trainer handles all the logic for running a val loop, training loop, distributing, etc...
"""
import subprocess
import traceback
import warnings
import os
import pdb
import re
import torch
from torch.utils.data.distributed import DistributedSampler
import torch.multiprocessing as mp
import torch.distributed as dist
import numpy as np
import tqdm
from pytorch_lightning.root_module.memory import get_gpu_memory_map
from pytorch_lightning.root_module.model_saving import TrainerIO
from pytorch_lightning.pt_overrides.override_data_parallel import LightningDistributedDataParallel, LightningDataParallel
from pytorch_lightning.utils.debugging import MisconfigurationException
try:
from apex import amp
APEX_AVAILABLE = True
except Exception:
APEX_AVAILABLE = False
def reduce_distributed_output(output, nb_gpus):
if nb_gpus <= 1:
return output
# when using DP, we get one output per gpu
# average outputs and return
if type(output) is torch.Tensor:
return output.mean()
for k, v in output.items():
# recurse on nested dics
if isinstance(output[k], dict):
output[k] = reduce_distributed_output(output[k], nb_gpus)
# reduce only metrics that have the same nb of gpus
elif output[k].size(0) == nb_gpus:
reduced = torch.mean(output[k])
output[k] = reduced
return output
class Trainer(TrainerIO):
def __init__(self,
experiment,
early_stop_callback=None,
checkpoint_callback=None,
gradient_clip=0,
cluster=None,
process_position=0,
current_gpu_name=0,
nb_gpu_nodes=1,
gpus=None,
progress_bar=True,
overfit_pct=0.0,
track_grad_norm=-1,
check_val_every_n_epoch=1,
fast_dev_run=False,
accumulate_grad_batches=1,
max_nb_epochs=1000, min_nb_epochs=1,
train_percent_check=1.0, val_percent_check=1.0, test_percent_check=1.0,
val_check_interval=0.95,
log_save_interval=100, add_log_row_interval=10,
distributed_backend='dp',
use_amp=False,
print_nan_grads=False,
print_weights_summary=True,
amp_level='O2',
nb_sanity_val_steps=5):
"""
:param experiment: Test-tube experiment
:param early_stop_callback: from pytorch_lightning import EarlyStopping
:param checkpoint_callback: from pytorch_lightning import Checkpoint
:param gradient_clip:
:param cluster:
:param process_position:
:param current_gpu_name:
:param nb_gpu_nodes:
:param gpus:
:param progress_bar:
:param overfit_pct:
:param track_grad_norm:
:param check_val_every_n_epoch:
:param fast_dev_run:
:param accumulate_grad_batches:
:param max_nb_epochs:
:param min_nb_epochs:
:param train_percent_check:
:param val_percent_check:
:param test_percent_check:
:param val_check_interval:
:param log_save_interval:
:param add_log_row_interval:
:param distributed_backend: 'np' to use DistributedParallel, 'ddp' to use DistributedDataParallel
:param use_amp:
:param print_nan_grads:
:param print_weights_summary:
:param amp_level:
:param nb_sanity_val_steps:
"""
# Transfer params
self.nb_gpu_nodes = nb_gpu_nodes
self.gradient_clip = gradient_clip
self.check_val_every_n_epoch = check_val_every_n_epoch
self.enable_early_stop = early_stop_callback is not None
self.track_grad_norm = track_grad_norm
self.fast_dev_run = fast_dev_run
self.on_gpu = gpus is not None and torch.cuda.is_available()
self.progress_bar = progress_bar
self.experiment = experiment
self.exp_save_path = experiment.get_data_path(experiment.name, experiment.version)
self.cluster = cluster
self.process_position = process_position
self.current_gpu_name = current_gpu_name
self.print_weights_summary = print_weights_summary
self.checkpoint_callback = checkpoint_callback
if self.checkpoint_callback is not None:
self.checkpoint_callback.save_function = self.save_checkpoint
self.early_stop = early_stop_callback
self.model = None
self.max_nb_epochs = max_nb_epochs
self.accumulate_grad_batches = accumulate_grad_batches
self.early_stop_callback = early_stop_callback
self.min_nb_epochs = min_nb_epochs
self.nb_sanity_val_steps = nb_sanity_val_steps
self.lr_schedulers = []
self.amp_level = amp_level
self.print_nan_grads = print_nan_grads
self.data_parallel_device_ids = None
self.world_size = 1
self.node_rank = 0
self.use_ddp = False
self.use_dp = False
# training bookeeping
self.total_batch_nb = 0
self.running_loss = []
self.avg_loss = 0
self.batch_nb = 0
self.tqdm_metrics = {}
self.nb_val_batches = None
self.nb_tng_batches = None
self.nb_test_batches = None
# gpus come in as a string.
# if gpus = -1 then use all available devices
# otherwise, split the string using commas
if gpus is not None:
if type(gpus) is list:
self.data_parallel_device_ids = gpus
elif type(gpus) is str:
if gpus == '-1':
self.data_parallel_device_ids = list(range(0, torch.cuda.device_count()))
else:
self.data_parallel_device_ids = [int(x.strip()) for x in gpus.split(',')]
else:
raise Exception('gpus has to be a string or list of ids')
# set the correct cuda visible devices (using pci order)
os.environ["CUDA_DEVICE_ORDER"] = "PCI_BUS_ID"
os.environ["CUDA_VISIBLE_DEVICES"] = ','.join([str(x) for x in self.data_parallel_device_ids])
print(f'VISIBLE GPUS: {os.environ["CUDA_VISIBLE_DEVICES"]}')
# make DP and DDP mutually exclusive
# single GPU will also use DP with devices=[0]
have_gpus = self.data_parallel_device_ids is not None and len(self.data_parallel_device_ids) > 0
if have_gpus:
self.use_dp = distributed_backend == 'dp'
self.use_ddp = distributed_backend == 'ddp'
# use ddp automatically if nb_gpu_nodes > 1
if nb_gpu_nodes > 1 and self.use_dp: # pragma: no cover
self.use_ddp = True
self.use_dp = False
w = 'DataParallel does not support nb_gpu_nodes > 1. ' \
'Switching to DistributedDataParallel for you. ' \
'To silence this warning set distributed_backend=ddp'
warnings.warn(w)
# extract SLURM flag vars
# whenever we have the correct number of tasks, we let slurm manage processes
# otherwise we launch the required number of processes
if self.use_ddp:
self.nb_requested_gpus = len(self.data_parallel_device_ids) * self.nb_gpu_nodes
self.nb_slurm_tasks = 0
try:
self.nb_slurm_tasks = int(os.environ['SLURM_NTASKS'])
self.is_slurm_managing_tasks = self.nb_slurm_tasks == self.nb_requested_gpus
except Exception as e:
# likely not on slurm, so set the slurm managed flag to false
self.is_slurm_managing_tasks = False
# process info
self.proc_rank = 0
# training state
self.optimizers = None
self.prog_bar = None
self.global_step = 0
self.current_epoch = 0
self.total_batches = 0
# logging
self.log_save_interval = log_save_interval
self.val_check_interval = val_check_interval
self.add_log_row_interval = add_log_row_interval
# dataloaders
self.tng_dataloader = None
self.test_dataloader = None
self.val_dataloader = None
# how much of the data to use
self.__determine_data_use_amount(train_percent_check, val_percent_check, test_percent_check, overfit_pct)
print('gpu available: {}, used: {}'.format(torch.cuda.is_available(), self.on_gpu))
# 16 bit mixed precision training using apex
self.use_amp = use_amp and APEX_AVAILABLE
if self.use_amp:
print('using 16bit precision')
if use_amp and not APEX_AVAILABLE: # pragma: no cover
msg = '''
You set use_amp=True but do not have apex installed.
Install apex first using this guide and rerun with use_amp=True:
https://github.com/NVIDIA/apex#linux
this run will NOT use 16 bit precision
'''
raise ModuleNotFoundError(msg)
@property
def data_parallel(self):
return self.use_dp or self.use_ddp
def __determine_data_use_amount(self, train_percent_check, val_percent_check, test_percent_check, overfit_pct):
"""
Use less data for debugging purposes
"""
self.train_percent_check = train_percent_check
self.val_percent_check = val_percent_check
self.test_percent_check = test_percent_check
if overfit_pct > 0:
self.train_percent_check = overfit_pct
self.val_percent_check = overfit_pct
self.test_percent_check = overfit_pct
def __get_model(self):
return self.model.module if self.data_parallel else self.model
def __is_function_implemented(self, f_name):
model = self.__get_model()
f_op = getattr(model, f_name, None)
return callable(f_op)
@property
def __tng_tqdm_dic(self):
# ForkedPdb().set_trace()
tqdm_dic = {
'tng_loss': '{0:.3f}'.format(self.avg_loss),
'v_nb': '{}'.format(self.experiment.version),
'epoch': '{}'.format(self.current_epoch),
'batch_nb':'{}'.format(self.batch_nb),
}
tqdm_dic.update(self.tqdm_metrics)
if self.on_gpu:
tqdm_dic['gpu'] = '{}'.format(self.current_gpu_name)
return tqdm_dic
@property
def tng_tqdm_dic(self):
"""
Read-only for tqdm metrics
:return:
"""
return self.__tng_tqdm_dic
def __layout_bookeeping(self):
# determine number of training batches
self.nb_tng_batches = len(self.tng_dataloader)
self.nb_tng_batches = int(self.nb_tng_batches * self.train_percent_check)
# determine number of validation batches
self.nb_val_batches = len(self.val_dataloader)
self.nb_val_batches = int(self.nb_val_batches * self.val_percent_check)
self.nb_val_batches = max(1, self.nb_val_batches)
self.nb_val_batches = self.nb_val_batches
# determine number of test batches
self.nb_test_batches = len(self.test_dataloader)
self.nb_test_batches = int(self.nb_test_batches * self.test_percent_check)
# determine when to check validation
self.val_check_batch = int(self.nb_tng_batches * self.val_check_interval)
def __add_tqdm_metrics(self, metrics):
for k, v in metrics.items():
if type(v) is torch.Tensor:
v = v.item()
self.tqdm_metrics[k] = v
def validate(self, model, dataloader, max_batches):
"""
Run validation code
:param model: PT model
:param dataloader: PT dataloader
:param max_batches: Scalar
:return:
"""
# enable eval mode
model.zero_grad()
model.eval()
# disable gradients to save memory
torch.set_grad_enabled(False)
# bookkeeping
outputs = []
# run training
for batch_i, data_batch in enumerate(dataloader):
if data_batch is None: # pragma: no cover
continue
# stop short when on fast dev run
if max_batches is not None and batch_i >= max_batches:
break
# -----------------
# RUN VALIDATION STEP
# -----------------
if self.use_ddp:
output = model(data_batch, batch_i)
elif self.use_dp:
output = model(data_batch, batch_i)
output = reduce_distributed_output(output, len(self.data_parallel_device_ids))
else:
output = model.validation_step(data_batch, batch_i)
outputs.append(output)
# batch done
if self.progress_bar and self.prog_bar is not None:
self.prog_bar.update(1)
# give model a chance to do something with the outputs
if self.data_parallel:
val_results = model.module.validation_end(outputs)
else:
val_results = model.validation_end(outputs)
# enable train mode again
model.train()
# enable gradients to save memory
torch.set_grad_enabled(True)
return val_results
def get_dataloaders(self, model):
"""
Dataloaders are provided by the model
:param model:
:return:
"""
self.tng_dataloader = model.tng_dataloader
self.test_dataloader = model.test_dataloader
self.val_dataloader = model.val_dataloader
if self.use_ddp and not isinstance(self.tng_dataloader.sampler, DistributedSampler):
msg = '''
when using multiple gpus and multiple nodes you must pass a DistributedSampler to DataLoader(sampler).
ie: this:
dataset = myDataset()
dataloader = Dataloader(dataset)
becomes:
dataset = myDataset()
dist_sampler = torch.utils.data.distributed.DistributedSampler(dataset)
dataloader = Dataloader(dataset, sampler=dist_sampler)
'''
raise MisconfigurationException(msg)
# -----------------------------
# MODEL TRAINING
# -----------------------------
def fit(self, model):
# when using multi-node or DDP within a node start each module in a separate process
if self.use_ddp:
# must copy only the meta of the exp so it survives pickle/unpickle when going to new process
self.experiment = self.experiment.get_meta_copy()
if self.is_slurm_managing_tasks:
task = int(os.environ['SLURM_LOCALID'])
self.ddp_train(task, model)
else:
msg = f"""
You requested {self.nb_requested_gpus} GPUs but launched {self.nb_slurm_tasks} slurm tasks.
We will launch {self.nb_requested_gpus} processes for you.
We recommend you let slurm manage the processes by setting: --ntasks-per-node={self.nb_requested_gpus}
If you're not using SLURM, ignore this message!
"""
warnings.warn(msg)
mp.spawn(self.ddp_train, nprocs=len(self.data_parallel_device_ids), args=(model, ))
# 1 gpu or dp option triggers training using DP module
# easier to avoid NCCL issues
elif self.use_dp:
self.__dp_train(model)
# ON CPU
else:
# run through amp wrapper
if self.use_amp:
raise MisconfigurationException('amp + cpu is not supported. Please use a GPU option')
# CHOOSE OPTIMIZER
# allow for lr schedulers as well
self.optimizers = model.configure_optimizers()
if len(self.optimizers) == 2:
self.optimizers, self.lr_schedulers = self.optimizers
self.__run_pretrain_routine(model)
# return 1 when finished
# used for testing or when we need to know that training succeeded
return 1
def __dp_train(self, model):
# CHOOSE OPTIMIZER
# allow for lr schedulers as well
self.optimizers = model.configure_optimizers()
if len(self.optimizers) == 2:
self.optimizers, self.lr_schedulers = self.optimizers
model.cuda(self.data_parallel_device_ids[0])
# check for this bug (amp + dp + !01 doesn't work)
# https://github.com/NVIDIA/apex/issues/227
if self.use_dp and self.use_amp:
m = f'amp level {self.amp_level} with DataParallel is not supported. ' \
f'See this note from NVIDIA for more info: https://github.com/NVIDIA/apex/issues/227. ' \
f'We recommend you switch to ddp if you want to use amp'
raise MisconfigurationException(m)
model = LightningDataParallel(model, device_ids=self.data_parallel_device_ids)
self.__run_pretrain_routine(model)
def ddp_train(self, gpu_nb, model):
"""
Entry point into a DP thread
:param gpu_nb:
:param model:
:param cluster_obj:
:return:
"""
# node rank using relative slurm id
# otherwise default to node rank 0
try:
node_id = os.environ['SLURM_NODEID']
self.node_rank = int(node_id)
except Exception as e:
self.node_rank = 0
# recover original exp before went into process
# init in write mode only on proc 0
self.experiment.debug = self.proc_rank > 0
self.experiment = self.experiment.get_non_ddp_exp()
# show progbar only on prog_rank 0
self.prog_bar = self.prog_bar and self.node_rank == 0 and gpu_nb == 0
# determine which process we are and world size
self.proc_rank = self.node_rank * len(self.data_parallel_device_ids) + gpu_nb
self.world_size = self.nb_gpu_nodes * len(self.data_parallel_device_ids)
# let the exp know the rank to avoid overwriting logs
self.experiment.rank = self.proc_rank
# set up server using proc 0's ip address
# try to init for 20 times at max in case ports are taken
# where to store ip_table
self.__init_tcp_connection()
# CHOOSE OPTIMIZER
# allow for lr schedulers as well
self.optimizers = model.configure_optimizers()
if len(self.optimizers) == 2:
self.optimizers, self.lr_schedulers = self.optimizers
# MODEL
# copy model to each gpu
torch.cuda.set_device(gpu_nb)
model.cuda(gpu_nb)
# AMP
# run through amp wrapper before going to distributed DP
if self.use_amp:
# An example
model, optimizers = amp.initialize(
model, self.optimizers, opt_level=self.amp_level,
)
self.optimizers = optimizers
model = LightningDistributedDataParallel(model, device_ids=[gpu_nb], find_unused_parameters=True)
# continue training routine
self.__run_pretrain_routine(model)
def __init_tcp_connection(self):
"""
Connect all procs in the world using the env:// init
Use the first node as the root address
:param port:
:param tries:
:return:
"""
# sets the appropriate port
try:
port = os.environ['MASTER_PORT']
except Exception as e:
port = 12910
os.environ['MASTER_PORT'] = f'{port}'
# figure out the root node addr
try:
root_node = os.environ['SLURM_NODELIST'].split(' ')[0]
except Exception as e:
root_node = '127.0.0.2'
root_node = self.resolve_root_node_address(root_node)
os.environ['MASTER_ADDR'] = root_node
dist.init_process_group("nccl", rank=self.proc_rank, world_size=self.world_size)
def resolve_root_node_address(self, root_node):
if '[' in root_node:
name = root_node.split('[')[0]
number = root_node.split(',')[0]
if '-' in number:
number = number.split('-')[0]
number = re.sub('[^0-9]', '', number)
root_node = name + number
return root_node
def __run_pretrain_routine(self, model):
"""
Sanity check a few things before starting actual training
:param model:
:return:
"""
ref_model = model
if self.data_parallel:
ref_model = model.module
ref_model.trainer = self
# set local properties on the model
ref_model.on_gpu = self.on_gpu
# transfer data loaders from model
self.get_dataloaders(ref_model)
# init training constants
self.__layout_bookeeping()
# print model summary
if self.proc_rank == 0 and self.print_weights_summary:
ref_model.summarize()
# give model convenience properties
ref_model.trainer = self
ref_model.experiment = self.experiment
# run tiny validation to make sure program won't crash during val
_ = self.validate(model, self.val_dataloader, max_batches=self.nb_sanity_val_steps)
# save exp to get started
if self.proc_rank == 0:
self.experiment.save()
# track model now.
# if cluster resets state, the model will update with the saved weights
self.model = model
# enable cluster checkpointing
# also restores training state
if self.cluster is not None: # pragma: no cover
self.enable_auto_hpc_walltime_manager()
# ---------------------------
# CORE TRAINING LOOP
# ---------------------------
self.__train()
def __train(self):
# run all epochs
for epoch_nb in range(self.current_epoch, self.max_nb_epochs):
# update the lr scheduler
if self.lr_schedulers is not None:
for lr_scheduler in self.lr_schedulers:
lr_scheduler.step()
model = self.__get_model()
model.current_epoch = epoch_nb
# hook
if self.__is_function_implemented('on_epoch_start'):
model = self.__get_model()
model.on_epoch_start()
self.current_epoch = epoch_nb
self.total_batches = self.nb_tng_batches + self.nb_val_batches
self.batch_loss_value = 0 # accumulated grads
# init progbar when requested
if self.progress_bar:
self.prog_bar = tqdm.tqdm(range(self.total_batches), position=self.process_position)
for batch_nb, data_batch in enumerate(self.tng_dataloader):
self.batch_nb = batch_nb
self.global_step += 1
model = self.__get_model()
model.global_step = self.global_step
# stop when the flag is changed or we've gone past the amount requested in the batches
self.total_batch_nb += 1
met_batch_limit = batch_nb > self.nb_tng_batches
if met_batch_limit:
break
# ---------------
# RUN TRAIN STEP
# ---------------
batch_result = self.__run_tng_batch(data_batch, batch_nb)
early_stop_epoch = batch_result == -1
# ---------------
# RUN VAL STEP
# ---------------
is_val_check_batch = (batch_nb + 1) % self.val_check_batch == 0
if self.fast_dev_run or is_val_check_batch or early_stop_epoch:
self.__run_validation()
# when batch should be saved
if (batch_nb + 1) % self.log_save_interval == 0 or early_stop_epoch:
if self.proc_rank == 0:
self.experiment.save()
# when metrics should be logged
if batch_nb % self.add_log_row_interval == 0 or early_stop_epoch:
# count items in memory
# nb_params, nb_tensors = count_mem_items()
model = self.__get_model()
metrics = self.__tng_tqdm_dic
# add gpu memory
if self.on_gpu:
mem_map = get_gpu_memory_map()
metrics.update(mem_map)
# add norms
if self.track_grad_norm > 0:
model = self.__get_model()
grad_norm_dic = model.grad_norm(self.track_grad_norm)
metrics.update(grad_norm_dic)
if self.__is_function_implemented('on_tng_metrics'):
model.on_tng_metrics(metrics)
# log metrics
scalar_metrics = self.__metrics_to_scalars(metrics, blacklist=self.__log_vals_blacklist())
if self.proc_rank == 0:
self.experiment.log(scalar_metrics, global_step=self.global_step)
self.experiment.save()
# hook
if self.__is_function_implemented('on_batch_end'):
model = self.__get_model()
model.on_batch_end()
# end epoch early
if early_stop_epoch:
break
# hook
if self.__is_function_implemented('on_epoch_end'):
model = self.__get_model()
model.on_epoch_end()
# early stopping
met_min_epochs = epoch_nb > self.min_nb_epochs
if self.enable_early_stop and met_min_epochs:
should_stop = self.early_stop_callback.on_epoch_end(epoch=epoch_nb, logs=self.__tng_tqdm_dic)
# stop training
stop = should_stop and met_min_epochs
if stop:
return
def __metrics_to_scalars(self, metrics, blacklist=[]):
new_metrics = {}
for k, v in metrics.items():
if type(v) is torch.Tensor:
v = v.item()
if type(v) is dict:
v = self.__metrics_to_scalars(v)
if k not in blacklist:
new_metrics[k] = float(v)
return new_metrics
def __log_vals_blacklist(self):
"""avoid logging some vals lightning uses to maintain state"""
blacklist = {'batch_nb', 'v_nb', 'gpu'}
return blacklist
def __run_tng_batch(self, data_batch, batch_nb):
if data_batch is None:
return 0
# hook
if self.__is_function_implemented('on_batch_start'):
model_ref = self.__get_model()
response = model_ref.on_batch_start(data_batch)
if response == -1:
return -1
if self.progress_bar:
self.prog_bar.update(1)
# forward pass
# return a scalar value and a dic with tqdm metrics
if self.use_ddp:
output = self.model(data_batch, batch_nb)
elif self.use_dp:
output = self.model(data_batch, batch_nb)
output = reduce_distributed_output(output, len(self.data_parallel_device_ids))
else:
output = self.model.training_step(data_batch, batch_nb)
try:
model_specific_tqdm_metrics_dic = output['prog']
except Exception as e:
model_specific_tqdm_metrics_dic = {}
# if output dict doesn't have the keyword loss
# then assume the output=loss if scalar
try:
loss = output['loss']
except Exception as e:
if type(output) is torch.Tensor:
loss = output
self.__add_tqdm_metrics(model_specific_tqdm_metrics_dic)
# backward pass
if self.use_amp:
# scale loss when using amp
for optimizer in self.optimizers:
with amp.scale_loss(loss, optimizer) as scaled_loss:
scaled_loss.backward()
else:
loss.backward()
# insert after step hook
if self.__is_function_implemented('on_after_backward'):
model_ref = self.__get_model()
response = model_ref.on_after_backward()
if self.print_nan_grads:
model = self.__get_model()
for param in model.parameters():
print(param.grad.float().sum())
# avoid memory leaks
self.batch_loss_value += loss.item()
# gradient update with accumulated gradients
if (self.batch_nb + 1) % self.accumulate_grad_batches == 0:
# clip gradients
if self.gradient_clip > 0:
model = self.__get_model()
torch.nn.utils.clip_grad_norm(model.parameters(), self.gradient_clip)
# update gradients across all optimizers
for optimizer in self.optimizers:
optimizer.step()
# insert after step hook
if self.__is_function_implemented('on_before_zero_grad'):
model_ref = self.__get_model()
response = model_ref.on_before_zero_grad(optimizer)
# clear gradients
optimizer.zero_grad()
# queuing loss across batches blows it up proportionally... divide out the number accumulated
self.batch_loss_value = self.batch_loss_value / self.accumulate_grad_batches
# track loss
self.running_loss.append(self.batch_loss_value)
self.batch_loss_value = 0
self.avg_loss = np.mean(self.running_loss[-100:])
# update progbar
if self.progress_bar:
# add model specific metrics
tqdm_metrics = self.__tng_tqdm_dic
self.prog_bar.set_postfix(**tqdm_metrics)
# activate batch end hook
if self.__is_function_implemented('on_batch_end'):
model = self.__get_model()
model.on_batch_end()
return 0
def __run_validation(self):
# decide if can check epochs
can_check_epoch = (self.current_epoch + 1) % self.check_val_every_n_epoch == 0
if self.fast_dev_run:
print('skipping to check performance bc of --fast_dev_run')
elif not can_check_epoch:
return
# hook
if self.__is_function_implemented('on_pre_performance_check'):
model = self.__get_model()
model.on_pre_performance_check()
# use full val set on end of epoch
# use a small portion otherwise
max_batches = None if not self.fast_dev_run else 1
model_specific_tqdm_metrics_dic = self.validate(
self.model,
self.val_dataloader,
max_batches
)
self.__add_tqdm_metrics(model_specific_tqdm_metrics_dic)
# hook
if self.__is_function_implemented('on_post_performance_check'):
model = self.__get_model()
model.on_post_performance_check()
if self.progress_bar:
# add model specific metrics
tqdm_metrics = self.__tng_tqdm_dic
self.prog_bar.set_postfix(**tqdm_metrics)
# model checkpointing
if self.proc_rank == 0 and self.checkpoint_callback is not None:
print('save callback...')
self.checkpoint_callback.on_epoch_end(epoch=self.current_epoch, logs=self.__tng_tqdm_dic)
@@ -6,6 +6,7 @@ from itertools import chain
import threading
import torch
from torch.cuda._utils import _get_device_index
import pdb
def _find_tensors(obj): # pragma: no cover
@@ -56,8 +57,6 @@ class LightningDataParallel(DataParallel):
# lightning
if self.module.training:
return self.module.training_step(*inputs[0], **kwargs[0])
elif self.module.testing:
return self.module.test_step(*inputs[0], **kwargs[0])
else:
return self.module.validation_step(*inputs[0], **kwargs[0])
@@ -65,6 +64,7 @@ class LightningDataParallel(DataParallel):
outputs = self.parallel_apply(replicas, inputs, kwargs)
return self.gather(outputs, self.output_device)
def parallel_apply(self, replicas, inputs, kwargs):
return parallel_apply(replicas, inputs, kwargs, self.device_ids[:len(replicas)])
@@ -91,8 +91,6 @@ class LightningDistributedDataParallel(DistributedDataParallel):
# lightning
if self.module.training:
output = self.module.training_step(*inputs[0], **kwargs[0])
elif self.module.testing:
output = self.module.test_step(*inputs[0], **kwargs[0])
else:
output = self.module.validation_step(*inputs[0], **kwargs[0])
else:
@@ -157,10 +155,6 @@ def parallel_apply(modules, inputs, kwargs_tup=None, devices=None): # pragma: n
# CHANGE
if module.training:
output = module.training_step(*input, **kwargs)
elif module.testing:
output = module.test_step(*input, **kwargs)
else:
output = module.validation_step(*input, **kwargs)
# ---------------
+3 -14
View File
@@ -1,5 +1,3 @@
import traceback
def data_loader(fn):
"""
@@ -12,17 +10,8 @@ def data_loader(fn):
@property
def _data_loader(self):
try:
value = getattr(self, attr_name)
except AttributeError:
try:
value = fn(self) # Lazy evaluation, done only once.
except AttributeError as e:
# Guard against AttributeError suppression. (Issue #142)
traceback.print_exc()
error = f'{fn.__name__}: An AttributeError was encountered: ' + str(e)
raise RuntimeError(error) from e
setattr(self, attr_name, value) # Memoize evaluation.
return value
if not hasattr(self, attr_name):
setattr(self, attr_name, fn(self))
return getattr(self, attr_name)
return _data_loader
+7 -7
View File
@@ -1,9 +1,10 @@
import numpy as np
from torch import nn
"""
Module to describe gradients
"""
from torch import nn
class GradInformation(nn.Module):
@@ -17,13 +18,12 @@ class GradInformation(nn.Module):
total_norm += param_norm ** norm_type
norm = param_norm ** (1 / norm_type)
grad = round(norm.data.cpu().numpy().flatten()[0], 3)
results['grad_{}_norm_{}'.format(norm_type, i)] = grad
except Exception:
results['grad_{}_norm_{}'.format(norm_type, i)] = round(norm.data.cpu().numpy().flatten()[0], 3)
except Exception as e:
# this param had no grad
pass
total_norm = total_norm ** (1. / norm_type)
grad = round(total_norm.data.cpu().numpy().flatten()[0], 3)
results['grad_{}_norm_total'.format(norm_type)] = grad
results['grad_{}_norm_total'.format(norm_type)] = round(total_norm.data.cpu().numpy().flatten()[0], 3)
return results
+3 -11
View File
@@ -1,16 +1,7 @@
import torch
class ModelHooks(torch.nn.Module):
def on_sanity_check_start(self):
"""
Called before starting evaluate
:return:
"""
pass
def on_batch_start(self, batch):
def on_batch_start(self, data_batch):
pass
def on_batch_end(self):
@@ -28,7 +19,7 @@ class ModelHooks(torch.nn.Module):
def on_post_performance_check(self):
pass
def on_training_metrics(self, metrics):
def on_tng_metrics(self, metrics):
pass
def on_before_zero_grad(self, optimizer):
@@ -51,3 +42,4 @@ class ModelHooks(torch.nn.Module):
:return:
"""
pass
+13 -13
View File
@@ -1,15 +1,15 @@
'''
Generates a summary of a model's layers and dimensionality
'''
import gc
import torch
import gc
import subprocess
import numpy as np
import pandas as pd
'''
Generates a summary of a model's layers and dimensionality
'''
class ModelSummary(object):
def __init__(self, model):
@@ -94,7 +94,7 @@ class ModelSummary(object):
mods = list(self.model.modules())
sizes = []
for i in range(1, len(mods)):
for i in range(1,len(mods)):
m = mods[i]
p = list(m.parameters())
modsz = []
@@ -127,7 +127,7 @@ class ModelSummary(object):
if self.model.example_input_array is not None:
cols.extend(['In_sizes', 'Out_sizes'])
df = pd.DataFrame(np.zeros((len(self.layer_names), len(cols))))
df = pd.DataFrame(np.zeros( (len(self.layer_names), len(cols))))
df.columns = cols
df['Name'] = self.layer_names
@@ -152,16 +152,16 @@ class ModelSummary(object):
self.make_summary()
def print_mem_stack(): # pragma: no cover
def print_mem_stack(): # pragma: no cover
for obj in gc.get_objects():
try:
if torch.is_tensor(obj) or (hasattr(obj, 'data') and torch.is_tensor(obj.data)):
print(type(obj), obj.size())
except Exception:
except Exception as e:
pass
def count_mem_items(): # pragma: no cover
def count_mem_items(): # pragma: no cover
nb_params = 0
nb_tensors = 0
for obj in gc.get_objects():
@@ -172,7 +172,7 @@ def count_mem_items(): # pragma: no cover
nb_params += 1
else:
nb_tensors += 1
except Exception:
except Exception as e:
pass
return nb_params, nb_tensors
@@ -196,6 +196,6 @@ def get_gpu_memory_map():
gpu_memory = [int(x) for x in result.strip().split('\n')]
gpu_memory_map = {}
for k, v in zip(range(len(gpu_memory)), gpu_memory):
k = 'gpu_%i' % k
k = f'gpu_{k}'
gpu_memory_map[k] = v
return gpu_memory_map
@@ -1,3 +1,10 @@
import torch
import os
import re
import pdb
from pytorch_lightning.pt_overrides.override_data_parallel import LightningDistributedDataParallel, LightningDataParallel
class ModelIO(object):
def on_load_checkpoint(self, checkpoint):
@@ -32,3 +39,201 @@ class ModelIO(object):
:return:
"""
pass
class TrainerIO(object):
def __get_model(self):
is_dp_module = type(self.model) is LightningDistributedDataParallel or type(self.model) is LightningDataParallel
model = self.model.module if is_dp_module else self.model
return model
# --------------------
# MODEL SAVE CHECKPOINT
# --------------------
def save_checkpoint(self, filepath):
checkpoint = self.dump_checkpoint()
# do the actual save
torch.save(checkpoint, filepath)
def dump_checkpoint(self):
checkpoint = {
'epoch': self.current_epoch,
'global_step': self.global_step
}
if self.checkpoint_callback is not None:
checkpoint['checkpoint_callback_best'] = self.checkpoint_callback.best
if self.early_stop_callback is not None:
checkpoint['early_stop_callback_wait'] = self.early_stop_callback.wait
checkpoint['early_stop_callback_patience'] = self.early_stop_callback.patience
# save optimizers
optimizer_states = []
for i, optimizer in enumerate(self.optimizers):
optimizer_states.append(optimizer.state_dict())
checkpoint['optimizer_states'] = optimizer_states
# save lr schedulers
lr_schedulers = []
for i, scheduler in enumerate(self.lr_schedulers):
lr_schedulers.append(scheduler.state_dict())
checkpoint['lr_schedulers'] = lr_schedulers
# add the state_dict from the model
model = self.__get_model()
checkpoint['state_dict'] = model.state_dict()
# give the model a chance to add a few things
model.on_save_checkpoint(checkpoint)
return checkpoint
# --------------------
# HPC IO
# --------------------
def enable_auto_hpc_walltime_manager(self):
if self.cluster is None:
return
# allow test tube to handle model check pointing automatically
self.cluster.set_checkpoint_save_function(
self.hpc_save,
kwargs={
'folderpath': self.checkpoint_callback.filepath,
'experiment': self.experiment
}
)
self.cluster.set_checkpoint_load_function(
self.hpc_load,
kwargs={
'folderpath': self.checkpoint_callback.filepath,
'on_gpu': self.on_gpu
}
)
def restore_training_state(self, checkpoint):
"""
Restore trainer state.
Model will get its change to update
:param checkpoint:
:return:
"""
if self.checkpoint_callback is not None:
self.checkpoint_callback.best = checkpoint['checkpoint_callback_best']
if self.early_stop_callback is not None:
self.early_stop_callback.wait = checkpoint['early_stop_callback_wait']
self.early_stop_callback.patience = checkpoint['early_stop_callback_patience']
self.global_step = checkpoint['global_step']
self.current_epoch = checkpoint['epoch']
# restore the optimizers
optimizer_states = checkpoint['optimizer_states']
for optimizer, opt_state in zip(self.optimizers, optimizer_states):
optimizer.load_state_dict(opt_state)
# restore the lr schedulers
lr_schedulers = checkpoint['lr_schedulers']
for scheduler, lrs_state in zip(self.lr_schedulers, lr_schedulers):
scheduler.load_state_dict(lrs_state)
# ----------------------------------
# PRIVATE OPS
# ----------------------------------
def hpc_save(self, folderpath, experiment):
# make sure the checkpoint folder exists
os.makedirs(folderpath, exist_ok=True)
# save exp to make sure we get all the metrics
experiment.save()
# close experiment to avoid issues
experiment.close()
ckpt_number = self.max_ckpt_in_folder(folderpath) + 1
if not os.path.exists(folderpath):
os.makedirs(folderpath, exist_ok=True)
filepath = '{}/hpc_ckpt_{}.ckpt'.format(folderpath, ckpt_number)
# give model a chance to do something on hpc_save
model = self.__get_model()
checkpoint = self.dump_checkpoint()
model.on_hpc_save(checkpoint)
# do the actual save
torch.save(checkpoint, filepath)
return filepath
def hpc_load(self, folderpath, on_gpu):
filepath = '{}/hpc_ckpt_{}.ckpt'.format(folderpath, self.max_ckpt_in_folder(folderpath))
if on_gpu:
checkpoint = torch.load(filepath)
else:
checkpoint = torch.load(filepath, map_location=lambda storage, loc: storage)
# load training state (affects trainer only)
self.restore_training_state(checkpoint)
# load model state
model = self.__get_model()
# load the state_dict on the model automatically
model.load_state_dict(checkpoint['state_dict'])
# call model hook
model.on_hpc_load(checkpoint)
def max_ckpt_in_folder(self, path):
files = os.listdir(path)
files = [x for x in files if 'ckpt_' in x]
if len(files) == 0:
return 0
ckpt_vs = []
for name in files:
name = name.split('ckpt_')[-1]
name = re.sub('[^0-9]', '', name)
ckpt_vs.append(int(name))
return max(ckpt_vs)
def load_hparams_from_tags_csv(tags_csv):
from argparse import Namespace
import pandas as pd
tags_df = pd.read_csv(tags_csv)
dic = tags_df.to_dict(orient='records')
ns_dict = {row['key']: convert(row['value']) for row in dic}
ns = Namespace(**ns_dict)
return ns
def convert(val):
constructors = [int, float, str]
if type(val) is str:
if val.lower() == 'true':
return True
if val.lower() == 'false':
return False
for c in constructors:
try:
return c(val)
except ValueError:
pass
return val
+27 -62
View File
@@ -1,9 +1,7 @@
import torch
from pytorch_lightning.root_module.memory import ModelSummary
from pytorch_lightning.root_module.grads import GradInformation
from pytorch_lightning.trainer.trainer_io import load_hparams_from_tags_csv
from pytorch_lightning.root_module.model_saving import ModelIO
from pytorch_lightning.root_module.model_saving import ModelIO, load_hparams_from_tags_csv
from pytorch_lightning.root_module.hooks import ModelHooks
from pytorch_lightning.root_module.decorators import data_loader
@@ -24,9 +22,6 @@ class LightningModule(GradInformation, ModelIO, ModelHooks):
# track if gpu was requested for checkpointing
self.on_gpu = False
self.use_dp = False
self.use_ddp = False
self.use_amp = False
def forward(self, *args, **kwargs):
"""
@@ -37,52 +32,29 @@ class LightningModule(GradInformation, ModelIO, ModelHooks):
"""
raise NotImplementedError
def training_step(self, *args, **kwargs):
def validation_step(self, data_batch, batch_nb):
"""
return loss, dict with metrics for tqdm
:param called with batch, batch_nb
additional: optimizer_i if multiple optimizers used
return whatever outputs will need to be aggregated in validation_end
:param data_batch:
:return:
"""
raise NotImplementedError
def validation_step(self, *args, **kwargs):
"""
return whatever outputs will need to be aggregated in validation_end
OPTIONAL
:param called with batch, batch_nb
additional: dataset_i if multiple val datasets used
:return:
"""
pass
def test_step(self, *args, **kwargs):
"""
return whatever outputs will need to be aggregated in test_end
OPTIONAL
:param called with batch, batch_nb
additional: dataset_i if multiple val datasets used
:return:
"""
pass
def validation_end(self, outputs):
"""
Outputs has the appended output after each validation step
OPTIONAL
:param outputs:
:return: dic_with_metrics for tqdm
"""
pass
raise NotImplementedError
def test_end(self, outputs):
def training_step(self, data_batch, batch_nb):
"""
Outputs has the appended output after each test step
OPTIONAL
:param outputs:
:return: dic_with_metrics for tqdm
return loss, dict with metrics for tqdm
:param data_batch:
:return:
"""
pass
raise NotImplementedError
def configure_optimizers(self):
"""
@@ -91,24 +63,10 @@ class LightningModule(GradInformation, ModelIO, ModelHooks):
"""
raise NotImplementedError
def optimizer_step(self, epoch_nb, batch_nb, optimizer, optimizer_i):
"""
Do something instead of the standard optimizer behavior
:param epoch_nb:
:param batch_nb:
:param optimizer:
:param optimizer_i:
:return:
"""
optimizer.step()
# clear gradients
optimizer.zero_grad()
@data_loader
def train_dataloader(self):
def tng_dataloader(self):
"""
Implement a PyTorch DataLoader
Implement a function to load an h5py of this data
:return:
"""
raise NotImplementedError
@@ -116,21 +74,21 @@ class LightningModule(GradInformation, ModelIO, ModelHooks):
@data_loader
def test_dataloader(self):
"""
Implement a PyTorch DataLoader
Implement a function to load an h5py of this data
:return:
"""
return None
raise NotImplementedError
@data_loader
def val_dataloader(self):
"""
Implement a PyTorch DataLoader
Implement a function to load an h5py of this data
:return:
"""
return None
raise NotImplementedError
@classmethod
def load_from_metrics(cls, weights_path, tags_csv, on_gpu):
def load_from_metrics(cls, weights_path, tags_csv, on_gpu, map_location=None):
"""
Primary way of loading model from csv weights path
:param weights_path:
@@ -142,9 +100,13 @@ class LightningModule(GradInformation, ModelIO, ModelHooks):
hparams = load_hparams_from_tags_csv(tags_csv)
hparams.__setattr__('on_gpu', on_gpu)
# load on CPU only to avoid OOM issues
# then its up to user to put back on GPUs
checkpoint = torch.load(weights_path, map_location=lambda storage, loc: storage)
if on_gpu:
if map_location is not None:
checkpoint = torch.load(weights_path, map_location=map_location)
else:
checkpoint = torch.load(weights_path)
else:
checkpoint = torch.load(weights_path, map_location=lambda storage, loc: storage)
# load the state_dict on the model automatically
model = cls(hparams)
@@ -166,3 +128,6 @@ class LightningModule(GradInformation, ModelIO, ModelHooks):
def unfreeze(self):
for param in self.parameters():
param.requires_grad = True
-12
View File
@@ -1,12 +0,0 @@
from .lm_test_module import LightningTestModel
from .lm_test_module_base import LightningTestModelBase
from .lm_test_module_mixins import (
LightningValidationStepMixin,
LightningValidationMixin,
LightningValidationStepMultipleDataloadersMixin,
LightningValidationMultipleDataloadersMixin,
LightningTestStepMixin,
LightningTestMixin,
LightningTestStepMultipleDataloadersMixin,
LightningTestMultipleDataloadersMixin,
)
@@ -1,27 +0,0 @@
import os
from collections import OrderedDict
import torch
import torch.nn as nn
import torch.nn.functional as F
from torch import optim
from torch.utils.data import DataLoader
from torch.utils.data.distributed import DistributedSampler
from torchvision.datasets import MNIST
from torchvision import transforms
from test_tube import HyperOptArgumentParser
from pytorch_lightning.root_module.root_module import LightningModule
from pytorch_lightning import data_loader
from .lm_test_module_base import LightningTestModelBase
from .lm_test_module_mixins import LightningValidationMixin, LightningTestMixin
class LightningTestModel(LightningValidationMixin, LightningTestMixin, LightningTestModelBase):
"""
Most common test case. Validation and test dataloaders
"""
def on_training_metrics(self, logs):
logs['some_tensor_to_test'] = torch.rand(1)
@@ -1,387 +0,0 @@
import os
from collections import OrderedDict
import torch
import torch.nn as nn
import torch.nn.functional as F
from torch import optim
from torch.utils.data import DataLoader
from torch.utils.data.distributed import DistributedSampler
from torchvision.datasets import MNIST
from torchvision import transforms
from test_tube import HyperOptArgumentParser
from pytorch_lightning.root_module.root_module import LightningModule
from pytorch_lightning import data_loader
class LightningValidationStepMixin:
"""
Add val_dataloader and validation_step methods for the case
when val_dataloader returns a single dataloader
"""
@data_loader
def val_dataloader(self):
return self._dataloader(train=False)
def validation_step(self, batch, batch_idx):
"""
Lightning calls this inside the validation loop
:param batch:
:return:
"""
x, y = batch
x = x.view(x.size(0), -1)
y_hat = self.forward(x)
loss_val = self.loss(y, y_hat)
# acc
labels_hat = torch.argmax(y_hat, dim=1)
val_acc = torch.sum(y == labels_hat).item() / (len(y) * 1.0)
val_acc = torch.tensor(val_acc)
if self.on_gpu:
val_acc = val_acc.cuda(loss_val.device.index)
# in DP mode (default) make sure if result is scalar, there's another dim in the beginning
if self.trainer.use_dp:
loss_val = loss_val.unsqueeze(0)
val_acc = val_acc.unsqueeze(0)
# alternate possible outputs to test
if batch_idx % 1 == 0:
output = OrderedDict({
'val_loss': loss_val,
'val_acc': val_acc,
})
return output
if batch_idx % 2 == 0:
return val_acc
if batch_idx % 3 == 0:
output = OrderedDict({
'val_loss': loss_val,
'val_acc': val_acc,
'test_dic': {'val_loss_a': loss_val}
})
return output
class LightningValidationMixin(LightningValidationStepMixin):
"""
Add val_dataloader, validation_step, and validation_end methods for the case
when val_dataloader returns a single dataloader
"""
def validation_end(self, outputs):
"""
Called at the end of validation to aggregate outputs
:param outputs: list of individual outputs of each validation step
:return:
"""
# if returned a scalar from validation_step, outputs is a list of tensor scalars
# we return just the average in this case (if we want)
# return torch.stack(outputs).mean()
val_loss_mean = 0
val_acc_mean = 0
for output in outputs:
val_loss = output['val_loss']
# reduce manually when using dp
if self.trainer.use_dp:
val_loss = torch.mean(val_loss)
val_loss_mean += val_loss
# reduce manually when using dp
val_acc = output['val_acc']
if self.trainer.use_dp:
val_acc = torch.mean(val_acc)
val_acc_mean += val_acc
val_loss_mean /= len(outputs)
val_acc_mean /= len(outputs)
tqdm_dict = {'val_loss': val_loss_mean.item(), 'val_acc': val_acc_mean.item()}
return tqdm_dict
class LightningValidationStepMultipleDataloadersMixin:
"""
Add val_dataloader and validation_step methods for the case
when val_dataloader returns multiple dataloaders
"""
@data_loader
def val_dataloader(self):
return [self._dataloader(train=False), self._dataloader(train=False)]
def validation_step(self, batch, batch_idx, dataloader_idx):
"""
Lightning calls this inside the validation loop
:param batch:
:return:
"""
x, y = batch
x = x.view(x.size(0), -1)
y_hat = self.forward(x)
loss_val = self.loss(y, y_hat)
# acc
labels_hat = torch.argmax(y_hat, dim=1)
val_acc = torch.sum(y == labels_hat).item() / (len(y) * 1.0)
val_acc = torch.tensor(val_acc)
if self.on_gpu:
val_acc = val_acc.cuda(loss_val.device.index)
# in DP mode (default) make sure if result is scalar, there's another dim in the beginning
if self.trainer.use_dp:
loss_val = loss_val.unsqueeze(0)
val_acc = val_acc.unsqueeze(0)
# alternate possible outputs to test
if batch_idx % 1 == 0:
output = OrderedDict({
'val_loss': loss_val,
'val_acc': val_acc,
})
return output
if batch_idx % 2 == 0:
return val_acc
if batch_idx % 3 == 0:
output = OrderedDict({
'val_loss': loss_val,
'val_acc': val_acc,
'test_dic': {'val_loss_a': loss_val}
})
return output
if batch_idx % 5 == 0:
output = OrderedDict({
f'val_loss_{dataloader_idx}': loss_val,
f'val_acc_{dataloader_idx}': val_acc,
})
return output
class LightningValidationMultipleDataloadersMixin(LightningValidationStepMultipleDataloadersMixin):
"""
Add val_dataloader, validation_step, and validation_end methods for the case
when val_dataloader returns multiple dataloaders
"""
def validation_end(self, outputs):
"""
Called at the end of validation to aggregate outputs
:param outputs: list of individual outputs of each validation step
:return:
"""
# if returned a scalar from validation_step, outputs is a list of tensor scalars
# we return just the average in this case (if we want)
# return torch.stack(outputs).mean()
val_loss_mean = 0
val_acc_mean = 0
i = 0
for dl_output in outputs:
for output in dl_output:
val_loss = output['val_loss']
# reduce manually when using dp
if self.trainer.use_dp:
val_loss = torch.mean(val_loss)
val_loss_mean += val_loss
# reduce manually when using dp
val_acc = output['val_acc']
if self.trainer.use_dp:
val_acc = torch.mean(val_acc)
val_acc_mean += val_acc
i += 1
val_loss_mean /= i
val_acc_mean /= i
tqdm_dict = {'val_loss': val_loss_mean.item(), 'val_acc': val_acc_mean.item()}
return tqdm_dict
class LightningTestStepMixin:
@data_loader
def test_dataloader(self):
return self._dataloader(train=False)
def test_step(self, batch, batch_idx):
"""
Lightning calls this inside the validation loop
:param batch:
:return:
"""
x, y = batch
x = x.view(x.size(0), -1)
y_hat = self.forward(x)
loss_test = self.loss(y, y_hat)
# acc
labels_hat = torch.argmax(y_hat, dim=1)
test_acc = torch.sum(y == labels_hat).item() / (len(y) * 1.0)
test_acc = torch.tensor(test_acc)
if self.on_gpu:
test_acc = test_acc.cuda(loss_test.device.index)
# in DP mode (default) make sure if result is scalar, there's another dim in the beginning
if self.trainer.use_dp:
loss_test = loss_test.unsqueeze(0)
test_acc = test_acc.unsqueeze(0)
# alternate possible outputs to test
if batch_idx % 1 == 0:
output = OrderedDict({
'test_loss': loss_test,
'test_acc': test_acc,
})
return output
if batch_idx % 2 == 0:
return test_acc
if batch_idx % 3 == 0:
output = OrderedDict({
'test_loss': loss_test,
'test_acc': test_acc,
'test_dic': {'test_loss_a': loss_test}
})
return output
class LightningTestMixin(LightningTestStepMixin):
def test_end(self, outputs):
"""
Called at the end of validation to aggregate outputs
:param outputs: list of individual outputs of each validation step
:return:
"""
# if returned a scalar from test_step, outputs is a list of tensor scalars
# we return just the average in this case (if we want)
# return torch.stack(outputs).mean()
test_loss_mean = 0
test_acc_mean = 0
for output in outputs:
test_loss = output['test_loss']
# reduce manually when using dp
if self.trainer.use_dp:
test_loss = torch.mean(test_loss)
test_loss_mean += test_loss
# reduce manually when using dp
test_acc = output['test_acc']
if self.trainer.use_dp:
test_acc = torch.mean(test_acc)
test_acc_mean += test_acc
test_loss_mean /= len(outputs)
test_acc_mean /= len(outputs)
tqdm_dict = {'test_loss': test_loss_mean.item(), 'test_acc': test_acc_mean.item()}
return tqdm_dict
class LightningTestStepMultipleDataloadersMixin:
@data_loader
def test_dataloader(self):
return [self._dataloader(train=False), self._dataloader(train=False)]
def test_step(self, batch, batch_idx, dataloader_idx):
"""
Lightning calls this inside the validation loop
:param batch:
:return:
"""
x, y = batch
x = x.view(x.size(0), -1)
y_hat = self.forward(x)
loss_test = self.loss(y, y_hat)
# acc
labels_hat = torch.argmax(y_hat, dim=1)
test_acc = torch.sum(y == labels_hat).item() / (len(y) * 1.0)
test_acc = torch.tensor(test_acc)
if self.on_gpu:
test_acc = test_acc.cuda(loss_test.device.index)
# in DP mode (default) make sure if result is scalar, there's another dim in the beginning
if self.trainer.use_dp:
loss_test = loss_test.unsqueeze(0)
test_acc = test_acc.unsqueeze(0)
# alternate possible outputs to test
if batch_idx % 1 == 0:
output = OrderedDict({
'test_loss': loss_test,
'test_acc': test_acc,
})
return output
if batch_idx % 2 == 0:
return test_acc
if batch_idx % 3 == 0:
output = OrderedDict({
'test_loss': loss_test,
'test_acc': test_acc,
'test_dic': {'test_loss_a': loss_test}
})
return output
if batch_idx % 5 == 0:
output = OrderedDict({
f'test_loss_{dataloader_idx}': loss_test,
f'test_acc_{dataloader_idx}': test_acc,
})
return output
class LightningTestMultipleDataloadersMixin(LightningTestStepMultipleDataloadersMixin):
def test_end(self, outputs):
"""
Called at the end of validation to aggregate outputs
:param outputs: list of individual outputs of each validation step
:return:
"""
# if returned a scalar from test_step, outputs is a list of tensor scalars
# we return just the average in this case (if we want)
# return torch.stack(outputs).mean()
test_loss_mean = 0
test_acc_mean = 0
i = 0
for dl_output in outputs:
for output in dl_output:
test_loss = output['test_loss']
# reduce manually when using dp
if self.trainer.use_dp:
test_loss = torch.mean(test_loss)
test_loss_mean += test_loss
# reduce manually when using dp
test_acc = output['test_acc']
if self.trainer.use_dp:
test_acc = torch.mean(test_acc)
test_acc_mean += test_acc
i += 1
test_loss_mean /= i
test_acc_mean /= i
tqdm_dict = {'test_loss': test_loss_mean.item(), 'test_acc': test_acc_mean.item()}
return tqdm_dict
@@ -1,24 +1,22 @@
import os
from collections import OrderedDict
import torch
import torch.nn as nn
from torchvision.datasets import MNIST
import torchvision.transforms as transforms
import torch
import torch.nn.functional as F
from test_tube import HyperOptArgumentParser
from torch import optim
from torch.utils.data import DataLoader
from torch.utils.data.distributed import DistributedSampler
from torchvision.datasets import MNIST
from torchvision import transforms
from test_tube import HyperOptArgumentParser
from pytorch_lightning.root_module.root_module import LightningModule
from pytorch_lightning import data_loader
import pytorch_lightning as ptl
class LightningTestModelBase(LightningModule):
class LightningTestModel(LightningModule):
"""
Base LightningModule for testing. Implements only the required
interface
Sample model to show how to define a template
"""
def __init__(self, hparams, force_remove_distributed_sampler=False):
@@ -27,7 +25,7 @@ class LightningTestModelBase(LightningModule):
:param hparams:
"""
# init superclass
super(LightningTestModelBase, self).__init__()
super(LightningTestModel, self).__init__()
self.hparams = hparams
self.batch_size = hparams.batch_size
@@ -49,13 +47,11 @@ class LightningTestModelBase(LightningModule):
Layout model
:return:
"""
self.c_d1 = nn.Linear(in_features=self.hparams.in_features,
out_features=self.hparams.hidden_dim)
self.c_d1 = nn.Linear(in_features=self.hparams.in_features, out_features=self.hparams.hidden_dim)
self.c_d1_bn = nn.BatchNorm1d(self.hparams.hidden_dim)
self.c_d1_drop = nn.Dropout(self.hparams.drop_prob)
self.c_d2 = nn.Linear(in_features=self.hparams.hidden_dim,
out_features=self.hparams.out_features)
self.c_d2 = nn.Linear(in_features=self.hparams.hidden_dim, out_features=self.hparams.out_features)
# ---------------------
# TRAINING
@@ -81,14 +77,14 @@ class LightningTestModelBase(LightningModule):
nll = F.nll_loss(logits, labels)
return nll
def training_step(self, batch, batch_idx):
def training_step(self, data_batch, batch_i):
"""
Lightning calls this inside the training loop
:param batch:
:param data_batch:
:return:
"""
# forward pass
x, y = batch
x, y = data_batch
x = x.view(x.size(0), -1)
y_hat = self.forward(x)
@@ -104,12 +100,80 @@ class LightningTestModelBase(LightningModule):
if self.trainer.batch_nb % 1 == 0:
output = OrderedDict({
'loss': loss_val,
'progress': {'some_val': loss_val * loss_val}
'prog': {'some_val': loss_val * loss_val}
})
return output
if self.trainer.batch_nb % 2 == 0:
return loss_val
def validation_step(self, data_batch, batch_i):
"""
Lightning calls this inside the validation loop
:param data_batch:
:return:
"""
x, y = data_batch
x = x.view(x.size(0), -1)
y_hat = self.forward(x)
loss_val = self.loss(y, y_hat)
# acc
labels_hat = torch.argmax(y_hat, dim=1)
val_acc = torch.sum(y == labels_hat).item() / (len(y) * 1.0)
val_acc = torch.tensor(val_acc)
if self.on_gpu:
val_acc = val_acc.cuda(loss_val.device.index)
# in DP mode (default) make sure if result is scalar, there's another dim in the beginning
if self.trainer.use_dp:
loss_val = loss_val.unsqueeze(0)
val_acc = val_acc.unsqueeze(0)
# alternate possible outputs to test
if self.trainer.batch_nb % 1 == 0:
output = OrderedDict({
'val_loss': loss_val,
'val_acc': val_acc,
})
return output
if self.trainer.batch_nb % 2 == 0:
return val_acc
if self.trainer.batch_nb % 3 == 0:
output = OrderedDict({
'val_loss': loss_val,
'val_acc': val_acc,
'test_dic': {'val_loss_a': loss_val}
})
return output
def validation_end(self, outputs):
"""
Called at the end of validation to aggregate outputs
:param outputs: list of individual outputs of each validation step
:return:
"""
# if returned a scalar from validation_step, outputs is a list of tensor scalars
# we return just the average in this case (if we want)
# return torch.stack(outputs).mean()
val_loss_mean = 0
val_acc_mean = 0
for output in outputs:
val_loss_mean += output['val_loss']
val_acc_mean += output['val_acc']
val_loss_mean /= len(outputs)
val_acc_mean /= len(outputs)
tqdm_dic = {'val_loss': val_loss_mean.item(), 'val_acc': val_acc_mean.item()}
return tqdm_dic
def on_tng_metrics(self, logs):
logs['some_tensor_to_test'] = torch.rand(1)
# ---------------------
# TRAINING SETUP
# ---------------------
@@ -122,24 +186,22 @@ class LightningTestModelBase(LightningModule):
optimizer = optim.Adam(self.parameters(), lr=self.hparams.learning_rate)
# test returning only 1 list instead of 2
return optimizer
return [optimizer]
def _dataloader(self, train):
def __dataloader(self, train):
# init data generators
transform = transforms.Compose([transforms.ToTensor(),
transforms.Normalize((0.5,), (1.0,))])
dataset = MNIST(root=self.hparams.data_root, train=train,
transform=transform, download=True)
transform = transforms.Compose([transforms.ToTensor(), transforms.Normalize((0.5,), (1.0,))])
dataset = MNIST(root=self.hparams.data_root, train=train, transform=transform, download=True)
# when using multi-node we need to add the datasampler
train_sampler = None
batch_size = self.hparams.batch_size
try:
if self.use_ddp and not self.force_remove_distributed_sampler:
if self.on_gpu and not self.force_remove_distributed_sampler:
train_sampler = DistributedSampler(dataset, rank=self.trainer.proc_rank)
batch_size = batch_size // self.trainer.world_size # scale batch size
except Exception:
except Exception as e:
pass
should_shuffle = train_sampler is None
@@ -152,12 +214,20 @@ class LightningTestModelBase(LightningModule):
return loader
@data_loader
def train_dataloader(self):
return self._dataloader(train=True)
@ptl.data_loader
def tng_dataloader(self):
return self.__dataloader(train=True)
@ptl.data_loader
def val_dataloader(self):
return self.__dataloader(train=False)
@ptl.data_loader
def test_dataloader(self):
return self.__dataloader(train=False)
@staticmethod
def add_model_specific_args(parent_parser, root_dir): # pragma: no cover
def add_model_specific_args(parent_parser, root_dir):
"""
Parameters you define here will be available to your model through self.hparams
:param parent_parser:
@@ -167,28 +237,23 @@ class LightningTestModelBase(LightningModule):
parser = HyperOptArgumentParser(strategy=parent_parser.strategy, parents=[parent_parser])
# param overwrites
# parser.set_defaults(gradient_clip_val=5.0)
# parser.set_defaults(gradient_clip=5.0)
# network params
parser.opt_list('--drop_prob', default=0.2, options=[0.2, 0.5], type=float, tunable=False)
parser.add_argument('--in_features', default=28 * 28, type=int)
parser.add_argument('--in_features', default=28*28, type=int)
parser.add_argument('--out_features', default=10, type=int)
# use 500 for CPU, 50000 for GPU to see speed difference
parser.add_argument('--hidden_dim', default=50000, type=int)
parser.add_argument('--hidden_dim', default=50000, type=int) # use 500 for CPU, 50000 for GPU to see speed difference
# data
parser.add_argument('--data_root', default=os.path.join(root_dir, 'mnist'), type=str)
# training params (opt)
parser.opt_list('--learning_rate', default=0.001 * 8, type=float,
options=[0.0001, 0.0005, 0.001, 0.005],
parser.opt_list('--learning_rate', default=0.001*8, type=float, options=[0.0001, 0.0005, 0.001, 0.005],
tunable=False)
parser.opt_list('--optimizer_name', default='adam', type=str,
options=['adam'], tunable=False)
parser.opt_list('--optimizer_name', default='adam', type=str, options=['adam'], tunable=False)
# if using 2 nodes with 4 gpus each the batch size here
# (256) will be 256 / (2*8) = 16 per gpu
parser.opt_list('--batch_size', default=256 * 8, type=int,
options=[32, 64, 128, 256], tunable=False,
help='batch size will be divided over all gpus being used across all nodes')
# if using 2 nodes with 4 gpus each the batch size here (256) will be 256 / (2*8) = 16 per gpu
parser.opt_list('--batch_size', default=256*8, type=int, options=[32, 64, 128, 256], tunable=False,
help='batch size will be divided over all the gpus being used across all nodes')
return parser
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@@ -1,325 +0,0 @@
import os
import re
import signal
import pdb
from subprocess import call
import torch
from pytorch_lightning.pt_overrides.override_data_parallel import (
LightningDistributedDataParallel, LightningDataParallel)
class TrainerIO(object):
def __get_model(self):
is_dp_module = isinstance(self.model, (LightningDistributedDataParallel,
LightningDataParallel))
model = self.model.module if is_dp_module else self.model
return model
# --------------------
# CHECK-POINTING
# --------------------
def restore_weights(self, model):
"""
To restore weights we have two cases.
First, if we use the same experiment version, then restore the latest ckpt.
AFTER that, if we find weights from hpc checkpoint, then restore that.
:param model:
:return:
"""
# restore weights if same exp version
self.restore_state_if_checkpoint_exists(model)
# if script called from hpc resubmit, load weights
self.restore_hpc_weights_if_needed(model)
def restore_state_if_checkpoint_exists(self, model):
# do nothing if there's not dir or callback
no_ckpt_callback = self.checkpoint_callback is None
if no_ckpt_callback or not os.path.exists(self.checkpoint_callback.filepath):
return
# restore trainer state and model if there is a weight for this experiment
last_epoch = -1
last_ckpt_name = None
# find last epoch
checkpoints = os.listdir(self.checkpoint_callback.filepath)
for name in checkpoints:
# ignore hpc ckpts
if 'hpc_' in name:
continue
if '.ckpt' in name:
epoch = name.split('epoch_')[1]
epoch = int(re.sub('[^0-9]', '', epoch))
if epoch > last_epoch:
last_epoch = epoch
last_ckpt_name = name
# restore last checkpoint
if last_ckpt_name is not None:
last_ckpt_path = os.path.join(self.checkpoint_callback.filepath, last_ckpt_name)
self.restore(last_ckpt_path, self.on_gpu)
print(f'model and trainer restored from checkpoint: {last_ckpt_path}')
# --------------------
# HPC SIGNAL HANDLING
# --------------------
def register_slurm_signal_handlers(self):
# see if we're using slurm (not interactive)
on_slurm = False
try:
job_name = os.environ['SLURM_JOB_NAME']
if job_name != 'bash':
on_slurm = True
except Exception as e:
pass
if on_slurm:
print('set slurm handle signals')
signal.signal(signal.SIGUSR1, self.sig_handler)
signal.signal(signal.SIGTERM, self.term_handler)
def sig_handler(self, signum, frame):
if self.proc_rank == 0:
# save weights
print('handling SIGUSR1')
self.hpc_save(self.weights_save_path, self.experiment)
# find job id
job_id = os.environ['SLURM_JOB_ID']
cmd = 'scontrol requeue {}'.format(job_id)
# requeue job
print('\nrequeing job {}...'.format(job_id))
result = call(cmd, shell=True)
# print result text
if result == 0:
print('requeued exp ', job_id)
else:
print('requeue failed...')
# close experiment to avoid issues
self.experiment.close()
def term_handler(self, signum, frame):
# save
print("bypassing sigterm")
# --------------------
# MODEL SAVE CHECKPOINT
# --------------------
def save_checkpoint(self, filepath):
checkpoint = self.dump_checkpoint()
# do the actual save
torch.save(checkpoint, filepath)
def restore(self, checkpoint_path, on_gpu):
# if on_gpu:
# checkpoint = torch.load(checkpoint_path)
# else:
# load on CPU first
checkpoint = torch.load(checkpoint_path, map_location=lambda storage, loc: storage)
# load model state
model = self.__get_model()
# load the state_dict on the model automatically
model.load_state_dict(checkpoint['state_dict'])
if on_gpu:
model.cuda(self.root_gpu)
# load training state (affects trainer only)
self.restore_training_state(checkpoint)
def dump_checkpoint(self):
checkpoint = {
'epoch': self.current_epoch,
'global_step': self.global_step
}
if self.checkpoint_callback is not None:
checkpoint['checkpoint_callback_best'] = self.checkpoint_callback.best
if self.early_stop_callback is not None:
checkpoint['early_stop_callback_wait'] = self.early_stop_callback.wait
checkpoint['early_stop_callback_patience'] = self.early_stop_callback.patience
# save optimizers
optimizer_states = []
for i, optimizer in enumerate(self.optimizers):
optimizer_states.append(optimizer.state_dict())
checkpoint['optimizer_states'] = optimizer_states
# save lr schedulers
lr_schedulers = []
for i, scheduler in enumerate(self.lr_schedulers):
lr_schedulers.append(scheduler.state_dict())
checkpoint['lr_schedulers'] = lr_schedulers
# add the state_dict from the model
model = self.__get_model()
checkpoint['state_dict'] = model.state_dict()
# give the model a chance to add a few things
model.on_save_checkpoint(checkpoint)
return checkpoint
# --------------------
# HPC IO
# --------------------
def restore_hpc_weights_if_needed(self, model):
"""
If there is a set of hpc weights, use as signal to restore model
:param model:
:return:
"""
# look for hpc weights
folderpath = self.weights_save_path
if os.path.exists(folderpath):
files = os.listdir(folderpath)
hpc_weight_paths = [x for x in files if 'hpc_ckpt' in x]
# if hpc weights exist restore model
if len(hpc_weight_paths) > 0:
self.hpc_load(folderpath, self.on_gpu)
def restore_training_state(self, checkpoint):
"""
Restore trainer state.
Model will get its change to update
:param checkpoint:
:return:
"""
if self.checkpoint_callback is not None:
self.checkpoint_callback.best = checkpoint['checkpoint_callback_best']
if self.early_stop_callback is not None:
self.early_stop_callback.wait = checkpoint['early_stop_callback_wait']
self.early_stop_callback.patience = checkpoint['early_stop_callback_patience']
self.global_step = checkpoint['global_step']
self.current_epoch = checkpoint['epoch']
# restore the optimizers
optimizer_states = checkpoint['optimizer_states']
for optimizer, opt_state in zip(self.optimizers, optimizer_states):
optimizer.load_state_dict(opt_state)
# move optimizer to GPU 1 weight at a time
# avoids OOM
if self.root_gpu is not None:
for state in optimizer.state.values():
for k, v in state.items():
if isinstance(v, torch.Tensor):
state[k] = v.cuda(self.root_gpu)
# restore the lr schedulers
lr_schedulers = checkpoint['lr_schedulers']
for scheduler, lrs_state in zip(self.lr_schedulers, lr_schedulers):
scheduler.load_state_dict(lrs_state)
# ----------------------------------
# PRIVATE OPS
# ----------------------------------
def hpc_save(self, folderpath, experiment):
# make sure the checkpoint folder exists
os.makedirs(folderpath, exist_ok=True)
# save exp to make sure we get all the metrics
experiment.save()
ckpt_number = self.max_ckpt_in_folder(folderpath) + 1
if not os.path.exists(folderpath):
os.makedirs(folderpath, exist_ok=True)
filepath = '{}/hpc_ckpt_{}.ckpt'.format(folderpath, ckpt_number)
# give model a chance to do something on hpc_save
model = self.__get_model()
checkpoint = self.dump_checkpoint()
model.on_hpc_save(checkpoint)
# do the actual save
torch.save(checkpoint, filepath)
return filepath
def hpc_load(self, folderpath, on_gpu):
filepath = '{}/hpc_ckpt_{}.ckpt'.format(folderpath, self.max_ckpt_in_folder(folderpath))
# load on CPU first
checkpoint = torch.load(filepath, map_location=lambda storage, loc: storage)
# load model state
model = self.__get_model()
# load the state_dict on the model automatically
model.load_state_dict(checkpoint['state_dict'])
if self.root_gpu is not None:
model.cuda(self.root_gpu)
# load training state (affects trainer only)
self.restore_training_state(checkpoint)
# call model hook
model.on_hpc_load(checkpoint)
print(f'restored hpc model from: {filepath}')
def max_ckpt_in_folder(self, path, name_key='ckpt_'):
files = os.listdir(path)
files = [x for x in files if name_key in x]
if len(files) == 0:
return 0
ckpt_vs = []
for name in files:
name = name.split(name_key)[-1]
name = re.sub('[^0-9]', '', name)
ckpt_vs.append(int(name))
return max(ckpt_vs)
def load_hparams_from_tags_csv(tags_csv):
from argparse import Namespace
import pandas as pd
tags_df = pd.read_csv(tags_csv)
dic = tags_df.to_dict(orient='records')
ns_dict = {row['key']: convert(row['value']) for row in dic}
ns = Namespace(**ns_dict)
return ns
def convert(val):
constructors = [int, float, str]
if type(val) is str:
if val.lower() == 'true':
return True
if val.lower() == 'false':
return False
for c in constructors:
try:
return c(val)
except ValueError:
pass
return val
@@ -1,48 +1,31 @@
"""
List of default args which mught be useful for all the available flags
Might need to update with the new flags
"""
import os
import pdb
def add_default_args(parser, root_dir, rand_seed=None, possible_model_names=None):
# training, test, val check intervals
parser.add_argument('--eval_test_set', dest='eval_test_set', action='store_true',
help='true = run test set also')
parser.add_argument('--check_val_every_n_epoch', default=1, type=int,
help='check val every n epochs')
# tng, test, val check intervals
parser.add_argument('--eval_test_set', dest='eval_test_set', action='store_true', help='true = run test set also')
parser.add_argument('--check_val_every_n_epoch', default=1, type=int, help='check val every n epochs')
parser.opt_list('--accumulate_grad_batches', default=1, type=int, tunable=False,
help='accumulates gradients k times before applying update.'
' Simulates huge batch size')
help='accumulates gradients k times before applying update. Simulates huge batch size')
parser.add_argument('--max_nb_epochs', default=200, type=int, help='cap epochs')
parser.add_argument('--min_nb_epochs', default=2, type=int, help='min epochs')
parser.add_argument('--train_percent_check', default=1.0, type=float,
help='how much of training set to check')
parser.add_argument('--val_percent_check', default=1.0, type=float,
help='how much of val set to check')
parser.add_argument('--test_percent_check', default=1.0, type=float,
help='how much of test set to check')
parser.add_argument('--train_percent_check', default=1.0, type=float, help='how much of tng set to check')
parser.add_argument('--val_percent_check', default=1.0, type=float, help='how much of val set to check')
parser.add_argument('--test_percent_check', default=1.0, type=float, help='how much of test set to check')
parser.add_argument('--val_check_interval', default=0.95, type=float,
help='how much within 1 epoch to check val')
parser.add_argument('--log_save_interval', default=100, type=int,
help='how many batches between log saves')
parser.add_argument('--row_log_interval', default=100, type=int,
help='add log every k batches')
parser.add_argument('--val_check_interval', default=0.95, type=float, help='how much within 1 epoch to check val')
parser.add_argument('--log_save_interval', default=100, type=int, help='how many batches between log saves')
parser.add_argument('--add_log_row_interval', default=100, type=int, help='add log every k batches')
# early stopping
parser.add_argument('--disable_early_stop', dest='enable_early_stop', action='store_false')
parser.add_argument('--early_stop_metric', default='val_acc', type=str)
parser.add_argument('--early_stop_mode', default='min', type=str)
parser.add_argument('--early_stop_patience', default=3, type=int,
help='number of epochs until stop')
parser.add_argument('--early_stop_patience', default=3, type=int, help='number of epochs until stop')
# gradient handling
parser.add_argument('--gradient_clip_val', default=-1, type=int)
parser.add_argument('--track_grad_norm', default=-1, type=int,
help='if > 0, will track this grad norm')
parser.add_argument('--gradient_clip', default=-1, type=int)
parser.add_argument('--track_grad_norm', default=-1, type=int, help='if > 0, will track this grad norm')
# model saving
parser.add_argument('--model_save_path', default=root_dir + '/model_weights')
@@ -58,8 +41,7 @@ def add_default_args(parser, root_dir, rand_seed=None, possible_model_names=None
# test_tube settings
parser.add_argument('-en', '--tt_name', default='pt_test')
parser.add_argument('-td', '--tt_description', default='pytorch lightning test')
parser.add_argument('--tt_save_path', default=os.path.join(root_dir, 'test_tube_logs'),
help='logging dir')
parser.add_argument('--tt_save_path', default=root_dir + '/test_tube_logs', help='logging dir')
parser.add_argument('--enable_single_run', dest='single_run', action='store_true')
parser.add_argument('--nb_hopt_trials', default=1, type=int)
parser.add_argument('--log_stdout', dest='log_stdout', action='store_true')
@@ -70,30 +52,25 @@ def add_default_args(parser, root_dir, rand_seed=None, possible_model_names=None
parser.add_argument('--default_tensor_type', default='torch.cuda.FloatTensor', type=str)
parser.add_argument('--use_amp', dest='use_amp', action='store_true')
parser.add_argument('--check_grad_nans', dest='check_grad_nans', action='store_true')
parser.add_argument('--amp_level', default='O2', type=str)
parser.add_argument('--amp_level', default='O2',type=str)
# run on hpc
parser.add_argument('--on_cluster', dest='on_cluster', action='store_true')
# FAST training
# use these settings to make sure network has no bugs without running a full dataset
parser.add_argument('--fast_dev_run', dest='fast_dev_run', default=False, action='store_true',
help='runs validation after 1 training step')
parser.add_argument('--enable_tqdm', dest='enable_tqdm', default=False, action='store_true',
help='false removes the progress bar')
parser.add_argument('--overfit', default=-1, type=float,
help='% of dataset to use with this option. float, or -1 for none')
parser.add_argument('--fast_dev_run', dest='fast_dev_run', default=False, action='store_true', help='runs validation after 1 tng step')
parser.add_argument('--enable_tqdm', dest='enable_tqdm', default=False, action='store_true', help='false removes the prog bar')
parser.add_argument('--overfit', default=-1, type=float, help='% of dataset to use with this option. float, or -1 for none')
# debug args
if rand_seed is not None:
parser.add_argument('--random_seed', default=rand_seed, type=int)
parser.add_argument('--interactive', dest='interactive', action='store_true',
help='runs on gpu without cluster')
parser.add_argument('--debug', dest='debug', action='store_true',
help='enables/disables test tube')
parser.add_argument('--local', dest='local', action='store_true',
help='enables local training')
parser.add_argument('--interactive', dest='interactive', action='store_true', help='runs on gpu without cluster')
parser.add_argument('--debug', dest='debug', action='store_true', help='enables/disables test tube')
parser.add_argument('--local', dest='local', action='store_true', help='enables local tng')
# optimizer
parser.add_argument('--lr_scheduler_milestones', default=None, type=str)
parser.add_argument('--lr_scheduler_milestones', default=None, type=str)
@@ -1,2 +1,5 @@
import pdb
import sys
class MisconfigurationException(Exception):
pass
pass
+4 -2
View File
@@ -1,7 +1,9 @@
coverage==4.5.3
mkdocs==1.0.4
pytest==5.0.1
scikit-learn==0.20.2
tqdm==4.32.1
twine==1.13.0
numpy==1.16.4
torch>=1.1.0
torchvision>=0.3.0
pandas
torchvision==0.3.0
-4
View File
@@ -31,8 +31,6 @@ exclude_lines =
print(traceback.print_exc())
return *
raise Exception
raise *
except *
warnings
print
raise RuntimeError
@@ -44,8 +42,6 @@ omit =
pytorch_lightning/callbacks/pt_callbacks.py
tests/test_models.py
pytorch_lightning/testing_models/lm_test_module.py
pytorch_lightning/utilities/arg_parse.py
examples/templates
[flake8]
ignore = E731,W504,F401,F841
+16 -45
View File
@@ -1,58 +1,29 @@
#!/usr/bin/env python
# Always prefer setuptools over distutils
from setuptools import setup, find_packages
# https://packaging.python.org/guides/single-sourcing-package-version/
# http://blog.ionelmc.ro/2014/05/25/python-packaging/
# https://packaging.python.org/discussions/install-requires-vs-requirements /
# keep the meta-data here for simplicity in reading this file... it's not obvious
# what happens and to non-engineers they won't know to look in init ...
# the goal of the project is simplicity for researchers, don't want to add too much
# engineer specific practices
setup(
name='pytorch-lightning',
version='0.5.0',
description='The Keras for ML researchers using PyTorch',
author='William Falcon',
author_email='waf2107@columbia.edu',
url='https://github.com/williamFalcon/pytorch-lightning',
download_url='https://github.com/williamFalcon/pytorch-lightning',
license='Apache-2',
name="pytorch-lightning",
version='0.3.6.6',
description="The Keras for ML researchers using PyTorch",
author="William Falcon",
author_email="waf2107@columbia.edu",
url="https://github.com/williamFalcon/pytorch-lightning",
download_url="https://github.com/williamFalcon/pytorch-lightning",
license="MIT",
keywords=["deep learning", "pytorch", "AI"],
python_requires=">=3.5",
install_requires=[
"torch>=1.1.0",
"tqdm",
"test-tube>=0.6.7.4",
],
packages=find_packages(),
long_description=open('README.md', encoding='utf-8').read(),
long_description=open("README.md", encoding="utf-8").read(),
long_description_content_type='text/markdown',
include_package_data=True,
zip_safe=False,
keywords=['deep learning', 'pytorch', 'AI'],
python_requires='>=3.6',
install_requires=[
'torch==1.2.0',
'tqdm>=4.35.0',
'test-tube>=0.6.9',
'pandas>=0.20.3',
],
classifiers=[
'Environment :: Console',
'Natural Language :: English',
# How mature is this project? Common values are
# 3 - Alpha, 4 - Beta, 5 - Production/Stable
'Development Status :: 4 - Beta',
# Indicate who your project is intended for
'Intended Audience :: Developers',
'Topic :: Scientific/Engineering :: Artificial Intelligence',
'Topic :: Scientific/Engineering :: Image Recognition',
'Topic :: Scientific/Engineering :: Information Analysis',
# Pick your license as you wish
'License :: OSI Approved :: BSD License',
'Operating System :: OS Independent',
# Specify the Python versions you support here. In particular, ensure
# that you indicate whether you support Python 2, Python 3 or both.
'Programming Language :: Python :: 3',
'Programming Language :: Python :: 3.5',
'Programming Language :: Python :: 3.6',
'Programming Language :: Python :: 3.7',
],
)
+4 -9
View File
@@ -1,4 +1,4 @@
# PyTorch-Lightning Tests
# Pytorch-Lightning Tests
## Running tests
The automatic travis tests ONLY run CPU-based tests. Although these cover most of the use cases,
@@ -17,7 +17,7 @@ pip install -e .
pip install -r requirements.txt
# run tests
py.test -v
py.test
```
To test models that require GPU make sure to run the above command on a GPU machine.
@@ -43,21 +43,16 @@ For each set up it also tests:
5. simulated load from HPC signal.
## Running Coverage
Make sure to run coverage on a GPU machine with at least 2 GPUs and NVIDIA apex installed.
```bash
cd pytorch-lightning
# generate coverage
pip install coverage
coverage run --source pytorch_lightning -m py.test pytorch_lightning tests examples -v --doctest-modules
coverage run tests/test_models.py
# print coverage stats
coverage report -m
# exporting resulys
coverage xml
codecov -t 17327163-8cca-4a5d-86c8-ca5f2ef700bc -v
coverage report -m
```
+37 -154
View File
@@ -1,22 +1,24 @@
import pytest
from pytorch_lightning import Trainer
from examples import LightningTemplateModel
from pytorch_lightning.testing import LightningTestModel
from pytorch_lightning.examples.new_project_templates.lightning_module_template import LightningTemplateModel
from argparse import Namespace
from test_tube import Experiment
from pytorch_lightning.callbacks import ModelCheckpoint
import numpy as np
import warnings
import torch
import os
import shutil
import pdb
import pytorch_lightning as pl
import pytorch_lightning as ptl
import torch
from torch.nn import functional as F
from torch.utils.data import DataLoader
from torchvision.datasets import MNIST
import numpy as np
import pdb
class CoolModel(pl.LightningModule):
class CoolModel(ptl.LightningModule):
def __init(self):
super(CoolModel, self).__init__()
@@ -32,7 +34,7 @@ class CoolModel(pl.LightningModule):
def training_step(self, batch, batch_nb):
x, y = batch
y_hat = self.forward(x)
return {'training_loss': self.my_loss(y_hat, y)}
return {'tng_loss': self.my_loss(y_hat, y)}
def validation_step(self, batch, batch_nb):
x, y = batch
@@ -46,15 +48,15 @@ class CoolModel(pl.LightningModule):
def configure_optimizers(self):
return [torch.optim.Adam(self.parameters(), lr=0.02)]
@pl.data_loader
def train_dataloader(self):
@ptl.data_loader
def tng_dataloader(self):
return DataLoader(MNIST('path/to/save', train=True), batch_size=32)
@pl.data_loader
@ptl.data_loader
def val_dataloader(self):
return DataLoader(MNIST('path/to/save', train=False), batch_size=32)
@pl.data_loader
@ptl.data_loader
def test_dataloader(self):
return DataLoader(MNIST('path/to/save', train=False), batch_size=32)
@@ -64,8 +66,8 @@ def get_model():
root_dir = os.path.dirname(os.path.realpath(__file__))
hparams = Namespace(**{'drop_prob': 0.2,
'batch_size': 32,
'in_features': 28 * 28,
'learning_rate': 0.001 * 8,
'in_features': 28*28,
'learning_rate': 0.001*8,
'optimizer_name': 'adam',
'data_root': os.path.join(root_dir, 'mnist'),
'out_features': 10,
@@ -75,11 +77,10 @@ def get_model():
return model, hparams
def get_exp(debug=True, version=None):
def get_exp(debug=True):
# set up exp object without actually saving logs
root_dir = os.path.dirname(os.path.realpath(__file__))
save_dir = os.path.join(root_dir, 'save_dir')
exp = Experiment(debug=debug, save_dir=save_dir, name='tests_tt_dir', version=version)
exp = Experiment(debug=debug, save_dir=root_dir, name='tests_tt_dir')
return exp
@@ -102,7 +103,7 @@ def clear_save_dir():
shutil.rmtree(save_dir)
def load_model(exp, save_dir, on_gpu, map_location=None, module_class=LightningTemplateModel):
def load_model(exp, save_dir):
# load trained model
tags_path = exp.get_data_path(exp.name, exp.version)
@@ -111,10 +112,7 @@ def load_model(exp, save_dir, on_gpu, map_location=None, module_class=LightningT
checkpoints = [x for x in os.listdir(save_dir) if '.ckpt' in x]
weights_dir = os.path.join(save_dir, checkpoints[0])
trained_model = module_class.load_from_metrics(weights_path=weights_dir,
tags_csv=tags_path,
on_gpu=on_gpu,
map_location=map_location)
trained_model = LightningTemplateModel.load_from_metrics(weights_path=weights_dir, tags_csv=tags_path, on_gpu=True)
assert trained_model is not None, 'loading model failed'
@@ -136,160 +134,45 @@ def run_prediction(dataloader, trained_model):
val_acc = torch.sum(y == labels_hat).item() / (len(y) * 1.0)
val_acc = torch.tensor(val_acc)
val_acc = val_acc.item()
assert val_acc > 0.70, 'this model is expected to get > 0.7 in test set (it got %f)' % val_acc
print(val_acc)
assert val_acc > 0.70, f'this model is expected to get > 0.7 in test set (it got {val_acc})'
# ------------------------------------------------------------------------
def run_gpu_model_test(trainer_options, model, hparams, on_gpu=True):
def main():
save_dir = init_save_dir()
# exp file to get meta
exp = get_exp(False)
exp.argparse(hparams)
exp.save()
# exp file to get weights
checkpoint = ModelCheckpoint(save_dir)
# add these to the trainer options
trainer_options['checkpoint_callback'] = checkpoint
trainer_options['experiment'] = exp
trainer = Trainer(
experiment=exp,
checkpoint_callback=checkpoint,
progress_bar=True,
max_nb_epochs=1,
gpus=[0, 1],
distributed_backend='dp',
)
model = CoolModel()
# fit model
trainer = Trainer(**trainer_options)
result = trainer.fit(model)
# correct result and ok accuracy
assert result == 1, 'amp + ddp model failed to complete'
# test model loading
pretrained_model = load_model(exp, save_dir, on_gpu)
pretrained_model = load_model(exp, save_dir)
# test new model accuracy
# test model preds
run_prediction(model.test_dataloader, pretrained_model)
if trainer.use_ddp:
# on hpc this would work fine... but need to hack it for the purpose of the test
trainer.model = pretrained_model
trainer.optimizers, trainer.lr_schedulers = pretrained_model.configure_optimizers()
# test HPC loading / saving
trainer.hpc_save(save_dir, exp)
trainer.hpc_load(save_dir, on_gpu=on_gpu)
clear_save_dir()
def assert_ok_val_acc(trainer):
# this model should get 0.80+ acc
acc = trainer.training_tqdm_dict['val_acc']
assert acc > 0.50, f'model failed to get expected 0.50 validation accuracy. Got: {acc}'
def assert_ok_test_acc(trainer):
# this model should get 0.80+ acc
acc = trainer.training_tqdm_dict['test_acc']
assert acc > 0.50, f'model failed to get expected 0.50 validation accuracy. Got: {acc}'
def get_hparams(continue_training=False, hpc_exp_number=0):
root_dir = os.path.dirname(os.path.realpath(__file__))
args = {
'drop_prob': 0.2,
'batch_size': 32,
'in_features': 28 * 28,
'learning_rate': 0.001 * 8,
'optimizer_name': 'adam',
'data_root': os.path.join(root_dir, 'mnist'),
'out_features': 10,
'hidden_dim': 1000}
if continue_training:
args['test_tube_do_checkpoint_load'] = True
args['hpc_exp_number'] = hpc_exp_number
hparams = Namespace(**args)
return hparams
def main():
"""
Make sure DDP + AMP continue training correctly
:return:
"""
hparams = get_hparams()
model = LightningTestModel(hparams)
trainer_options = dict(
show_progress_bar=True,
max_nb_epochs=4,
gpus=2,
distributed_backend='dp',
)
save_dir = init_save_dir()
# exp file to get meta
exp = get_exp(False)
exp.argparse(hparams)
exp.save()
# exp file to get weights
checkpoint = ModelCheckpoint(save_dir)
# add these to the trainer options
trainer_options['experiment'] = exp
trainer_options['checkpoint_callback'] = checkpoint
# fit model
trainer = Trainer(**trainer_options)
trainer.is_slurm_managing_tasks = True
result = trainer.fit(model)
# track epoch before saving
real_global_epoch = trainer.current_epoch
# correct result and ok accuracy
assert result == 1, 'amp + dp model failed to complete'
# ---------------------------
# HPC LOAD/SAVE
# ---------------------------
# save
trainer.hpc_save(save_dir, exp)
# init new trainer
new_exp = get_exp(False, version=exp.version)
trainer_options['experiment'] = new_exp
trainer_options['checkpoint_callback'] = ModelCheckpoint(save_dir)
trainer_options['train_percent_check'] = 0.2
trainer_options['val_percent_check'] = 0.2
trainer_options['max_nb_epochs'] = 1
new_trainer = Trainer(**trainer_options)
# set the epoch start hook so we can predict before the model does the full training
def assert_good_acc():
assert trainer.current_epoch == real_global_epoch and trainer.current_epoch > 0
# if model and state loaded correctly, predictions will be good even though we
# haven't trained with the new loaded model
dp_model = new_trainer.model
dp_model.eval()
_ = [run_prediction(dataloader, dp_model, dp=True) for dataloader in trainer.val_dataloader]
# new model
model = LightningTestModel(hparams)
model.on_sanity_check_start = assert_good_acc
# fit new model which should load hpc weights
new_trainer.fit(model)
# test freeze on gpu
model.freeze()
model.unfreeze()
clear_save_dir()
-8
View File
@@ -1,8 +0,0 @@
tox
coverage
codecov
pytest>=3.0.5
pytest-cov
flake8
check-manifest
test_tube
+152 -940
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File diff suppressed because it is too large Load Diff
-47
View File
@@ -1,47 +0,0 @@
# this file is *not* meant to cover or endorse the use of tox or pytest or testing in general,
#
# It's meant to show the use of:
#
# - check-manifest
# confirm items checked into vcs are in your segdist
# - python setup.py check
# confirm required package meta-data in setup.py
# - readme_renderer (when using a ReStructuredText README)
# confirms your long_description will render correctly on PyPI.
#
# and also to help confirm pull requests to this project.
[tox]
envlist = py{35,36,37}
[pytest]
log_cli = 0
log_cli_level = CRITICAL
log_cli_format = %(message)s
log_file = pytest.log
log_file_level = DEBUG
log_file_format = %(asctime)s [%(levelname)8s] %(message)s (%(filename)s:%(lineno)s)
log_file_date_format=%Y-%m-%d %H:%M:%S
[testenv]
basepython =
py35: python3.5
py36: python3.6
py37: python3.7
deps =
-r requirements.txt
-r ./tests/requirements.txt
commands =
check-manifest --ignore tox.ini
python setup.py check -m -s
flake8 .
coverage run --source pytorch_lightning -m py.test pytorch_lightning tests examples -v --doctest-modules
[flake8]
exclude = .tox,*.egg,build,temp,examples/*
select = E,W,F
doctests = True
verbose = 2
# https://pep8.readthedocs.io/en/latest/intro.html#error-codes
format = pylint
max-line-length = 100
+3
View File
@@ -11,7 +11,10 @@ rm -rf ./dist/*
python3 setup.py sdist
twine upload dist/*
# to update docs
# cd to root dir
# mkdocs gh-deploy