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switch from submodule to cloning arrow, travis fixes & Robert's comments

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This commit is contained in:
Philipp Moritz
2016-11-19 17:38:36 -08:00
parent 05e0226047
commit d64f69f215
17 changed files with 25 additions and 324 deletions
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.travis.yml
+6
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@@ -52,6 +52,10 @@ matrix:
install:
- ./install-dependencies.sh
- ./build.sh
- cd numbuf
- sudo python setup.py install
- cd ..
- cd src/common/lib/python
- sudo python setup.py install
@@ -62,6 +66,8 @@ install:
- cd ../..
script:
- python numbuf/python/test/runtest.py
- python src/common/test/test.py
- python src/plasma/test/test.py
- python src/photon/test/test.py
doc/install-on-macosx.md
+2 -2
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@@ -1,6 +1,6 @@
# Installation on Mac OS X
Ray should work with Python 2 and Python 3. We have tested Ray on OS X 10.11.
Ray should work with Python 2. We have tested Ray on OS X 10.11.
## Dependencies
@@ -14,7 +14,7 @@ sudo easy_install pip # If you're using Anaconda, then this is unnecessary.
pip install numpy funcsigs colorama psutil redis --ignore-installed six
pip install --upgrade git+git://github.com/cloudpipe/cloudpickle.git@0d225a4695f1f65ae1cbb2e0bbc145e10167cce4 # We use the latest version of cloudpickle because it can serialize named tuples.
pip install --upgrade --verbose git+git://github.com/ray-project/numbuf.git@488f881d708bc54e86ed375ee97aa94540808fa1
pip install --upgrade --verbose "git+git://github.com/ray-project/ray.git#egg=ray&subdirectory=numbuf"
```
# Install Ray
doc/install-on-ubuntu.md
+2 -2
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@@ -1,6 +1,6 @@
# Installation on Ubuntu
Ray should work with Python 2 and Python 3. We have tested Ray on Ubuntu 14.04
Ray should work with Python 2. We have tested Ray on Ubuntu 14.04
and Ubuntu 16.04
## Dependencies
@@ -14,7 +14,7 @@ sudo apt-get install -y cmake build-essential autoconf curl libtool python-dev p
pip install numpy funcsigs colorama psutil redis
pip install --upgrade git+git://github.com/cloudpipe/cloudpickle.git@0d225a4695f1f65ae1cbb2e0bbc145e10167cce4 # We use the latest version of cloudpickle because it can serialize named tuples.
pip install --upgrade --verbose git+git://github.com/ray-project/numbuf.git@488f881d708bc54e86ed375ee97aa94540808fa1
pip install --upgrade --verbose "git+git://github.com/ray-project/ray.git#egg=ray&subdirectory=numbuf"
```
# Install Ray
install-dependencies.sh
-1
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@@ -37,4 +37,3 @@ elif [[ $platform == "macosx" ]]; then
fi
sudo pip install --upgrade git+git://github.com/cloudpipe/cloudpickle.git@0d225a4695f1f65ae1cbb2e0bbc145e10167cce4 # We use the latest version of cloudpickle because it can serialize named tuples.
sudo pip install --upgrade --verbose git+git://github.com/ray-project/numbuf.git@488f881d708bc54e86ed375ee97aa94540808fa1
numbuf/.gitignore
-32
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@@ -1,32 +0,0 @@
# Compiled Object files
*.slo
*.lo
*.o
*.obj
# Precompiled Headers
*.gch
*.pch
# Compiled Dynamic libraries
*.so
*.dylib
*.dll
# Fortran module files
*.mod
*.smod
# Compiled Static libraries
*.lai
*.la
*.a
*.lib
# Executables
*.exe
*.out
*.app
# Build directory
build
numbuf/.gitmodules
-3
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@@ -1,3 +0,0 @@
[submodule "thirdparty/arrow"]
path = thirdparty/arrow
url = https://github.com/pcmoritz/arrow.git
numbuf/.travis.yml
-25
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@@ -1,25 +0,0 @@
sudo: required
language: generic
matrix:
include:
- os: linux
dist: trusty
python: "2.7"
- os: linux
dist: trusty
python: "3.5"
- os: osx
osx_image: xcode7
python: "2.7"
- os: osx
osx_image: xcode7
python: "3.5"
install:
- ./install-dependencies.sh
- python setup.py install --user
script:
- python python/test/runtest.py
numbuf/LICENSE
-201
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@@ -1,201 +0,0 @@
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numbuf/README.md
-2
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@@ -1,2 +0,0 @@
# numbuf
Serializing primitive Python types in Arrow
numbuf/install-dependencies.sh
-36
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@@ -1,36 +0,0 @@
#!/usr/bin/env bash
ROOT_DIR=$(cd "$(dirname "${BASH_SOURCE:-$0}")"; pwd)
platform="unknown"
unamestr="$(uname)"
if [[ "$unamestr" == "Linux" ]]; then
echo "Platform is linux."
platform="linux"
elif [[ "$unamestr" == "Darwin" ]]; then
echo "Platform is macosx."
platform="macosx"
else
echo "Unrecognized platform."
exit 1
fi
if [[ $platform == "linux" ]]; then
# These commands must be kept in sync with the installation instructions.
sudo apt-get update
sudo apt-get install -y cmake build-essential autoconf libtool python-dev python-numpy libboost-all-dev
elif [[ $platform == "macosx" ]]; then
# check that brew is installed
which -s brew
if [[ $? != 0 ]]; then
echo "Could not find brew, please install brew (see http://brew.sh/)."
exit 1
else
echo "Updating brew."
brew update
fi
# These commands must be kept in sync with the installation instructions.
brew install cmake automake autoconf libtool boost
sudo easy_install pip
sudo pip install numpy --ignore-installed six
fi
numbuf/python/src/pynumbuf/adapters/numpy.cc
+1 -4
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@@ -116,10 +116,7 @@ Status SerializeArray(
// must be decremented. This is done in SerializeDict in python.cc.
PyObject* result = PyObject_CallObject(numbuf_serialize_callback, arglist);
Py_XDECREF(arglist);
if (!result) {
return Status::NotImplemented("python error"); // TODO(pcm):
// https://github.com/ray-project/numbuf/issues/10
}
if (!result) { return Status::NotImplemented("python error"); }
builder.AppendDict(PyDict_Size(result));
subdicts.push_back(result);
}
numbuf/python/src/pynumbuf/adapters/python.cc
+2 -8
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@@ -128,10 +128,7 @@ Status append(PyObject* elem, SequenceBuilder& builder, std::vector<PyObject*>&
// must be decremented. This is done in SerializeDict in this file.
PyObject* result = PyObject_CallObject(numbuf_serialize_callback, arglist);
Py_XDECREF(arglist);
if (!result) {
return Status::NotImplemented("python error"); // TODO(pcm):
// https://github.com/ray-project/numbuf/issues/10
}
if (!result) { return Status::NotImplemented("python error"); }
builder.AppendDict(PyDict_Size(result));
subdicts.push_back(result);
}
@@ -285,10 +282,7 @@ Status DeserializeDict(std::shared_ptr<Array> array, int32_t start_idx, int32_t
Py_XDECREF(arglist);
Py_XDECREF(result);
result = callback_result;
if (!callback_result) {
return Status::NotImplemented("python error"); // TODO(pcm):
// https://github.com/ray-project/numbuf/issues/10
}
if (!callback_result) { return Status::NotImplemented("python error"); }
}
*out = result;
return Status::OK();
numbuf/python/test/runtest.py
+1 -1
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@@ -38,7 +38,7 @@ class SerializationTests(unittest.TestCase):
self.roundTripTest([{"hello": [1, 2, 3]}])
self.roundTripTest([{"hello": [1, [2, 3]]}])
self.roundTripTest([{"hello": (None, 2, [3, 4])}])
self.roundTripTest([{"hello": (None, 2, [3, 4], np.ndarray([1.0, 2.0, 3.0]))}])
self.roundTripTest([{"hello": (None, 2, [3, 4], np.array([1.0, 2.0, 3.0]))}])
def numpyTest(self, t):
a = np.random.randint(0, 10, size=(100, 100)).astype(t)
numbuf/setup.py
+5 -2
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@@ -1,5 +1,5 @@
import subprocess
from setuptools import setup, find_packages, Extension
from setuptools import setup, find_packages
import setuptools.command.install as _install
from sys import platform
@@ -23,7 +23,10 @@ class install(_install.install):
setup(name="numbuf",
version="0.0.1",
packages=find_packages(),
package_data={"numbuf": ["libnumbuf.so", "libarrow" + extension, "libarrow_io" + extension, "libarrow_ipc" + extension]},
package_data={"numbuf": ["libnumbuf.so",
"libarrow" + extension,
"libarrow_io" + extension,
"libarrow_ipc" + extension]},
cmdclass={"install": install},
setup_requires=["numpy"],
include_package_data=True,
numbuf/setup.sh
+3 -3
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@@ -15,7 +15,7 @@ else
exit 1
fi
pushd "$ROOT_DIR/thirdparty"
./download_thirdparty.sh
./build_thirdparty.sh
pushd "$ROOT_DIR"
./thirdparty/download_thirdparty.sh
./thirdparty/build_thirdparty.sh
popd
numbuf/thirdparty/arrow
Vendored
-1
Submodule numbuf/thirdparty/arrow deleted from 58bd7bedc6
numbuf/thirdparty/download_thirdparty.sh
Vendored
+3 -1
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@@ -5,4 +5,6 @@ set -e
TP_DIR=$(cd "$(dirname "${BASH_SOURCE:-$0}")"; pwd)
git submodule update --init --recursive -- "$TP_DIR/arrow"
git clone https://github.com/pcmoritz/arrow.git "$TP_DIR/arrow"
cd "$TP_DIR/arrow"
git checkout 58bd7bedc63d66d5898297bab25b54dfb67665db