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Some improvements to the doc string and code formatting
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+13
-9
@@ -6,15 +6,17 @@ from ..filters import rank_order
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def peak_local_max(image, min_distance=1, threshold_abs=None,
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threshold_rel=None, exclude_border=True, indices=True,
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num_peaks=np.inf, footprint=None, labels=None):
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"""
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Find peaks in an image, and return them as coordinates or a boolean array.
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"""Find peaks in an image as coordinate list or boolean mask.
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Peaks are the local maxima in a region of `2 * min_distance + 1`
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(i.e. peaks are separated by at least `min_distance`).
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NOTE: If peaks are flat (i.e. multiple adjacent pixels have identical
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If peaks are flat (i.e. multiple adjacent pixels have identical
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intensities), the coordinates of all such pixels are returned.
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If both `threshold_abs` and `threshold_rel` are provided, the maximum
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of the two is chosen as the minimum intensity threshold of peaks.
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Parameters
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----------
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image : ndarray of floats
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@@ -33,7 +35,7 @@ def peak_local_max(image, min_distance=1, threshold_abs=None,
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If True, `min_distance` excludes peaks from the border of the image as
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well as from each other.
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indices : bool, optional
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If True (the default), the output will be an array representing peak
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If True, the output will be an array representing peak
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coordinates. If False, the output will be a boolean array shaped as
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`image.shape` with peaks present at True elements.
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num_peaks : int, optional
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@@ -58,10 +60,10 @@ def peak_local_max(image, min_distance=1, threshold_abs=None,
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Notes
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-----
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The peak local maximum function returns the coordinates of local peaks
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(maxima) in a image. A maximum filter is used for finding local maxima.
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This operation dilates the original image. After comparison between
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dilated and original image, peak_local_max function returns the
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coordinates of peaks where dilated image = original.
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(maxima) in an image. A maximum filter is used for finding local maxima.
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This operation dilates the original image. After comparison of the dilated
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and original image, this function returns the coordinates or a mask of the
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peaks where the dilated image equals the original image.
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Examples
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--------
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@@ -90,7 +92,9 @@ def peak_local_max(image, min_distance=1, threshold_abs=None,
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array([[10, 10, 10]])
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"""
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out = np.zeros_like(image, dtype=np.bool)
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# In the case of labels, recursively build and return an output
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# operating on each label separately
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if labels is not None:
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@@ -130,7 +134,7 @@ def peak_local_max(image, min_distance=1, threshold_abs=None,
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else:
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size = 2 * min_distance + 1
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image_max = ndi.maximum_filter(image, size=size, mode='constant')
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mask = (image == image_max)
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mask = image == image_max
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if exclude_border:
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# zero out the image borders
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