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Update tests
Docstring and TODO Update docstring Style fixes Update equalize_adapthist to use new view_as_windows Update equalize_adapthist to use new view_as_windows Try rbase again Update equalize_adapthist to use new view_as_windows Fix relative imports Style fixes Add a deprecation warning and add to api_changes.txt Update TODO and switch to 0.13 deprecation Preserve the current API as much as possible and defer to 0.14 Move the new kwarg to the very end Clarify deprecation warning Update to use row/col in clahe Update docstring Use optimal_step to set up view_as_windows Update equalize_adapthist to use new view_as_windows Try rbase again Update equalize_adapthist to use new view_as_windows Fix relative imports Style fixes Add a deprecation warning and add to api_changes.txt Update TODO and switch to 0.13 deprecation Preserve the current API as much as possible and defer to 0.14
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@@ -16,7 +16,7 @@ Version 0.13
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* Remove deprecated edge filters `hsobel`, `vsobel`, `hscharr`, `vscharr`,
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`hprewitt`, `vprewitt`, `roberts_positive_diagonal`,
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`roberts_negative_diagonal` in `skimage/filters/edges.py`
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* Remove deprecated ``ntiles_*` kwargs in ``equalize_adapthist``.
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Version 0.12
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@@ -22,12 +22,16 @@ from ..exposure import rescale_intensity
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from ..util import view_as_windows
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<<<<<<< HEAD
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<<<<<<< HEAD
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<<<<<<< HEAD
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from .._shared.utils import skimage_deprecation, warnings
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=======
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>>>>>>> 3bcbbc0... Update equalize_adapthist to use new view_as_windows
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=======
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from .._shared.utils import skimage_deprecation
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>>>>>>> 446f383... Add a deprecation warning and add to api_changes.txt
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=======
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from .._shared.utils import skimage_deprecation, warnings
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>>>>>>> 204208a... Preserve the current API as much as possible and defer to 0.14
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NR_OF_GREY = 2 ** 14 # number of grayscale levels to use in CLAHE algorithm
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@@ -35,6 +39,7 @@ NR_OF_GREY = 2 ** 14 # number of grayscale levels to use in CLAHE algorithm
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@adapt_rgb(hsv_value)
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<<<<<<< HEAD
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<<<<<<< HEAD
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def equalize_adapthist(image, ntiles_x=8, ntiles_y=8, clip_limit=0.01,
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nbins=256, kernel_size=None):
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=======
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@@ -43,6 +48,9 @@ def equalize_adapthist(image, kernel_size=64, ntiles_x=None, ntiles_y=None,
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clip_limit=0.01, nbins=256):
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>>>>>>> 3bcbbc0... Update equalize_adapthist to use new view_as_windows
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=======
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=======
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def equalize_adapthist(image, ntiles_x=8, ntiles_y=8, kernel_size=None,
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>>>>>>> 204208a... Preserve the current API as much as possible and defer to 0.14
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clip_limit=0.01, nbins=256):
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>>>>>>> 172fb0d... Style fixes
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"""Contrast Limited Adaptive Histogram Equalization (CLAHE).
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@@ -58,23 +66,11 @@ def equalize_adapthist(image, kernel_size=64, ntiles_x=None, ntiles_y=None,
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kernel_size: integer or 2-tuple
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Defines the shape of contextual regions used in the algorithm.
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If an integer is given, the shape will be a square of
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<<<<<<< HEAD
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<<<<<<< HEAD
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sidelength given by this value.
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ntiles_x : int, optional (deprecated in favor of ``kernel_size``)
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Number of tile regions in the X direction (horizontal).
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ntiles_y : int, optional (deprecated if favor of ``kernel_size``)
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Number of tile regions in the Y direction (vertical).
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=======
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sidelength given by its value.
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=======
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sidelength given by this value.
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>>>>>>> 172fb0d... Style fixes
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ntiles_x : int, optional
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Number of tile regions in the X direction.
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ntiles_y : int, optional
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Number of tile regions in the Y direction.
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>>>>>>> 3bcbbc0... Update equalize_adapthist to use new view_as_windows
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clip_limit : float: optional
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Clipping limit, normalized between 0 and 1 (higher values give more
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contrast).
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@@ -113,7 +109,7 @@ def equalize_adapthist(image, kernel_size=64, ntiles_x=None, ntiles_y=None,
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ntiles_x = ntiles_x or 8
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ntiles_y = ntiles_y or 8
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kernel_size = (np.round(image.shape[0] / ntiles_y),
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np.round(image.shape[1] / ntiles_x))
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np.round(image.shape[1] / ntiles_x))0.14
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if isinstance(kernel_size, numbers.Number):
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kernel_size = (kernel_size, kernel_size)
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@@ -214,8 +214,7 @@ def test_adapthist_grayscale():
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with expected_warnings(['precision loss|non-contiguous input',
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'deprecated']):
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adapted_old = exposure.equalize_adapthist(img, 10, 9, clip_limit=0.01,
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adapted = exposure.equalize_adapthist(img, kernel_size=(57, 51), clip_limit=0.01, nbins=128)
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assert_almost_equal = np.testing.assert_almost_equal
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adapted = exposure.equalize_adapthist(img, kernel_size=(57, 51), clip_limit=0.01, nbins=128)most_equal
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assert img.shape == adapted.shape
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assert_almost_equal(peak_snr(img, adapted), 90.669, 3)
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assert_almost_equal(norm_brightness_err(img, adapted), 0.084, 3)
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