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Add string inputs for range parameters of rescale_intensity
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@@ -134,7 +134,11 @@ dtype range::
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Here, the ``in_range`` argument is set to the maximum range for a 10-bit image.
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By default, ``rescale_intensity`` stretches the values of ``in_range`` to match
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the range of the dtype.
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the range of the dtype. ``rescale_intensity`` also accepts strings as inputs
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to ``in_range`` and ``out_range``, so the example above could also be written
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as::
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>>> image = exposure.rescale_intensity(img10bit, in_range='uint10')
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Note about negative values
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@@ -7,8 +7,16 @@ from skimage._shared.utils import deprecated
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__all__ = ['histogram', 'cumulative_distribution', 'equalize',
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'rescale_intensity', 'adjust_gamma',
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'adjust_log', 'adjust_sigmoid']
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'rescale_intensity', 'adjust_gamma', 'adjust_log', 'adjust_sigmoid']
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DTYPE_RANGE = dtype_range.copy()
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DTYPE_RANGE.update((d.__name__, limits) for d, limits in dtype_range.items())
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DTYPE_RANGE.update({'uint10': (0, 2**10 - 1),
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'uint12': (0, 2**12 - 1),
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'uint14': (0, 2**14 - 1),
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'bool': dtype_range[np.bool_],
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'float': dtype_range[np.float64]})
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def histogram(image, nbins=256):
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@@ -143,14 +151,15 @@ def rescale_intensity(image, in_range=None, out_range=None):
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----------
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image : array
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Image array.
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in_range : 2-tuple (float, float)
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in_range : 2-tuple (float, float) or str
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Min and max *allowed* intensity values of input image. If None, the
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*allowed* min/max values are set to the *actual* min/max values in the
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input image.
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out_range : 2-tuple (float, float)
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input image. Intensity values outside this range are clipped.
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If string, use data limits of dtype specified by the string.
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out_range : 2-tuple (float, float) or str
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Min and max intensity values of output image. If None, use the min/max
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intensities of the image data type. See `skimage.util.dtype` for
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details.
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details. If string, use data limits of dtype specified by the string.
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Returns
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-------
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@@ -201,11 +210,16 @@ def rescale_intensity(image, in_range=None, out_range=None):
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if in_range is None:
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imin = np.min(image)
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imax = np.max(image)
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elif in_range in DTYPE_RANGE:
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imin, imax = DTYPE_RANGE[in_range]
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else:
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imin, imax = in_range
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if out_range is None:
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omin, omax = dtype_range[dtype]
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if out_range is None or out_range in DTYPE_RANGE:
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out_range = dtype if out_range is None else out_range
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if out_range is None:
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out_range
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omin, omax = DTYPE_RANGE[out_range]
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if imin >= 0:
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omin = 0
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else:
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@@ -44,6 +44,11 @@ def check_cdf_slope(cdf):
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# Test rescale intensity
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# ======================
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uint10_max = 2**10 - 1
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uint16_max = 2**16 - 1
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def test_rescale_stretch():
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image = np.array([51, 102, 153], dtype=np.uint8)
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out = exposure.rescale_intensity(image)
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@@ -76,6 +81,18 @@ def test_rescale_out_range():
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assert_close(out, [0, 63, 127])
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def test_rescale_named_in_range():
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image = np.array([0, uint10_max, uint10_max + 100], dtype=np.uint16)
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out = exposure.rescale_intensity(image, in_range='uint10')
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assert_close(out, [0, uint16_max, uint16_max])
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def test_rescale_named_out_range():
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image = np.array([0, uint16_max], dtype=np.uint16)
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out = exposure.rescale_intensity(image, out_range='uint10')
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assert_close(out, [0, uint10_max])
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# Test adaptive histogram equalization
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# ====================================
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