DOC: illustrate mosaic in gallery

This commit is contained in:
François Boulogne
2016-06-18 20:20:33 +02:00
parent 20f33e18fe
commit ecb84e7362
2 changed files with 20 additions and 9 deletions
+19 -8
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@@ -6,10 +6,12 @@ Thresholding
Thresholding is used to create a binary image from a grayscale image [1]_.
Thresholding algorithms can be separated in two categories:
* Global. They are based on the histogram of the pixel intensity of
the image.
* Local. To process a pixel, only the neighboring pixels are used.
These algorithms often require more computation time.
* Histogram-based. The histogram of the pixel intensity is used and
assumptions may be made on the properties of this histogram (e.g. bimodal).
* Local. To process a pixel, only the neighboring pixels are used.
These algorithms often require more computation time.
Scikit-image includes a function to test thresholding algorithms provided
in the library. Therefore, in a glance, you can select the best algorithm
@@ -18,20 +20,26 @@ for you data, without a deep understanding of their mechanisms.
.. [1] https://en.wikipedia.org/wiki/Thresholding_%28image_processing%29
"""
import matplotlib
import matplotlib.pyplot as plt
from skimage.data import page
from skimage.filters import thresholding
img = page()
# Here, we specify a radius for local thresholding algorithm.
# If it is not specified, only global algorithms are called.
fig, ax = mosaic_threshold(img, radius=20, figsize=(10,8), verbose=False)
fig
fig, ax = thresholding.mosaic_threshold(img, radius=20,
figsize=(10,8), verbose=False)
fig.show()
"""
.. image:: PLOT2RST.current_figure
This example uses Otsu's method [2]_ to calculate the threshold value.
Now, we illustrate how to apply one of these thresholding algorithms
This example uses Otsu's method [2]_.
Otsu's method calculates an "optimal" threshold (marked by a red line in the
histogram below) by maximizing the variance between two classes of pixels,
@@ -55,7 +63,6 @@ image = camera()
thresh = threshold_otsu(image)
binary = image > thresh
#fig, (ax1, ax2, ax3) = plt.subplots(1, 3, figsize=(8, 2.5))
fig = plt.figure(figsize=(8, 2.5))
ax1 = plt.subplot(1, 3, 1, adjustable='box-forced')
ax2 = plt.subplot(1, 3, 2)
@@ -74,3 +81,7 @@ ax3.set_title('Thresholded')
ax3.axis('off')
plt.show()
"""
.. image:: PLOT2RST.current_figure
"""