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Stephan's comments
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@@ -1,13 +1,13 @@
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=========================
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How to parallelize loops?
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=========================
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========================
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How to parallelize loops
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========================
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In image processing, we frequently apply the same algorithm
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on a large batch of images. Let us define an example.
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on a large batch of images. Here is an example:
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.. code-block:: python
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from skimage import data, color
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from skimage import data, color, util
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from skimage.restoration import denoise_tv_chambolle
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from skimage.feature import hog
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@@ -25,24 +25,18 @@ on a large batch of images. Let us define an example.
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# Prepare images
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hubble = data.hubble_deep_field()
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width = 10
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pics = [hubble[:,slice:slice+width] for slice in range(0, 1000, width)]
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pics = util.view_as_windows(hubble, (width, hubble.shape[1], hubble.shape[2]), step=width)
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To call the function ``task`` on each element of the list ``pics``, it is
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usual to write a for loop. To measure the execution time of this loop, a function
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is defined and called with ``timeit``.
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usual to write a for loop. To measure the execution time of this loop, you can
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use ipython and measure the execution time with ``%timeit``.
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.. code-block:: python
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def classic_loop():
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for image in pics:
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task(image)
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task(image[0][0])
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import timeit
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print("classic_loop():", timeit.timeit("classic_loop()", setup="from __main__ import (classic_loop, task, pics)", number=1))
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Alternatively, you can use ipython and measure the execution time with ``%timeit``.
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.. code-block:: python
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%timeit classic_loop()
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@@ -51,7 +45,7 @@ Another equivalent way to code this loop is to use a comprehension list which ha
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.. code-block:: python
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def comprehension_loop():
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[task(image) for image in pics]
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[task(image[0][0]) for image in pics]
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%timeit comprehension_loop()
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@@ -62,6 +56,6 @@ The number of jobs can be specified.
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from joblib import Parallel, delayed
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def joblib_loop():
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Parallel(n_jobs=4)(delayed(task)(i) for i in pics)
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Parallel(n_jobs=4)(delayed(task)(i[0][0]) for i in pics)
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%timeit joblib_loop()
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