0643b8108f
DOC: Remove commented out code.
2012-09-02 17:53:22 -04:00
e6ca084aee
DOC: Remove inherited-members Sphinx role.
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Documenting inherited methods and attributes can lead to overly verbose docs. For example, the `Image` class, which subclasses ndarray, and various viewer-related classes, which subclass PyQt and Matplotlib classes, have hundreds of irrelevant methods added to the API docs.
2012-09-02 17:53:22 -04:00
0a92bf84e1
DOC: Remove inheritance-diagram Sphinx role.
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Either the role should be removed (as done here) or the inheritance-diagram extension needs to be added to the config file. Since skimage doesn't have a complicated class hierarchies, it's probably best to remove.
2012-09-02 17:53:22 -04:00
4d1533ab25
Merge pull request #278 from wuan/tv_denoise_fix
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fixed data of tv_denoise result images to be in default range for floats
2012-09-02 14:14:38 -07:00
9f65d08515
Merge pull request #292 from ahojnnes/geometric-coeffs
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Hide coefficient variable of geometric transforms
2012-09-02 13:59:08 -07:00
c851053084
specified float array result in docstring
2012-09-02 21:18:00 +02:00
12b8d8d051
cleanup of tests hence all results of tv denoise operations are returned as float
2012-09-02 21:17:18 +02:00
a9116f877e
Hide coefficient variable of geometric transforms
2012-09-02 20:15:44 +02:00
ded9c93a44
Merge pull request #291 from tonysyu/sphinx-import-warnings
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DOC: Sphinx import warnings.
2012-09-02 09:38:30 -07:00
12c35908c9
DOC: Separate config sections in conf.py
2012-09-02 12:32:14 -04:00
8b15656feb
Change import to silence import errors in docs.
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`import skimage` in submodules seems to cause issues with Sphinx autodocs. (Maybe some sort of circular import issue.) Note the `ImportErrors` fixed by this commit don't actually cause sphinx build errors; Sphinx seems to capture the errors, but it's annoyingly noisy, nonetheless.
2012-09-02 12:23:52 -04:00
bd0d47a183
DOC: Turn off numpydoc flag to silence warnings
2012-09-02 12:23:17 -04:00
58a57238cc
Merge pull request #282 from JDWarner/multispectral_random_walker
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Multispectral random walker
2012-09-02 06:23:58 -07:00
0db4893680
DOC: Fix broken doc build due to broken import
2012-09-02 08:22:21 -04:00
aa08e8a559
Fix for predefined output array
2012-09-02 13:41:25 +02:00
c47e230847
Merge pull request #289 from tonysyu/qtmpl-collection-viewer
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ENH: Add CollectionViewer.
2012-09-02 04:39:23 -07:00
1dc50c108a
Merge pull request #290 from tonysyu/qtmpl-lineprofile
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ENH: Add line profile plugin to viewer.
2012-09-02 04:37:11 -07:00
53b1860a72
Merge pull request #287 from ahojnnes/morph
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ENH: Improve performance of erosion and dilation.
2012-09-02 04:36:19 -07:00
2c37c70ca3
Fix support for predefined output array
2012-09-02 13:35:12 +02:00
373b3293ee
Use numpy testing functions
2012-09-02 13:28:07 +02:00
de47332bd2
Add fast morphological operations for binary images
2012-09-02 13:25:52 +02:00
2842515dc3
Improve doc string layout
2012-09-02 10:34:09 +02:00
224fcb5d01
Convert selem to uint8
2012-09-02 09:58:02 +02:00
41ea3ba7fd
Add line profile plugin back in.
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I saved a copy of the line profile plugin in a branch and then deleted the plugin from the main qtmpl-viewer branch. Unfortunately, I forgot that rebasing off the main branch would erase the plugin. This commit just adds the plugin back.
2012-09-01 15:42:52 -04:00
7d858a8ba9
ENH: Add CollectionViewer
2012-09-01 15:31:34 -04:00
f500ed0b8f
Merge pull request #288 from tonysyu/bento-update
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PKG: Bento update.
2012-09-01 08:40:49 -07:00
ed05b88740
BUG: Update bento.info to match setup.py files
2012-09-01 10:52:15 -04:00
2314cfd8d6
ENH: Add script to check that bento.info is up-to-date.
2012-09-01 10:48:07 -04:00
6facfd27a1
BUG: Bento version must end with number
2012-09-01 10:48:07 -04:00
a5fe574bd9
Remove unused imports and add missing types
2012-09-01 14:57:56 +02:00
b05c062d24
Refactor erosion and dilation for better performance
2012-09-01 14:54:17 +02:00
74797d6205
Fix decision whether to use warping or fast warping
2012-09-01 09:17:16 +02:00
06d9f7110f
Revert to non parallelized execution
2012-09-01 09:09:25 +02:00
c8c1d5c7e7
Merge pull request #275 from ahojnnes/warps
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ENH: Refactor image warps.
2012-08-31 18:12:08 -07:00
b2e4fd6f32
Add parallel execution support
2012-08-31 23:46:23 +02:00
06092023b8
Merge pull request #285 from ahojnnes/label-example
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Add example script for image labelling
2012-08-31 14:01:00 -07:00
f360316f17
Explicitly define colormap
2012-08-31 22:55:24 +02:00
e3c68e3bbc
Merge pull request #284 from ahojnnes/regionprops-coords
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Add new Coordinates property to regionprops
2012-08-31 13:53:26 -07:00
c9291718f9
Update description with more detailed explanation of applied steps
2012-08-31 22:30:09 +02:00
6e9d6e2857
Improve visualization of labelling
2012-08-31 22:25:10 +02:00
e8ddcefae3
PEP8 compliance, removed scaling, different data parsing.
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This commit represents all recommended changes since the last
commit, notably:
* PEP8 compliance (in new sections; a few old ones still
noncompliant w/indentations)
* Moved `depth` kwarg to end of list and in docstring.
Clarified `depth` docstring, and added section in Notes
further explaining this parameter.
* Added section in Notes warning that for multichannel inputs,
all channels are combined during scaling. The user must
separately normalize each channel prior to calling
random_walker()
* New method for parsing data, allowing more elegant gradient
calculation code. Probably also more extensible. The 2D
multispectral case forced this change.
* New test: `test_multispectral_2d()`
2012-08-31 14:14:46 -05:00
873aa6a5dc
Merge pull request #281 from mkcor/harris_threshold
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Harris threshold
2012-08-31 11:56:02 -07:00
da3f2b5f4d
Add example script for image labelling
2012-08-30 22:00:43 +02:00
cdff128a43
Add new Coordinates property to regionprops
2012-08-30 21:38:33 +02:00
38c3eb54ca
Merge pull request #248 from ahojnnes/clear-border
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Add function to clear border in binary images
2012-08-30 11:24:37 -07:00
b2036aee5c
Add image resize function
2012-08-30 18:41:00 +02:00
15cc7f1779
Add biquadratic interpolation
2012-08-30 18:14:42 +02:00
146d5a3f5b
Remove duplicate subtraction
2012-08-30 17:13:30 +02:00
4cd1f8798b
Add nearest mode for positions outside image
2012-08-30 12:08:21 +02:00
4dfdc7f74f
Update doc string of _warp_fast for bicubic interpolation
2012-08-30 11:57:05 +02:00
Tony S Yu