0fde67bb56
TEST: added test for num_peaks kwarg in peak_local_max.
2013-03-18 15:13:18 +00:00
44095eef81
FIX: number of peaks returned from feature.corner_peaks
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corner_peaks accepted a num_peaks argument, but the call
to peak_local_max inside the function used np.inf instead
of the value of this keyword argument, leading to an unbounded
number of peaks being returned.
2013-03-15 18:50:43 +00:00
a41d74caa4
Merge pull request #441 from spotter/color_deconv
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ENH: Adding color deconvolution for immunohistochemical images.
2013-03-14 06:04:22 -07:00
d0a15a7cf9
FIX: Example in combine_stains docstring.
2013-03-13 15:14:39 +01:00
bad3915d2a
Merge pull request #463 from ahojnnes/pdf-docs
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DOC: Fix LaTeX documentation.
2013-03-13 07:02:38 -07:00
b75776cc2e
ENH: Updated stain separation function docstrings and added matrices to __all__
2013-03-13 14:35:16 +01:00
16863535eb
Re-enable plots in doc strings and generate PDF images for them
2013-03-13 10:59:26 +01:00
74acdc9fa9
FIX: changed unicode dash in docstrings.
2013-03-12 17:09:17 +01:00
6f7158046f
FIX: combine_stains docstring.
2013-03-12 16:41:02 +01:00
b3e557b550
FIX: using the new stain separation functions for the special case of hed.
2013-03-12 16:19:51 +01:00
c43986d6d6
ENH: Adding tests for new stain separation functions.
2013-03-12 16:15:41 +01:00
f48097c5ca
FIX: fixed docstrings. ENH: Added new stain separation matrices.
2013-03-12 16:06:32 +01:00
20f27345c3
FIX: rgb2hed and hed2rgb can work with both signed and unsigned image.
2013-03-12 14:22:53 +01:00
0324737c47
Fix some doc strings for latex docs
2013-03-12 09:39:42 +01:00
332c21f979
Make deprecation warning in doc string bold
2013-03-12 07:29:39 +01:00
a0d9d3f213
Use double instead of single quotes for doc string
2013-03-12 07:28:15 +01:00
0cb0fee339
Remove duplicate code for alternative function
2013-03-11 23:21:52 +01:00
483ebae0c0
Change deprecated decorator to display warning in doc string
2013-03-11 23:18:54 +01:00
b306f9b70f
Revert remove_small_objects to raise TypeError
2013-03-10 19:23:04 +11:00
5b25e7e961
FIX: Replaced non-ascii double quotes in Ruifrok reference.
2013-03-09 13:23:36 +01:00
7c371e1662
FIX: img_as_ubyte function threw ValueError due to floating point errors in hed2rgb function.
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Clipping the output of the hed2rgb function between 0 and 1 seems to correct
the bug without affecting the conversion quality.
2013-03-08 12:58:22 +01:00
d7d87c9461
Merge pull request #390 from tonysyu/canvastools
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ENH: Major overhaul of canvastools.
2013-03-07 23:18:30 -08:00
7439fe96e8
FIX: Testing for ubyte and float images. Input dtypes are converted beforehand.
2013-03-07 00:14:06 +01:00
45f53c9e3a
Fix MSVC error C2036: 'void *' : unknown size
2013-03-06 10:09:59 -08:00
387c72b018
Remove colon as multi-line comment symbol
2013-03-06 16:43:41 +01:00
44350f56c9
Fix vectorized_ops for bento
2013-03-06 16:42:18 +01:00
e6ee2c0db6
BUG: not all histogram memory was aligned correctly
2013-03-05 18:32:09 -05:00
211d64644f
Use np.intp type for indices
2013-03-04 22:45:46 -08:00
97fd434314
Fix ValueError: Buffer dtype mismatch on win-amd64
2013-03-04 17:33:15 -08:00
7ca08cf763
Fix ValueError: Buffer dtype mismatch on win-amd64
2013-03-04 17:32:22 -08:00
dda83fdb55
Fix ValueError: Buffer dtype mismatch on win-amd64
2013-03-04 17:30:40 -08:00
19e938a3de
Fix ValueError: Buffer dtype mismatch on win-amd64
2013-03-04 17:29:44 -08:00
f3924da90b
DOC: Fix typo in remove_small_objects docstring.
2013-03-04 18:36:32 +02:00
9cb354e9d0
Merge pull request #450 from ahojnnes/hough-circle
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RF: Hough circle improvements.
2013-03-04 08:09:08 -08:00
25f16f4a82
Merge pull request #452 from stefanv/jni-morphology-functions
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STY: Minor cleanup on small object removal.
2013-03-04 08:03:34 -08:00
4925205082
Improve performance of normalization
2013-03-04 16:26:06 +01:00
eee2342814
Merge pull request #446 from jni/morphology-functions
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Morphology functions
2013-03-04 06:09:40 -08:00
2e3f82e9d9
Remove unnecessary statement breaks
2013-03-04 15:01:03 +01:00
dec104e9ff
Improve performance and usage of data types of hough circle transformation
2013-03-04 15:00:37 +01:00
0a6b72bfe4
FIX: Fixed test_hed_rgb_roundtrip.
2013-03-04 12:15:35 +01:00
7f5b331f22
FIX: import rgb2hed and hed2rgb in the test_colorconv script.
2013-03-04 12:04:44 +01:00
e4629ed856
FIX: modified color.data.ihc docstring.
2013-03-04 11:45:58 +01:00
40e7aee4de
FIX: Ran autopep8 on colorconv.py FIX: modified color.data.ihc function FIX: smaller ihc.jpg image
2013-03-04 10:50:17 +01:00
dae9b7adfd
STY: Minor cleanup.
2013-03-04 11:30:19 +02:00
3249faf308
Add specific error messages and exceptions
2013-03-04 16:54:29 +11:00
0b97d48742
Merge pull request #444 from jmargeta/MSVC_uint16_fix
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BUG: Fixing MSVC build by adding appropriate typedefs for uint16_t.
2013-03-03 20:20:45 -08:00
3869d1ef8a
Removing unnecessary typedefs for uint16_t in MSVC build
2013-03-03 22:45:09 +01:00
dc83c64d44
Change data type of index variables
2013-03-03 15:37:45 +01:00
6b9ecd80b9
Add raise and labeled image tests
2013-03-04 01:32:05 +11:00
b07f7fd9bd
Rename function to remove_small_objects
2013-03-04 01:32:05 +11:00
Malcolm Reynolds