background=0 by default.
Modified label function so that background pixels are labeled with 0, and
background=0 by default. All tests of _ccomp.pyx pass
Modified a couple of files to be consistent with the new behavior of
measure.label
Modified doctring of label to pass doctest
Modified TODO.txt as well as release notes to mention the new behavior of
label.
Typo in docstring
Typo in docstring
Changed default value of kw argument background in measure.label
Removed unnecessary and outdated comment
Remove ad-hoc images from morphology/tests/data folder.
Add a FIJI generated image to skimage/data.
The image was generated via
>>> img = binary_blobs(32, 0.05, n_dim=3, seed=1234)
>>> img = img.astype(np.uint8)*255
>>> img = img[:-2, ...]
then saved as a sequence of png frames, read into FIJI as an image sequence,
and skeletonized via Plugins -> Skeletonize (2D/3D).
This is currently working with **kwargs except for inplace
which I cannot get working. It works with arrays of type int
but returns an array of type bool. Possibly in future add
labelling for arrays of type int. A UserWarning is produced
when using arrays of type int which seems to work normally
but the test created for this does not pick up the warning.
Any assistance on these issues would be helpful. I started
this at EuroScipy 2015 and this fixes issue #1642
Previously, we were testing that any dtype would get converted to uint8
and then correctly processed. Now, since we are using ndimage, we are
directly processing all dtypes. I've updated the tests accordingly.
Fix handling of multiple warnings
Update all test __init__ files
Update segmentation pkg
Update the color pkg
Update the exposure pkg
Update the filters pkg
Update the io pkg
Update the measure pkg
Update morphology package
Restructure test setup function
Add expected_warnings to __all__
Update restoration pkg.
Remove explicit filter check since it is done elsewhere
Fix the image test helpers
Update the transform pkg
Fix util pkg
Update viewer pkg
Add a function to set up a skimage test
Switch to new test helper function
Import local packages that raise warnings in test setup function
More fixes to doctests
Fix regionprops doc test
Try and fix the test_rank failure.
Remove no longer needed RectangleSelector shim
Skip more doctests in _regionprops
Try importing another scipy subpackage
Reset plugins prior to running collections test
Handle warnings in morphology pkg
Add __init__ for morpohology tests
Handle warnings for novice pkg
Handle warnings for restoration pkg
Handle warnings for segmentation pkg
Handle warnings for _shared pkg
Handle warnings for transform pkg
Handle warnings for util pkg
Handle warnings in viewer module
Juan Nunez-Iglesias