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5047 Commits
Author SHA1 Message Date
Vighnesh Birodkar e8f2805d64 changed to eosion/dilation logic 2016-01-06 15:07:35 -05:00
Vighnesh Birodkar a95c0bdddc passing selem argument 2016-01-06 15:07:35 -05:00
Vighnesh Birodkar 4c05e65670 changed logic to use erosion/dilation 2016-01-06 15:07:35 -05:00
Vighnesh BirodkarandVighnesh Birodkar caba3041d1 indentation correction 2016-01-06 15:06:18 -05:00
Vighnesh BirodkarandVighnesh Birodkar 1769cdddcf added boundary rag construction 2016-01-06 15:06:18 -05:00
Emmanuelle Gouillart 8f2839e1b3 Merge pull request #1747 from JGoutin/OptimizeLevel2Compilation-patch 
Import fail if python is running with -OO
 2015-12-30 23:14:03 +01:00
Emmanuelle Gouillart 33a2182e06 Merge pull request #1705 from deledalle/ref_nlmeans 
DOC : add ref to nlmeans
 2015-12-30 22:06:19 +01:00
Emmanuelle Gouillart 732df5fc55 Merge pull request #1850 from jwiggins/fix/potential-bilateral-leak 
FIX: Move a argument check to avoid leaking malloc'd arrays.
 2015-12-30 21:43:18 +01:00
Egor Panfilov 89784631e7 ENH: Massively reworked code to enable nD-support 2015-12-30 22:45:27 +03:00
emmanuelle 6c9325aadf Minor fixes: errant indent, functools.wraps and python3 style 2015-12-28 21:13:22 +01:00
John Wiggins 72f542100e Use np.empty() instead of malloc/free in _denoise_bilateral. 2015-12-27 23:29:59 -06:00
John Wiggins e528d47d5b FIX: Move a argument check to avoid leaking malloc'd arrays. 2015-12-26 10:55:28 -06:00
Steven Silvester 0d73999cfd Allow axes to be provided to imshow and fix colorbar 
Allow axes to be provided to imshow and fix colorbar

Allow axes to be provided to imshow and fix colorbar

Allow axes to be provided to imshow and fix colorbar

Use tight layout by default

Try and fix appveyor issue

Handle deprecation warning on appveyor

Pin the colorbar to the image using box-forced

Fix tests again

Update function signature

Update function signature

Fix imshow call

Fix docstring with utf characters

Remove kwargs
 2015-12-25 15:12:53 -06:00
emmanuelle fab4265f47 Removed @property decorator, that made _install_properties_doc crash 2015-12-25 12:37:41 +01:00
emmanuelle add3352284 Euler number is only2d 2015-12-25 11:38:23 +01:00
Juan Nunez-Iglesiasandemmanuelle 9317b7be34 Make area a cached property; use np.sum 2015-12-24 19:02:15 +01:00
Juan Nunez-Iglesiasandemmanuelle d8cc148d8c Replace individual errors by 2D decorator 2015-12-24 19:00:43 +01:00
emmanuelle 0359284623 Modified some methods in _RegionProperties class to make them 
dimension-agnostic. Removed the NotImplementedError for 3-D images in
regionprops function.
 2015-12-24 18:56:49 +01:00
emmanuelle e1751f91e2 Some PEP8 in test module 2015-12-24 18:52:57 +01:00
Egor Panfilov 0cc4402c19 DOC: Fixed docstring, moved to assert_nD 2015-12-24 20:35:32 +03:00
Egor Panfilov 2fcf2eafe7 ENH: Added support for multichannel arrays, fixed float scale to [0;1] 2015-12-24 20:35:32 +03:00
Egor Panfilov 0e6e08d0c0 TST: Attempt to fix Travis bug with old packages 2015-12-24 20:35:32 +03:00
Egor 92f3114c9e FIX: Fixed test for biharmonic in accordance to new kernel for edges 2015-12-24 20:35:32 +03:00
Egor add5b8b4d6 FIX/TST: Fixed bug with defected bounding frame, added testcase 2015-12-24 20:35:32 +03:00
Egor Panfilov 1f3721fcbe ENH: Inpainting with biharmonic equation 2015-12-24 20:35:32 +03:00
Emmanuelle Gouillart d4b3aeeed3 Merge pull request #1846 from arokem/hull-docs 
DOC: Small one. The input to this one needs to be 2D.
 2015-12-24 10:34:00 +01:00
Emmanuelle Gouillart 6740ef9849 Merge pull request #1842 from jni/1840 
Specify 2D images in denoise bilateral docstring
 2015-12-24 09:59:11 +01:00
arokem 9fb5f1333d TST: Test both functions(!). 2015-12-23 15:36:35 -08:00
Stefan van der Walt cc8c3b7687 Merge pull request #1847 from emmanuelle/remove_label_from_morphology 
Remove deprecated label function from morphology module in preparation for 0.12 release
 2015-12-23 15:01:46 -08:00
arokem 436d0e8ca3 TST: Test error handling in convex_hull, convex_hull_object. 
Also, a few PEP8 fixes in both module and tests.
 2015-12-23 14:57:44 -08:00
arokem 227211fec7 DOC: Small one. The input to this one needs to be 2D. 2015-12-23 14:24:52 -08:00
emmanuelle 0b61b8f46f Removed deprecated label function from morphology module in preparation 
for 0.12 release.
 2015-12-23 23:24:22 +01:00
Emmanuelle Gouillart 4509338aac Merge pull request #1777 from stevendbrown/rp_intensity_check 
Added label vs. intensity shape checking to regionprops
 2015-12-23 22:34:59 +01:00
Johannes Schönberger c5f9fffaad Merge pull request #1844 from emmanuelle/fix_euler 
Fix euler
 2015-12-23 21:56:46 +01:00
Gregory R. Lee 3f5aa73eb4 Update tests to also use reasonable weights for TV denoising 2015-12-23 12:30:12 -05:00
Gregory R. Lee f143f4b39e Change default weight for denoise_tv_chambolle to a value that is reasonable for float images scaled to the [0, 1] range 2015-12-23 12:29:37 -05:00
emmanuelle d62524f103 Mentioned Euler characteristic (instead of Euler number) in docstring of 
regionprops.
 2015-12-23 16:26:23 +01:00
emmanuelle a56c6071c2 Corrected bug in the computation of the Euler characteristic. 2015-12-23 16:09:13 +01:00
Emmanuelle Gouillart d6105a0fe4 Merge pull request #1782 from pratapvardhan/clncython 
BUG: Buffer dtype mismatch, expected 'Py_ssize_t' but got 'long'
 2015-12-23 15:35:05 +01:00
Juan Nunez-Iglesias e102011098 Specify 2D images in denoise bilateral docstring 
Addresses #1840
 2015-12-23 23:57:22 +11:00
Emmanuelle Gouillart ea9ed9ccd9 Merge pull request #1826 from jni/rag-generic 
Allow construction of simple RAGs from label images
 2015-12-22 17:37:02 +01:00
Steven Silvester a4d0ac85cc Merge pull request #1603 from michaelpacer/draw_coords 
Fixed variable names to accord with r, c naming convention
 2015-12-21 12:11:16 -06:00
Emmanuelle Gouillart f0eec46e5c Merge pull request #1783 from ivoflipse/fix_hog 
Fixing Cythonized version of HOG
 2015-12-19 17:37:24 +01:00
Juan Nunez-Iglesias 14095de291 Merge pull request #1830 from scottsievert/fftconvolve 
Clean up richardson-lucy deconvolution function
 2015-12-16 14:42:24 +11:00
scottsievert fb99e3cce6 styles code (no more functions, less lines) 2015-12-15 19:19:14 -06:00
Juan Nunez-Iglesias 06186710d5 Update outdated docstring of _add_edge_filter 2015-12-16 08:31:30 +11:00
Warren Weckesser 6b908c1bb1 BUG: io: imread in the PIL plugin drops indexed PNG alpha channel. 
When using the PIL plugin to read an indexed PNG file that has
an alpha channel, the alpha channel would be lost.
 2015-12-15 12:30:43 -05:00
Stefan van der Walt 74a015d1d4 radon transform: when circle=True, ignore values outside circle without throwing an error (closes #1808) 2015-12-14 17:13:29 -08:00
Juan Nunez-Iglesias 5c03f2aff5 Bug: not all edges found by asymmetric footprint 
If we have a label image:

[[1, 2],
 [3, 4]]

Then the footprint:

 [[0, 0, 0],
  [0, 1, 1],
  [0, 1, 1]]

will not discover the edge (2, 3), even though that edge should be
present when `connectivity=2`.

This commit fixes the bug by using a complete footprint, without the
top/left surfaces zeroed out.

See also:
https://github.com/scikit-image/scikit-image/pull/1826#issuecomment-164597442
 2015-12-15 10:56:04 +11:00
Stefan van der Walt 4aa08fe353 Simplify cache 2015-12-14 00:42:29 -08:00