Stefan van der Walt
bf5ba4540b
Fix doc setting for Python 2.x
2015-12-14 00:42:29 -08:00
Stefan van der Walt
024dd34b19
Clean up style and PEP8
2015-12-14 00:42:29 -08:00
Stefan van der Walt
5e848f5889
Auto-generate _RegionProps property docstrings
2015-12-14 00:42:29 -08:00
Juan Nunez-Iglesias
4deeb1f802
Move max_id logic to top of RAG constructor
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max_id is used during RAG building iteration, resulting in an error if
it is not defined ahead of the generic_filter stage.
2015-12-14 19:06:43 +11:00
Juan Nunez-Iglesias
53d3154f09
Use a strided 1-element array as dummy filter out
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When using generic_filter to build a graph, the numerical filter
output is actually ignored. Building a full array, even of the
smallest dtype, was wasteful. Using stride_tricks solves this by
creating a single-element buffer into which all output is fed.
2015-12-14 18:57:29 +11:00
Juan Nunez-Iglesias
49aa7cf999
Fix typo in variable name
2015-12-14 18:42:25 +11:00
Juan Nunez-Iglesias
d5819f664a
Add tests for generic RAG construction
2015-12-14 17:12:11 +11:00
Juan Nunez-Iglesias
e9c4c87519
Make RAG generic, requiring only label_image
2015-12-14 17:12:11 +11:00
Juan Nunez-Iglesias
c3d52d602c
Simplify reference to generate_binary_structure
2015-12-14 17:12:11 +11:00
Juan Nunez-Iglesias
97f3ad1a6b
NetworkX is required so remove optional import
2015-12-14 17:12:11 +11:00
Juan Nunez-Iglesias
975d1a4cc0
Merge pull request #1792 from scottsievert/fftconvolve
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Uses fftconvolve instead of convolve2d for speedups
2015-12-14 16:37:18 +11:00
Stefan van der Walt
084ad3c22b
Merge pull request #1821 from jni/integral-image-fixes
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Add deprecation path to skimage.transform.integrate API change
2015-12-13 20:36:16 -08:00
scottsievert
2892e90abc
removes paren
2015-12-13 16:59:59 -06:00
scottsievert
4d6c9e7b84
now N dimensional, changes constant, cleans and comments
2015-12-13 14:57:52 -06:00
Steven Silvester
5b8fd77b80
Merge pull request #1691 from juliusbierk/active-contour-model
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New feature: Active contour model
2015-12-13 14:57:10 -06:00
Charles Deledalle
cc24efbe2b
DOC : change sneaky unicode in the endash
2015-12-13 18:58:01 +01:00
Juan Nunez-Iglesias
0bc3ad8f79
Restore vectorised integrate deprecated behaviour
2015-12-13 16:25:29 +11:00
Juan Nunez-Iglesias
3899c571b7
Test individual coordinates for integrate in doctest
2015-12-13 14:55:44 +11:00
Juan Nunez-Iglesias
c7243e7383
Allow passing individual coordinate tuples to integrate
2015-12-13 14:55:23 +11:00
Juan Nunez-Iglesias
5df9e0cf70
Update incorrect version number in docstring
2015-12-13 14:54:57 +11:00
Juan Nunez-Iglesias
458dc15225
Add deprecation warning for old syntax for integrate()
2015-12-13 14:45:45 +11:00
Juan Nunez-Iglesias
38b1880ef7
Update docstring comments for integrate function
2015-12-13 14:35:59 +11:00
scottsievert
3fd47091dd
adds comment explaining time_ratio decision
2015-12-12 21:15:01 -06:00
Steven Silvester
683ecde2e1
Start deprecation of python 2.6
2015-12-12 20:27:21 -06:00
scottsievert
3f3b705ebd
fixes import, tuple addition
2015-12-12 19:26:10 -06:00
Juan Nunez-Iglesias
8b0d5113eb
Merge pull request #1818 from blink1073/improve_downcast
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Add support for casting from 64bit integers and use smart downcast
2015-12-13 10:54:39 +11:00
Juan Nunez-Iglesias
5eaf2010df
Merge pull request #953 from syedTabish/Issue949
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Update integral image to support nD images
2015-12-13 10:53:09 +11:00
Steven Silvester
4e00d45f68
Improve warning message
2015-12-12 17:07:36 -06:00
Steven Silvester
f3965885e8
Fix failing test
2015-12-12 16:42:54 -06:00
Steven Silvester
be7161d350
Add debug print
2015-12-12 16:20:26 -06:00
Steven Silvester
a6f4419da4
Update failing tests
2015-12-12 14:20:38 -06:00
Steven Silvester
f8d19ae7f0
Allow 64bit integer conversions and direct downcast
2015-12-12 13:40:32 -06:00
Steven Silvester
4b6db6425e
Fix matplotlib backend
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Add a debug print
Try with qtagg
Try with qt4agg
Comment out failing test for now
2015-12-11 10:49:11 -06:00
emmanuelle
a16c530322
Some minor PEP8 issues
2015-12-11 17:21:17 +01:00
scottsievert
1be8336599
adds decision when to use fftconvolve/convolve2d
2015-12-10 19:47:02 -06:00
Juan Nunez-Iglesias
966e0fd685
Merge pull request #1770 from stefanv/list_regionprops
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Only iterate over available region properties
2015-12-09 11:21:56 +11:00
Juan Nunez-Iglesias
1a05b130e8
Merge pull request #1449 from stefanv/clear_border_non_binary
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Allow clear_border to operate on labeled images
2015-12-09 11:18:40 +11:00
Stefan van der Walt
c133d5fd59
Merge pull request #1803 from JDWarner/mesh_orientation_cleanup
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Guarantee correct mesh orientation from marching cubes
2015-12-07 20:13:58 -08:00
Josh Warner (Mac)
443f4cc0eb
DOC: Correct docstring to correctly reflect defaults
2015-12-07 21:12:17 -07:00
emmanuelle and Juan Nunez-Iglesias
bff2ce0bc4
Missing line
2015-12-08 12:27:24 +11:00
emmanuelle and Juan Nunez-Iglesias
bb64e8cfcb
Added test for slic segmentation: case where more segments than pixels
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are asked for.
2015-12-08 12:27:24 +11:00
Gael Varoquaux and Juan Nunez-Iglesias
12c173908f
BUX: in _slic.pyx slice can has steps=None
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int(None) fails, and slice.steps == None is valid. It is equivalent to 1.
2015-12-08 12:27:24 +11:00
Josh Warner
29725068ce
Guarantee correct mesh orientation from marching cubes
2015-12-06 00:28:18 -06:00
Josh Warner
6f016c9087
Merge pull request #1771 from noahtreb/fix-correct_mesh_orientation
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FIX: Fix `correct_mesh_orientation` for spacing != (1,1,1)
2015-12-05 12:22:18 -06:00
Josh Warner
f25b46c9bb
Merge pull request #1799 from ahojnnes/linemodelnd
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FIX: Fix LineModelND test cases and linalg.norm axis error
2015-12-05 11:48:26 -06:00
Steven Silvester
219d08ad7b
Fix errant docstring
2015-12-05 10:35:11 -06:00
Johannes Schönberger
50f2a0b4ed
Create helper function to compute norm along axis
2015-12-04 23:11:19 -05:00
Johannes Schönberger
f88694e5a3
Fix LineModelND test cases
2015-12-04 23:05:59 -05:00
Johannes Schönberger
198ce0250b
Merge pull request #1764 from glemaitre/geometric_mean
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Geometric mean
2015-12-04 18:02:44 -05:00
Johannes Schönberger
99484e3a77
Merge pull request #1795 from kevin-keraudren/ransac-linemodel3D
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Adding LineModel3D for RANSAC, unit test and example.
2015-12-04 17:58:52 -05:00
Stefan van der Walt