Commit Graph

6960 Commits

Author SHA1 Message Date
Stefan van der Walt 2b10dda6b8 Merge pull request #1485 from emmanuelle/model_binary
Add rounded blobs generation
2015-05-12 12:21:47 -07:00
Josh Warner cde04ad964 Merge pull request #1507 from arve0/pop_bilateral_docstring_typo
DOC: Fix minor typo in pop_bilateral docstring
2015-05-12 11:54:56 -05:00
arve0 0eb7d132d3 pop_bilateral docstring: the->pixels 2015-05-12 15:30:14 +02:00
emmanuelle 1ef90468e0 Modified (again) test accuracy. 2015-05-11 22:58:16 +02:00
Stefan van der Walt 92b40816ed Merge pull request #1504 from ahojnnes/denoise_bilateral_fix
Fix out-of-bounds access in color LUT for NaN values
2015-05-10 16:00:11 -07:00
emmanuelle e751d245f3 Modified test with a less stringent condition on numerical value for the
mean value of blobs image.
2015-05-10 23:29:54 +02:00
Johannes Schönberger 0c69cdc5e7 Fix out-of-bounds access in color LUT for NaN values 2015-05-10 13:47:42 -04:00
Steven Silvester 556cb3452c Merge pull request #1498 from cgohlke/patch-2
Fix skimage.io.imread returns incorrect dimensions
2015-05-09 09:02:41 -05:00
emmanuelle 073c9735dc Fixed example in doctest. 2015-05-09 14:51:41 +02:00
emmanuelle a8a39ebf35 Used new function to generate binary blobs in existing gallery example 2015-05-09 12:08:21 +02:00
emmanuelle 1c3af75dd3 Addressed a few minor issues raised by Juan and Stefan. 2015-05-09 10:23:49 +02:00
Stefan van der Walt ef8f8c70d6 Merge pull request #1494 from arve0/reset_button_crop_plugin
Add reset button to crop plugin
2015-05-08 01:35:00 -07:00
Christoph Gohlke 549def734e Fix failing test 2015-05-07 17:35:48 -07:00
Christoph Gohlke 3d3351b9fa Fix failing test 2015-05-07 17:34:05 -07:00
Christoph Gohlke 47cfcb4b8b TST skimage.io.imread returns incorrect dimensions 2015-05-07 15:07:59 -07:00
Christoph Gohlke 3c8bf02fa5 Fix skimage.io.imread returns incorrect dimensions
Fixes #1496
2015-05-07 15:03:25 -07:00
arve0 d7a80f55f3 add reset button to crop plugin 2015-05-07 10:14:38 +02:00
Josh Warner c8a3df5521 Merge pull request #1455 from stefanv/doc/release_notes_and_installation
DOC: Remove coverage table. Add document with release notes and download instructions.
2015-05-07 01:17:00 -05:00
Stefan van der Walt cff1530b8c Correctly refer to combined installation and release notes 2015-05-06 16:53:17 -07:00
Stefan van der Walt 7741317cbb Merge pull request #1475 from gustavla/slic-fix
Fix crashing bug in slic
2015-05-06 00:22:48 -07:00
Steven Silvester add8419f13 Merge pull request #1492 from arve0/viewer_button
viewer: add button widget
2015-05-04 19:58:08 -05:00
arve0 690a839de8 add button class 2015-05-04 12:12:18 +02:00
Steven Silvester edde93048f Merge pull request #1487 from hawkerpl/pillow-imread-error-message-fix
fix more informative error while reading image
2015-05-02 10:13:46 -05:00
hawkerpl 9adcd89883 fix more informative error while reading image 2015-05-02 16:09:41 +02:00
Steven Silvester 944bc8546c Merge pull request #1486 from emmanuelle/remove_image_class
Removed obsolete Image class from io submodule.
2015-05-02 08:44:12 -05:00
emmanuelle b66fa13dfe Removed obsolete Image class from io submodule. 2015-05-01 20:51:12 +02:00
emmanuelle a615623643 Added function to generate binary image with rounded (blob-like) objects. 2015-05-01 19:28:56 +02:00
Gustav Larsson 9de5a4557c Added test for buffer overflow in slic.
As with all buffer overflows, it is hard to make a test that
consistently triggers tests the behavior. This test does not work for me
through the test_slic.py file, but it works in isolation.
2015-04-20 14:35:57 -05:00
Gustav Larsson 841da2b3f8 Fixed crashing bug in slic.
The enforce connectivity step of slic runs a BFS and puts the
results in coord_list. This coord_list has room for max_size elements,
which is easily overrun if there is a large connected element. This
change limits the BFS to max_size, so that if a connected area is bigger
than max_size, it will be split up instead of the program crashing.
2015-04-20 09:39:38 -05:00
Steven Silvester 1396f74cb8 Merge pull request #1469 from stefanv/doc/gh_pages_version
gh-pages: Read skimage version from __init__.py
2015-04-13 22:47:21 -05:00
Stefan van der Walt 2662bd53cc gh-pages: Read skimage version from __init__.py 2015-04-12 23:53:56 -07:00
Steven Silvester 128814026a Merge pull request #1467 from stefanv/doc/novice_examples
Add spacing in novice model to make docs render correctly
2015-04-12 11:37:37 -05:00
Josh Warner 208736a985 Merge pull request #1468 from stefanv/docs/api_cython_funcs
DOCFIX: Pick up Cython functions when building docs API
2015-04-12 09:51:23 -05:00
Stefan van der Walt 633bb7fa52 Pick up Cython functions when building docs API 2015-04-11 23:59:57 -07:00
Stefan van der Walt 80ef48ccfa Add spacing in novice model to make docs render correctly 2015-04-11 22:18:34 -07:00
Steven Silvester 8d038b787e Merge pull request #1464 from jni/fix-doc
Add missing comment '#' markers for doctest skip
2015-04-05 08:57:56 -05:00
Juan Nunez-Iglesias e5991c8aa3 Add missing comment '#' markers for doctest skip
Dunno how these got through but when we start running these it's gonna
fail dramatically!
2015-04-05 16:52:58 +10:00
Steven Silvester 7fbf2ab3f9 Merge pull request #1460 from jni/fix-pil-imsave
Allow keyword arguments to imsave for PIL plugin
2015-04-02 19:42:04 -05:00
Stefan van der Walt bf711d5707 Merge pull request #1461 from matthew-brett/fix-wheel-upload
MAINT: point wheel upload script to terryfy
2015-04-01 12:36:18 -07:00
Matthew Brett 71424c3079 MAINT: point wheel upload script to terryfy
Terryfy repo has wheel uploader script that does the actual wheel upload
/ download step.  Use that instead to simplify local wheel upload
script.
2015-04-01 12:19:19 -07:00
Stefan van der Walt 1a1ebff4ca Merge pull request #1408 from stefanv/tagging
Update tagging instructions for release
2015-04-01 01:14:56 -07:00
Stefan van der Walt f7d47b9881 Merge pull request #1453 from blink1073/only-index-tiff-gif
Only index tif and gif files in collection
2015-03-31 20:17:48 -07:00
Steven Silvester 62e82ccf49 Do not read in the whole array 2015-03-31 20:54:57 -05:00
Juan Nunez-Iglesias af1f567108 Add temporary_file context manager
This provides writeable filenames that are cleaned up when the context
is exited.
2015-03-31 19:31:45 +11:00
Steven Silvester ad8c94fcaf Fix handling of non-gif and tiff files 2015-03-30 21:41:44 -05:00
Juan Nunez-Iglesias b6f2125e71 Allow keyword arguments to imsave for PIL plugin
Certain formats allow additional arguments, such as `compress=` for
TIFF or `quality=` for JPEG. Without this patch, the plugin simply
does not allow these arguments to be passed.
2015-03-31 00:24:23 +11:00
Steven Silvester e531e57124 Only index tif and gif files in collection 2015-03-29 21:54:35 -05:00
Josh Warner 3e9506c6b3 Merge pull request #1457 from blink1073/fix-pkg-resources
FIX: Fix setup to allow installing from PyPI
2015-03-29 21:54:11 -05:00
Steven Silvester eed18b803f Another random warning guard 2015-03-29 15:36:25 -05:00
Steven Silvester adac822ee9 Fix setup to allow installing from PyPI
≈
Fix setup to allow installing from PyPi
Another attempt at fixing the setuptools problem

Fix pip incantation

Fix typo

Try updating setuptools too

Try upgrading pip and setuptools after venv install

Rule out install_requires as the source of the problem

Try just requiring the ones that can be built from source

Use explicit install_requires and move version checks to after setup runs

Clean up installation for PyPI compatiblity

Dead end commit

Fix travis to match new installation procedure

Put build_versions check after install

Fix travis syntax

Switch to lower-case cython in version check

Another attempt

Another fix

Fix syntax error

Make header executable

Build inplace on py27

Fix finding of source code version in sphinx

Fix travis syntax

Import setuptools after install

Fix the version check in sphinx

Work around setuptools bug in 2.7

Fix handling of Cython requirement and update release notes

Switch to one Appveyor build and update build method

Add cython back to install_requires

Remove debug lines

Another try for appveyor install

Another attempt at setuptools and Appveyor

Do not let intermittent apt-get failures crash the build

Fix typo

Another appveyor attempt

More fixes for setuptools and Appveyor

Yet another setuptools/appveyor attempt

Put requirements.txt back in order

Fix typo

Fix readlines function call

Try not using a venv for python 2.7

Fix syntax

Try the provided venv for py27

Remove --user

Remove debug info

Another try for python27 fix

Try again

Do not use install_requires with numpy/scipy

Try just avoiding scipy

Try removing scipy (numpy was before)

Avoid both scipy and numpy

Fix qt install on 27

Fix qt install on 27 agin

Revert the scripts to their previous condition

Revert file permission changes

Undo changes to requirements.txt
2015-03-29 15:36:11 -05:00