4e87f3f54e
Inline helper functions of label
2013-04-09 19:49:14 +02:00
644ab324dd
Added test for ball and octahedton selems.
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Note that only the center slice (in each dimension is tested)
since there is no reference data available for these selems.
I did visualize the 3D shapes to see whether they look right.
2013-03-28 10:03:02 +01:00
77192b6e9a
Adding octahedron selem (3D equivalent of diamond).
2013-03-28 09:48:25 +01:00
fa6a30198c
Fix typo in docstring of disk().
2013-03-27 21:54:49 +01:00
42c72ab106
Add ball selem. I verified in 2D that this usage of np.mgrid yields the exact same results as np.meshgrid (np.meshgrid is not available for 3D).
2013-03-27 21:52:07 +01:00
cbf1657ee7
Add cube selem.
2013-03-27 21:50:08 +01:00
b306f9b70f
Revert remove_small_objects to raise TypeError
2013-03-10 19:23:04 +11:00
19e938a3de
Fix ValueError: Buffer dtype mismatch on win-amd64
2013-03-04 17:29:44 -08:00
f3924da90b
DOC: Fix typo in remove_small_objects docstring.
2013-03-04 18:36:32 +02:00
dae9b7adfd
STY: Minor cleanup.
2013-03-04 11:30:19 +02:00
3249faf308
Add specific error messages and exceptions
2013-03-04 16:54:29 +11:00
6b9ecd80b9
Add raise and labeled image tests
2013-03-04 01:32:05 +11:00
b07f7fd9bd
Rename function to remove_small_objects
2013-03-04 01:32:05 +11:00
d6c5ba38ef
Improve docstring for remove_small_connected_components
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- Explain behavior if input is of int type.
- Add `Raises` section for possible errors.
- Remove explicit numpy import from example.
2013-03-04 01:32:05 +11:00
5222fb5ff7
Add tests for remove_small_connected_components
2013-03-04 01:32:05 +11:00
24b14508c8
Add examples to docstring
2013-03-04 01:32:05 +11:00
5686e11c97
Add funct to remove small connected compononents
2013-03-04 01:32:04 +11:00
6e0112f449
BUG: Recast label output to satisfy ndimage on 32-bit platforms.
2013-03-03 15:34:09 +02:00
62d83ad42c
Globally change np to cnp if cimported
2013-02-24 14:14:14 +01:00
614023b941
Replace ssize_t with Py_ssize_t globally
2013-02-22 17:05:38 +01:00
2c90aa70e5
Use np.intp rather than ssize_t for ndarrays
2013-02-22 17:05:11 +01:00
c9f72e93d6
Change type to ssize_t for all index and size variables
2013-02-22 17:05:10 +01:00
11f32577ab
Fix wrong include paths for shared subpackage
2013-01-23 14:54:33 +01:00
a641ce6a0e
BUG: Move import inside deprecated function
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Fixes circular import
2012-12-15 15:59:14 -05:00
45a91aa9c5
doc: deprecated string and docstring formatting fixes in is_local_maximum
2012-11-25 22:56:45 -06:00
d2262227d9
BUG - rank_order now imported.
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Also changed (peak.py):
* Standardized documentation as requested.
* Removed `threshold` as an optional kwarg.
* Removed extra line break incorrect by PEP8 standards.
Also changed (watershed.py):
* Added @deprecated decorator and import statement
2012-11-24 17:24:14 -06:00
da5a2a8221
BUG - Now parsing all unique labels != 0 properly, and set threshold_rel=0 in is_local_maximum() wrapper.
2012-11-20 01:11:31 -06:00
226eaaff92
FEAT - Unified peak finder backend
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Detailed changelist:
* Fully documented new API for peak_local_max()
* Removed commented-out old code for is_local_maximum()
* Added "See also" and "Notes" to is_local_maximum() redirecting to peak_local_max()
2012-11-20 00:12:47 -06:00
63b5c5a4a0
FEAT - combined API from is_local_maximum() into peak_local_max()
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is_local_maximum() is a wrapper function for peak_local_max()
is_local_maximum() runs much faster (~20% of prior runtime, nearly = to peak_local_max())
All tests in .feature and .morphology subpackages pass as written with these changes.
Todo:
* Fully document API
* remove commented-out old algorithm in is_local_maximum()
* add new tests for full coverage of new, more complex peak_local_max()
2012-11-19 23:38:58 -06:00
c17ffe6c32
Merge pull request #351 from ahojnnes/test-coverage
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Test coverage
2012-10-09 14:51:23 -07:00
9b5cb1ca8a
Merge pull request #360 from tonysyu/fix-doctest-imports
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DOC: Add imports to doctests to fix errors
2012-10-08 22:50:38 -07:00
ab2411cd19
DOC: Add imports to doctests to fix errors
2012-10-08 20:30:33 -04:00
b4b090271d
complete singularization of scikit-image
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I've updated references in the code and documentation to the new name.
2012-10-08 16:29:55 -07:00
0ab93bbf36
Remove redundant dtype conversion
2012-10-06 21:54:12 +02:00
48572fd0a3
Remove obsolete license note as code has been refactored
2012-10-06 21:52:15 +02:00
6c59e04714
MISC remove unused imports, some pep8 corrections.
2012-09-27 20:01:45 +01:00
538ce329a5
DOC: fix numpy dtype print out.
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This fix may be very dependent on numpy version since print out has change over time.
2012-09-11 23:47:18 -04:00
56b1476789
Add test case for non-square images
2012-09-11 20:27:18 +02:00
f478b6a397
Fix bug in binary dilation and test case
2012-09-11 20:11:55 +02:00
b1d99be735
Fix bug in grey erosion and dilation
2012-09-11 09:09:10 +02:00
84ac91927d
DOC: Fix citation syntax
2012-09-02 18:03:55 -04:00
8b15656feb
Change import to silence import errors in docs.
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`import skimage` in submodules seems to cause issues with Sphinx autodocs. (Maybe some sort of circular import issue.) Note the `ImportErrors` fixed by this commit don't actually cause sphinx build errors; Sphinx seems to capture the errors, but it's annoyingly noisy, nonetheless.
2012-09-02 12:23:52 -04:00
aa08e8a559
Fix for predefined output array
2012-09-02 13:41:25 +02:00
2c37c70ca3
Fix support for predefined output array
2012-09-02 13:35:12 +02:00
373b3293ee
Use numpy testing functions
2012-09-02 13:28:07 +02:00
de47332bd2
Add fast morphological operations for binary images
2012-09-02 13:25:52 +02:00
2842515dc3
Improve doc string layout
2012-09-02 10:34:09 +02:00
224fcb5d01
Convert selem to uint8
2012-09-02 09:58:02 +02:00
a5fe574bd9
Remove unused imports and add missing types
2012-09-01 14:57:56 +02:00
b05c062d24
Refactor erosion and dilation for better performance
2012-09-01 14:54:17 +02:00
Johannes Schönberger