50c0399aa7
Merge pull request #379 from cpsaltis/fix_rotate
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Fix resize argument handling in rotate.
2012-12-03 14:48:52 -08:00
55b4a1e70e
Merge pull request #383 from stefanv/windowserror
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BUG: WindowsError not defined under Linux.
2012-12-03 10:01:08 -08:00
68c2ab205e
BUG: WindowsError not defined under Linux.
2012-12-03 08:49:35 -08:00
099b94efa1
Merge pull request #375 from ahojnnes/hough-peak-example
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Add example for hough_peaks function
2012-12-03 06:35:47 -08:00
298abe1ac0
Add test for resize option in rotate
2012-12-03 15:54:26 +02:00
49e06c9755
Add title to hough peak detection example plot
2012-12-03 14:37:26 +01:00
989d1de598
Merge pull request #380 from tonysyu/mark-boundaries-regression
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Make black the default boundary color for mark_boundaries.
2012-12-02 23:20:01 -08:00
6953785eab
added rgb2lab test
2012-12-02 22:51:16 -08:00
bf28a38f6e
ENH: Make black the default boundary color for mark_boundaries.
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This improves visibility in light-colored image regions. Note also that the new behavior matches the behavior from the 0.7 release.
2012-12-02 16:02:27 -05:00
2e1729a9fb
Cleaned up adapthist func to use LAB for all RGB->required rest result change
2012-12-01 23:46:52 -06:00
afd1eed22f
Merge pull request #1 from amueller/xyz_fix
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FIX quickshift nosetest with different xyz color conversion
2012-12-01 15:20:21 -08:00
22f94d8707
Fix resize argument handling in rotate.
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It used to have exactly the opposite effect that it supposed to.
2012-12-01 12:30:40 +02:00
b5d1e9f209
FIX quickshift nosetest with different xyz color conversion
2012-11-30 15:36:01 +01:00
43eb33d26b
flake8 on colorconv.py and removed unneeded .copy()
2012-11-30 01:30:59 -08:00
c5e047ff0e
Add join_segmentations example to the gallery
2012-11-30 15:25:00 +11:00
5108d8c346
Fixed RGB<->XYZ conversion.
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Now correctly follows the algorithm from EasyRGB.
Also fixed a XYZ<->Lab conversion issue by adding
a .copy().
2012-11-29 12:06:01 -08:00
b906082034
Add testing functions for join and relabel
2012-11-28 12:48:13 +11:00
dc377970f5
Add functions to join and relabel segmentations
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The join of two segmentations is the segmentation in which two voxels
are in the same segment if and only if they are in the same segment in
both input segmentations.
2012-11-28 12:22:14 +11:00
98ce475113
style: initialize out at beginning of function
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* remove API compatibility comment
* remove unnecessary `del maskim`
2012-11-25 23:09:06 -06:00
45a91aa9c5
doc: deprecated string and docstring formatting fixes in is_local_maximum
2012-11-25 22:56:45 -06:00
d2262227d9
BUG - rank_order now imported.
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Also changed (peak.py):
* Standardized documentation as requested.
* Removed `threshold` as an optional kwarg.
* Removed extra line break incorrect by PEP8 standards.
Also changed (watershed.py):
* Added @deprecated decorator and import statement
2012-11-24 17:24:14 -06:00
a77923fe4c
Merge pull request #373 from luispedro/imread_io_plugin
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ENH: Add imread io plugin.
2012-11-24 11:07:52 -08:00
38f699471e
TST Remove unneeded test
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Per stefanv's comment on github, this was testing functionality higher
up in skimage.io
2012-11-24 19:04:55 +00:00
1f84c5e35f
DOC Add myself to CONTRIBUTORS.txt
2012-11-24 19:04:43 +00:00
10ce9b89ab
RFCT Use skimage.utils.convert for type conversion
2012-11-24 19:04:16 +00:00
6ebc43bad8
ENH Add imread io plugin
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This relies on imread (https://github.com/luispedro/imread ) which
supports a few microscopy formats otherwise hard to read (LSM and
MetaMorph STK) as well as basic ones.
2012-11-24 19:04:01 +00:00
e7288f9140
BUG - Dtype conversion to Boolean in a new code path not included in current tests.
2012-11-20 01:17:42 -06:00
da5a2a8221
BUG - Now parsing all unique labels != 0 properly, and set threshold_rel=0 in is_local_maximum() wrapper.
2012-11-20 01:11:31 -06:00
233b368195
BUG - Fixed a bug where the image was not properly masked for each unique label.
2012-11-20 00:45:01 -06:00
33c9514062
BUG - Fixed a bug where, when indices = False, output was not Boolean.
2012-11-20 00:36:12 -06:00
226eaaff92
FEAT - Unified peak finder backend
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Detailed changelist:
* Fully documented new API for peak_local_max()
* Removed commented-out old code for is_local_maximum()
* Added "See also" and "Notes" to is_local_maximum() redirecting to peak_local_max()
2012-11-20 00:12:47 -06:00
63b5c5a4a0
FEAT - combined API from is_local_maximum() into peak_local_max()
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is_local_maximum() is a wrapper function for peak_local_max()
is_local_maximum() runs much faster (~20% of prior runtime, nearly = to peak_local_max())
All tests in .feature and .morphology subpackages pass as written with these changes.
Todo:
* Fully document API
* remove commented-out old algorithm in is_local_maximum()
* add new tests for full coverage of new, more complex peak_local_max()
2012-11-19 23:38:58 -06:00
a7527adf31
Add example for hough_peaks function
2012-11-17 22:27:11 +01:00
13c61b9694
Merge pull request #361 from ahojnnes/hough-peaks
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Add hough transform peak detection
2012-11-17 07:30:08 -08:00
9d653fec78
BUG: Clean up imports
2012-11-15 23:53:47 -05:00
0d411e21dc
STY: Refactor parts of LineTool to CanvasToolBase
2012-11-15 22:04:02 -05:00
d219a76f58
BUG: Fix blitting behavior in canvastools
2012-11-15 21:56:51 -05:00
2df0cdb443
Merge pull request #374 from tonysyu/add-rank-to-bentoinfo
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Add rank extensions to bento.info
2012-11-15 00:42:53 -08:00
5be5813070
STY: Reuse ThickLineTool in LineProfile
2012-11-15 00:16:19 -05:00
2ff3e78c52
BUG: Move callback connection to parent class
2012-11-15 00:16:19 -05:00
4f6f25efe9
ENH: Add canvastools subpckages with base class and line tools
2012-11-15 00:16:19 -05:00
d6a0b08859
ENH: Add filter.rank extensions to bento.info
2012-11-14 20:46:47 -05:00
2a8466a549
ENH: Compare full paths of cython extensions.
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If setup.py defined an extension in a subdirectory, the extension name in bento.info didn't match the one found in setup.py. Comparing the full extension path fixes the issue.
2012-11-14 20:43:52 -05:00
22a73fc0cb
BUG: Adapt to whitespace in text search
2012-11-14 20:08:16 -05:00
80a9a5aba5
Apply numpy reference style to rank filter descriptions
2012-11-14 08:33:27 +01:00
2403bee27c
Merge pull request #348 from odebeir/rank_filters
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Rank filters
2012-11-13 23:30:12 -08:00
70f2b67ef7
fix: ref and test_otsu doc
2012-11-14 08:00:59 +01:00
698d6ae13f
fix:< Py_ssize_t > 0 and & pop
2012-11-13 17:07:21 +01:00
411d4686d5
fix:wrap lines in tests
2012-11-13 17:02:08 +01:00
f133158792
autopep8 for plot_* and rank sources
2012-11-13 09:37:58 +01:00
Johannes Schönberger