Johannes Schönberger
535c141e3b
Merge pull request #755 from jni/rename-relabel
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Rename `relabel_from_one`
2013-10-06 01:49:57 -07:00
Juan Nunez-Iglesias
a9afb241cc
Rename deprecated relabel_from_one in docstring example
2013-10-03 16:23:30 +10:00
Juan Nunez-Iglesias
a8488bfecd
Remove deprecated use of relabel_from_one
2013-10-03 16:14:30 +10:00
Juan Nunez-Iglesias
bfab493133
Add new tests for relabel_sequential
2013-10-03 16:11:52 +10:00
Juan Nunez-Iglesias
37f66f769b
Add relabel_sequential to __init__ import
2013-10-03 16:09:27 +10:00
Juan Nunez-Iglesias
1843829917
Add relabel_sequential, deprecate relabel_from_one
2013-10-03 16:08:29 +10:00
Johannes Schönberger
547c0bb7d8
Merge pull request #752 from sciunto/pep
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Pep8 and other misc cosmetics.
2013-10-02 09:30:01 -07:00
François Boulogne
a1373269e6
DOC: fix indent
2013-10-02 18:28:14 +02:00
François Boulogne
4a7d2e8429
PEP8
2013-10-02 18:14:21 +02:00
François Boulogne
8f20fff3f8
PEP8: fix indentation
2013-10-02 18:14:21 +02:00
François Boulogne
90db96f3eb
DOC: add missing import
2013-10-02 18:14:21 +02:00
François Boulogne
628d484942
DOC: no import numpy in doc
2013-10-02 18:14:21 +02:00
François Boulogne
2e2a82ab30
MAINT: matplotlib is in requierements.txt
2013-10-02 18:14:20 +02:00
François Boulogne
f82db28565
MAINT: unused import
2013-10-02 18:14:20 +02:00
François Boulogne
741d6fda95
PEP8: comparison
2013-10-02 18:14:20 +02:00
Stefan van der Walt
27d1a5e70a
Merge pull request #750 from ahojnnes/misc
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Misc cleanups.
2013-10-02 08:57:33 -07:00
Johannes Schönberger
2459ca14a0
Fix deprecated function name in example
2013-10-02 17:57:20 +02:00
Johannes Schönberger
ee24f1c2c5
Improve example of warp function to show all available options
2013-10-02 17:45:05 +02:00
Johannes Schönberger
40f5e78353
Add support for matrix as inverse_map
2013-10-02 17:33:17 +02:00
Johannes Schönberger
9741bfda15
Add note about internal usage of transformation matrix
2013-10-02 17:17:03 +02:00
Johannes Schönberger
beeb597ddf
Only clip for ndimage.map_coordinates case
2013-10-02 17:10:46 +02:00
Johannes Schönberger
3e3a52331d
Misc doc string fixes
2013-10-02 17:07:23 +02:00
Johannes Schönberger
c3d40447f8
Remove call to deprecated is_gray function
2013-10-02 16:58:32 +02:00
Juan Nunez-Iglesias
5ea79d4301
Merge pull request #748 from ahojnnes/regionprops-dtype
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- Fix for regionprops dtype error (#747 ) and additional tests.
- Some docstring improvements.
2013-10-02 05:55:56 -07:00
Johannes Schönberger
78a849cc37
Fix dtype bug in perimeter
2013-10-02 14:16:24 +02:00
Johannes Schönberger
d7824000fe
Raise error for non 2-D images
2013-10-02 14:14:29 +02:00
Johannes Schönberger
c1ea012c9b
Add support for unsigned integer label images
2013-10-02 14:05:30 +02:00
Johannes Schönberger
99fb8b992e
Some improvements for perimeter
2013-10-02 13:55:52 +02:00
Johannes Schönberger
c414e96fcc
Merge pull request #746 from luispedro/master
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ENH Faster perimeter computation
2013-10-01 12:49:44 -07:00
Luis Pedro Coelho
ff0b315110
RFCT Simpler code for initializing array
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Also, replaced skimage.measures.histogram by np.bincount.
Both changes were suggested in the pull request discussion by Juan
Nunez-Iglesias (jni):
https://github.com/scikit-image/scikit-image/pull/746
2013-10-01 15:19:42 +02:00
Luis Pedro Coelho
f81fbf5b25
ENH Faster perimeter computation
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Measured a 30% speedup on a 640x640 image. Fundamentally, this makes
fewer passes over the image; so it should never be worse that the
previous implementation.
2013-10-01 13:07:17 +02:00
Tony S Yu
4ab166bba4
Merge pull request #726 from jni/fix-relabel-doc
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Fix errors in relabel_from_one docs; PEP8
2013-09-29 16:03:56 -07:00
Juan Nunez-Iglesias
477c80d409
Merge pull request #740 from ahojnnes/warp-fix
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Fix doc string of warp functions
2013-09-28 06:24:14 -07:00
Johannes Schönberger
c01e7c9b10
Fix various doc strings using the warp function
2013-09-28 14:39:40 +02:00
Johannes Schönberger
a17a1395c3
Fix doc string of warp functions
2013-09-28 14:25:45 +02:00
Juan Nunez-Iglesias
610b22b4a9
Merge pull request #719 from ahojnnes/slic
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This PR:
- speeds up SLIC while reducing memory usage,
- closes #717 ,
- adds support for a voxel spacing argument for anisotropic images,
- removes default gaussian blurring,
- removes "magic" guessing whether input was multichannel.
2013-09-27 04:46:59 -07:00
Johannes Schönberger
8fb6fd02a0
Scale sigma only in scalar case
2013-09-26 16:52:58 +02:00
Johannes Schönberger
845d083470
Define 1d arrays as contiguous
2013-09-22 07:22:09 +02:00
Juan Nunez-Iglesias
54530d16f6
Update snippets in notes to use double backticks
2013-09-22 13:37:04 +10:00
Johannes Schönberger
d194118766
Merge pull request #733 from riaanvddool/contribution-riaanvddool
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Forgotten contribution by riaanvddool: skimage.io plugin - GDAL
2013-09-20 10:48:01 -07:00
Riaan van den Dool
c540ef11c9
Forgotten contribution by riaanvddool: skimage.io plugin - GDAL
2013-09-20 19:14:10 +02:00
Johannes Schönberger
b3d4409be9
Merge pull request #7 from jni/slic-cython-docstring
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Slic cython docstring
2013-09-20 07:55:33 -07:00
Juan Nunez-Iglesias
e17e7699b3
Add note about (z, y, x) order in slic cython doc
2013-09-21 00:12:12 +10:00
Johannes Schönberger
a086f03f39
Document default value API change
2013-09-19 08:36:56 +02:00
Johannes Schönberger
52f01d1f85
Merge pull request #731 from ankit-maverick/SimilarityTransform
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Correcting a bug in SimialarityTransform
2013-09-18 22:57:05 -07:00
Ankit Agrawal
0ed1e22034
Correcting bug in SimialarityTransform
2013-09-19 10:23:03 +05:30
Johannes Schönberger
607ac235af
Merge pull request #6 from jni/slic-speed-spacing
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Slic speed spacing
2013-09-16 10:00:18 -07:00
Juan Nunez-Iglesias
05fbc3fbfc
Bug fix: typo: wrote spacing instead of sigma
2013-09-16 22:42:48 +10:00
Juan Nunez-Iglesias
00e5ff263b
Add spacing descriptions; use np.double
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Implement @ahojnnes's comments on pull request. Use `np.double` as
dtype for arrays because in Cython, `float` is not `np.double`. And
add further clarification about the `spacing` parameter.
2013-09-16 21:26:44 +10:00
Juan Nunez-Iglesias
846765e5f9
Add spacing support for new, speeded-up SLIC
2013-09-16 17:52:25 +10:00
Johannes Schönberger