Commit Graph

944 Commits

Author SHA1 Message Date
Neil Yager 59ff9218b4 DOC: Added latex formulas to docstring 2011-11-21 09:51:20 +00:00
Neil Yager 1661015af1 ENH: Added a gallery example of GLCM textures 2011-11-21 09:51:20 +00:00
Neil Yager cd8524b93d ENH: Compute some standard propertices for GLCMs 2011-11-21 09:51:20 +00:00
Neil Yager 4fe7965f69 NF: Initial commit of greylevel co-occurance (pure python) 2011-11-21 09:51:20 +00:00
Stefan van der Walt 4fbdeb4b41 Merge pull request #79 from zachrahan/mcp-64bit
BUG: Fix MCP indexing types on 64-bit systems (closes #72).
2011-11-17 12:21:42 -08:00
tonysyu 31db8f16ce Merge pull request #81 from NeilYager/neil_yager-io_fix
Merge NeilYager's import io fix
2011-11-11 08:20:28 -08:00
Neil Yager 66befec0ee BUG: Problem importing imread 2011-11-11 12:39:55 +00:00
Zach Pincus 9307bcb5bc fix _spath error 2011-11-08 15:19:12 -05:00
Stefan van der Walt cc7a544122 BUG: data: Fix chessboard file name. 2011-11-07 14:48:10 -08:00
Stefan van der Walt 989fd6673e ENH: Add verbose test function. 2011-11-07 14:45:26 -08:00
Zach Pincus 4cf55a2702 Fix another 64-bit corner case
Fix a bug for particularly huge images that have strides > 2**31 in any
dimension.
2011-11-07 17:06:59 -05:00
Zach Pincus ea63e7d709 use 64-bit safe types 2011-11-07 15:51:39 -05:00
Stefan van der Walt 0b124c34e2 DOC: See also to skimage.sobel instead of ndimage.sobel. 2011-11-07 11:25:28 -08:00
Stefan van der Walt 28028dc2cd Merge pull request #78 from emmanuelle/doc_canny
DOC: Canny filter. Improved docstring + example for the gallery.
2011-11-07 11:23:54 -08:00
emmanuelle 78d37d3af1 DOC: Canny filter. Improved docstring + example for the gallery 2011-11-06 23:52:07 +01:00
Stefan van der Walt 4c88f94508 Merge pull request #74 from stefanv/cython_hash
ENH: Use MD5 hashes of .pyx files to determine whether they need to be recompiled.
2011-11-02 09:47:20 -07:00
Stefan van der Walt 57294c2ff9 ENH: Use hashes of .pyx files to see whether re-compilation is needed or not. 2011-11-02 09:46:13 -07:00
Stefan van der Walt e7f0fe9ba8 Merge pull request #75 from stefanv/convex_hull
ENH: Add binary convex hull computation.
2011-11-02 09:41:45 -07:00
Stefan van der Walt 3495767358 ENH: Rename convex_hull to convex_hull_image to allow later clean API addition of convex_hull with labels. 2011-11-02 09:38:54 -07:00
Stefan van der Walt 9aeb79fe69 Merge pull request #76 from stefanv/coins
ENH: Add coins image.
2011-11-02 09:32:56 -07:00
Thouis (Ray) Jones 061595f99d Fix docstring to match new default value and constraint for radius. 2011-11-02 15:09:02 +01:00
Stefan van der Walt f19fb68d31 DOC: Update tasks with a link to a free qhull implementation. 2011-10-28 18:21:42 -07:00
Stefan van der Walt 7ea6a37634 Update test data set descriptions. Convert 'coins' to grey-level image. 2011-10-28 15:19:39 -07:00
Stefan van der Walt 33469fa69e BUG: Allow test suite to pass with scipy < 0.9. 2011-10-28 14:56:41 -07:00
Stefan van der Walt 2191d29611 ENH: In test, do not compute hull twice. 2011-10-28 14:36:05 -07:00
Neil Yager 45ee2e1323 BUG: Fix failing test_homography unit test. 2011-10-27 19:37:09 -07:00
Stefan van der Walt 3892d5b3ae DOC: Add url for convex hull algorithm overview. 2011-10-27 17:36:00 -07:00
Stefan van der Walt c0fa6278f7 DOC: Update tasks list. 2011-10-27 17:19:23 -07:00
Stefan van der Walt 10a315ed8e Merge pull request #73 from tonysyu/fix-ctmf
BUG: Force median filter parameters to be valid.
2011-10-27 16:59:17 -07:00
Stefan van der Walt 09021dbd83 PKG: Move io to _io (closes #39). 2011-10-27 16:08:21 -07:00
Tony S Yu 2c61928aa6 DOC: Add note about changed arguments for median_filter 2011-10-27 09:22:53 -04:00
Stefan van der Walt 9510e72f1c Merge pull request #77 from NeilYager/neil_yager-homography-docstring
DOC: Homography docstring update.
2011-10-27 02:00:15 -07:00
Neil Yager 585c1346c8 Homography docstring update 2011-10-27 09:39:03 +01:00
Stefan van der Walt b34b9d8ddd ENH: Only perform convex hull on select candidate pixels. Gets us a factor 30 speedup. 2011-10-26 23:17:00 -07:00
Stefan van der Walt 74f7e01e42 ENH: Improve convex_hull execution speed. 2011-10-26 19:55:46 -07:00
Stefan van der Walt 6bbeda04f3 ENH: Pre-allocate coordinate corner array. 2011-10-26 19:37:34 -07:00
Stefan van der Walt 0b32676094 DOC: Better docstring for coins. 2011-10-26 18:23:27 -07:00
Stefan van der Walt fdac2489e9 ENH: Add coins image. 2011-10-26 17:59:43 -07:00
Stefan van der Walt b5ad567a68 ENH: Add binary convex hull computation. 2011-10-26 17:43:30 -07:00
Tony S Yu c6e854b7c7 Switch radius and mask arguments for median_filter 2011-10-26 16:30:07 -04:00
Tony S Yu a63e3f4546 Require median filter radius >= 2
The octagon structuring element used by _ctmf.pyx does not scale correctly for smaller radii.
2011-10-26 16:22:20 -04:00
Stefan van der Walt 573e208361 Merge pull request #67 from NeilYager/neil_yager-alpha
BUG: Ignore alpha channel when opening RGBA image as grayscale.
2011-10-25 01:02:53 -07:00
Neil Yager d56ae9631c Bug fix: Ignore alpha channel when opening RGBA image as grayscale 2011-10-25 08:52:13 +01:00
Stefan van der Walt 0b8452fa8e Merge Emmanuelle's port of CellProfiler's medial axis skeletonization. 2011-10-24 17:24:11 -07:00
Stefan van der Walt f8a51a4e3e DOC: Minor spacing fixes in docstrings. 2011-10-24 17:23:39 -07:00
emmanuelle 39a0e3577c scikits/image -> skimage in examples 2011-10-24 23:28:21 +02:00
emmanuelle 25e986d545 Moved cython file that had not been automaticall moved by rename
scikits/image -> skimage
2011-10-24 23:27:29 +02:00
emmanuelle ed1f05427e ENH address comments on PR #65 made by Stefan and Neil 2011-10-24 23:23:52 +02:00
emmanuelle 736802bad4 Medial axis transform (skeletonization) from cell profiler
* medial_axis function in morphology.skeletonize
 * plot_medial_axis.py example for the gallery

Compared to the skeletonize algorithm in morphology.skeletonize,
medial_axis is faster because it processes all pixel in one pass.
However, the resulting skeleton has more branches, that may be unwanted
depending on the application.
2011-10-24 23:22:58 +02:00
emmanuelle 0f31034a46 First integration of cell profiler medial axis transform
(skeletonization in cell profiler)
2011-10-24 23:22:58 +02:00