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Author SHA1 Message Date
spotter 6f7158046f FIX: combine_stains docstring. 2013-03-12 16:41:02 +01:00
spotter b3e557b550 FIX: using the new stain separation functions for the special case of hed. 2013-03-12 16:19:51 +01:00
spotter c43986d6d6 ENH: Adding tests for new stain separation functions. 2013-03-12 16:15:41 +01:00
spotter f48097c5ca FIX: fixed docstrings. ENH: Added new stain separation matrices. 2013-03-12 16:06:32 +01:00
spotter 20f27345c3 FIX: rgb2hed and hed2rgb can work with both signed and unsigned image. 2013-03-12 14:22:53 +01:00
Xavier Moles Lopez 0fd2f355b2 FIX: Link to Ruifrok reference 2013-03-11 21:02:24 +01:00
spotter 5b25e7e961 FIX: Replaced non-ascii double quotes in Ruifrok reference. 2013-03-09 13:23:36 +01:00
spotter f66c8b5e3b ENH: Added example to the gallery for ihc staining separation 2013-03-08 15:59:40 +01:00
spotter 7c371e1662 FIX: img_as_ubyte function threw ValueError due to floating point errors in hed2rgb function. 
Clipping the output of the hed2rgb function between 0 and 1 seems to correct
the bug without affecting the conversion quality.
 2013-03-08 12:58:22 +01:00
spotter 7439fe96e8 FIX: Testing for ubyte and float images. Input dtypes are converted beforehand. 2013-03-07 00:14:06 +01:00
Xavier Moles Lopez 0a6b72bfe4 FIX: Fixed test_hed_rgb_roundtrip. 2013-03-04 12:15:35 +01:00
Xavier Moles Lopez 7f5b331f22 FIX: import rgb2hed and hed2rgb in the test_colorconv script. 2013-03-04 12:04:44 +01:00
Xavier Moles Lopez e4629ed856 FIX: modified color.data.ihc docstring. 2013-03-04 11:45:58 +01:00
Xavier Moles Lopez 40e7aee4de FIX: Ran autopep8 on colorconv.py FIX: modified color.data.ihc function FIX: smaller ihc.jpg image 2013-03-04 10:50:17 +01:00
spotter 85b1795cdb FIX: Removed unused dependency 2013-03-01 12:17:15 +01:00
spotter 3e6e690590 ENH: Added a short test to validate rgb2hed and hed2rgb conversion 2013-03-01 11:50:10 +01:00
spotter b065580c0a FIX: Simplified deconvolution equations 2013-03-01 11:49:23 +01:00
spotter 74b37dbb05 ENH: Added rgb2hed and hed2rgb to __all__ list 2013-02-28 16:26:57 +01:00
spotter 997870ce23 FIX: the rgb2hed function. Legal issues regarding the ihc image. ENH: added the hed2rgb function. 2013-02-28 16:15:15 +01:00
spotter 306c886ad6 ENH: Added an Immunohistochemical image example 2013-02-26 17:26:12 +01:00
spotter ae685075e1 ENH: Adding color deconvolution method to convert to an Haematoxylin-Eosin-DAB colorspace 2013-02-26 16:25:42 +01:00
Johannes Schönberger 590784d9a3 Merge pull request #417 from stefanv/msvc_build_fix 
PKG: MSVC build fixes by Christoph Gohlke.
 2013-02-25 13:22:46 -08:00
Stefan van der Walt 00c023d814 Merge remote-tracking branch 'cgohlke/patch-2' into msvc_build_fix 
Conflicts:
	skimage/filter/rank/_crank16.pyx
	skimage/filter/rank/_crank8.pyx
 2013-02-25 09:20:05 +02:00
Stefan van der Walt a17d8182aa PKG: MSVC build fixes by Christoph Gohlke. 2013-02-25 06:52:04 +02:00
Stefan van der Walt b0a01698b3 Merge pull request #434 from ahojnnes/ssize_t-note 
DOC: Add note about proper use of Py_ssize_t.
 2013-02-24 12:08:39 -08:00
Stefan van der Walt 746d9f6b36 Merge pull request #435 from ahojnnes/cnp 
RF: Globally change np to cnp if cimported.
 2013-02-24 11:55:32 -08:00
Johannes Schönberger 8532a0e432 Merge pull request #436 from sciunto/docstring 
Docstring circle + ellipse
 2013-02-24 09:22:55 -08:00
Christoph Gohlke 2e230c70c0 Use log(2) instead of log10(2) 2013-02-24 09:01:09 -08:00
Christoph Gohlke 27b837b799 Use log(2) instead of log10(2) 2013-02-24 08:57:53 -08:00
François Boulogne 19e69e94c1 Docstring circle + ellipse 2013-02-24 16:42:37 +01:00
Johannes Schönberger 21d480c32c Fix accidentially changed doc strings 2013-02-24 14:20:02 +01:00
Johannes Schönberger 62d83ad42c Globally change np to cnp if cimported 2013-02-24 14:14:14 +01:00
Johannes Schönberger a9ec085cc4 Add note about proper use of Py_ssize_t 2013-02-24 12:22:24 +01:00
Stefan van der Walt 729b311efb Merge pull request #421 from thewtex/SimpleITK_io 
ENH: Add SimpleITK IO plugin.
 2013-02-24 01:35:28 -08:00
Stefan van der Walt caf50619f0 Merge pull request #424 from ahojnnes/ssize_t 
RF: Globally change all index variables to ssize_t.
 2013-02-24 01:27:45 -08:00
Johannes Schönberger b716d8b1ed Wrap lines 2013-02-22 17:05:39 +01:00
Johannes Schönberger 6cb47a6e3b Make list of zip in Python 3 explicitely 2013-02-22 17:05:39 +01:00
Johannes Schönberger aedd12faeb Remove unused imports 2013-02-22 17:05:39 +01:00
Johannes Schönberger 2d9c211cf2 Remove unused CAPI numpy import and extend cython directives 2013-02-22 17:05:39 +01:00
Johannes Schönberger 572000f0e2 Improve code layout of probabilistic hough 2013-02-22 17:05:39 +01:00
Johannes Schönberger 52e3436f61 Fix integer type bugs in feature detection algorithms 2013-02-22 17:05:39 +01:00
Johannes Schönberger 3125e63fce Improve performance and type usage for GLCM loop 2013-02-22 17:05:39 +01:00
Johannes Schönberger cf09c582b6 Fix index type error in GLCM 2013-02-22 17:05:39 +01:00
Johannes Schönberger 7e578b5dec Fix index type error in SLIC function 2013-02-22 17:05:39 +01:00
Johannes Schönberger 983cb76319 Remove print statement 2013-02-22 17:05:39 +01:00
Johannes Schönberger a68be842ab Fix index type errors in draw module 2013-02-22 17:05:38 +01:00
Johannes Schönberger 614023b941 Replace ssize_t with Py_ssize_t globally 2013-02-22 17:05:38 +01:00
Johannes Schönberger 2c90aa70e5 Use np.intp rather than ssize_t for ndarrays 2013-02-22 17:05:11 +01:00
Johannes Schönberger 2957cb873b Change type to ssize_t for all index and size variables 2013-02-22 17:05:11 +01:00
Johannes Schönberger 9f55fa2112 Change type to ssize_t for all index and size variables 2013-02-22 17:05:10 +01:00