73d9ee9b61
Lazily import nose for testing, makes skimge load in 1/3 time.
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STY: Fixed indent on docstring.
STY: Added newline at the end of file
STY: Use original indention
2012-12-15 07:43:59 -06:00
56ddd129e3
Merge pull request #388 from ahojnnes/umfpack-warning
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ENH: Suppress UMFpack warning on random walker import.
2012-12-10 19:10:34 -08:00
33c58ad854
Fix some doc string formatting issues of random walker
2012-12-09 23:19:42 +01:00
a410f1c47e
UmfPack warning is now only raised if random walker is explicitly called
2012-12-09 23:17:06 +01:00
a6042bb0f3
Merge pull request #387 from ahojnnes/peak-det
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Fix confused parameters in doc string of peak_local_max
2012-12-09 09:37:33 -08:00
bd9dab0092
Merge pull request #386 from ahojnnes/dependecy-check
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Fix dependency check in setup
2012-12-09 09:35:48 -08:00
81c01eac0f
Fix confused parameters in doc string of peak_local_max
2012-12-09 17:39:15 +01:00
fbf51a9508
Fix dependency check in setup
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Previous version failed when there were characters other than digits or dots.
2012-12-09 16:33:17 +01:00
95f7177708
Merge pull request #376 from JDWarner/unify_peak_finder_backend
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ENH: Unify peak finder backend.
2012-12-08 20:36:18 -08:00
5cba69a4fa
test: add additional tests for 100% coverage of new peak_local_max
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Also fix minor bug in label reordering.
2012-12-08 21:12:26 -06:00
4f68f1cd36
doc: fix and clarify peak_local_max docstring
2012-12-03 20:23:01 -06:00
50c0399aa7
Merge pull request #379 from cpsaltis/fix_rotate
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Fix resize argument handling in rotate.
2012-12-03 14:48:52 -08:00
55b4a1e70e
Merge pull request #383 from stefanv/windowserror
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BUG: WindowsError not defined under Linux.
2012-12-03 10:01:08 -08:00
68c2ab205e
BUG: WindowsError not defined under Linux.
2012-12-03 08:49:35 -08:00
099b94efa1
Merge pull request #375 from ahojnnes/hough-peak-example
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Add example for hough_peaks function
2012-12-03 06:35:47 -08:00
298abe1ac0
Add test for resize option in rotate
2012-12-03 15:54:26 +02:00
49e06c9755
Add title to hough peak detection example plot
2012-12-03 14:37:26 +01:00
989d1de598
Merge pull request #380 from tonysyu/mark-boundaries-regression
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Make black the default boundary color for mark_boundaries.
2012-12-02 23:20:01 -08:00
bf28a38f6e
ENH: Make black the default boundary color for mark_boundaries.
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This improves visibility in light-colored image regions. Note also that the new behavior matches the behavior from the 0.7 release.
2012-12-02 16:02:27 -05:00
22f94d8707
Fix resize argument handling in rotate.
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It used to have exactly the opposite effect that it supposed to.
2012-12-01 12:30:40 +02:00
98ce475113
style: initialize out at beginning of function
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* remove API compatibility comment
* remove unnecessary `del maskim`
2012-11-25 23:09:06 -06:00
45a91aa9c5
doc: deprecated string and docstring formatting fixes in is_local_maximum
2012-11-25 22:56:45 -06:00
d2262227d9
BUG - rank_order now imported.
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Also changed (peak.py):
* Standardized documentation as requested.
* Removed `threshold` as an optional kwarg.
* Removed extra line break incorrect by PEP8 standards.
Also changed (watershed.py):
* Added @deprecated decorator and import statement
2012-11-24 17:24:14 -06:00
a77923fe4c
Merge pull request #373 from luispedro/imread_io_plugin
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ENH: Add imread io plugin.
2012-11-24 11:07:52 -08:00
38f699471e
TST Remove unneeded test
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Per stefanv's comment on github, this was testing functionality higher
up in skimage.io
2012-11-24 19:04:55 +00:00
1f84c5e35f
DOC Add myself to CONTRIBUTORS.txt
2012-11-24 19:04:43 +00:00
10ce9b89ab
RFCT Use skimage.utils.convert for type conversion
2012-11-24 19:04:16 +00:00
6ebc43bad8
ENH Add imread io plugin
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This relies on imread (https://github.com/luispedro/imread ) which
supports a few microscopy formats otherwise hard to read (LSM and
MetaMorph STK) as well as basic ones.
2012-11-24 19:04:01 +00:00
e7288f9140
BUG - Dtype conversion to Boolean in a new code path not included in current tests.
2012-11-20 01:17:42 -06:00
da5a2a8221
BUG - Now parsing all unique labels != 0 properly, and set threshold_rel=0 in is_local_maximum() wrapper.
2012-11-20 01:11:31 -06:00
233b368195
BUG - Fixed a bug where the image was not properly masked for each unique label.
2012-11-20 00:45:01 -06:00
33c9514062
BUG - Fixed a bug where, when indices = False, output was not Boolean.
2012-11-20 00:36:12 -06:00
226eaaff92
FEAT - Unified peak finder backend
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Detailed changelist:
* Fully documented new API for peak_local_max()
* Removed commented-out old code for is_local_maximum()
* Added "See also" and "Notes" to is_local_maximum() redirecting to peak_local_max()
2012-11-20 00:12:47 -06:00
63b5c5a4a0
FEAT - combined API from is_local_maximum() into peak_local_max()
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is_local_maximum() is a wrapper function for peak_local_max()
is_local_maximum() runs much faster (~20% of prior runtime, nearly = to peak_local_max())
All tests in .feature and .morphology subpackages pass as written with these changes.
Todo:
* Fully document API
* remove commented-out old algorithm in is_local_maximum()
* add new tests for full coverage of new, more complex peak_local_max()
2012-11-19 23:38:58 -06:00
a7527adf31
Add example for hough_peaks function
2012-11-17 22:27:11 +01:00
13c61b9694
Merge pull request #361 from ahojnnes/hough-peaks
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Add hough transform peak detection
2012-11-17 07:30:08 -08:00
2df0cdb443
Merge pull request #374 from tonysyu/add-rank-to-bentoinfo
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Add rank extensions to bento.info
2012-11-15 00:42:53 -08:00
d6a0b08859
ENH: Add filter.rank extensions to bento.info
2012-11-14 20:46:47 -05:00
2a8466a549
ENH: Compare full paths of cython extensions.
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If setup.py defined an extension in a subdirectory, the extension name in bento.info didn't match the one found in setup.py. Comparing the full extension path fixes the issue.
2012-11-14 20:43:52 -05:00
22a73fc0cb
BUG: Adapt to whitespace in text search
2012-11-14 20:08:16 -05:00
80a9a5aba5
Apply numpy reference style to rank filter descriptions
2012-11-14 08:33:27 +01:00
2403bee27c
Merge pull request #348 from odebeir/rank_filters
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Rank filters
2012-11-13 23:30:12 -08:00
70f2b67ef7
fix: ref and test_otsu doc
2012-11-14 08:00:59 +01:00
698d6ae13f
fix:< Py_ssize_t > 0 and & pop
2012-11-13 17:07:21 +01:00
411d4686d5
fix:wrap lines in tests
2012-11-13 17:02:08 +01:00
f133158792
autopep8 for plot_* and rank sources
2012-11-13 09:37:58 +01:00
114f3a84f3
Merge pull request #2 from ahojnnes/rank-filters
2012-11-12 22:25:27 -08:00
af55d712ee
PEP8 fixes for long rank filter example
2012-11-12 20:10:56 +01:00
4a0b22aff5
Use common spelling for greylevel
2012-11-12 20:07:02 +01:00
d0d5df0d68
Improve description of long rank filter example
2012-11-12 20:04:42 +01:00
Steven Silvester