879a7b0bb5
Update treatment of convert2lab in slic
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It still defaults to `True` but only when the last dimension of the
input array could be construed as RGB.
Also, update ValueError description in docstring.
2015-01-16 13:11:25 +11:00
c102a0bf0e
Add reference to SLIC0 in SLIC docstring
2015-01-16 12:08:13 +11:00
c3ccb60bda
Merge pull request #1300 from jni/io-imshow-data
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WIP: overhaul matplotlib imshow plugin for new data policy
2015-01-15 18:39:05 -06:00
61d9812cd8
Don't create superfluous ip variable
2015-01-15 23:31:51 +11:00
5d115209b5
Create new figure for each imshow test
2015-01-15 23:07:09 +11:00
7b2dbcb15b
Expand the docstring for imshow
2015-01-15 22:39:50 +11:00
c6dff6942d
Don't create new plot automatically
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This behavior is a bit too magical and may interfere with creation of
interactive ImageCollection browsers, for example.
2015-01-15 22:26:55 +11:00
e472009090
Add test for signed images
2015-01-15 22:26:17 +11:00
2bdd239496
Overhaul imshow to clarify flow
2015-01-15 22:25:41 +11:00
30c522e706
Use different colormaps depending on input image
2015-01-15 20:16:24 +11:00
400c3fd202
Rename ax to ax_im in mpl imshow plugin
2015-01-15 15:44:55 +11:00
9fe4f33793
Add tests for nonstandard images
2015-01-14 20:29:15 +11:00
176889933f
Add tests for io.imshow mpl plugin
2015-01-14 20:13:32 +11:00
984e22b47a
Replace Axes with AxesImage where relevant
2015-01-14 20:13:32 +11:00
fab4ff2305
Fix incorrect call to colorbar
2015-01-14 20:13:32 +11:00
c68c8e5468
Improve mpl imshow plugin docstring
2015-01-14 20:13:32 +11:00
fac8fde9dc
Overhaul matplotlib imshow plugin
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- images are displayed within their native dtype range,
- unless they are outside of their range (e.g. a float image with
values greater than 1) or they are of an unsupported dtype (e.g.
a uint64 image), in which case the dynamic range of the display
corresponds to the image range,
- which is also done for images with extremely low contrast for their
native range (e.g. float images in [1e-7, 5e-7].
In the latter two cases, a colorbar is also displayed and a warning is
raised.
Finally, we return the axes object on which the image is plotted, to
enable further plotting in the matplotlib new OO style.
2015-01-14 20:13:32 +11:00
8f4d0247b5
Add docstring to matplotlib imshow plugin
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The image is now named as an argument, and the axes are returned, in
keeping with matplotlib convention.
2015-01-14 20:13:32 +11:00
e030e8c4c6
Merge pull request #1337 from jni/fix-label2rgb
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Fix `label2rgb` by adding default background color
2015-01-13 16:08:40 -08:00
eab2168846
Add test to ensure default bg_color in label2rgb
2015-01-14 10:05:22 +11:00
9438b96774
Add default bg_color to label2rgb
2015-01-14 09:59:15 +11:00
d24ce2b4ab
Merge pull request #1328 from pratapvardhan/misc-doc
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DOC: Update bootstrap sphnix links
2015-01-01 19:28:23 -06:00
d3f2d11230
DOC: Update bootstrap sphnix links
2014-12-28 16:26:27 +05:30
f89ab053e1
Merge pull request #1314 from SalvatoreScaramuzzino/RectTool_docs
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Rect tool docs
2014-12-27 11:01:08 -06:00
6f1eb316d2
Merge pull request #1325 from blink1073/remove-label-shim
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Remove unnecessary `measure.label` shim
2014-12-27 15:21:59 +11:00
b7f4f61ae7
Remove unnecessary measure.label shim
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Conflicts:
skimage/measure/_label.py
2014-12-26 21:34:33 -06:00
7b5dd3b700
Merge pull request #1313 from blink1073/suppress-test-warnings
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Handle expected test warnings.
2014-12-27 14:26:59 +11:00
ecc582193a
Try using matplotlib cleanup decorator
2014-12-26 20:55:44 -06:00
a7a84bbcde
Draw the canvas when creating the ax to avoid RuntimeError
2014-12-26 20:14:41 -06:00
f898bd0209
Style fixes
2014-12-26 11:26:30 -06:00
9c2807ac01
Merge pull request #1321 from ahojnnes/hough
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Use typed memoryviews in Hough Transform
2014-12-27 00:38:38 +11:00
ac52af7d83
removed numpy import and spaces
2014-12-26 12:12:15 +01:00
0c2773b9e4
Use typed memoryviews
2014-12-26 11:08:05 +01:00
d28ae513ca
Travis auto-build Doctest skipped to avoid window opening
2014-12-26 10:37:03 +01:00
736f5658bc
Fix indent in docstring example
2014-12-25 17:08:36 -06:00
d760c0adda
Fix scipy.sparse.sparsetools warning
2014-12-24 11:20:52 -06:00
bea57315fb
Update docstring and fix pyamg warning check
2014-12-24 09:10:11 -06:00
23ae571689
Fix final failing test on Py2.6 build
2014-12-24 08:49:51 -06:00
2e0deb9595
Fix syntax error and missing | operator
2014-12-24 07:47:05 -06:00
d37ccca598
Fix Py2.7 build errors
2014-12-24 06:54:56 -06:00
4453120d96
Allow warnings in the minimum build
2014-12-24 06:36:04 -06:00
2a6b4ccaea
Import scipy.sparse in setup_test
2014-12-24 06:34:13 -06:00
cb2745cfdf
Change default neighbors to None
2014-12-24 05:57:37 -06:00
3829401e9f
Fix label wrapper function
2014-12-23 21:20:23 -06:00
2d3ada19e5
Allow for no exceptions to be raised and cleanup
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Allow for no exceptions to be raised
Add some helpful comments
Remove doctest skips
Remove TODO note
Cleanup and skip failing doctest
2014-12-23 16:51:18 -06:00
c0a0490eed
Fix handling of multiple warnings and update tests
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Fix handling of multiple warnings
Update all test __init__ files
Update segmentation pkg
Update the color pkg
Update the exposure pkg
Update the filters pkg
Update the io pkg
Update the measure pkg
Update morphology package
Restructure test setup function
Add expected_warnings to __all__
Update restoration pkg.
Remove explicit filter check since it is done elsewhere
Fix the image test helpers
Update the transform pkg
Fix util pkg
Update viewer pkg
2014-12-23 16:51:06 -06:00
01ca1d17c8
Add a random seed to the setup
2014-12-23 16:51:04 -06:00
1b905d4cef
More cleanup and updating of tests
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Clean up setup_test and add a teardown_test method
Implement new setup/teardown in novice tests
Fix warning handling in pil_plugin
Update rank tests
2014-12-23 16:50:50 -06:00
a4e4e57ba5
Create new expected_warnings helper and some cleanup
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Add new helper function for expected warnings during test
Indentation cleanups and avoid skipping doctests if possible.
2014-12-23 16:50:18 -06:00
782ba46a4c
Handle more warnings
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Punt on the issue of warnings with the minimum build
Handle warnings in measure pkg
Fix the rank filter test by forcing a random seed in the function
Compare as boolean in imread test
Import loadmat in test_setup to avoid warning
Use a setup method for imread plugin test
Revoke unintended changes
Fix indentation to appease jni
More indentation fixes
Fix unintentional comment out
2014-12-23 16:49:59 -06:00
Juan Nunez-Iglesias