8beb2ae605
Yen PEP8 and docstrings
2013-09-07 19:10:40 +03:00
e41887c66d
Codestyle improvement
2013-09-07 19:10:40 +03:00
a315ae718d
Add Yen threshold method
2013-09-07 18:48:46 +03:00
8ed56abb42
Merge pull request #469 from JDWarner/add_marching_cubes
...
3D Marching Cubes
2013-09-03 04:55:29 -07:00
d2bc02c10b
Credit myself for Marching Cubes
2013-09-02 20:23:00 -05:00
abc7a16a80
STYLE: Use np.array instead of np.r_ and import Poly3DCollection
2013-09-02 15:31:51 -05:00
b5806d18ba
Merge pull request #722 from stefanv/shape_step
...
Add skip parameter to `view_as_windows`.
2013-09-02 00:10:32 -07:00
1174d6fbc5
FIX: Errors in unit tests
2013-09-01 22:05:39 -05:00
cd306bad57
FIX: Add _marching_cubes_cy.pyx to bento.info
2013-09-01 21:53:01 -05:00
50d73fdd62
TEST: Add test suite for draw3d (ellipsoid/ellipsoid_stats)
2013-09-01 21:31:53 -05:00
c678fa55f4
DOC: Add concise marching cubes example to gallery using Matplotlib
2013-09-01 20:52:06 -05:00
14a0685838
MAINT: Refactor ellipsoid generator into skimage.draw
2013-09-01 20:51:20 -05:00
d0d9fee36e
DOC: Minor documentation formatting fixes in marching cubes
2013-09-01 20:49:58 -05:00
b0d3b92e74
Add skip parameter to view_as_windows.
2013-09-01 23:50:54 +02:00
a401cb8d9d
Merge pull request #721 from ahojnnes/travis
...
Remove unnecessary mirror option.
2013-09-01 07:45:05 -07:00
74b932e1be
Remove unnecessary mirror option
2013-09-01 16:03:14 +02:00
586a7c9087
Merge pull request #720 from michaelaye/patch-1
...
removing some unused selem declarations
2013-08-31 23:31:45 -07:00
1bcc2b418a
removing some unused selem declarations
2013-08-31 22:48:49 -07:00
997339beae
FEAT: add tests for marching cubes and mesh surface area
2013-08-30 12:36:32 -05:00
b6f25906d6
DOCFIX: clarify docstrings and output vertex dimension ordering
2013-08-30 12:36:31 -05:00
19b8831a0d
FIX: incorrect name for unpack_unique_verts, revert axis ordering
2013-08-30 12:36:31 -05:00
fcd20e5660
FIX: use memoryviews, docfix, and change tri_list to face_list
2013-08-30 12:36:31 -05:00
164b416bd9
FIX: volume now directly cast, docfixes, C-contiguous ordering
2013-08-30 12:36:31 -05:00
f8cc4799da
FIX: dimension ordering now correct (x, y, z)
2013-08-30 12:36:31 -05:00
165de870d0
fix error in triangulation of case 120
2013-08-30 12:36:31 -05:00
296d102047
fix: symmetric ambiguous dual-plane cases require special treatment
2013-08-30 12:36:31 -05:00
44c04996c7
move unpack_unique_verts to Cython for speed
2013-08-30 12:36:31 -05:00
d2e51aa035
fix import error from _marching_cubes_cy
2013-08-30 12:36:31 -05:00
9a86aba226
rename files to conform with naming conventions
2013-08-30 12:36:31 -05:00
9779cd5e4a
fix: bug in second _append_tris call in case 125
2013-08-30 12:36:31 -05:00
5b990a0856
fix import of _marching_cubes
2013-08-30 12:36:31 -05:00
855031ad47
add _marching_cubes.pyx to list of Cython modules to build
2013-08-30 12:36:30 -05:00
84618af7c7
import marching_cubes and mesh_surface_area
2013-08-30 12:36:30 -05:00
5eba5a42a7
FEAT: Full 3d anisotropic implementation of marching cubes
...
Also includes surface area calculation algorithm from
generated mesh.
Convenient output to visualize with `mayavi.mlab`.
Efficient Cython implementation.
2013-08-30 12:34:55 -05:00
55e42309b8
Merge pull request #712 from emmanuelle/gaussian_filter
...
Add a wrapper around `scipy.ndimage.gaussian_filter` with useful default behaviors.
2013-08-30 10:27:41 -07:00
9795d3fad4
Gaussian filter function: changed the default value of multichannel
...
Now we try to guess automatically whether the image is grayscale or RGB
2013-08-29 23:14:30 +02:00
b4242ca3fb
[BUG] iterable sigma and multichannel
...
+ docstring improvement
2013-08-25 16:41:37 +02:00
15b4a4d979
DOC: corrected description of multichannel parameter
2013-08-25 15:04:22 +02:00
d4eba562b8
Merge pull request #711 from sciunto/minordoc
...
DOC: Add titles to plots (watershed).
2013-08-25 05:59:44 -07:00
c68dab766e
DOC: add titles to plots
2013-08-25 14:52:30 +02:00
082586c10c
Added a wrapper around ndimage's Gaussian filter
...
This version of the Gaussian filter
* uses 'nearest' as the default boundary mode. This can be discussed,
but I had the impression that for images this is the most relevant
mode ('extending' boundaries)
* has a `multichannel` keyword, so that each color channel can be
filtered separately. For now no attempt is made at guessing whether
the image has color channels or not.
2013-08-25 14:50:55 +02:00
8757356a46
Merge pull request #638 from sciunto/contribute
...
DOC: Activate travis for a fork.
2013-08-25 05:22:13 -07:00
1a4ea5c970
Merge pull request #710 from jni/pyamg-depends
...
Add pyamg to the optional dependencies
2013-08-25 04:56:41 -07:00
4d80670925
Merge pull request #672 from jni/chull-fix
...
Convex hull fix
2013-08-25 04:48:20 -07:00
13e83be692
Update PyAMG URL (no longer in Google Code)
2013-08-25 12:44:19 +02:00
bd2a61baf8
Add PyAMG to the optional dependencies list
2013-08-25 12:42:12 +02:00
944b45ad69
DOC: this step seems to be useless
2013-08-25 12:01:35 +02:00
072eb7640a
Add docstring note explaining coord use case
2013-08-25 11:06:31 +02:00
cb28bba6ee
Add note describing array copy if discontiguous
2013-08-25 11:04:50 +02:00
0c2f0dc532
Review the procedure
2013-08-25 10:34:25 +02:00
radioxoma