a47a700fe7
TST: Faster test_multi_image unit tests.
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Unit tests in test_multi_image speed up by using a smaller gif file.
New file no_time_for_that_tiny.gif file created using:
gifsicle --resize 14x25 no_time_for_that.gif > no_time_for_that_tiny.gif
2015-07-11 12:35:03 -05:00
661b8e60c0
Merge pull request #1573 from jni/contributing-array-coords
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DOC: Add array coords and Cython-Python wrapping to new contributors guide
2015-07-11 00:10:42 -05:00
3ce57f244b
Merge pull request #1576 from belltailjp/fix-broken-link-to-daisy-implementation
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DOC: Fix broken hyperlink to daisy code
2015-07-04 11:38:37 -05:00
17a1121e42
Merge pull request #595 from TimSC/fasthog
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ENH: Fast, Cython based hog implementation
2015-07-04 10:49:56 -05:00
55f798109c
Fix a broken link to daisy code
2015-07-04 18:39:02 +09:00
0c58501dc7
Merge pull request #1572 from csachs/cython_skeletonize
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fast Cython based skeletonize implementation
2015-07-01 19:05:04 +10:00
360892c9de
Merge pull request #1553 from blink1073/tifffile-package
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FIX: Use files from tifffile 0.6.2 package
2015-06-30 16:22:46 -05:00
cba1cb1e1f
Add blank line after ref to keep Sphinx happy ;)
2015-07-01 00:47:19 +10:00
639a046611
fixed intra docstring reference links
2015-06-30 16:33:03 +02:00
eb8aaeb61d
Use Sphinx links to reference from contributing guide
2015-06-30 23:37:30 +10:00
2de03d018a
reordered code according to PEP8, modified docstring
2015-06-30 15:07:04 +02:00
e1afe7e65a
Ask contributors to wrap Cython functions in Python
2015-06-30 22:49:48 +10:00
f5bf1dd3b9
Point contributors to coordinate conventions
2015-06-30 22:49:21 +10:00
f54c254421
fixed docstrings, renamed variables for clarity, removed old skeletonize function body
2015-06-30 09:39:25 +02:00
5301a9a8e3
added faster, Cython based skeletonize function
2015-06-29 22:11:22 +02:00
6d63b80bb2
Merge pull request #1524 from bennlich/faster-skimage-draw-ellipse
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skimage.draw.ellipse speedups
2015-06-26 16:29:03 +10:00
9923aaddb0
Merge pull request #1568 from sciunto/threshold_li_fix
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attempt to fix #1567 (threshold_li should not modify the input image)
2015-06-26 01:24:27 +10:00
6f1e84de95
attempt to fix #1567
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add asseert_ND=2 to all threshold functions
Simpler writing, less cases
Fix variable name
2015-06-25 05:11:21 -04:00
23670b4f02
Explicitly cast upper_left and lower_right to ints
2015-06-24 08:46:57 -07:00
70a0ed58d5
Merge pull request #8 from ClinicalGraphics/fasthog
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Fasthog
2015-06-19 18:02:43 +01:00
cd30e010d5
Also added a nogil context manager to hoghistograms
2015-06-19 16:01:52 +02:00
691beaa59f
Adding nogil to cell_hog
2015-06-19 15:49:48 +02:00
8d31edb773
Merge pull request #7 from ClinicalGraphics/fasthog
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Fixed the lines that were failing the tests
2015-06-19 09:40:17 +01:00
51e683f665
I hadn't realized I was reusing cc in the loop, so it would crash after one iteration.
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And I had changed the second orientation, which probably wasn't correct
2015-06-19 08:51:54 +02:00
f426800439
Merge pull request #6 from ClinicalGraphics/fasthog
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Fasthog
2015-06-18 21:49:14 +01:00
167c8eeeb6
I hadn't realized when I changed orientations to an array, that its actually just an int and the original code said range(orientations), so I changed it to np.arange(orientations). Hopefully the tests will now pass again
2015-06-18 22:08:34 +02:00
2500c21b12
Converted orientation and magnitude to typed memory view. Also changed gradient_columns and gradient_rows, hopefully in the right way.
2015-06-18 22:07:28 +02:00
3d85503472
Renamed x to rows and y to columns, though I might have still missed it in some spots.
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Indented the long if statements and put continue on a new line
Precomputed the range start and stop values
Defined additional variables
2015-06-18 22:03:21 +02:00
bea9886a12
I noticed that cy+cy and cx+cx was repeated in the inner-most loop as well
2015-06-18 22:01:44 +02:00
be5f6fdc3f
Merge pull request #1562 from warmspringwinds/example_correction
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DOCFIX: Add missing visualization of MB-LBP plot
2015-06-18 12:47:24 -05:00
b980e7bb98
Use files from tifffile 0.6.2 package
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Use files from tifffile 0.6.0 package
Skip failing doctests
Skip failing doctests
Fix doctest skipping
Skip another doctest
Skip another doctest
Bump to tifffile 0.6.1 and add test
Use latest tifffile
Sync with 0.6.2
Skip doctests
Skip one more doctest
Another doctest skip
Use relative import in test
Fix import and failing doctest
2015-06-18 12:41:06 -05:00
7a2b0a70f5
Merge pull request #1459 from vighneshbirodkar/seam_carving
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FEAT: Seam Carving
2015-06-18 12:32:19 -05:00
83739644ec
Merge pull request #5 from ClinicalGraphics/fasthog
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Fasthog
2015-06-18 18:19:35 +01:00
ded652c2ab
Moved more computations out of loops and added division from future
2015-06-18 18:55:32 +02:00
f633262f03
Moved more variables out of the loops and modified the docstring
2015-06-18 18:50:34 +02:00
9c141eadf8
Extracted row_index and cell_row from the inner loop
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Defined constants that don't have to be recomputed several times
2015-06-18 18:45:29 +02:00
1b9a15a4d4
Made the indents line up with the (
2015-06-18 18:38:59 +02:00
2516844cbd
added missing visualization of the plot
2015-06-17 10:45:50 +02:00
91f74fd6c6
Merge pull request #1536 from warmspringwinds/mb-lbp
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FEAT: multi-block local binary patterns (MB-LBP)
2015-06-16 12:43:32 -05:00
85946c8eed
Changed return type to bint and improved code comments
2015-06-16 19:48:14 +05:30
b0d5067efb
Merge pull request #4 from ClinicalGraphics/fasthog
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I feel I have the easy job here!
2015-06-16 09:05:35 +01:00
03b7d638a7
Wrapped long lines according to pep8.
2015-06-16 09:57:49 +02:00
605eac2e8c
Renamed to use row/column naming convention.
2015-06-16 09:54:54 +02:00
78cf5a0f9a
Removed unused code.
2015-06-16 09:40:04 +02:00
8ab6e63e75
Removed unused import, applied pep8 formatting and corrected a method call
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that should have been refactored.
2015-06-16 09:36:02 +02:00
b4a3985c41
Merge pull request #1555 from sciunto/user_guide-joblib
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DOC: Add link joblib website in userguide
2015-06-15 21:04:00 -05:00
86624a2818
Merge pull request #1558 from blink1073/optimized-window
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ENH: Create an optimal_step parameter for view_as_windows
2015-06-15 20:50:36 -05:00
c37fc9ec20
Update _hog.py
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Made hog_histograms snake case
2015-06-15 22:51:30 +02:00
502377e9ce
Update _hoghistogram.pyx
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Made the function names PEP8 compatible and added another level of indentation.
I also tried renaming some things where I considered columns useful, but for example cells per row isn't entirely accurate. Any suggestions?
2015-06-15 22:49:20 +02:00
88e3ac45fc
Documentation correction.
2015-06-15 22:12:02 +02:00
Jonathan Helmus