a4e4e57ba5
Create new expected_warnings helper and some cleanup
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Add new helper function for expected warnings during test
Indentation cleanups and avoid skipping doctests if possible.
2014-12-23 16:50:18 -06:00
4680f30466
Add a test setup helper function
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Add a function to set up a skimage test
Switch to new test helper function
Import local packages that raise warnings in test setup function
More fixes to doctests
Fix regionprops doc test
Try and fix the test_rank failure.
Remove no longer needed RectangleSelector shim
Skip more doctests in _regionprops
Try importing another scipy subpackage
2014-12-23 16:49:20 -06:00
f72882fbd2
Import scipy before turning on warnings
2014-12-23 16:49:19 -06:00
0debedd82c
Handle more warnings and reset io plugins as needed
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Reset plugins prior to running collections test
Handle warnings in morphology pkg
Add __init__ for morpohology tests
Handle warnings for novice pkg
Handle warnings for restoration pkg
Handle warnings for segmentation pkg
Handle warnings for _shared pkg
Handle warnings for transform pkg
Handle warnings for util pkg
Handle warnings in viewer module
2014-12-23 16:48:16 -06:00
3a1079a180
Misc PEP8 fixes
2014-12-14 02:56:14 +01:00
78a7b7307a
Rename and deprecate filter module to prevent shadowing of built-in keyword
2014-11-10 12:53:50 +02:00
1b217f971e
replacing lena in examples and most tests
2014-11-07 16:01:23 +02:00
caaf75ebd1
Fix failing doctests
2014-07-19 19:16:46 -05:00
5677dafe41
Move away from random.random in favor of random.rand
2014-07-19 18:18:23 -05:00
7a074d5dd1
BUG: Fix slicing error revealed by numpy 1.9.0.
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Numpy 1.9.0 no longer allows oversize data to be assigned to a
boolean indexed 1-d array by discarding excess elements.
Closes #1050 .
2014-07-04 20:12:46 -06:00
6546b9dba4
Merge pull request #1007 from stefanv/label_refactor
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Move `morphology.label` to `measure.label` and prepare for 0-label transition
2014-05-25 21:56:42 -04:00
3fab7c0057
Remove incorrect np.round statement (directly cast m)
2014-05-08 18:54:52 -05:00
46829c6a33
Move implementation of label to measure submodule
2014-05-08 18:04:03 +02:00
26793068b1
Fix documentation, handle internal variable more efficiently.
2014-05-08 02:32:39 -05:00
069cba50ef
FIX: Address non-int DeprecationWarning from NumPy
2014-05-07 23:54:17 -05:00
4aa162fc78
FIX: Remove unnecessary .transpose introduced in PR #984
2014-05-07 22:10:27 -05:00
0d775c3aab
Remove check for non-numeric values in spacing.
2014-05-07 02:42:38 -05:00
0ac86b3e96
STY: More elegant and maintainable style per code review
2014-05-06 02:16:45 -05:00
88f08ebea2
TST: Add unit test for length-2 spacing with rank-2 input
2014-04-19 11:40:16 -05:00
7847287f46
FIX: Shortcut output or catch trivial cases in random_walker
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Also:
* New tests to cover these new checks
* Improvements to docstrings and user warnings
* Generalize handling of `sampling` in accordance with docstring
* Some extra whitespace to improve readability
2014-04-18 18:47:20 -05:00
7161175e43
DOC: Clarify UMFPACK warning; use if statements instead of assert
2014-04-18 16:52:19 -05:00
44f3e1b136
Remove deprecated skimage.segmentation.visualize_boundaries
2014-04-11 10:05:51 -04:00
18ce9d2b95
Remove depth from random_walker tests
2014-04-09 23:44:34 +10:00
264ca6ebd9
Remove deprecated depth parameter in random_walker
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This has been supplanted by the `spacing` parameter.
2014-04-09 23:41:37 +10:00
0af070b92f
Change default mode cascade in random_walker seg
2014-04-09 23:35:42 +10:00
dcd822bf48
Remove deprecated sigma default warning in SLIC
2014-04-09 17:57:06 +10:00
9510c03ce5
Remove deprecated ratio keyword in SLIC
2014-04-09 17:55:35 +10:00
2a930700d5
Fix ValueError: Buffer dtype mismatch, expected 'Py_ssize_t' but got 'long' on win-amd64
2014-03-10 20:51:43 -07:00
ee3ca829c6
Added a test for slic_zero and some other changes based on feedback from Github.
2014-01-26 18:01:59 +00:00
0c4adddf81
Some changes based on feedback from discussion on Github.
2014-01-22 19:25:18 +00:00
131dea07a0
Merged the separate loops for SLIC-zero and SLIC into one, and some minor improvements based on feedback on Github.
2014-01-21 20:08:07 +00:00
b4ac25200b
Bug fix: removed temporary debug code
2014-01-21 19:45:08 +00:00
0bd1d4490e
Added SLIC-zero to SLIC and changed SLIC implementation slightly
2014-01-21 19:45:08 +00:00
15c2989158
Added deprecation warning
2014-01-17 16:52:44 +01:00
f461d76004
Fixed minor documentation issues
2014-01-12 17:03:10 +00:00
4982b00f0c
Labels start at 0, for backward compatibility
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Code is PEP8 compliant
2013-12-24 18:45:55 +01:00
9178e77aef
Changed variable names for readbility, fixed PEP8 compliance
2013-12-24 13:25:48 +01:00
a50b05eeb8
Fixing some code, minor revision
2013-12-24 12:00:21 +01:00
08dc3a33d0
Changed coding style to be compliant with PEP8
2013-12-24 11:35:21 +01:00
53a4388e26
Changed tests to begin segment label at 1 instead of 0
2013-12-23 14:44:23 +01:00
e68ab76b24
Added max_size as a parameter
2013-12-23 01:17:51 +01:00
0d6540a82c
Changed SLIC superpixels so that connectivity is enforced optionally.
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A separate, private function is created that implements the postprocessing step
2013-12-23 00:49:06 +01:00
8db9096b20
Enforce SLIC superpixels connectivity
2013-12-20 09:18:14 +01:00
4033566ae6
Add test for invalid parameter combination
2013-11-22 12:22:10 +01:00
e74db662cb
Add test case for *_boundaries functions
2013-11-21 23:58:39 +01:00
b4c190e560
Explicitly set sigma value to 0 to avoid warning
2013-11-12 08:27:14 +01:00
7f27d5bffb
Fix label2rgb bug
2013-11-09 22:04:28 +01:00
615866ae16
Cast label_field to integer dtype for float intput
2013-11-09 21:56:18 +01:00
96f04ad530
slight performance improvement.
2013-10-20 15:15:55 -07:00
57e37352cb
FIX add missing min_size parameter, add regression test.
2013-10-20 15:15:36 -07:00
Steven Silvester