wip
Update tests
Docstring and TODO
Update docstring
Style fixes
Update equalize_adapthist to use new view_as_windows
Update equalize_adapthist to use new view_as_windows
Try rbase again
Update equalize_adapthist to use new view_as_windows
Fix relative imports
Style fixes
Add a deprecation warning and add to api_changes.txt
Update TODO and switch to 0.13 deprecation
Preserve the current API as much as possible and defer to 0.14
Move the new kwarg to the very end
Clarify deprecation warning
Update to use row/col in clahe
Update docstring
Use optimal_step to set up view_as_windows
Update equalize_adapthist to use new view_as_windows
Try rbase again
Update equalize_adapthist to use new view_as_windows
Fix relative imports
Style fixes
Add a deprecation warning and add to api_changes.txt
Update TODO and switch to 0.13 deprecation
Preserve the current API as much as possible and defer to 0.14
Move the new kwarg to the very end
Clarify deprecation warning
Update docstring
Docstring and TODO
Update docstring
Style fixes
Update equalize_adapthist to use new view_as_windows
Update equalize_adapthist to use new view_as_windows
Try rbase again
Update equalize_adapthist to use new view_as_windows
Fix relative imports
Style fixes
Add a deprecation warning and add to api_changes.txt
Update TODO and switch to 0.13 deprecation
Preserve the current API as much as possible and defer to 0.14
Move the new kwarg to the very end
Clarify deprecation warning
Update to use row/col in clahe
Update docstring
Use optimal_step to set up view_as_windows
Update equalize_adapthist to use new view_as_windows
Try rbase again
Update equalize_adapthist to use new view_as_windows
Fix relative imports
Style fixes
Add a deprecation warning and add to api_changes.txt
Update TODO and switch to 0.13 deprecation
Preserve the current API as much as possible and defer to 0.14
Style fixes
Update equalize_adapthist to use new view_as_windows
Update equalize_adapthist to use new view_as_windows
Try rbase again
Update equalize_adapthist to use new view_as_windows
Fix relative imports
Style fixes
Add a deprecation warning and add to api_changes.txt
Update TODO and switch to 0.13 deprecation
Preserve the current API as much as possible and defer to 0.14
Move the new kwarg to the very end
Clarify deprecation warning
Update to use row/col in clahe
Update docstring
Use optimal_step to set up view_as_windows
Update equalize_adapthist to use new view_as_windows
Try rbase again
Update equalize_adapthist to use new view_as_windows
Fix relative imports
Style fixes
Add a deprecation warning and add to api_changes.txt
Update equalize_adapthist to use new view_as_windows
Update equalize_adapthist to use new view_as_windows
Try rbase again
Update equalize_adapthist to use new view_as_windows
Fix relative imports
Style fixes
Add a deprecation warning and add to api_changes.txt
Update TODO and switch to 0.13 deprecation
Preserve the current API as much as possible and defer to 0.14
Move the new kwarg to the very end
Clarify deprecation warning
Update to use row/col in clahe
Update docstring
Use optimal_step to set up view_as_windows
Update equalize_adapthist to use new view_as_windows
Try rbase again
Update equalize_adapthist to use new view_as_windows
Fix relative imports
Style fixes
Update equalize_adapthist to use new view_as_windows
Try rbase again
Update equalize_adapthist to use new view_as_windows
Fix relative imports
Style fixes
Add a deprecation warning and add to api_changes.txt
Update TODO and switch to 0.13 deprecation
Preserve the current API as much as possible and defer to 0.14
Move the new kwarg to the very end
Clarify deprecation warning
Update to use row/col in clahe
Update docstring
Use optimal_step to set up view_as_windows
Update equalize_adapthist to use new view_as_windows
Try rbase again
Update equalize_adapthist to use new view_as_windows
Fix relative imports
# The first commit's message is:
Update equalize_adapthist to use new view_as_windows
Try rbase again
Update equalize_adapthist to use new view_as_windows
Fix relative imports
# This is the 2nd commit message:
Style fixes
# This is the 3rd commit message:
Add a deprecation warning and add to api_changes.txt
# This is the 4th commit message:
Update TODO and switch to 0.13 deprecation
# This is the 5th commit message:
Preserve the current API as much as possible and defer to 0.14
# This is the 6th commit message:
Move the new kwarg to the very end
# This is the 7th commit message:
Clarify deprecation warning
# This is the 8th commit message:
Update to use row/col in clahe
# This is the 9th commit message:
Update docstring
# This is the 10th commit message:
Use optimal_step to set up view_as_windows
Add a helper function to check for low contrast
Add a check for low contrast when using imsave
Use the low contrast helper in imshow and make sure warnings are always shown
Clean up parameter names and add doctests
Remove unnecessary warning context
Remove unnecessary warning context
Add dtype ranges for 64bit types
Update tests with new warnings
Fix doctest logic
Fix doctest logic
Add a low contrast test with multiple dtypes
Fix check for color images
Fix color check again
Add support for int32 types
Relax assertion for 32bit builds
Add a low contrast test with multiple dtypes
Add a low contrast test with multiple dtypes
Fix check for color images
Fix color check again
Add support for int32 types
Fix handling of multiple warnings
Update all test __init__ files
Update segmentation pkg
Update the color pkg
Update the exposure pkg
Update the filters pkg
Update the io pkg
Update the measure pkg
Update morphology package
Restructure test setup function
Add expected_warnings to __all__
Update restoration pkg.
Remove explicit filter check since it is done elsewhere
Fix the image test helpers
Update the transform pkg
Fix util pkg
Update viewer pkg
Add a function to set up a skimage test
Switch to new test helper function
Import local packages that raise warnings in test setup function
More fixes to doctests
Fix regionprops doc test
Try and fix the test_rank failure.
Remove no longer needed RectangleSelector shim
Skip more doctests in _regionprops
Try importing another scipy subpackage
# The first commit's message is:
Add a known_warning decorator and suppress warnings in color pkg
# This is the 2nd commit message:
Use the existing all_warnings context manager
# This is the 3rd commit message:
Raise warnings in data
# This is the 4th commit message:
Raise warnings in draw
# This is the 5th commit message:
Raise warnings in exposure
# This is the 6th commit message:
Suppress warnings in exposure tests
# This is the 7th commit message:
Add comments about warning suppressions
Remove print and fix comparision to None
Update test to make it clear there is a difference
Fix mask logic and `equalize_hist` in `__all__`.
Fix handling of mask and tweak mask test
Another run at travis
Update travis to avoid conflict
Update Travis build to use Anaconda
Travis updates and fixes
More travis fixes
Another travis attempt
Revert changes
Use PIL and Pillow
Refactor travis into 4 different builds
Fix activation error
Remove explicit mpl in build_versions.py
Make matplotlib an explicit requirement
Rearrange travis
Make pillow a hard requirement
Try again to make Pillow optional
Fix bash syntax error
Fix bash syntax error
Bump required cython version
More rearrangments
Remove mpl from build_versions, rearrange travis
Fix version check
Make matplotlib explicit again
Conda install into test env
Check for proper install
Allow tests to skip if networkx is not available
Allow tests to skip if networkx is not available
Try swapping pillow for matplotlib
Allow tests to pass when matplotlib is not present
Remove matplotlib from build_versions
Print PIL version
Get pillow from PIP
Allow tests to skip if matplotlib is not present.
Allow tests to skip if networkx is not present.
travis fix
Remove unused mpl import that caused test error
Use nose-cov and do not run doctests without optional libs
Bump required numpy version and fix nose calls
Make overlay test repeatable
bump numpy version again
Move low-end numpy to python 2.7
Play with minimum versions
Add version requirements and use functions
Add version requirements and use functions
Allow require to skip a test
More implementation of require decorator
Update require decorator and clean up tests
Only use requires decorator when needed
Fix python3 error in version_requirements
Fix build errors
Fix handling of require with tests
More fixes for require handler
Use latest miniconda
Fix more build errors
Fix another dict comprehension and travis file.
Fix missing imports
Fix dictionary again
Fix import warning
Fix last failing test on 2.6
Skip doc examples on python2.6
Do not run doctests on python2.6
Fix typo in travis.yml
Make numpy-1.6 compatibility changes
Use numpy-1.6 in travis python2.6
Add tests for version requirements
Fix line noise in PR
Add additional io plugins
Fix simpleitk test.
Fix python 3 error in freeimage_plugin.
Install imread in Travis.
Put matplotlib settings in XDG recommended directory
Fix formatting in travis yml
Fix formatting in travis yml
Make sure to close PIL file atexit
Fix name of apt package xcftools
Fix pil fp closing
Fix matplotlibrc creation
Only download SimpleITK on py2x, run coverage on py27
Fix travis yml syntax error
Run coveralls on py2.7
Install SimpleITK on py3.3 and run coverage on py3.3
Make simpleitk install quiet
Use standard nose and clean up incantation
Fix travis yml syntax error
Put in miniconda workout for libc error.
Fix imread plugin.
Fix travis syntax
Remove unused import
Remove miniconda libpng in favor of system png
Fix imread install and move libm removal to after optional pkg install.
Fix png header copy in travis yml
Another attempt to use png headers
Debug freeimage
Add jpeg library for freeimage and debug imread.
More debug for imread and freeimage
More freeimage and imread debugging
More debugging
Use correct paths for test env
Make sure imread is tied to libpng15
Add a TODO note for simpleitk test causing error.
Fix typo in yml
Cleanup and add more comments to travis yml
Update comment
Try and add 3.2 support.
Docstring formatting
Add more travis comments.
Try numpy 1.6 on python 2.7
Fix travis syntax error
Rename CONDA to ENV for clarity
Alias python on python 3.2
Use python 3.2 as the system python
Clean up libfreeimage install
Fix order on py3.2 pre_install
Move old numpy back to py26
Use the appropriate python calls.
Debug 3.2 build.
Update comment
Fix syntax error
Another fix for syntax error.
Install scipy after downloading import tools
More debugging for py32
Do not install conda on py3.2 (duh)
Fix typo in travis yml
Fix py32 qt install, separate pyfits and imread to find error
Fix syntax error and front-load option lib check for debug
pyfits is not supported in py3.2, try imread now
imread is also not supported on py3.2
install imread before pyfits to show relationship with libs
Make pip builds quiet
Minor formatting to retrigger build
Allow simpleitk to fail to download without breaking the build
Use travis_retry for SimpleITK
See what breaks when we keep libm in
Now remove libm again
This applies `adapt_rgb` to `equalize_adapthist` and removes the
special-casing of RGB images in that function. Note that tests of
`adapt_rgb` fail because some type conversion and intensity scaling
were added to pass tests for `equalize_adapthist`.
Steven Silvester