Commit Graph

4640 Commits

Author SHA1 Message Date
Gregory R. Lee a36ab880fc TST: add tests for coord_map function 2015-08-13 23:39:53 -04:00
Gregory R. Lee 7cfbd70204 BUG: fix bugs in coord_map for modes wrap and reflect 2015-08-13 23:39:53 -04:00
Josh Warner cbc851bba6 FIX/STY: Remove magic and enforce PEP8 in plugins. 2015-08-13 19:47:00 -05:00
Josh Warner (Mac) b35215ec6b TSTFIX: Missing assert statement and PEP8 2015-08-01 00:28:35 -05:00
Jonathan Helmus 70d1afe153 DOC: Simplified the message when a broken skimage build detected 2015-07-30 14:53:49 -05:00
Jonathan Helmus 00a841f1c2 MAINT: Refactored imports 2015-07-28 14:11:51 -05:00
Jonathan Helmus f10ae88139 MAINT: remove unchecked import from util.dtype 2015-07-28 14:06:03 -05:00
Jonathan Helmus d2519d610f ENH: Build check in skimage/__init__.py module 2015-07-28 14:00:32 -05:00
Jonathan Helmus 9727711405 Removed __check_build directory 2015-07-28 13:43:48 -05:00
Jonathan Helmus 93366d1b57 MAINT: Fixed __check_build setup.py file 2015-07-28 13:16:09 -05:00
Jonathan Helmus 64c4252eab BLD: __SKIMAGE_SETUP__ global variable for detecting build
The __SKIMAGE_SETUP__ global variable is set to True if skimage is being build
from the main setup.py file, False if not.  This behavior is modeled after a
similar setup in scikit-learn
2015-07-28 13:16:09 -05:00
michaelpacer edc16c6b75 Added build location checker, does not fully work yet. Complicated error. 2015-07-28 13:14:41 -05:00
Juan Nunez-Iglesias c2f8c4ab12 Merge pull request #1599 from blink1073/viridis
Add the viridis colormap and use it for non-standard images
2015-07-22 12:54:07 +10:00
Steven Silvester 5632c9c1a9 Only add colorbar if the cmap is not the default 2015-07-16 21:39:05 -05:00
Steven Silvester 9fb7676c92 Fix relative import 2015-07-16 21:28:37 -05:00
Steven Silvester eaaea690f2 Allow viridis to be used by name 2015-07-16 07:58:14 -05:00
Steven Silvester 3d963649fc Use a less-invasive approach 2015-07-16 07:56:14 -05:00
Steven Silvester 3d044af4da Be more explicit about configparser import 2015-07-15 21:22:41 -05:00
Josh Warner 24b3a81dd9 Merge pull request #1604 from blink1073/pil-close
FIX: Do not let PIL manage the file handle.
2015-07-14 21:47:32 -05:00
Steven Silvester 8122e26731 Add another file guard 2015-07-14 09:28:53 -05:00
Steven Silvester b75ee66a61 Clean up tests by using fresh figures 2015-07-14 07:47:59 -05:00
Steven Silvester a8580f76b3 Always create a colorbar and update tests 2015-07-14 07:47:59 -05:00
Steven Silvester 756b9289c9 Add the viridis colormap and make it the default 2015-07-14 07:47:59 -05:00
Steven Silvester 80fe225fc8 Fix failing test 2015-07-14 07:47:22 -05:00
Steven Silvester 085be65e83 Remove use of view_as_window and fix docstring 2015-07-14 07:47:22 -05:00
Steven Silvester 603844431a More variable renaming 2015-07-14 07:47:22 -05:00
Steven Silvester 323a2791bb Rename variable for clarity 2015-07-14 07:47:22 -05:00
Steven Silvester d755decf15 Remove debug print 2015-07-14 07:47:22 -05:00
Steven Silvester acc9a8a748 Use smarter indexing 2015-07-14 07:47:22 -05:00
Steven Silvester 1f56de9595 Remove min_overlap kwarg 2015-07-14 07:47:22 -05:00
Steven Silvester c948f9fe97 Fix view as windows test 2015-07-14 07:47:22 -05:00
Steven Silvester 3aafbb78dd Rename optimal_step and add comments 2015-07-14 07:47:22 -05:00
Steven Silvester 489ae2ec1a Fix rebase error 2015-07-14 07:47:22 -05:00
Steven Silvester 944e7204b7 wip
wip

Update tests

Docstring and TODO

Update docstring

Style fixes

Update equalize_adapthist to use new view_as_windows

Update equalize_adapthist to use new view_as_windows

Try rbase again

Update equalize_adapthist to use new view_as_windows

Fix relative imports

Style fixes

Add a deprecation warning and add to api_changes.txt

Update TODO and switch to 0.13 deprecation

Preserve the current API as much as possible and defer to 0.14

Move the new kwarg to the very end

Clarify deprecation warning

Update to use row/col in clahe

Update docstring

Use optimal_step to set up view_as_windows

Update equalize_adapthist to use new view_as_windows

Try rbase again

Update equalize_adapthist to use new view_as_windows

Fix relative imports

Style fixes

Add a deprecation warning and add to api_changes.txt

Update TODO and switch to 0.13 deprecation

Preserve the current API as much as possible and defer to 0.14

Move the new kwarg to the very end

Clarify deprecation warning

Update docstring
2015-07-14 07:47:22 -05:00
Steven Silvester 5ba3cad178 Update tests
Docstring and TODO

Update docstring

Style fixes

Update equalize_adapthist to use new view_as_windows

Update equalize_adapthist to use new view_as_windows

Try rbase again

Update equalize_adapthist to use new view_as_windows

Fix relative imports

Style fixes

Add a deprecation warning and add to api_changes.txt

Update TODO and switch to 0.13 deprecation

Preserve the current API as much as possible and defer to 0.14

Move the new kwarg to the very end

Clarify deprecation warning

Update to use row/col in clahe

Update docstring

Use optimal_step to set up view_as_windows

Update equalize_adapthist to use new view_as_windows

Try rbase again

Update equalize_adapthist to use new view_as_windows

Fix relative imports

Style fixes

Add a deprecation warning and add to api_changes.txt

Update TODO and switch to 0.13 deprecation

Preserve the current API as much as possible and defer to 0.14
2015-07-14 07:47:21 -05:00
Steven Silvester e42cb6fadf Update docstring
Style fixes

Update equalize_adapthist to use new view_as_windows

Update equalize_adapthist to use new view_as_windows

Try rbase again

Update equalize_adapthist to use new view_as_windows

Fix relative imports

Style fixes

Add a deprecation warning and add to api_changes.txt

Update TODO and switch to 0.13 deprecation

Preserve the current API as much as possible and defer to 0.14

Move the new kwarg to the very end

Clarify deprecation warning

Update to use row/col in clahe

Update docstring

Use optimal_step to set up view_as_windows

Update equalize_adapthist to use new view_as_windows

Try rbase again

Update equalize_adapthist to use new view_as_windows

Fix relative imports

Style fixes

Add a deprecation warning and add to api_changes.txt
2015-07-14 07:47:21 -05:00
Steven Silvester 6017e38e67 Style fixes
Update equalize_adapthist to use new view_as_windows

Update equalize_adapthist to use new view_as_windows

Try rbase again

Update equalize_adapthist to use new view_as_windows

Fix relative imports

Style fixes

Add a deprecation warning and add to api_changes.txt

Update TODO and switch to 0.13 deprecation

Preserve the current API as much as possible and defer to 0.14

Move the new kwarg to the very end

Clarify deprecation warning

Update to use row/col in clahe

Update docstring

Use optimal_step to set up view_as_windows

Update equalize_adapthist to use new view_as_windows

Try rbase again

Update equalize_adapthist to use new view_as_windows

Fix relative imports

Style fixes
2015-07-14 07:47:21 -05:00
Steven Silvester 998be36c2d Update equalize_adapthist to use new view_as_windows
Update equalize_adapthist to use new view_as_windows

Try rbase again

Update equalize_adapthist to use new view_as_windows

Fix relative imports

Style fixes

Add a deprecation warning and add to api_changes.txt

Update TODO and switch to 0.13 deprecation

Preserve the current API as much as possible and defer to 0.14

Move the new kwarg to the very end

Clarify deprecation warning

Update to use row/col in clahe

Update docstring

Use optimal_step to set up view_as_windows

Update equalize_adapthist to use new view_as_windows

Try rbase again

Update equalize_adapthist to use new view_as_windows

Fix relative imports
2015-07-14 07:47:21 -05:00
Steven Silvester 1b30c68d28 # This is a combination of 10 commits.
# The first commit's message is:
Update equalize_adapthist to use new view_as_windows

Try rbase again

Update equalize_adapthist to use new view_as_windows

Fix relative imports

# This is the 2nd commit message:

Style fixes

# This is the 3rd commit message:

Add a deprecation warning and add to api_changes.txt

# This is the 4th commit message:

Update TODO and switch to 0.13 deprecation

# This is the 5th commit message:

Preserve the current API as much as possible and defer to 0.14

# This is the 6th commit message:

Move the new kwarg to the very end

# This is the 7th commit message:

Clarify deprecation warning

# This is the 8th commit message:

Update to use row/col in clahe

# This is the 9th commit message:

Update docstring

# This is the 10th commit message:

Use optimal_step to set up view_as_windows
2015-07-14 07:47:21 -05:00
Steven Silvester f6653b781f Fix tifffile plugin import 2015-07-14 07:45:41 -05:00
Steven Silvester b67a4e3076 Move the tifffile wrapper to tiff plugin 2015-07-14 07:45:41 -05:00
Steven Silvester 182a6f6904 Fix handling of tiffile handles 2015-07-14 07:45:41 -05:00
Steven Silvester 6d7e0554a4 Use context manager for tif imread as well 2015-07-14 07:45:41 -05:00
Steven Silvester 66805cabdf Try fixing the remaining unclosed error 2015-07-14 07:45:41 -05:00
Steven Silvester 2fb59b9243 Fix variable name 2015-07-14 07:45:41 -05:00
Steven Silvester 1a27bea7da Allow pil imread to accept file-like objects again 2015-07-14 07:44:34 -05:00
Steven Silvester f1471dfd72 Remove offending line 2015-07-14 07:44:34 -05:00
Steven Silvester 7720527c95 Fix imsave test 2015-07-14 07:44:34 -05:00
Steven Silvester e1596aef1b Remove unclosed file guards 2015-07-14 07:44:34 -05:00
Steven Silvester 3272b85f86 Do not let PIL handle the file handle 2015-07-14 07:44:34 -05:00