d2bc02c10b
Credit myself for Marching Cubes
2013-09-02 20:23:00 -05:00
abc7a16a80
STYLE: Use np.array instead of np.r_ and import Poly3DCollection
2013-09-02 15:31:51 -05:00
1174d6fbc5
FIX: Errors in unit tests
2013-09-01 22:05:39 -05:00
cd306bad57
FIX: Add _marching_cubes_cy.pyx to bento.info
2013-09-01 21:53:01 -05:00
50d73fdd62
TEST: Add test suite for draw3d (ellipsoid/ellipsoid_stats)
2013-09-01 21:31:53 -05:00
c678fa55f4
DOC: Add concise marching cubes example to gallery using Matplotlib
2013-09-01 20:52:06 -05:00
14a0685838
MAINT: Refactor ellipsoid generator into skimage.draw
2013-09-01 20:51:20 -05:00
d0d9fee36e
DOC: Minor documentation formatting fixes in marching cubes
2013-09-01 20:49:58 -05:00
997339beae
FEAT: add tests for marching cubes and mesh surface area
2013-08-30 12:36:32 -05:00
b6f25906d6
DOCFIX: clarify docstrings and output vertex dimension ordering
2013-08-30 12:36:31 -05:00
19b8831a0d
FIX: incorrect name for unpack_unique_verts, revert axis ordering
2013-08-30 12:36:31 -05:00
fcd20e5660
FIX: use memoryviews, docfix, and change tri_list to face_list
2013-08-30 12:36:31 -05:00
164b416bd9
FIX: volume now directly cast, docfixes, C-contiguous ordering
2013-08-30 12:36:31 -05:00
f8cc4799da
FIX: dimension ordering now correct (x, y, z)
2013-08-30 12:36:31 -05:00
165de870d0
fix error in triangulation of case 120
2013-08-30 12:36:31 -05:00
296d102047
fix: symmetric ambiguous dual-plane cases require special treatment
2013-08-30 12:36:31 -05:00
44c04996c7
move unpack_unique_verts to Cython for speed
2013-08-30 12:36:31 -05:00
d2e51aa035
fix import error from _marching_cubes_cy
2013-08-30 12:36:31 -05:00
9a86aba226
rename files to conform with naming conventions
2013-08-30 12:36:31 -05:00
9779cd5e4a
fix: bug in second _append_tris call in case 125
2013-08-30 12:36:31 -05:00
5b990a0856
fix import of _marching_cubes
2013-08-30 12:36:31 -05:00
855031ad47
add _marching_cubes.pyx to list of Cython modules to build
2013-08-30 12:36:30 -05:00
84618af7c7
import marching_cubes and mesh_surface_area
2013-08-30 12:36:30 -05:00
5eba5a42a7
FEAT: Full 3d anisotropic implementation of marching cubes
...
Also includes surface area calculation algorithm from
generated mesh.
Convenient output to visualize with `mayavi.mlab`.
Efficient Cython implementation.
2013-08-30 12:34:55 -05:00
55e42309b8
Merge pull request #712 from emmanuelle/gaussian_filter
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Add a wrapper around `scipy.ndimage.gaussian_filter` with useful default behaviors.
2013-08-30 10:27:41 -07:00
9795d3fad4
Gaussian filter function: changed the default value of multichannel
...
Now we try to guess automatically whether the image is grayscale or RGB
2013-08-29 23:14:30 +02:00
b4242ca3fb
[BUG] iterable sigma and multichannel
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+ docstring improvement
2013-08-25 16:41:37 +02:00
15b4a4d979
DOC: corrected description of multichannel parameter
2013-08-25 15:04:22 +02:00
d4eba562b8
Merge pull request #711 from sciunto/minordoc
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DOC: Add titles to plots (watershed).
2013-08-25 05:59:44 -07:00
c68dab766e
DOC: add titles to plots
2013-08-25 14:52:30 +02:00
082586c10c
Added a wrapper around ndimage's Gaussian filter
...
This version of the Gaussian filter
* uses 'nearest' as the default boundary mode. This can be discussed,
but I had the impression that for images this is the most relevant
mode ('extending' boundaries)
* has a `multichannel` keyword, so that each color channel can be
filtered separately. For now no attempt is made at guessing whether
the image has color channels or not.
2013-08-25 14:50:55 +02:00
8757356a46
Merge pull request #638 from sciunto/contribute
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DOC: Activate travis for a fork.
2013-08-25 05:22:13 -07:00
1a4ea5c970
Merge pull request #710 from jni/pyamg-depends
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Add pyamg to the optional dependencies
2013-08-25 04:56:41 -07:00
4d80670925
Merge pull request #672 from jni/chull-fix
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Convex hull fix
2013-08-25 04:48:20 -07:00
13e83be692
Update PyAMG URL (no longer in Google Code)
2013-08-25 12:44:19 +02:00
bd2a61baf8
Add PyAMG to the optional dependencies list
2013-08-25 12:42:12 +02:00
944b45ad69
DOC: this step seems to be useless
2013-08-25 12:01:35 +02:00
072eb7640a
Add docstring note explaining coord use case
2013-08-25 11:06:31 +02:00
cb28bba6ee
Add note describing array copy if discontiguous
2013-08-25 11:04:50 +02:00
0c2f0dc532
Review the procedure
2013-08-25 10:34:25 +02:00
8d0f91724f
Merge pull request #702 from stefanv/remove_image_wrap
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Remove image wrapper.
2013-08-21 11:54:58 -07:00
7df2ef1e85
Add tests for image tags.
2013-08-21 17:50:21 +02:00
2b0f037422
Remove Image wrapper from io. Improve tags handling.
2013-08-21 17:46:38 +02:00
9a5a767ce8
Merge pull request #700 from stefanv/remove_logger
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Remove logger in favor of warnings.
2013-08-21 02:45:24 -07:00
4215ad11a1
Remove leftover debug statement.
2013-08-21 11:09:02 +02:00
4b39779382
Merge pull request #697 from ahojnnes/memoryviews
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Memoryview refactoring: Part 2.
2013-08-20 23:56:25 -07:00
05aeb7c7fe
Convert to int for Py_ssize_t
2013-08-21 07:48:39 +02:00
ca768b0b95
Remove unnecessary import of Warning.
2013-08-21 00:59:37 +02:00
d9836a6add
Remove logger in favor of warnings.
2013-08-21 00:10:33 +02:00
bbf7a56db2
Merge pull request #698 from mrterry/deltae_docs
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`deltaD` doc copy-editing.
2013-08-19 15:51:08 -07:00
Josh Warner (Mac)