d5b72f91ab
iradon: Do not suppress 0 frequency for filter=None.
2013-07-14 17:40:17 +02:00
4549204507
iradon: Clean up filter code.
2013-07-14 17:39:48 +02:00
60444ee4d3
Radon transform: PEP8 fixes.
2013-07-13 20:32:15 +02:00
462173a53a
Radon transform: Include boundary in reconstruction circle.
...
A test criterion needed to be relaxed slightly to have tests still
passing. This is ok, as the reconstruction circle is now larger, meaning
larger errors should be expected. Moreover, the test in question uses
random data, and changing the seed causes greater changes in accuracy
than the amount the test criterion was relaxed by.
2013-07-13 20:32:15 +02:00
288ee69483
radon: Correct docstring of order_angles_golden_ratio.
2013-07-13 20:32:15 +02:00
41c6f6d740
radon: Reduce duplication; simplifications.
2013-07-13 20:32:13 +02:00
47b6d0c5a6
Radon transform: Document rotation axis location.
2013-07-13 20:31:28 +02:00
2bfaafd9e2
Radon transform: Redefine projection center for sinograms.
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This definition is chosen because it is simple to express in the
documentation. No changes in accuracy are to be expected, but comparing
sinograms and reconstructions before and after this commit will give
different results in the cases where ``circle=False`` for ``radon`` or
``iradon``.
2013-07-13 19:31:43 +02:00
f11d5a1c8d
Merge pull request #652 from josteinbf/local-binary-pattern-example
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examples: Avoid python3-specific syntax.
2013-07-12 04:17:15 -07:00
09cfe0b929
examples: Avoid python3-specific syntax.
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from __future__ import ... is ineffective when the example script is
exec-ed by sphinx, resulting in a SyntaxError when running under
python2.
Fixes gh-649.
2013-07-12 12:52:26 +02:00
8927147e2c
Merge pull request #645 from josteinbf/iradon-sart-docstring
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iradon_sart: Format docs correctly.
2013-07-10 05:51:17 -07:00
a50892460c
Merge pull request #648 from stefanv/ransac_faulty_cast
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Fix casting in ransac example.
2013-07-10 04:33:23 -07:00
89c9b6161d
Fix casting in ransac example.
2013-07-10 12:45:22 +02:00
8c4b31e28c
Merge pull request #646 from ahojnnes/travis-bento
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Let travis-ci check bento.info.
2013-07-10 03:39:39 -07:00
4d307f5315
iradon_sart: Fix docstring typo.
2013-07-09 11:44:28 +02:00
1cc42bd943
iradon_sart: Reformat references.
2013-07-09 11:44:03 +02:00
0156593fb6
Let travis-ci check bento.info
2013-07-08 20:50:44 +02:00
dd9f6a16ab
Merge pull request #643 from stefanv/bento_fixes
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Fix Bento build.
2013-07-08 11:41:09 -07:00
5f62ad55a0
Merge pull request #614 from tonysyu/doc/local-binary-pattern
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Add explanation to LBP example.
2013-07-08 06:52:15 -07:00
18a06a0add
iradon_sart: Format docs correctly.
2013-07-08 14:50:06 +02:00
1b4cf9f76d
Fix Bento build.
2013-07-08 13:14:08 +02:00
47a0cd1a3f
Merge pull request #642 from sciunto/convex_hull_ex
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Doc: Convex hull example. Improvement.
2013-07-08 03:41:22 -07:00
acdfd8bc71
simplify modification image + comment
2013-07-07 12:21:34 +02:00
7048a9c995
add original picture
2013-07-07 12:05:30 +02:00
f3b1b39158
Merge pull request #635 from josteinbf/radon-cleanup
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Clean up radon and iradon to improve readability
2013-07-06 12:14:25 -07:00
bea50aa608
iradon: use util.pad for sinogram padding.
2013-07-06 20:55:54 +02:00
b3746b9090
iradon: Cleanup by locating related code in one place.
2013-07-06 20:55:54 +02:00
643a1bc1f5
iradon: Add test for cubic interpolation.
2013-07-06 20:55:53 +02:00
b90ba783ef
iradon: Only allow interpolation methods working well.
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Of the interpolation methods provided by scipy.interpolate.interp1d,
only cubic has been found to work well with the tests in skimage (other
methods are either identical to linear or nearest, or they produce bad
reconstructions).
2013-07-06 20:55:53 +02:00
2be327815e
radon: Use numpy.interp/scipy.interpolate.
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Scipy supports all interpolation kinds (nearest, linear) we need, while
numpy supports only linear interpolation. The numpy interpolation is
substantially faster, so this is used even though it complicates the
code slightly.
2013-07-06 20:55:53 +02:00
5955e4e612
iradon: Reduce code duplication.
2013-07-06 20:55:53 +02:00
ac460a9777
iradon: Use util.pad for array padding.
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This depends on util.pad accepting 0s in pad_width, which has a proposed
solution in gh-634.
2013-07-06 20:55:53 +02:00
237fb989b0
radon: Use util.pad for array padding.
2013-07-06 20:55:53 +02:00
6edd707a1b
Merge pull request #637 from sciunto/minorfix
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STYLE : PEP8 + import fix in hough_transform tests
2013-07-06 11:06:48 -07:00
15ed7bdf59
Merge pull request #584 from josteinbf/iradon-algebraic
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SART algorithm for tomography reconstruction
2013-07-06 10:24:24 -07:00
bf26ce7fae
Merge pull request #640 from sciunto/missingdoc
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DOCFIX: add docstrings to Cython grayscale dilate/erode & make them private funcs
2013-07-06 07:16:09 -07:00
cf3efba3c1
use previous import
2013-07-06 16:12:09 +02:00
de9d2662b1
MIN: fix pep8
2013-07-06 14:45:54 +02:00
f316abbfbe
DOC: add doctrings
2013-07-06 14:34:55 +02:00
e74b971335
erode & dilate -> private functions
2013-07-06 14:30:17 +02:00
2dfeab83df
PEP8 + import
2013-07-06 13:49:01 +02:00
516d6efa5d
Fix Python 3 incompatibility (also, some wording tweaks)
2013-07-06 00:55:51 -05:00
e5e0c73755
Merge pull request #634 from josteinbf/arraypad-zeros
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arraypad: allow padding with zero entries (i.e. no padding).
2013-07-05 07:33:10 -07:00
794a4d7dae
arraypad: allow padding with zero entries (i.e. no padding).
2013-07-05 14:29:09 +02:00
553767122b
Add SART to contributors.
2013-07-05 13:36:55 +02:00
3cdfeccc7a
iradon_sart: flip signs to reflect changes to radon.
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The changes to radon were introduced in gh-596.
2013-07-05 13:14:39 +02:00
af47941435
iradon_sart: fix comment spelling.
2013-07-05 13:14:39 +02:00
f2790d658c
iradon_sart: redefine projection center.
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This reflects the bugfixes related to issue gh-592 implemented in
gh-596.
2013-07-05 13:14:39 +02:00
06857d3b92
Radon tests: Check the correct error metric.
2013-07-05 13:14:39 +02:00
e2a0f7fff8
Radon example: Declare UTF-8 encoding.
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This is needed for non-ASCII characters in the references to papers
cited in the text.
2013-07-05 13:14:39 +02:00
Jostein Bø Fløystad