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Author SHA1 Message Date
Juan Nunez-Iglesias dc377970f5 Add functions to join and relabel segmentations 
The join of two segmentations is the segmentation in which two voxels
are in the same segment if and only if they are in the same segment in
both input segmentations.
 2012-11-28 12:22:14 +11:00
Stefan van der Walt a77923fe4c Merge pull request #373 from luispedro/imread_io_plugin 
ENH: Add imread io plugin.
 2012-11-24 11:07:52 -08:00
Luis Pedro Coelho 38f699471e TST Remove unneeded test 
Per stefanv's comment on github, this was testing functionality higher
up in skimage.io
 2012-11-24 19:04:55 +00:00
Luis Pedro Coelho 1f84c5e35f DOC Add myself to CONTRIBUTORS.txt 2012-11-24 19:04:43 +00:00
Luis Pedro Coelho 10ce9b89ab RFCT Use skimage.utils.convert for type conversion 2012-11-24 19:04:16 +00:00
Luis Pedro Coelho 6ebc43bad8 ENH Add imread io plugin 
This relies on imread (https://github.com/luispedro/imread) which
supports a few microscopy formats otherwise hard to read (LSM and
MetaMorph STK) as well as basic ones.
 2012-11-24 19:04:01 +00:00
Tony S Yu 13c61b9694 Merge pull request #361 from ahojnnes/hough-peaks 
Add hough transform peak detection
 2012-11-17 07:30:08 -08:00
Johannes Schönberger 2df0cdb443 Merge pull request #374 from tonysyu/add-rank-to-bentoinfo 
Add rank extensions to bento.info
 2012-11-15 00:42:53 -08:00
Tony S Yu d6a0b08859 ENH: Add filter.rank extensions to bento.info 2012-11-14 20:46:47 -05:00
Tony S Yu 2a8466a549 ENH: Compare full paths of cython extensions. 
If setup.py defined an extension in a subdirectory, the extension name in bento.info didn't match the one found in setup.py. Comparing the full extension path fixes the issue.
 2012-11-14 20:43:52 -05:00
Tony S Yu 22a73fc0cb BUG: Adapt to whitespace in text search 2012-11-14 20:08:16 -05:00
Johannes Schönberger 80a9a5aba5 Apply numpy reference style to rank filter descriptions 2012-11-14 08:33:27 +01:00
Johannes Schönberger 2403bee27c Merge pull request #348 from odebeir/rank_filters 
Rank filters
 2012-11-13 23:30:12 -08:00
Olivier Debeir 70f2b67ef7 fix: ref and test_otsu doc 2012-11-14 08:00:59 +01:00
Olivier Debeir 698d6ae13f fix:< Py_ssize_t > 0 and & pop 2012-11-13 17:07:21 +01:00
Olivier Debeir 411d4686d5 fix:wrap lines in tests 2012-11-13 17:02:08 +01:00
Olivier Debeir f133158792 autopep8 for plot_* and rank sources 2012-11-13 09:37:58 +01:00
Olivier Debeir 114f3a84f3 Merge pull request #2 from ahojnnes/rank-filters 2012-11-12 22:25:27 -08:00
Johannes Schönberger af55d712ee PEP8 fixes for long rank filter example 2012-11-12 20:10:56 +01:00
Johannes Schönberger 4a0b22aff5 Use common spelling for greylevel 2012-11-12 20:07:02 +01:00
Johannes Schönberger d0d5df0d68 Improve description of long rank filter example 2012-11-12 20:04:42 +01:00
Johannes Schönberger eaf48a71e9 Use numpy reference style 2012-11-12 19:31:06 +01:00
Johannes Schönberger a376a07c3b PEP8 fixes in doc string examples 2012-11-12 19:29:00 +01:00
Johannes Schönberger fce2ae3f5f Fix spelling of X-bit 2012-11-12 19:25:46 +01:00
Johannes Schönberger f724b97f90 Fix typos and spelling of readme 2012-11-12 19:24:02 +01:00
Olivier Debeir 542ec6fdc5 fix: local otsu doc 2012-11-12 14:57:08 +01:00
Olivier Debeir da391089cb add: local Otsu synthetic example 2012-11-12 14:48:38 +01:00
Olivier Debeir db2e066f4c add: test otsu 2012-11-12 14:40:49 +01:00
Olivier Debeir add437a9f2 add: test entropy 8- & 16-bit 2012-11-12 10:39:12 +01:00
Olivier Debeir c9f1b67c7b fix: check pop==0 for some kernels 2012-11-12 10:05:52 +01:00
Olivier Debeir fd82ac9959 add new tests 2012-11-12 09:54:10 +01:00
Olivier Debeir a09ec78977 remove local demo from git 2012-11-12 09:34:33 +01:00
Olivier Debeir 47b0a72b32 fix: plt.show() removed in doc 2012-11-12 09:02:40 +01:00
odebeir 08b748c379 local Otsu returns now the threshold values 2012-11-11 14:39:09 +01:00
Olivier Debeir c3fc8c636b Merge pull request #1 from ahojnnes/rank-filters 
Rank filters
 2012-11-10 08:50:32 -08:00
Johannes Schönberger 8fea5d15d1 Change data type of pop variable to float 2012-11-10 13:49:52 +01:00
Johannes Schönberger f5ad204aca Use single file for test cases and rename file 2012-11-10 11:23:43 +01:00
Johannes Schönberger c9f95db67f Fix, improve and extend test cases 2012-11-10 11:21:55 +01:00
Johannes Schönberger 8c55640d60 Do not ignore exceptions in core functions 2012-11-10 11:20:56 +01:00
Johannes Schönberger c00fedde6c Fix, improve and extend histogram test cases 2012-11-10 09:43:15 +01:00
Johannes Schönberger 7ea3a754e0 Remove duplicate contiguous conversion 2012-11-10 08:59:48 +01:00
Johannes Schönberger 2bb139fb03 Wrap lines 2012-11-10 08:39:27 +01:00
Johannes Schönberger 804b426787 Clean Readme 2012-11-10 08:35:23 +01:00
Johannes Schönberger 045eb88e9f Change type of pop variable from float to Py_ssize_t 2012-11-10 08:31:20 +01:00
Johannes Schönberger 28e7b19c93 Improve code layout of kernel functions 2012-11-10 08:24:44 +01:00
Johannes Schönberger 4a14a217b9 Improve overall code style 2012-11-09 19:39:30 +01:00
Johannes Schönberger 0737cc4220 Merge branch 'rank_filters' of https://github.com/odebeir/scikits-image into rank-filters 2012-11-09 17:37:53 +01:00
Johannes Schönberger 6df06b46dd Fix threshold default value description 2012-11-08 17:14:30 +01:00
Olivier Debeir 44ada6cb70 add local Otsu threshold 2012-11-08 17:10:00 +01:00
Johannes Schönberger 692cfe7e8f Use center of mass for peaks with equal accumulator values 2012-11-08 16:56:24 +01:00