ea1566fffb
Fix image dimension sanitizing at function start
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`np.atleast_3d` will add a singleton dimension at the end of an array
if needed. This is not the correct thing to do if `multichannel=False`
based on the subsequent lines. If the input image was 2D with shape
`(40, 50)` and `multichannel=False`, then `np.atleast_3d` gives it
shape `(40, 50, 1)`, and then, because `multichannel=False`, the rest
of the code gives it shape `(40, 50, 1, 1)`. This results in the final
returned array having shape `(40, 50, 1)` instead of the desired
`(40, 50)`.
This commit fixes that and updates the test to detect this failure.
2013-09-16 16:02:24 +10:00
05aaeef5ac
Change default value of sigma
2013-09-14 10:08:07 +02:00
22ca0ae457
Fix indentation
2013-09-03 20:31:24 +02:00
8137c41e22
Add optional description to parameters
2013-09-03 10:48:53 +02:00
770e28d2bb
Rename clusters to segments
2013-09-03 10:47:49 +02:00
d9e64b43e6
Make image C-contiguous
2013-09-03 08:40:18 +02:00
80ed875147
Add missing rgb2lab import
2013-09-01 17:12:10 +02:00
a6d1b10e25
Use absolute imports
2013-09-01 16:53:05 +02:00
eeddd9e35f
Revert multichannel magic and improve parameter docs
2013-09-01 16:46:01 +02:00
e5eea8e135
Improve documentation of sigma
2013-09-01 16:46:01 +02:00
f5cfbcfe97
Reorder variable declarations
2013-09-01 16:46:01 +02:00
bd388383a0
Fix bug in window extent determination
2013-09-01 16:46:01 +02:00
bc7efb01e4
Fix dtype bug
2013-09-01 16:46:01 +02:00
84579a6c2c
Remove legacy comment
2013-09-01 16:46:01 +02:00
471b293a9e
Remove unnecessary parameters and update doc string
2013-09-01 16:46:00 +02:00
6b5556b279
Reduce memory footprint
2013-09-01 16:46:00 +02:00
fd729a4e30
Improve SLIC
2013-09-01 16:46:00 +02:00
a401cb8d9d
Merge pull request #721 from ahojnnes/travis
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Remove unnecessary mirror option.
2013-09-01 07:45:05 -07:00
74b932e1be
Remove unnecessary mirror option
2013-09-01 16:03:14 +02:00
586a7c9087
Merge pull request #720 from michaelaye/patch-1
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removing some unused selem declarations
2013-08-31 23:31:45 -07:00
1bcc2b418a
removing some unused selem declarations
2013-08-31 22:48:49 -07:00
55e42309b8
Merge pull request #712 from emmanuelle/gaussian_filter
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Add a wrapper around `scipy.ndimage.gaussian_filter` with useful default behaviors.
2013-08-30 10:27:41 -07:00
9795d3fad4
Gaussian filter function: changed the default value of multichannel
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Now we try to guess automatically whether the image is grayscale or RGB
2013-08-29 23:14:30 +02:00
b4242ca3fb
[BUG] iterable sigma and multichannel
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+ docstring improvement
2013-08-25 16:41:37 +02:00
15b4a4d979
DOC: corrected description of multichannel parameter
2013-08-25 15:04:22 +02:00
d4eba562b8
Merge pull request #711 from sciunto/minordoc
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DOC: Add titles to plots (watershed).
2013-08-25 05:59:44 -07:00
c68dab766e
DOC: add titles to plots
2013-08-25 14:52:30 +02:00
082586c10c
Added a wrapper around ndimage's Gaussian filter
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This version of the Gaussian filter
* uses 'nearest' as the default boundary mode. This can be discussed,
but I had the impression that for images this is the most relevant
mode ('extending' boundaries)
* has a `multichannel` keyword, so that each color channel can be
filtered separately. For now no attempt is made at guessing whether
the image has color channels or not.
2013-08-25 14:50:55 +02:00
8757356a46
Merge pull request #638 from sciunto/contribute
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DOC: Activate travis for a fork.
2013-08-25 05:22:13 -07:00
1a4ea5c970
Merge pull request #710 from jni/pyamg-depends
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Add pyamg to the optional dependencies
2013-08-25 04:56:41 -07:00
4d80670925
Merge pull request #672 from jni/chull-fix
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Convex hull fix
2013-08-25 04:48:20 -07:00
13e83be692
Update PyAMG URL (no longer in Google Code)
2013-08-25 12:44:19 +02:00
bd2a61baf8
Add PyAMG to the optional dependencies list
2013-08-25 12:42:12 +02:00
944b45ad69
DOC: this step seems to be useless
2013-08-25 12:01:35 +02:00
072eb7640a
Add docstring note explaining coord use case
2013-08-25 11:06:31 +02:00
cb28bba6ee
Add note describing array copy if discontiguous
2013-08-25 11:04:50 +02:00
0c2f0dc532
Review the procedure
2013-08-25 10:34:25 +02:00
8d0f91724f
Merge pull request #702 from stefanv/remove_image_wrap
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Remove image wrapper.
2013-08-21 11:54:58 -07:00
7df2ef1e85
Add tests for image tags.
2013-08-21 17:50:21 +02:00
2b0f037422
Remove Image wrapper from io. Improve tags handling.
2013-08-21 17:46:38 +02:00
9a5a767ce8
Merge pull request #700 from stefanv/remove_logger
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Remove logger in favor of warnings.
2013-08-21 02:45:24 -07:00
4215ad11a1
Remove leftover debug statement.
2013-08-21 11:09:02 +02:00
4b39779382
Merge pull request #697 from ahojnnes/memoryviews
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Memoryview refactoring: Part 2.
2013-08-20 23:56:25 -07:00
05aeb7c7fe
Convert to int for Py_ssize_t
2013-08-21 07:48:39 +02:00
ca768b0b95
Remove unnecessary import of Warning.
2013-08-21 00:59:37 +02:00
d9836a6add
Remove logger in favor of warnings.
2013-08-21 00:10:33 +02:00
bbf7a56db2
Merge pull request #698 from mrterry/deltae_docs
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`deltaD` doc copy-editing.
2013-08-19 15:51:08 -07:00
7e7fb2fc85
comma usage
2013-08-19 11:26:07 -07:00
600305eb85
doc quickfix
2013-08-19 11:04:29 -07:00
5f82c206b4
Fix bugs in usage of typed memoryviews
2013-08-19 19:31:40 +02:00
Juan Nunez-Iglesias