Actually use Lindsey's changes... :)

This commit is contained in:
Rowan Cockett
2015-11-15 17:59:05 -08:00
parent 4ac85e81d6
commit 2c00459846
+192 -156
View File
@@ -203,7 +203,9 @@ class TreeMesh(BaseMesh, InnerProducts):
'_gridCC', '_gridN', '_gridFx', '_gridFy', '_gridFz', '_gridEx', '_gridEy', '_gridEz',
'_area', '_edge', '_vol',
'_faceDiv', '_edgeCurl', '_nodalGrad',
'_aveF2CC', '_aveF2CCV', '_aveE2CC', '_aveE2CCV','_aveN2CC'
'_aveFx2CC', '_aveFy2CC', '_aveFz2CC', '_aveF2CC', '_aveF2CCV',
'_aveEx2CC', '_aveEy2CC', '_aveEz2CC', '_aveE2CC', '_aveE2CCV',
'_aveN2CC',
]
for p in deleteThese:
if hasattr(self, p): delattr(self, p)
@@ -1407,207 +1409,241 @@ class TreeMesh(BaseMesh, InnerProducts):
# return self._nodalGrad
@property
def aveE2CC(self):
"Construct the averaging operator on cell edges to cell centers."
if getattr(self, '_aveE2CC', None) is None:
# TODO: preallocate
def aveEx2CC(self):
if getattr(self, '_aveEx2CC', None) is None:
I, J, V = [], [], []
if self.dim == 2:
raise NotImplementedError('aveE2CC not implemented yet')
# PM = [1./(2.*self.dim)]*self.dim # plus / plus
# offset = [0]*2 + [self.ntEx]*2
# for ii, ind in enumerate(self._sortedCells):
# p = self._pointer(ind)
# w = self._levelWidth(p[-1])
# edges = [
# self._ex2i[self._index([ p[0] , p[1] , p[2] , p[3]])],
# self._ex2i[self._index([ p[0] , p[1] + w, p[2] , p[3]])],
# self._ex2i[self._index([ p[0] , p[1] , p[2] + w, p[3]])],
# self._ex2i[self._index([ p[0] , p[1] + w, p[2] + w, p[3]])],
# self._ey2i[self._index([ p[0] , p[1] , p[2] , p[3]])],
# self._ey2i[self._index([ p[0] + w, p[1] , p[2] , p[3]])],
# self._ey2i[self._index([ p[0] , p[1] , p[2] + w, p[3]])],
# self._ey2i[self._index([ p[0] + w, p[1] , p[2] + w, p[3]])],
# self._ez2i[self._index([ p[0] , p[1] , p[2] , p[3]])],
# self._ez2i[self._index([ p[0] + w, p[1] , p[2] , p[3]])],
# self._ez2i[self._index([ p[0] , p[1] + w, p[2] , p[3]])],
# self._ez2i[self._index([ p[0] + w, p[1] + w, p[2] , p[3]])]
# ]
# for off, pm, edge in zip(offset,PM,edges):
# I += [ii]
# J += [edge + off]
# V += [pm]
raise Exception('aveEx2CC not implemented in 2D')
if self.dim == 3:
PM = [1./(4.*self.dim)]*4*self.dim # plus / plus
offset = [0]*4 + [self.ntEx]*4 + [self.ntEx+self.ntEy]*4
PM = [1./4.]*4
for ii, ind in enumerate(self._sortedCells):
p = self._pointer(ind)
w = self._levelWidth(p[-1])
edges = [
edgesx = [
self._ex2i[self._index([ p[0] , p[1] , p[2] , p[3]])],
self._ex2i[self._index([ p[0] , p[1] + w, p[2] , p[3]])],
self._ex2i[self._index([ p[0] , p[1] , p[2] + w, p[3]])],
self._ex2i[self._index([ p[0] , p[1] + w, p[2] + w, p[3]])],
]
for pm, edge in zip(PM,edgesx):
I += [ii]
J += [edge]
V += [pm]
Av = sp.csr_matrix((V,(I,J)), shape=(self.nC, self.ntEx))
Re = self._deflationMatrix('Ex',asOnes=False,withHanging=True)
self._aveEx2CC = Av*Re
return self._aveEx2CC
@property
def aveEy2CC(self):
"Construct the averaging operator on cell edges to cell centers."
if getattr(self, '_aveEy2CC', None) is None:
I, J, V = [], [], []
if self.dim == 2:
raise NotImplementedError('aveEy2CC not implemented in 2D')
if self.dim == 3:
PM = [1./4.]*4 # plus / plus
for ii, ind in enumerate(self._sortedCells):
p = self._pointer(ind)
w = self._levelWidth(p[-1])
edgesy = [
self._ey2i[self._index([ p[0] , p[1] , p[2] , p[3]])],
self._ey2i[self._index([ p[0] + w, p[1] , p[2] , p[3]])],
self._ey2i[self._index([ p[0] , p[1] , p[2] + w, p[3]])],
self._ey2i[self._index([ p[0] + w, p[1] , p[2] + w, p[3]])],
]
for pm, edge in zip(PM,edgesy):
I += [ii]
J += [edge]
V += [pm]
Av = sp.csr_matrix((V,(I,J)), shape=(self.nC, self.ntEy))
Re = self._deflationMatrix('Ey',asOnes=False,withHanging=True)
self._aveEy2CC = Av*Re
return self._aveEy2CC
@property
def aveEz2CC(self):
"Construct the averaging operator on cell edges to cell centers."
# raise Exception('Not yet implemented!')
if getattr(self, '_aveEz2CC', None) is None:
I, J, V = [], [], []
if self.dim == 2:
raise Exception('There are no z edges in 2D')
if self.dim == 3:
PM = [1./4.]*4 # plus / plus
for ii, ind in enumerate(self._sortedCells):
p = self._pointer(ind)
w = self._levelWidth(p[-1])
edgesz = [
self._ez2i[self._index([ p[0] , p[1] , p[2] , p[3]])],
self._ez2i[self._index([ p[0] + w, p[1] , p[2] , p[3]])],
self._ez2i[self._index([ p[0] , p[1] + w, p[2] , p[3]])],
self._ez2i[self._index([ p[0] + w, p[1] + w, p[2] , p[3]])]
self._ez2i[self._index([ p[0] + w, p[1] + w, p[2] , p[3]])],
]
for off, pm, edge in zip(offset,PM,edges):
for pm, edge in zip(PM,edgesz):
I += [ii]
J += [edge + off]
J += [edge]
V += [pm]
Av = sp.csr_matrix((V,(I,J)), shape=(self.nC, self.ntE))
Re = self._deflationMatrix('E',asOnes=False,withHanging=True)
Av = sp.csr_matrix((V,(I,J)), shape=(self.nC, self.ntEz))
Re = self._deflationMatrix('Ez',asOnes=False,withHanging=True)
self._aveE2CC = Av*Re
self._aveEz2CC = Av*Re
return self._aveEz2CC
@property
def aveE2CC(self):
"Construct the averaging operator on cell edges to cell centers."
if getattr(self, '_aveE2CC', None) is None:
if self.dim == 2:
raise Exception('aveE2CC not implemented in 2D')
elif self.dim == 3:
self._aveE2CC = 1./self.dim*sp.hstack([self.aveEx2CC, self.aveEy2CC, self.aveEz2CC])
return self._aveE2CC
@property
def aveE2CCV(self):
"Construct the averaging operator on cell edges to cell centers."
raise Exception('Not yet implemented!')
# raise Exception('Not yet implemented!')
if getattr(self, '_aveE2CCV', None) is None:
if self.dim == 2:
raise Exception('aveE2CC not implemented in 2D')
elif self.dim == 3:
self._aveE2CCV = sp.block_diag([self.aveEx2CC, self.aveEy2CC, self.aveEz2CC])
return self._aveE2CCV
@property
def aveFx2CC(self):
if getattr(self, '_aveFx2CC', None) is None:
I, J, V = [], [], []
PM = [1./2.]*self.dim # 0.5, 0.5
for ii, ind in enumerate(self._sortedCells):
p = self._pointer(ind)
w = self._levelWidth(p[-1])
if self.dim == 2:
facesx = [
self._fx2i[self._index([ p[0] , p[1] , p[2]])],
self._fx2i[self._index([ p[0] + w, p[1] , p[2]])],
]
elif self.dim == 3:
facesx = [
self._fx2i[self._index([ p[0] , p[1] , p[2] , p[3]])],
self._fx2i[self._index([ p[0] + w, p[1] , p[2] , p[3]])],
]
for pm, face in zip(PM,facesx):
I += [ii]
J += [face]
V += [pm]
Av = sp.csr_matrix((V,(I,J)), shape=(self.nC, self.ntFx))
Rf = self._deflationMatrix('Fx',asOnes=True,withHanging=True)
self._aveFx2CC = Av*Rf
return self._aveFx2CC
@property
def aveFy2CC(self):
if getattr(self, '_aveFy2CC', None) is None:
I, J, V = [], [], []
PM = [1./2.]*2 # 0.5, 0.5
for ii, ind in enumerate(self._sortedCells):
p = self._pointer(ind)
w = self._levelWidth(p[-1])
if self.dim == 2:
facesy = [
self._fy2i[self._index([ p[0] , p[1] , p[2]])],
self._fy2i[self._index([ p[0] , p[1] + w, p[2]])],
]
elif self.dim == 3:
facesy = [
self._fy2i[self._index([ p[0] , p[1] , p[2] , p[3]])],
self._fy2i[self._index([ p[0] , p[1] + w, p[2] , p[3]])],
]
for pm, face in zip(PM,facesy):
I += [ii]
J += [face]
V += [pm]
Av = sp.csr_matrix((V,(I,J)), shape=(self.nC, self.ntFy))
Rf = self._deflationMatrix('Fy',asOnes=True,withHanging=True)
self._aveFy2CC = Av*Rf
return self._aveFy2CC
@property
def aveFz2CC(self):
if getattr(self, '_aveFz2CC', None) is None:
I, J, V = [], [], []
PM = [1./2.]*2 # 0.5, 0.5
for ii, ind in enumerate(self._sortedCells):
p = self._pointer(ind)
w = self._levelWidth(p[-1])
if self.dim == 2:
raise Exception('There are no z-faces in 2D')
elif self.dim == 3:
facesz = [
self._fz2i[self._index([ p[0] , p[1] , p[2] , p[3]])],
self._fz2i[self._index([ p[0] , p[1] , p[2] + w, p[3]])],
]
for pm, face in zip(PM,facesz):
I += [ii]
J += [face]
V += [pm]
Av = sp.csr_matrix((V,(I,J)), shape=(self.nC, self.ntFz))
Rf = self._deflationMatrix('Fz',asOnes=True,withHanging=True)
self._aveFz2CC = Av*Rf
return self._aveFz2CC
@property
def aveF2CC(self):
"Construct the averaging operator on cell faces to cell centers."
if getattr(self, '_aveF2CC', None) is None:
# TODO: Preallocate!
I, J, V = [], [], []
PM = [1./(2.*self.dim)]*2*self.dim # plus / plus
# TODO total number of faces?
offset = [0]*2 + [self.ntFx]*2 + [self.ntFx+self.ntFy]*2
for ii, ind in enumerate(self._sortedCells):
p = self._pointer(ind)
w = self._levelWidth(p[-1])
if self.dim == 2:
faces = [
self._fx2i[self._index([ p[0] , p[1] , p[2]])],
self._fx2i[self._index([ p[0] + w, p[1] , p[2]])],
self._fy2i[self._index([ p[0] , p[1] , p[2]])],
self._fy2i[self._index([ p[0] , p[1] + w, p[2]])]
]
elif self.dim == 3:
faces = [
self._fx2i[self._index([ p[0] , p[1] , p[2] , p[3]])],
self._fx2i[self._index([ p[0] + w, p[1] , p[2] , p[3]])],
self._fy2i[self._index([ p[0] , p[1] , p[2] , p[3]])],
self._fy2i[self._index([ p[0] , p[1] + w, p[2] , p[3]])],
self._fz2i[self._index([ p[0] , p[1] , p[2] , p[3]])],
self._fz2i[self._index([ p[0] , p[1] , p[2] + w, p[3]])]
]
for off, pm, face in zip(offset,PM,faces):
I += [ii]
J += [face + off]
V += [pm]
Av = sp.csr_matrix((V,(I,J)), shape=(self.nC, self.ntF))
Rf = self._deflationMatrix('F',asOnes=True,withHanging=True)
self._aveF2CC = Av*Rf
if self.dim == 2:
self._aveF2CC = 1./self.dim*sp.hstack([self.aveFx2CC, self.aveFy2CC])
elif self.dim == 3:
self._aveF2CC = 1./self.dim*sp.hstack([self.aveFx2CC, self.aveFy2CC, self.aveFz2CC])
return self._aveF2CC
@property
def aveF2CCV(self):
"Construct the averaging operator on cell faces to cell centers."
if getattr(self, '_aveF2CCV', None) is None:
# TODO: Preallocate!
I, J, V = [], [], []
PM = [1./2.]*2 # 0.5, 0.5
offsetx = [0]*2
offsety = [self.ntFx]*2
if self.dim == 2:
for ii, ind in enumerate(self._sortedCells):
p = self._pointer(ind)
w = self._levelWidth(p[-1])
facesx = [
self._fx2i[self._index([ p[0] , p[1] , p[2]])],
self._fx2i[self._index([ p[0] + w, p[1] , p[2]])],
]
facesy = [
self._fy2i[self._index([ p[0] , p[1] , p[2]])],
self._fy2i[self._index([ p[0] , p[1] + w, p[2]])],
]
for off, pm, face in zip(offsetx,PM,facesx):
I += [ii]
J += [face + off]
V += [pm]
for off, pm, face in zip(offsety,PM,facesy):
I += [ii + self.nC]
J += [face + off]
V += [pm]
if self.dim == 3:
offsetz = [self.ntFx + self.ntFy]*2
for ii, ind in enumerate(self._sortedCells):
p = self._pointer(ind)
w = self._levelWidth(p[-1])
facesx = [
self._fx2i[self._index([ p[0] , p[1] , p[2] , p[3]])],
self._fx2i[self._index([ p[0] + w, p[1] , p[2] , p[3]])],
]
facesy = [
self._fy2i[self._index([ p[0] , p[1] , p[2] , p[3]])],
self._fy2i[self._index([ p[0] , p[1] + w, p[2] , p[3]])],
]
facesz = [
self._fz2i[self._index([ p[0] , p[1] , p[2] , p[3]])],
self._fz2i[self._index([ p[0] , p[1] , p[2] + w, p[3]])]
]
for off, pm, face in zip(offsetx,PM,facesx):
I += [ii]
J += [face + off]
V += [pm]
for off, pm, face in zip(offsety,PM,facesy):
I += [ii + self.nC]
J += [face + off]
V += [pm]
for off, pm, face in zip(offsetz,PM,facesz):
I += [ii + self.nC*2]
J += [face + off]
V += [pm]
Av = sp.csr_matrix((V,(I,J)), shape=(self.nC*self.dim, self.ntF))
Rf = self._deflationMatrix('F',asOnes=True,withHanging=True)
self._aveF2CCV = Av*Rf
self._aveF2CCV = sp.block_diag([self.aveFx2CC, self.aveFy2CC])
elif self.dim == 3:
self._aveF2CCV = sp.block_diag([self.aveFx2CC, self.aveFy2CC, self.aveFz2CC])
return self._aveF2CCV