Merge branch 'master' of https://github.com/simpeg/simpeg into dcip/dev

This commit is contained in:
seogi_macbook
2016-04-05 21:49:38 -07:00
20 changed files with 1606 additions and 698 deletions
+1 -1
View File
@@ -1,4 +1,4 @@
[bumpversion]
current_version = 0.1.9
current_version = 0.1.10
files = setup.py SimPEG/__init__.py docs/conf.py
+48 -64
View File
@@ -54,8 +54,7 @@ class BaseFDEMProblem(BaseEMProblem):
Ainv = self.Solver(A, **self.solverOpts)
sol = Ainv * rhs
Srcs = self.survey.getSrcByFreq(freq)
ftype = self._fieldType + 'Solution'
F[Srcs, ftype] = sol
F[Srcs, self._solutionType] = sol
Ainv.clean()
return F
@@ -78,30 +77,19 @@ class BaseFDEMProblem(BaseEMProblem):
Jv = self.dataPair(self.survey)
for freq in self.survey.freqs:
A = self.getA(freq) #
A = self.getA(freq)
Ainv = self.Solver(A, **self.solverOpts)
for src in self.survey.getSrcByFreq(freq):
ftype = self._fieldType + 'Solution'
u_src = u[src, ftype]
dA_dm = self.getADeriv_m(freq, u_src, v)
dRHS_dm = self.getRHSDeriv_m(freq, src, v)
du_dm = Ainv * ( - dA_dm + dRHS_dm )
u_src = u[src, self._solutionType]
dA_dm_v = self.getADeriv(freq, u_src, v)
dRHS_dm_v = self.getRHSDeriv(freq, src, v)
du_dm_v = Ainv * ( - dA_dm_v + dRHS_dm_v )
for rx in src.rxList:
df_duFun = getattr(u, '_%sDeriv_u'%rx.projField, None)
df_dudu_dm = df_duFun(src, du_dm, adjoint=False)
df_dmFun = getattr(u, '_%sDeriv_m'%rx.projField, None)
df_dm = df_dmFun(src, v, adjoint=False)
Df_Dm = np.array(df_dudu_dm + df_dm,dtype=complex)
P = lambda v: rx.evalDeriv(src, self.mesh, u, v) # wrt u, also have wrt m
Jv[src, rx] = P(Df_Dm)
df_dmFun = getattr(u, '_%sDeriv'%rx.projField, None)
df_dm_v = df_dmFun(src, du_dm_v, v, adjoint=False)
Jv[src, rx] = rx.evalDeriv(src, self.mesh, u, df_dm_v)
Ainv.clean()
return Utils.mkvc(Jv)
@@ -132,32 +120,28 @@ class BaseFDEMProblem(BaseEMProblem):
ATinv = self.Solver(AT, **self.solverOpts)
for src in self.survey.getSrcByFreq(freq):
ftype = self._fieldType + 'Solution'
u_src = u[src, ftype]
u_src = u[src, self._solutionType]
for rx in src.rxList:
PTv = rx.evalDeriv(src, self.mesh, u, v[src, rx], adjoint=True) # wrt u, need possibility wrt m
df_duTFun = getattr(u, '_%sDeriv_u'%rx.projField, None)
df_duT = df_duTFun(src, PTv, adjoint=True)
df_duTFun = getattr(u, '_%sDeriv'%rx.projField, None)
df_duT, df_dmT = df_duTFun(src, None, PTv, adjoint=True)
ATinvdf_duT = ATinv * df_duT
dA_dmT = self.getADeriv_m(freq, u_src, ATinvdf_duT, adjoint=True)
dRHS_dmT = self.getRHSDeriv_m(freq,src, ATinvdf_duT, adjoint=True)
dA_dmT = self.getADeriv(freq, u_src, ATinvdf_duT, adjoint=True)
dRHS_dmT = self.getRHSDeriv(freq, src, ATinvdf_duT, adjoint=True)
du_dmT = -dA_dmT + dRHS_dmT
df_dmFun = getattr(u, '_%sDeriv_m'%rx.projField, None)
dfT_dm = df_dmFun(src, PTv, adjoint=True)
df_dmT = df_dmT + du_dmT
du_dmT += dfT_dm
# TODO: this should be taken care of by the reciever
# TODO: this should be taken care of by the reciever?
real_or_imag = rx.projComp
if real_or_imag is 'real':
Jtv += np.array(du_dmT,dtype=complex).real
Jtv += np.array(df_dmT, dtype=complex).real
elif real_or_imag is 'imag':
Jtv += - np.array(du_dmT,dtype=complex).real
Jtv += - np.array(df_dmT, dtype=complex).real
else:
raise Exception('Must be real or imag')
@@ -174,10 +158,10 @@ class BaseFDEMProblem(BaseEMProblem):
:return: S_m, S_e (nE or nF, nSrc)
"""
Srcs = self.survey.getSrcByFreq(freq)
if self._eqLocs is 'FE':
if self._formulation is 'EB':
S_m = np.zeros((self.mesh.nF,len(Srcs)), dtype=complex)
S_e = np.zeros((self.mesh.nE,len(Srcs)), dtype=complex)
elif self._eqLocs is 'EF':
elif self._formulation is 'HJ':
S_m = np.zeros((self.mesh.nE,len(Srcs)), dtype=complex)
S_e = np.zeros((self.mesh.nF,len(Srcs)), dtype=complex)
@@ -213,9 +197,9 @@ class Problem_e(BaseFDEMProblem):
:param SimPEG.Mesh mesh: mesh
"""
_fieldType = 'e'
_eqLocs = 'FE'
fieldsPair = Fields_e
_solutionType = 'eSolution'
_formulation = 'EB'
fieldsPair = Fields_e
def __init__(self, mesh, **kwargs):
BaseFDEMProblem.__init__(self, mesh, **kwargs)
@@ -239,7 +223,7 @@ class Problem_e(BaseFDEMProblem):
return C.T*MfMui*C + 1j*omega(freq)*MeSigma
def getADeriv_m(self, freq, u, v, adjoint=False):
def getADeriv(self, freq, u, v, adjoint=False):
"""
Product of the derivative of our system matrix with respect to the model and a vector
@@ -280,7 +264,7 @@ class Problem_e(BaseFDEMProblem):
return C.T * (MfMui * S_m) -1j * omega(freq) * S_e
def getRHSDeriv_m(self, freq, src, v, adjoint=False):
def getRHSDeriv(self, freq, src, v, adjoint=False):
"""
Derivative of the right hand side with respect to the model
@@ -324,9 +308,9 @@ class Problem_b(BaseFDEMProblem):
:param SimPEG.Mesh mesh: mesh
"""
_fieldType = 'b'
_eqLocs = 'FE'
fieldsPair = Fields_b
_solutionType = 'bSolution'
_formulation = 'EB'
fieldsPair = Fields_b
def __init__(self, mesh, **kwargs):
BaseFDEMProblem.__init__(self, mesh, **kwargs)
@@ -354,7 +338,7 @@ class Problem_b(BaseFDEMProblem):
return MfMui.T*A
return A
def getADeriv_m(self, freq, u, v, adjoint=False):
def getADeriv(self, freq, u, v, adjoint=False):
"""
Product of the derivative of our system matrix with respect to the model and a vector
@@ -411,7 +395,7 @@ class Problem_b(BaseFDEMProblem):
return RHS
def getRHSDeriv_m(self, freq, src, v, adjoint=False):
def getRHSDeriv(self, freq, src, v, adjoint=False):
"""
Derivative of the right hand side with respect to the model
@@ -472,9 +456,9 @@ class Problem_j(BaseFDEMProblem):
:param SimPEG.Mesh mesh: mesh
"""
_fieldType = 'j'
_eqLocs = 'EF'
fieldsPair = Fields_j
_solutionType = 'jSolution'
_formulation = 'HJ'
fieldsPair = Fields_j
def __init__(self, mesh, **kwargs):
BaseFDEMProblem.__init__(self, mesh, **kwargs)
@@ -503,7 +487,7 @@ class Problem_j(BaseFDEMProblem):
return A
def getADeriv_m(self, freq, u, v, adjoint=False):
def getADeriv(self, freq, u, v, adjoint=False):
"""
Product of the derivative of our system matrix with respect to the model and a vector
@@ -524,16 +508,16 @@ class Problem_j(BaseFDEMProblem):
MeMuI = self.MeMuI
MfRho = self.MfRho
C = self.mesh.edgeCurl
MfRhoDeriv_m = self.MfRhoDeriv(u)
MfRhoDeriv = self.MfRhoDeriv(u)
if adjoint:
if self._makeASymmetric is True:
v = MfRho * v
return MfRhoDeriv_m.T * (C * (MeMuI.T * (C.T * v)))
return MfRhoDeriv.T * (C * (MeMuI.T * (C.T * v)))
if self._makeASymmetric is True:
return MfRho.T * (C * ( MeMuI * (C.T * (MfRhoDeriv_m * v) )))
return C * (MeMuI * (C.T * (MfRhoDeriv_m * v)))
return MfRho.T * (C * ( MeMuI * (C.T * (MfRhoDeriv * v) )))
return C * (MeMuI * (C.T * (MfRhoDeriv * v)))
def getRHS(self, freq):
@@ -560,7 +544,7 @@ class Problem_j(BaseFDEMProblem):
return RHS
def getRHSDeriv_m(self, freq, src, v, adjoint=False):
def getRHSDeriv(self, freq, src, v, adjoint=False):
"""
Derivative of the right hand side with respect to the model
@@ -610,9 +594,9 @@ class Problem_h(BaseFDEMProblem):
:param SimPEG.Mesh mesh: mesh
"""
_fieldType = 'h'
_eqLocs = 'EF'
fieldsPair = Fields_h
_solutionType = 'hSolution'
_formulation = 'HJ'
fieldsPair = Fields_h
def __init__(self, mesh, **kwargs):
BaseFDEMProblem.__init__(self, mesh, **kwargs)
@@ -635,7 +619,7 @@ class Problem_h(BaseFDEMProblem):
return C.T * (MfRho * C) + 1j*omega(freq)*MeMu
def getADeriv_m(self, freq, u, v, adjoint=False):
def getADeriv(self, freq, u, v, adjoint=False):
"""
Product of the derivative of our system matrix with respect to the model and a vector
@@ -652,11 +636,11 @@ class Problem_h(BaseFDEMProblem):
MeMu = self.MeMu
C = self.mesh.edgeCurl
MfRhoDeriv_m = self.MfRhoDeriv(C*u)
MfRhoDeriv = self.MfRhoDeriv(C*u)
if adjoint:
return MfRhoDeriv_m.T * (C * v)
return C.T * (MfRhoDeriv_m * v)
return MfRhoDeriv.T * (C * v)
return C.T * (MfRhoDeriv * v)
def getRHS(self, freq):
"""
@@ -677,7 +661,7 @@ class Problem_h(BaseFDEMProblem):
return S_m + C.T * ( MfRho * S_e )
def getRHSDeriv_m(self, freq, src, v, adjoint=False):
def getRHSDeriv(self, freq, src, v, adjoint=False):
"""
Derivative of the right hand side with respect to the model
File diff suppressed because it is too large Load Diff
+117 -79
View File
@@ -1,7 +1,7 @@
from SimPEG import Survey, Problem, Utils, np, sp
from scipy.constants import mu_0
from SimPEG.EM.Utils import *
from SimPEG.Utils import Zero
from SimPEG.Utils import Zero
class BaseSrc(Survey.BaseSrc):
"""
@@ -14,7 +14,7 @@ class BaseSrc(Survey.BaseSrc):
def eval(self, prob):
"""
Evaluate the source terms.
Evaluate the source terms.
- :math:`S_m` : magnetic source term
- :math:`S_e` : electric source term
@@ -36,12 +36,12 @@ class BaseSrc(Survey.BaseSrc):
:param numpy.ndarray v: vector to take product with
:param bool adjoint: adjoint?
:rtype: (numpy.ndarray, numpy.ndarray)
:return: tuple with magnetic source term and electric source term derivatives times a vector
:return: tuple with magnetic source term and electric source term derivatives times a vector
"""
if v is not None:
return self.S_mDeriv(prob,v,adjoint), self.S_eDeriv(prob,v,adjoint)
if v is not None:
return self.S_mDeriv(prob, v, adjoint), self.S_eDeriv(prob, v, adjoint)
else:
return lambda v: self.S_mDeriv(prob,v,adjoint), lambda v: self.S_eDeriv(prob,v,adjoint)
return lambda v: self.S_mDeriv(prob, v, adjoint), lambda v: self.S_eDeriv(prob, v, adjoint)
def bPrimary(self, prob):
"""
@@ -49,7 +49,7 @@ class BaseSrc(Survey.BaseSrc):
:param Problem prob: FDEM Problem
:rtype: numpy.ndarray
:return: primary magnetic flux density
:return: primary magnetic flux density
"""
return Zero()
@@ -59,7 +59,7 @@ class BaseSrc(Survey.BaseSrc):
:param Problem prob: FDEM Problem
:rtype: numpy.ndarray
:return: primary magnetic field
:return: primary magnetic field
"""
return Zero()
@@ -69,7 +69,7 @@ class BaseSrc(Survey.BaseSrc):
:param Problem prob: FDEM Problem
:rtype: numpy.ndarray
:return: primary electric field
:return: primary electric field
"""
return Zero()
@@ -79,13 +79,13 @@ class BaseSrc(Survey.BaseSrc):
:param Problem prob: FDEM Problem
:rtype: numpy.ndarray
:return: primary current density
:return: primary current density
"""
return Zero()
def S_m(self, prob):
"""
Magnetic source term
Magnetic source term
:param Problem prob: FDEM Problem
:rtype: numpy.ndarray
@@ -95,7 +95,7 @@ class BaseSrc(Survey.BaseSrc):
def S_e(self, prob):
"""
Electric source term
Electric source term
:param Problem prob: FDEM Problem
:rtype: numpy.ndarray
@@ -136,15 +136,26 @@ class RawVec_e(BaseSrc):
:param list rxList: receiver list
:param float freq: frequency
:param numpy.array S_e: electric source term
:param bool integrate: Integrate the source term (multiply by Me) [True]
"""
def __init__(self, rxList, freq, S_e): #, ePrimary=None, bPrimary=None, hPrimary=None, jPrimary=None):
self._S_e = np.array(S_e,dtype=complex)
def __init__(self, rxList, freq, S_e, integrate=True): #, ePrimary=None, bPrimary=None, hPrimary=None, jPrimary=None):
self._S_e = np.array(S_e, dtype=complex)
self.freq = float(freq)
self.integrate = integrate
BaseSrc.__init__(self, rxList)
def S_e(self, prob):
"""
Electric source term
:param Problem prob: FDEM Problem
:rtype: numpy.ndarray
:return: electric source term on mesh
"""
if prob._formulation is 'EB' and self.integrate is True:
return prob.Me * self._S_e
return self._S_e
@@ -155,10 +166,11 @@ class RawVec_m(BaseSrc):
:param float freq: frequency
:param rxList: receiver list
:param numpy.array S_m: magnetic source term
:param bool integrate: Integrate the source term (multiply by Me) [True]
"""
def __init__(self, rxList, freq, S_m, integrate = True): #ePrimary=Zero(), bPrimary=Zero(), hPrimary=Zero(), jPrimary=Zero()):
self._S_m = np.array(S_m,dtype=complex)
def __init__(self, rxList, freq, S_m, integrate=True): #ePrimary=Zero(), bPrimary=Zero(), hPrimary=Zero(), jPrimary=Zero()):
self._S_m = np.array(S_m, dtype=complex)
self.freq = float(freq)
self.integrate = integrate
@@ -166,12 +178,14 @@ class RawVec_m(BaseSrc):
def S_m(self, prob):
"""
Magnetic source term
Magnetic source term
:param Problem prob: FDEM Problem
:rtype: numpy.ndarray
:return: magnetic source term on mesh
"""
if prob._formulation is 'HJ' and self.integrate is True:
return prob.Me * self._S_m
return self._S_m
@@ -183,36 +197,51 @@ class RawVec(BaseSrc):
:param float freq: frequency
:param numpy.array S_m: magnetic source term
:param numpy.array S_e: electric source term
:param bool integrate: Integrate the source term (multiply by Me) [True]
"""
def __init__(self, rxList, freq, S_m, S_e, integrate = True):
self._S_m = np.array(S_m,dtype=complex)
self._S_e = np.array(S_e,dtype=complex)
def __init__(self, rxList, freq, S_m, S_e, integrate=True):
self._S_m = np.array(S_m, dtype=complex)
self._S_e = np.array(S_e, dtype=complex)
self.freq = float(freq)
self.integrate = integrate
BaseSrc.__init__(self, rxList)
def S_m(self, prob):
if prob._eqLocs is 'EF' and self.integrate is True:
"""
Magnetic source term
:param Problem prob: FDEM Problem
:rtype: numpy.ndarray
:return: magnetic source term on mesh
"""
if prob._formulation is 'HJ' and self.integrate is True:
return prob.Me * self._S_m
return self._S_m
def S_e(self, prob):
if prob._eqLocs is 'FE' and self.integrate is True:
"""
Electric source term
:param Problem prob: FDEM Problem
:rtype: numpy.ndarray
:return: electric source term on mesh
"""
if prob._formulation is 'EB' and self.integrate is True:
return prob.Me * self._S_e
return self._S_e
class MagDipole(BaseSrc):
"""
"""
Point magnetic dipole source calculated by taking the curl of a magnetic
vector potential. By taking the discrete curl, we ensure that the magnetic
flux density is divergence free (no magnetic monopoles!).
flux density is divergence free (no magnetic monopoles!).
This approach uses a primary-secondary in frequency. Here we show the
derivation for E-B formulation noting that similar steps are followed for
the H-J formulation.
.. math::
.. math::
\mathbf{C} \mathbf{e} + i \omega \mathbf{b} = \mathbf{s_m} \\\\
{\mathbf{C}^T \mathbf{M_{\mu^{-1}}^f} \mathbf{b} - \mathbf{M_{\sigma}^e} \mathbf{e} = \mathbf{s_e}}
@@ -225,17 +254,17 @@ class MagDipole(BaseSrc):
and define a zero-frequency primary problem, noting that the source is
generated by a divergence free electric current
.. math::
.. math::
\mathbf{C} \mathbf{e^P} = \mathbf{s_m^P} = 0 \\\\
{\mathbf{C}^T \mathbf{{M_{\mu^{-1}}^f}^P} \mathbf{b^P} - \mathbf{M_{\sigma}^e} \mathbf{e^P} = \mathbf{M^e} \mathbf{s_e^P}}
Since :math:`\mathbf{e^P}` is curl-free, divergence-free, we assume that there is no constant field background, the :math:`\mathbf{e^P} = 0`, so our primary problem is
Since :math:`\mathbf{e^P}` is curl-free, divergence-free, we assume that there is no constant field background, the :math:`\mathbf{e^P} = 0`, so our primary problem is
.. math::
.. math::
\mathbf{e^P} = 0 \\\\
{\mathbf{C}^T \mathbf{{M_{\mu^{-1}}^f}^P} \mathbf{b^P} = \mathbf{s_e^P}}
Our secondary problem is then
Our secondary problem is then
.. math::
\mathbf{C} \mathbf{e^S} + i \omega \mathbf{b^S} = - i \omega \mathbf{b^P} \\\\
@@ -245,15 +274,15 @@ class MagDipole(BaseSrc):
:param float freq: frequency
:param numpy.ndarray loc: source location (ie: :code:`np.r_[xloc,yloc,zloc]`)
:param string orientation: 'X', 'Y', 'Z'
:param float moment: magnetic dipole moment
:param float mu: background magnetic permeability
:param float moment: magnetic dipole moment
:param float mu: background magnetic permeability
"""
#TODO: right now, orientation doesn't actually do anything! The methods in SrcUtils should take care of that
def __init__(self, rxList, freq, loc, orientation='Z', moment=1., mu = mu_0):
def __init__(self, rxList, freq, loc, orientation='Z', moment=1., mu=mu_0):
self.freq = float(freq)
self.loc = loc
self.orientation = orientation
assert orientation in ['X','Y','Z'], "Orientation (right now) doesn't actually do anything! The methods in SrcUtils should take care of this..."
self.moment = moment
self.mu = mu
self.integrate = False
@@ -265,17 +294,17 @@ class MagDipole(BaseSrc):
:param Problem prob: FDEM problem
:rtype: numpy.ndarray
:return: primary magnetic field
:return: primary magnetic field
"""
eqLocs = prob._eqLocs
formulation = prob._formulation
if eqLocs is 'FE':
if formulation is 'EB':
gridX = prob.mesh.gridEx
gridY = prob.mesh.gridEy
gridZ = prob.mesh.gridEz
C = prob.mesh.edgeCurl
elif eqLocs is 'EF':
elif formulation is 'HJ':
gridX = prob.mesh.gridFx
gridY = prob.mesh.gridFy
gridZ = prob.mesh.gridFz
@@ -303,10 +332,10 @@ class MagDipole(BaseSrc):
:param Problem prob: FDEM problem
:rtype: numpy.ndarray
:return: primary magnetic field
:return: primary magnetic field
"""
b = self.bPrimary(prob)
return h_from_b(prob,b)
return 1./self.mu * b
def S_m(self, prob):
"""
@@ -314,10 +343,12 @@ class MagDipole(BaseSrc):
:param Problem prob: FDEM problem
:rtype: numpy.ndarray
:return: primary magnetic field
:return: primary magnetic field
"""
b_p = self.bPrimary(prob)
if prob._formulation is 'HJ':
b_p = prob.Me * b_p
return -1j*omega(self.freq)*b_p
def S_e(self, prob):
@@ -326,21 +357,21 @@ class MagDipole(BaseSrc):
:param Problem prob: FDEM problem
:rtype: numpy.ndarray
:return: primary magnetic field
:return: primary magnetic field
"""
if all(np.r_[self.mu] == np.r_[prob.curModel.mu]):
return Zero()
else:
eqLocs = prob._eqLocs
formulation = prob._formulation
if eqLocs is 'FE':
if formulation is 'EB':
mui_s = prob.curModel.mui - 1./self.mu
MMui_s = prob.mesh.getFaceInnerProduct(mui_s)
C = prob.mesh.edgeCurl
elif eqLocs is 'EF':
elif formulation is 'HJ':
mu_s = prob.curModel.mu - self.mu
MMui_s = prob.mesh.getEdgeInnerProduct(mu_s,invMat=True)
MMui_s = prob.mesh.getEdgeInnerProduct(mu_s, invMat=True)
C = prob.mesh.edgeCurl.T
return -C.T * (MMui_s * self.bPrimary(prob))
@@ -353,21 +384,20 @@ class MagDipole_Bfield(BaseSrc):
fields from a magnetic dipole. No discrete curl is taken, so the magnetic
flux density may not be strictly divergence free.
This approach uses a primary-secondary in frequency in the same fashion as the MagDipole.
This approach uses a primary-secondary in frequency in the same fashion as the MagDipole.
:param list rxList: receiver list
:param float freq: frequency
:param numpy.ndarray loc: source location (ie: :code:`np.r_[xloc,yloc,zloc]`)
:param string orientation: 'X', 'Y', 'Z'
:param float moment: magnetic dipole moment
:param float mu: background magnetic permeability
:param float moment: magnetic dipole moment
:param float mu: background magnetic permeability
"""
#TODO: right now, orientation doesn't actually do anything! The methods in SrcUtils should take care of that
#TODO: neither does moment
def __init__(self, rxList, freq, loc, orientation='Z', moment=1., mu = mu_0):
self.freq = float(freq)
self.loc = loc
assert orientation in ['X','Y','Z'], "Orientation (right now) doesn't actually do anything! The methods in SrcUtils should take care of this..."
self.orientation = orientation
self.moment = moment
self.mu = mu
@@ -379,18 +409,18 @@ class MagDipole_Bfield(BaseSrc):
:param Problem prob: FDEM problem
:rtype: numpy.ndarray
:return: primary magnetic field
:return: primary magnetic field
"""
eqLocs = prob._eqLocs
formulation = prob._formulation
if eqLocs is 'FE':
if formulation is 'EB':
gridX = prob.mesh.gridFx
gridY = prob.mesh.gridFy
gridZ = prob.mesh.gridFz
C = prob.mesh.edgeCurl
elif eqLocs is 'EF':
elif formulation is 'HJ':
gridX = prob.mesh.gridEx
gridY = prob.mesh.gridEy
gridZ = prob.mesh.gridEz
@@ -418,10 +448,10 @@ class MagDipole_Bfield(BaseSrc):
:param Problem prob: FDEM problem
:rtype: numpy.ndarray
:return: primary magnetic field
:return: primary magnetic field
"""
b = self.bPrimary(prob)
return h_from_b(prob, b)
return 1/self.mu * b
def S_m(self, prob):
"""
@@ -429,9 +459,11 @@ class MagDipole_Bfield(BaseSrc):
:param Problem prob: FDEM problem
:rtype: numpy.ndarray
:return: primary magnetic field
:return: primary magnetic field
"""
b = self.bPrimary(prob)
if prob._formulation is 'HJ':
b = prob.Me * b
return -1j*omega(self.freq)*b
def S_e(self, prob):
@@ -440,20 +472,20 @@ class MagDipole_Bfield(BaseSrc):
:param Problem prob: FDEM problem
:rtype: numpy.ndarray
:return: primary magnetic field
:return: primary magnetic field
"""
if all(np.r_[self.mu] == np.r_[prob.curModel.mu]):
return Zero()
else:
eqLocs = prob._eqLocs
formulation = prob._formulation
if eqLocs is 'FE':
if formulation is 'EB':
mui_s = prob.curModel.mui - 1./self.mu
MMui_s = prob.mesh.getFaceInnerProduct(mui_s)
C = prob.mesh.edgeCurl
elif eqLocs is 'EF':
elif formulation is 'HJ':
mu_s = prob.curModel.mu - self.mu
MMui_s = prob.mesh.getEdgeInnerProduct(mu_s,invMat=True)
MMui_s = prob.mesh.getEdgeInnerProduct(mu_s, invMat=True)
C = prob.mesh.edgeCurl.T
return -C.T * (MMui_s * self.bPrimary(prob))
@@ -463,22 +495,22 @@ class CircularLoop(BaseSrc):
"""
Circular loop magnetic source calculated by taking the curl of a magnetic
vector potential. By taking the discrete curl, we ensure that the magnetic
flux density is divergence free (no magnetic monopoles!).
flux density is divergence free (no magnetic monopoles!).
This approach uses a primary-secondary in frequency in the same fashion as the MagDipole.
This approach uses a primary-secondary in frequency in the same fashion as the MagDipole.
:param list rxList: receiver list
:param float freq: frequency
:param numpy.ndarray loc: source location (ie: :code:`np.r_[xloc,yloc,zloc]`)
:param string orientation: 'X', 'Y', 'Z'
:param float moment: magnetic dipole moment
:param float mu: background magnetic permeability
:param float moment: magnetic dipole moment
:param float mu: background magnetic permeability
"""
#TODO: right now, orientation doesn't actually do anything! The methods in SrcUtils should take care of that
def __init__(self, rxList, freq, loc, orientation='Z', radius = 1., mu=mu_0):
def __init__(self, rxList, freq, loc, orientation='Z', radius=1., mu=mu_0):
self.freq = float(freq)
self.orientation = orientation
assert orientation in ['X','Y','Z'], "Orientation (right now) doesn't actually do anything! The methods in SrcUtils should take care of this..."
self.radius = radius
self.mu = mu
self.loc = loc
@@ -491,17 +523,17 @@ class CircularLoop(BaseSrc):
:param Problem prob: FDEM problem
:rtype: numpy.ndarray
:return: primary magnetic field
:return: primary magnetic field
"""
eqLocs = prob._eqLocs
formulation = prob._formulation
if eqLocs is 'FE':
if formulation is 'EB':
gridX = prob.mesh.gridEx
gridY = prob.mesh.gridEy
gridZ = prob.mesh.gridEz
C = prob.mesh.edgeCurl
elif eqLocs is 'EF':
elif formulation is 'HJ':
gridX = prob.mesh.gridFx
gridY = prob.mesh.gridFy
gridZ = prob.mesh.gridFz
@@ -528,7 +560,7 @@ class CircularLoop(BaseSrc):
:param Problem prob: FDEM problem
:rtype: numpy.ndarray
:return: primary magnetic field
:return: primary magnetic field
"""
b = self.bPrimary(prob)
return 1./self.mu*b
@@ -539,9 +571,11 @@ class CircularLoop(BaseSrc):
:param Problem prob: FDEM problem
:rtype: numpy.ndarray
:return: primary magnetic field
:return: primary magnetic field
"""
b = self.bPrimary(prob)
if prob._formulation is 'HJ':
b = prob.Me * b
return -1j*omega(self.freq)*b
def S_e(self, prob):
@@ -550,22 +584,26 @@ class CircularLoop(BaseSrc):
:param Problem prob: FDEM problem
:rtype: numpy.ndarray
:return: primary magnetic field
:return: primary magnetic field
"""
if all(np.r_[self.mu] == np.r_[prob.curModel.mu]):
return Zero()
else:
eqLocs = prob._eqLocs
formulation = prob._formulation
if eqLocs is 'FE':
if formulation is 'EB':
mui_s = prob.curModel.mui - 1./self.mu
MMui_s = prob.mesh.getFaceInnerProduct(mui_s)
C = prob.mesh.edgeCurl
elif eqLocs is 'EF':
elif formulation is 'HJ':
mu_s = prob.curModel.mu - self.mu
MMui_s = prob.mesh.getEdgeInnerProduct(mu_s,invMat=True)
MMui_s = prob.mesh.getEdgeInnerProduct(mu_s, invMat=True)
C = prob.mesh.edgeCurl.T
return -C.T * (MMui_s * self.bPrimary(prob))
+43 -36
View File
@@ -3,6 +3,7 @@ from SimPEG.EM.Utils import *
from scipy.constants import mu_0
from SimPEG.Utils import Zero, Identity
import SrcFDEM as Src
from SimPEG import sp
####################################################
@@ -18,33 +19,33 @@ class Rx(SimPEG.Survey.BaseRx):
"""
knownRxTypes = {
'exr':['e', 'Ex', 'real'],
'eyr':['e', 'Ey', 'real'],
'ezr':['e', 'Ez', 'real'],
'exi':['e', 'Ex', 'imag'],
'eyi':['e', 'Ey', 'imag'],
'ezi':['e', 'Ez', 'imag'],
'exr':['e', 'x', 'real'],
'eyr':['e', 'y', 'real'],
'ezr':['e', 'z', 'real'],
'exi':['e', 'x', 'imag'],
'eyi':['e', 'y', 'imag'],
'ezi':['e', 'z', 'imag'],
'bxr':['b', 'Fx', 'real'],
'byr':['b', 'Fy', 'real'],
'bzr':['b', 'Fz', 'real'],
'bxi':['b', 'Fx', 'imag'],
'byi':['b', 'Fy', 'imag'],
'bzi':['b', 'Fz', 'imag'],
'bxr':['b', 'x', 'real'],
'byr':['b', 'y', 'real'],
'bzr':['b', 'z', 'real'],
'bxi':['b', 'x', 'imag'],
'byi':['b', 'y', 'imag'],
'bzi':['b', 'z', 'imag'],
'jxr':['j', 'Fx', 'real'],
'jyr':['j', 'Fy', 'real'],
'jzr':['j', 'Fz', 'real'],
'jxi':['j', 'Fx', 'imag'],
'jyi':['j', 'Fy', 'imag'],
'jzi':['j', 'Fz', 'imag'],
'jxr':['j', 'x', 'real'],
'jyr':['j', 'y', 'real'],
'jzr':['j', 'z', 'real'],
'jxi':['j', 'x', 'imag'],
'jyi':['j', 'y', 'imag'],
'jzi':['j', 'z', 'imag'],
'hxr':['h', 'Ex', 'real'],
'hyr':['h', 'Ey', 'real'],
'hzr':['h', 'Ez', 'real'],
'hxi':['h', 'Ex', 'imag'],
'hyi':['h', 'Ey', 'imag'],
'hzi':['h', 'Ez', 'imag'],
'hxr':['h', 'x', 'real'],
'hyr':['h', 'y', 'real'],
'hzr':['h', 'z', 'real'],
'hxi':['h', 'x', 'imag'],
'hyi':['h', 'y', 'imag'],
'hzi':['h', 'z', 'imag'],
}
radius = None
@@ -56,17 +57,16 @@ class Rx(SimPEG.Survey.BaseRx):
"""Field Type projection (e.g. e b ...)"""
return self.knownRxTypes[self.rxType][0]
@property
def projGLoc(self):
"""Grid Location projection (e.g. Ex Fy ...)"""
return self.knownRxTypes[self.rxType][1]
@property
def projComp(self):
"""Component projection (real/imag)"""
return self.knownRxTypes[self.rxType][2]
def eval(self, src, mesh, f):
def projGLoc(self, u):
"""Grid Location projection (e.g. Ex Fy ...)"""
return u._GLoc(self.rxType[0]) + self.knownRxTypes[self.rxType][1]
def eval(self, src, mesh, u):
"""
Project fields to recievers to get data.
@@ -76,24 +76,30 @@ class Rx(SimPEG.Survey.BaseRx):
:rtype: numpy.ndarray
:return: fields projected to recievers
"""
P = self.getP(mesh) # get interpolation to recievers
u_part_complex = f[src, self.projField]
real_or_imag = self.projComp # get the real or imag component
# projGLoc = u._GLoc(self.knownRxTypes[self.rxType][0])
# projGLoc += self.knownRxTypes[self.rxType][1]
P = self.getP(mesh, self.projGLoc(u))
u_part_complex = u[src, self.projField]
# get the real or imag component
real_or_imag = self.projComp
u_part = getattr(u_part_complex, real_or_imag)
return P*u_part
def evalDeriv(self, src, mesh, f, v, adjoint=False):
def evalDeriv(self, src, mesh, u, v, adjoint=False):
"""
Derivative of projected fields with respect to the inversion model times a vector.
:param Source src: FDEM source
:param Mesh mesh: mesh used
:param Fields f: fields object
:param Fields u: fields object
:param numpy.ndarray v: vector to multiply
:rtype: numpy.ndarray
:return: fields projected to recievers
"""
P = self.getP(mesh)
P = self.getP(mesh, self.projGLoc(u))
if not adjoint:
Pv_complex = P * v
@@ -185,3 +191,4 @@ class Survey(SimPEG.Survey.BaseSurvey):
def evalDeriv(self, u):
raise Exception('Use Receivers to project fields deriv.')
-33
View File
@@ -13,37 +13,4 @@ def k(freq, sigma, mu=mu_0, eps=epsilon_0):
beta = w * np.sqrt( mu*eps/2 * ( np.sqrt(1. + (sigma / (eps*w))**2 ) - 1) )
return alp - 1j*beta
# Constitutive relations
def e_from_j(prob,j):
eqLocs = prob._eqLocs
if eqLocs is 'FE':
MSigmaI = prob.MeSigmaI
elif eqLocs is 'EF':
MSigmaI = prob.MfRho
return MSigmaI*j
def j_from_e(prob,e):
eqLocs = prob._eqLocs
if eqLocs is 'FE':
MSigma = prob.MeSigma
elif eqLocs is 'EF':
MSigma = prob.MfRhoI
return MSigma*e
def b_from_h(prob,h):
eqLocs = prob._eqLocs
if eqLocs is 'FE':
MMu = prob.MfMuiI
elif eqLocs is 'EF':
MMu = prob.MeMu
return MMu*h
def h_from_b(prob,b):
eqLocs = prob._eqLocs
if eqLocs is 'FE':
MMuI = prob.MfMui
elif eqLocs is 'EF':
MMuI = prob.MeMuI
return MMuI*b
+1 -4
View File
@@ -1,5 +1,2 @@
# import Sources
# import Ana
# import Solver
from EMUtils import omega, e_from_j, j_from_e, b_from_h, h_from_b
from EMUtils import omega, k
from AnalyticUtils import MagneticDipoleFields, MagneticDipoleVectorPotential, MagneticLoopVectorPotential
+64 -13
View File
@@ -4,19 +4,28 @@ from SimPEG import EM
import sys
from scipy.constants import mu_0
def getFDEMProblem(fdemType, comp, SrcList, freq, verbose=False):
cs = 5.
ncx, ncy, ncz = 6, 6, 6
npad = 3
FLR = 1e-20 # "zero", so if residual below this --> pass regardless of order
CONDUCTIVITY = 1e1
MU = mu_0
freq = 5e-1
def getFDEMProblem(fdemType, comp, SrcList, freq, useMu=False, verbose=False):
cs = 10.
ncx, ncy, ncz = 0, 0, 0
npad = 8
hx = [(cs,npad,-1.3), (cs,ncx), (cs,npad,1.3)]
hy = [(cs,npad,-1.3), (cs,ncy), (cs,npad,1.3)]
hz = [(cs,npad,-1.3), (cs,ncz), (cs,npad,1.3)]
mesh = Mesh.TensorMesh([hx,hy,hz],['C','C','C'])
mapping = Maps.ExpMap(mesh)
if useMu is True:
mapping = [('sigma', Maps.ExpMap(mesh)), ('mu', Maps.IdentityMap(mesh))]
else:
mapping = Maps.ExpMap(mesh)
x = np.array([np.linspace(-30,-15,3),np.linspace(15,30,3)]) #don't sample right by the source
XYZ = Utils.ndgrid(x,x,np.r_[0.])
x = np.array([np.linspace(-5.*cs,-2.*cs,3),np.linspace(5.*cs,2.*cs,3)]) + cs/4. #don't sample right by the source, slightly off alignment from either staggered grid
XYZ = Utils.ndgrid(x,x,np.linspace(-2.*cs,2.*cs,5))
Rx0 = EM.FDEM.Rx(XYZ, comp)
Src = []
@@ -32,15 +41,15 @@ def getFDEMProblem(fdemType, comp, SrcList, freq, verbose=False):
if fdemType is 'e' or fdemType is 'b':
S_m = np.zeros(mesh.nF)
S_e = np.zeros(mesh.nE)
S_m[Utils.closestPoints(mesh,[0.,0.,0.],'Fz') + np.sum(mesh.vnF[:1])] = 1.
S_e[Utils.closestPoints(mesh,[0.,0.,0.],'Ez') + np.sum(mesh.vnE[:1])] = 1.
S_m[Utils.closestPoints(mesh,[0.,0.,0.],'Fz') + np.sum(mesh.vnF[:1])] = 1e-3
S_e[Utils.closestPoints(mesh,[0.,0.,0.],'Ez') + np.sum(mesh.vnE[:1])] = 1e-3
Src.append(EM.FDEM.Src.RawVec([Rx0], freq, S_m, S_e))
elif fdemType is 'h' or fdemType is 'j':
S_m = np.zeros(mesh.nE)
S_e = np.zeros(mesh.nF)
S_m[Utils.closestPoints(mesh,[0.,0.,0.],'Ez') + np.sum(mesh.vnE[:1])] = 1.
S_e[Utils.closestPoints(mesh,[0.,0.,0.],'Fz') + np.sum(mesh.vnF[:1])] = 1.
S_m[Utils.closestPoints(mesh,[0.,0.,0.],'Ez') + np.sum(mesh.vnE[:1])] = 1e-3
S_e[Utils.closestPoints(mesh,[0.,0.,0.],'Fz') + np.sum(mesh.vnF[:1])] = 1e-3
Src.append(EM.FDEM.Src.RawVec([Rx0], freq, S_m, S_e))
if verbose:
@@ -70,6 +79,48 @@ def getFDEMProblem(fdemType, comp, SrcList, freq, verbose=False):
from pymatsolver import MumpsSolver
prb.Solver = MumpsSolver
except ImportError, e:
pass
prb.Solver = SolverLU
return prb
return prb
def crossCheckTest(SrcList, fdemType1, fdemType2, comp, addrandoms = False, useMu=False, TOL=1e-5, verbose=False):
l2norm = lambda r: np.sqrt(r.dot(r))
prb1 = getFDEMProblem(fdemType1, comp, SrcList, freq, useMu, verbose)
mesh = prb1.mesh
print 'Cross Checking Forward: %s, %s formulations - %s' % (fdemType1, fdemType2, comp)
logsig = np.log(np.ones(mesh.nC)*CONDUCTIVITY)
mu = np.ones(mesh.nC)*MU
if addrandoms is True:
logsig += np.random.randn(mesh.nC)*np.log(CONDUCTIVITY)*1e-1
mu += np.random.randn(mesh.nC)*MU*1e-1
if useMu is True:
m = np.r_[logsig, mu]
else:
m = logsig
survey1 = prb1.survey
d1 = survey1.dpred(m)
if verbose:
print ' Problem 1 solved'
prb2 = getFDEMProblem(fdemType2, comp, SrcList, freq, useMu, verbose)
survey2 = prb2.survey
d2 = survey2.dpred(m)
if verbose:
print ' Problem 2 solved'
r = d2-d1
l2r = l2norm(r)
tol = np.max([TOL*(10**int(np.log10(0.5* (l2norm(d1) + l2norm(d2)) ))),FLR])
print l2norm(d1), l2norm(d2), l2r , tol, l2r < tol
return l2r < tol
+1 -2
View File
@@ -48,8 +48,7 @@ def run(plotIt=True):
freqs = np.logspace(1,3,10)
srcLoc = np.array([0., 0., 10.])
srcList = []
[srcList.append(EM.FDEM.Src.MagDipole([bzi],freq, srcLoc,orientation='Z')) for freq in freqs]
srcList = [EM.FDEM.Src.MagDipole([bzi],freq, srcLoc,orientation='Z') for freq in freqs]
survey = EM.FDEM.Survey(srcList)
prb = EM.FDEM.Problem_b(mesh, mapping=mapping)
+13
View File
@@ -234,6 +234,9 @@ class BaseTensorMesh(BaseMesh):
'Fz' -> z-component of field defined on faces
'N' -> scalar field defined on nodes
'CC' -> scalar field defined on cell centers
'CCVx' -> x-component of vector field defined on cell centers
'CCVy' -> y-component of vector field defined on cell centers
'CCVz' -> z-component of vector field defined on cell centers
"""
if self._meshType == 'CYL' and self.isSymmetric and locType in ['Ex','Ez','Fy']:
raise Exception('Symmetric CylMesh does not support %s interpolation, as this variable does not exist.' % locType)
@@ -257,6 +260,16 @@ class BaseTensorMesh(BaseMesh):
Q = sp.hstack(components)
elif locType in ['CC', 'N']:
Q = Utils.interpmat(loc, *self.getTensor(locType))
elif locType in ['CCVx', 'CCVy', 'CCVz']:
Q = Utils.interpmat(loc, *self.getTensor('CC'))
Z = Utils.spzeros(loc.shape[0],self.nC)
if locType == 'CCVx':
Q = sp.hstack([Q,Z,Z])
elif locType == 'CCVy':
Q = sp.hstack([Z,Q,Z])
elif locType == 'CCVz':
Q = sp.hstack([Z,Z,Q])
else:
raise NotImplementedError('getInterpolationMat: locType=='+locType+' and mesh.dim=='+str(self.dim))
+5 -2
View File
@@ -34,7 +34,7 @@ class BaseRx(object):
"""Number of data in the receiver."""
return self.locs.shape[0]
def getP(self, mesh):
def getP(self, mesh, projGLoc=None):
"""
Returns the projection matrices as a
list for all components collected by
@@ -47,7 +47,10 @@ class BaseRx(object):
if mesh in self._Ps:
return self._Ps[mesh]
P = mesh.getInterpolationMat(self.locs, self.projGLoc)
if projGLoc is None:
projGLoc = self.projGLoc
P = mesh.getInterpolationMat(self.locs, projGLoc)
if self.storeProjections:
self._Ps[mesh] = P
return P
+1 -1
View File
@@ -15,7 +15,7 @@ import Directives
import Inversion
import Tests
__version__ = '0.1.9'
__version__ = '0.1.10'
__author__ = 'Rowan Cockett'
__license__ = 'MIT'
__copyright__ = 'Copyright 2014 Rowan Cockett'
+2 -2
View File
@@ -51,9 +51,9 @@ copyright = u'2013, SimPEG Developers'
# built documents.
#
# The short X.Y version.
version = '0.1.9'
version = '0.1.10'
# The full version, including alpha/beta/rc tags.
release = '0.1.9'
release = '0.1.10'
# The language for content autogenerated by Sphinx. Refer to documentation
# for a list of supported languages.
+1 -1
View File
@@ -77,7 +77,7 @@ with open("README.rst") as f:
setup(
name = "SimPEG",
version = "0.1.9",
version = "0.1.10",
packages = find_packages(),
install_requires = ['numpy>=1.7',
'scipy>=0.13',
+30 -80
View File
@@ -3,125 +3,75 @@ from SimPEG import *
from SimPEG import EM
import sys
from scipy.constants import mu_0
from SimPEG.EM.Utils.testingUtils import getFDEMProblem
from SimPEG.EM.Utils.testingUtils import getFDEMProblem, crossCheckTest
testEB = True
testHJ = True
testEJ = True
testBH = True
verbose = False
TOL = 1e-5
FLR = 1e-20 # "zero", so if residual below this --> pass regardless of order
CONDUCTIVITY = 1e1
MU = mu_0
freq = 1e-1
addrandoms = True
TOLEBHJ = 1e-5
TOLEJHB = 1 # averaging and more sensitive to boundary condition violations (ie. the impact of violating the boundary conditions in each case is different.)
#TODO: choose better testing parameters to lower this
SrcList = ['RawVec', 'MagDipole_Bfield', 'MagDipole', 'CircularLoop']
def crossCheckTest(fdemType, comp):
l2norm = lambda r: np.sqrt(r.dot(r))
prb1 = getFDEMProblem(fdemType, comp, SrcList, freq, verbose)
mesh = prb1.mesh
print 'Cross Checking Forward: %s formulation - %s' % (fdemType, comp)
m = np.log(np.ones(mesh.nC)*CONDUCTIVITY)
mu = np.log(np.ones(mesh.nC)*MU)
if addrandoms is True:
m = m + np.random.randn(mesh.nC)*np.log(CONDUCTIVITY)*1e-1
mu = mu + np.random.randn(mesh.nC)*MU*1e-1
# prb1.PropMap.PropModel.mu = mu
# prb1.PropMap.PropModel.mui = 1./mu
survey1 = prb1.survey
d1 = survey1.dpred(m)
if verbose:
print ' Problem 1 solved'
if fdemType == 'e':
prb2 = getFDEMProblem('b', comp, SrcList, freq, verbose)
elif fdemType == 'b':
prb2 = getFDEMProblem('e', comp, SrcList, freq, verbose)
elif fdemType == 'j':
prb2 = getFDEMProblem('h', comp, SrcList, freq, verbose)
elif fdemType == 'h':
prb2 = getFDEMProblem('j', comp, SrcList, freq, verbose)
else:
raise NotImplementedError()
# prb2.mu = mu
survey2 = prb2.survey
d2 = survey2.dpred(m)
if verbose:
print ' Problem 2 solved'
r = d2-d1
l2r = l2norm(r)
tol = np.max([TOL*(10**int(np.log10(l2norm(d1)))),FLR])
print l2norm(d1), l2norm(d2), l2r , tol, l2r < tol
return l2r < tol
class FDEM_CrossCheck(unittest.TestCase):
if testEB:
def test_EB_CrossCheck_exr_Eform(self):
self.assertTrue(crossCheckTest('e', 'exr'))
self.assertTrue(crossCheckTest(SrcList, 'e', 'b', 'exr', verbose=verbose))
def test_EB_CrossCheck_eyr_Eform(self):
self.assertTrue(crossCheckTest('e', 'eyr'))
self.assertTrue(crossCheckTest(SrcList, 'e', 'b', 'eyr', verbose=verbose))
def test_EB_CrossCheck_ezr_Eform(self):
self.assertTrue(crossCheckTest('e', 'ezr'))
self.assertTrue(crossCheckTest(SrcList, 'e', 'b', 'ezr', verbose=verbose))
def test_EB_CrossCheck_exi_Eform(self):
self.assertTrue(crossCheckTest('e', 'exi'))
self.assertTrue(crossCheckTest(SrcList, 'e', 'b', 'exi', verbose=verbose))
def test_EB_CrossCheck_eyi_Eform(self):
self.assertTrue(crossCheckTest('e', 'eyi'))
self.assertTrue(crossCheckTest(SrcList, 'e', 'b', 'eyi', verbose=verbose))
def test_EB_CrossCheck_ezi_Eform(self):
self.assertTrue(crossCheckTest('e', 'ezi'))
self.assertTrue(crossCheckTest(SrcList, 'e', 'b', 'ezi', verbose=verbose))
def test_EB_CrossCheck_bxr_Eform(self):
self.assertTrue(crossCheckTest('e', 'bxr'))
self.assertTrue(crossCheckTest(SrcList, 'e', 'b', 'bxr', verbose=verbose))
def test_EB_CrossCheck_byr_Eform(self):
self.assertTrue(crossCheckTest('e', 'byr'))
self.assertTrue(crossCheckTest(SrcList, 'e', 'b', 'byr', verbose=verbose))
def test_EB_CrossCheck_bzr_Eform(self):
self.assertTrue(crossCheckTest('e', 'bzr'))
self.assertTrue(crossCheckTest(SrcList, 'e', 'b', 'bzr', verbose=verbose))
def test_EB_CrossCheck_bxi_Eform(self):
self.assertTrue(crossCheckTest('e', 'bxi'))
self.assertTrue(crossCheckTest(SrcList, 'e', 'b', 'bxi', verbose=verbose))
def test_EB_CrossCheck_byi_Eform(self):
self.assertTrue(crossCheckTest('e', 'byi'))
self.assertTrue(crossCheckTest(SrcList, 'e', 'b', 'byi', verbose=verbose))
def test_EB_CrossCheck_bzi_Eform(self):
self.assertTrue(crossCheckTest('e', 'bzi'))
self.assertTrue(crossCheckTest(SrcList, 'e', 'b', 'bzi', verbose=verbose))
if testHJ:
def test_HJ_CrossCheck_jxr_Jform(self):
self.assertTrue(crossCheckTest('j', 'jxr'))
self.assertTrue(crossCheckTest(SrcList, 'j', 'h', 'jxr', verbose=verbose))
def test_HJ_CrossCheck_jyr_Jform(self):
self.assertTrue(crossCheckTest('j', 'jyr'))
self.assertTrue(crossCheckTest(SrcList, 'j', 'h', 'jyr', verbose=verbose))
def test_HJ_CrossCheck_jzr_Jform(self):
self.assertTrue(crossCheckTest('j', 'jzr'))
self.assertTrue(crossCheckTest(SrcList, 'j', 'h', 'jzr', verbose=verbose))
def test_HJ_CrossCheck_jxi_Jform(self):
self.assertTrue(crossCheckTest('j', 'jxi'))
self.assertTrue(crossCheckTest(SrcList, 'j', 'h', 'jxi', verbose=verbose))
def test_HJ_CrossCheck_jyi_Jform(self):
self.assertTrue(crossCheckTest('j', 'jyi'))
self.assertTrue(crossCheckTest(SrcList, 'j', 'h', 'jyi', verbose=verbose))
def test_HJ_CrossCheck_jzi_Jform(self):
self.assertTrue(crossCheckTest('j', 'jzi'))
self.assertTrue(crossCheckTest(SrcList, 'j', 'h', 'jzi', verbose=verbose))
def test_HJ_CrossCheck_hxr_Jform(self):
self.assertTrue(crossCheckTest('j', 'hxr'))
self.assertTrue(crossCheckTest(SrcList, 'j', 'h', 'hxr', verbose=verbose))
def test_HJ_CrossCheck_hyr_Jform(self):
self.assertTrue(crossCheckTest('j', 'hyr'))
self.assertTrue(crossCheckTest(SrcList, 'j', 'h', 'hyr', verbose=verbose))
def test_HJ_CrossCheck_hzr_Jform(self):
self.assertTrue(crossCheckTest('j', 'hzr'))
self.assertTrue(crossCheckTest(SrcList, 'j', 'h', 'hzr', verbose=verbose))
def test_HJ_CrossCheck_hxi_Jform(self):
self.assertTrue(crossCheckTest('j', 'hxi'))
self.assertTrue(crossCheckTest(SrcList, 'j', 'h', 'hxi', verbose=verbose))
def test_HJ_CrossCheck_hyi_Jform(self):
self.assertTrue(crossCheckTest('j', 'hyi'))
self.assertTrue(crossCheckTest(SrcList, 'j', 'h', 'hyi', verbose=verbose))
def test_HJ_CrossCheck_hzi_Jform(self):
self.assertTrue(crossCheckTest('j', 'hzi'))
self.assertTrue(crossCheckTest(SrcList, 'j', 'h', 'hzi', verbose=verbose))
if __name__ == '__main__':
unittest.main()
@@ -0,0 +1,125 @@
import unittest
from SimPEG import *
from SimPEG import EM
import sys
from scipy.constants import mu_0
from SimPEG.EM.Utils.testingUtils import getFDEMProblem, crossCheckTest
testEJ = True
testBH = True
TOLEJHB = 1 # averaging and more sensitive to boundary condition violations (ie. the impact of violating the boundary conditions in each case is different.)
#TODO: choose better testing parameters to lower this
SrcList = ['RawVec', 'MagDipole', 'MagDipole_Bfield', 'MagDipole', 'CircularLoop']
class FDEM_CrossCheck(unittest.TestCase):
if testEJ:
def test_EJ_CrossCheck_jxr_Jform(self):
self.assertTrue(crossCheckTest(SrcList, 'e', 'j', 'jxr', TOL=TOLEJHB))
def test_EJ_CrossCheck_jyr_Jform(self):
self.assertTrue(crossCheckTest(SrcList, 'e', 'j', 'jyr', TOL=TOLEJHB))
def test_EJ_CrossCheck_jzr_Jform(self):
self.assertTrue(crossCheckTest(SrcList, 'e', 'j', 'jzr', TOL=TOLEJHB))
def test_EJ_CrossCheck_jxi_Jform(self):
self.assertTrue(crossCheckTest(SrcList, 'e', 'j', 'jxi', TOL=TOLEJHB))
def test_EJ_CrossCheck_jyi_Jform(self):
self.assertTrue(crossCheckTest(SrcList, 'e', 'j', 'jyi', TOL=TOLEJHB))
def test_EJ_CrossCheck_jzi_Jform(self):
self.assertTrue(crossCheckTest(SrcList, 'e', 'j', 'jzi', TOL=TOLEJHB))
def test_EJ_CrossCheck_exr_Jform(self):
self.assertTrue(crossCheckTest(SrcList, 'e', 'j', 'exr', TOL=TOLEJHB))
def test_EJ_CrossCheck_eyr_Jform(self):
self.assertTrue(crossCheckTest(SrcList, 'e', 'j', 'eyr', TOL=TOLEJHB))
def test_EJ_CrossCheck_ezr_Jform(self):
self.assertTrue(crossCheckTest(SrcList, 'e', 'j', 'ezr', TOL=TOLEJHB))
def test_EJ_CrossCheck_exi_Jform(self):
self.assertTrue(crossCheckTest(SrcList, 'e', 'j', 'exi', TOL=TOLEJHB))
def test_EJ_CrossCheck_eyi_Jform(self):
self.assertTrue(crossCheckTest(SrcList, 'e', 'j', 'eyi', TOL=TOLEJHB))
def test_EJ_CrossCheck_ezi_Jform(self):
self.assertTrue(crossCheckTest(SrcList, 'e', 'j', 'ezi', TOL=TOLEJHB))
def test_EJ_CrossCheck_bxr_Jform(self):
self.assertTrue(crossCheckTest(SrcList, 'e', 'j', 'bxr', TOL=TOLEJHB))
def test_EJ_CrossCheck_byr_Jform(self):
self.assertTrue(crossCheckTest(SrcList, 'e', 'j', 'byr', TOL=TOLEJHB))
def test_EJ_CrossCheck_bzr_Jform(self):
self.assertTrue(crossCheckTest(SrcList, 'e', 'j', 'bzr', TOL=TOLEJHB))
def test_EJ_CrossCheck_bxi_Jform(self):
self.assertTrue(crossCheckTest(SrcList, 'e', 'j', 'bxi', TOL=TOLEJHB))
def test_EJ_CrossCheck_byi_Jform(self):
self.assertTrue(crossCheckTest(SrcList, 'e', 'j', 'byi', TOL=TOLEJHB))
def test_EJ_CrossCheck_bzi_Jform(self):
self.assertTrue(crossCheckTest(SrcList, 'e', 'j', 'bzi', TOL=TOLEJHB))
def test_EJ_CrossCheck_hxr_Jform(self):
self.assertTrue(crossCheckTest(SrcList, 'e', 'j', 'hxr', TOL=TOLEJHB))
def test_EJ_CrossCheck_hyr_Jform(self):
self.assertTrue(crossCheckTest(SrcList, 'e', 'j', 'hyr', TOL=TOLEJHB))
def test_EJ_CrossCheck_hzr_Jform(self):
self.assertTrue(crossCheckTest(SrcList, 'e', 'j', 'hzr', TOL=TOLEJHB))
def test_EJ_CrossCheck_hxi_Jform(self):
self.assertTrue(crossCheckTest(SrcList, 'e', 'j', 'hxi', TOL=TOLEJHB))
def test_EJ_CrossCheck_hyi_Jform(self):
self.assertTrue(crossCheckTest(SrcList, 'e', 'j', 'hyi', TOL=TOLEJHB))
def test_EJ_CrossCheck_hzi_Jform(self):
self.assertTrue(crossCheckTest(SrcList, 'e', 'j', 'hzi', TOL=TOLEJHB))
if testBH:
def test_HB_CrossCheck_jxr_Jform(self):
self.assertTrue(crossCheckTest(SrcList, 'h', 'b', 'jxr', TOL=TOLEJHB))
def test_HB_CrossCheck_jyr_Jform(self):
self.assertTrue(crossCheckTest(SrcList, 'h', 'b', 'jyr', TOL=TOLEJHB))
def test_HB_CrossCheck_jzr_Jform(self):
self.assertTrue(crossCheckTest(SrcList, 'h', 'b', 'jzr', TOL=TOLEJHB))
def test_HB_CrossCheck_jxi_Jform(self):
self.assertTrue(crossCheckTest(SrcList, 'h', 'b', 'jxi', TOL=TOLEJHB))
def test_HB_CrossCheck_jyi_Jform(self):
self.assertTrue(crossCheckTest(SrcList, 'h', 'b', 'jyi', TOL=TOLEJHB))
def test_HB_CrossCheck_jzi_Jform(self):
self.assertTrue(crossCheckTest(SrcList, 'h', 'b', 'jzi', TOL=TOLEJHB))
def test_HB_CrossCheck_exr_Jform(self):
self.assertTrue(crossCheckTest(SrcList, 'h', 'b', 'exr', TOL=TOLEJHB))
def test_HB_CrossCheck_eyr_Jform(self):
self.assertTrue(crossCheckTest(SrcList, 'h', 'b', 'eyr', TOL=TOLEJHB))
def test_HB_CrossCheck_ezr_Jform(self):
self.assertTrue(crossCheckTest(SrcList, 'h', 'b', 'ezr', TOL=TOLEJHB))
def test_HB_CrossCheck_exi_Jform(self):
self.assertTrue(crossCheckTest(SrcList, 'h', 'b', 'exi', TOL=TOLEJHB))
def test_HB_CrossCheck_eyi_Jform(self):
self.assertTrue(crossCheckTest(SrcList, 'h', 'b', 'eyi', TOL=TOLEJHB))
def test_HB_CrossCheck_ezi_Jform(self):
self.assertTrue(crossCheckTest(SrcList, 'h', 'b', 'ezi', TOL=TOLEJHB))
def test_HB_CrossCheck_bxr_Jform(self):
self.assertTrue(crossCheckTest(SrcList, 'h', 'b', 'bxr', TOL=TOLEJHB))
def test_HB_CrossCheck_byr_Jform(self):
self.assertTrue(crossCheckTest(SrcList, 'h', 'b', 'byr', TOL=TOLEJHB))
def test_HB_CrossCheck_bzr_Jform(self):
self.assertTrue(crossCheckTest(SrcList, 'h', 'b', 'bzr', TOL=TOLEJHB))
def test_HB_CrossCheck_bxi_Jform(self):
self.assertTrue(crossCheckTest(SrcList, 'h', 'b', 'bxi', TOL=TOLEJHB))
def test_HB_CrossCheck_byi_Jform(self):
self.assertTrue(crossCheckTest(SrcList, 'h', 'b', 'byi', TOL=TOLEJHB))
def test_HB_CrossCheck_bzi_Jform(self):
self.assertTrue(crossCheckTest(SrcList, 'h', 'b', 'bzi', TOL=TOLEJHB))
def test_HB_CrossCheck_hxr_Jform(self):
self.assertTrue(crossCheckTest(SrcList, 'h', 'b', 'hxr', TOL=TOLEJHB))
def test_HB_CrossCheck_hyr_Jform(self):
self.assertTrue(crossCheckTest(SrcList, 'h', 'b', 'hyr', TOL=TOLEJHB))
def test_HB_CrossCheck_hzr_Jform(self):
self.assertTrue(crossCheckTest(SrcList, 'h', 'b', 'hzr', TOL=TOLEJHB))
def test_HB_CrossCheck_hxi_Jform(self):
self.assertTrue(crossCheckTest(SrcList, 'h', 'b', 'hxi', TOL=TOLEJHB))
def test_HB_CrossCheck_hyi_Jform(self):
self.assertTrue(crossCheckTest(SrcList, 'h', 'b', 'hyi', TOL=TOLEJHB))
def test_HB_CrossCheck_hzi_Jform(self):
self.assertTrue(crossCheckTest(SrcList, 'h', 'b', 'hzi', TOL=TOLEJHB))
if __name__ == '__main__':
unittest.main()
@@ -0,0 +1,128 @@
import unittest
from SimPEG import *
from SimPEG import EM
import sys
from scipy.constants import mu_0
from SimPEG.EM.Utils.testingUtils import getFDEMProblem, crossCheckTest
testEB = True
testHJ = True
testEJ = True
testBH = True
verbose = False
TOLEJHB = 1 # averaging and more sensitive to boundary condition violations (ie. the impact of violating the boundary conditions in each case is different.)
#TODO: choose better testing parameters to lower this
SrcList = ['RawVec', 'MagDipole_Bfield', 'MagDipole', 'CircularLoop']
class FDEM_CrossCheck(unittest.TestCase):
if testBH:
def test_BH_CrossCheck_jxr(self):
self.assertTrue(crossCheckTest(SrcList, 'b', 'h', 'jxr', verbose=verbose, TOL=TOLEJHB))
def test_BH_CrossCheck_jyr(self):
self.assertTrue(crossCheckTest(SrcList, 'b', 'h', 'jyr', verbose=verbose, TOL=TOLEJHB))
def test_BH_CrossCheck_jzr(self):
self.assertTrue(crossCheckTest(SrcList, 'b', 'h', 'jzr', verbose=verbose, TOL=TOLEJHB))
def test_BH_CrossCheck_jxi(self):
self.assertTrue(crossCheckTest(SrcList, 'b', 'h', 'jxi', verbose=verbose, TOL=TOLEJHB))
def test_BH_CrossCheck_jyi(self):
self.assertTrue(crossCheckTest(SrcList, 'b', 'h', 'jyi', verbose=verbose, TOL=TOLEJHB))
def test_BH_CrossCheck_jzi(self):
self.assertTrue(crossCheckTest(SrcList, 'b', 'h', 'jzi', verbose=verbose, TOL=TOLEJHB))
def test_BH_CrossCheck_exr(self):
self.assertTrue(crossCheckTest(SrcList, 'b', 'h', 'exr', verbose=verbose, TOL=TOLEJHB))
def test_BH_CrossCheck_eyr(self):
self.assertTrue(crossCheckTest(SrcList, 'b', 'h', 'eyr', verbose=verbose, TOL=TOLEJHB))
def test_BH_CrossCheck_ezr(self):
self.assertTrue(crossCheckTest(SrcList, 'b', 'h', 'ezr', verbose=verbose, TOL=TOLEJHB))
def test_BH_CrossCheck_exi(self):
self.assertTrue(crossCheckTest(SrcList, 'b', 'h', 'exi', verbose=verbose, TOL=TOLEJHB))
def test_BH_CrossCheck_eyi(self):
self.assertTrue(crossCheckTest(SrcList, 'b', 'h', 'eyi', verbose=verbose, TOL=TOLEJHB))
def test_BH_CrossCheck_ezi(self):
self.assertTrue(crossCheckTest(SrcList, 'b', 'h', 'ezi', verbose=verbose, TOL=TOLEJHB))
def test_BH_CrossCheck_bxr(self):
self.assertTrue(crossCheckTest(SrcList, 'b', 'h', 'bxr', verbose=verbose, TOL=TOLEJHB))
def test_BH_CrossCheck_byr(self):
self.assertTrue(crossCheckTest(SrcList, 'b', 'h', 'byr', verbose=verbose, TOL=TOLEJHB))
def test_BH_CrossCheck_bzr(self):
self.assertTrue(crossCheckTest(SrcList, 'b', 'h', 'bzr', verbose=verbose, TOL=TOLEJHB))
def test_BH_CrossCheck_bxi(self):
self.assertTrue(crossCheckTest(SrcList, 'b', 'h', 'bxi', verbose=verbose, TOL=TOLEJHB))
def test_BH_CrossCheck_byi(self):
self.assertTrue(crossCheckTest(SrcList, 'b', 'h', 'byi', verbose=verbose, TOL=TOLEJHB))
def test_BH_CrossCheck_bzi(self):
self.assertTrue(crossCheckTest(SrcList, 'b', 'h', 'bzi', verbose=verbose, TOL=TOLEJHB))
def test_BH_CrossCheck_hxr(self):
self.assertTrue(crossCheckTest(SrcList, 'b', 'h', 'hxr', verbose=verbose, TOL=TOLEJHB))
def test_BH_CrossCheck_hyr(self):
self.assertTrue(crossCheckTest(SrcList, 'b', 'h', 'hyr', verbose=verbose, TOL=TOLEJHB))
def test_BH_CrossCheck_hzr(self):
self.assertTrue(crossCheckTest(SrcList, 'b', 'h', 'hzr', verbose=verbose, TOL=TOLEJHB))
def test_BH_CrossCheck_hxi(self):
self.assertTrue(crossCheckTest(SrcList, 'b', 'h', 'hxi', verbose=verbose, TOL=TOLEJHB))
def test_BH_CrossCheck_hyi(self):
self.assertTrue(crossCheckTest(SrcList, 'b', 'h', 'hyi', verbose=verbose, TOL=TOLEJHB))
def test_BH_CrossCheck_hzi(self):
self.assertTrue(crossCheckTest(SrcList, 'b', 'h', 'hzi', verbose=verbose, TOL=TOLEJHB))
if testBH:
def test_BH_CrossCheck_jxr(self):
self.assertTrue(crossCheckTest(SrcList, 'b', 'h', 'jxr', verbose=verbose, TOL=TOLEJHB))
def test_BH_CrossCheck_jyr(self):
self.assertTrue(crossCheckTest(SrcList, 'b', 'h', 'jyr', verbose=verbose, TOL=TOLEJHB))
def test_BH_CrossCheck_jzr(self):
self.assertTrue(crossCheckTest(SrcList, 'b', 'h', 'jzr', verbose=verbose, TOL=TOLEJHB))
def test_BH_CrossCheck_jxi(self):
self.assertTrue(crossCheckTest(SrcList, 'b', 'h', 'jxi', verbose=verbose, TOL=TOLEJHB))
def test_BH_CrossCheck_jyi(self):
self.assertTrue(crossCheckTest(SrcList, 'b', 'h', 'jyi', verbose=verbose, TOL=TOLEJHB))
def test_BH_CrossCheck_jzi(self):
self.assertTrue(crossCheckTest(SrcList, 'b', 'h', 'jzi', verbose=verbose, TOL=TOLEJHB))
def test_BH_CrossCheck_exr(self):
self.assertTrue(crossCheckTest(SrcList, 'b', 'h', 'exr', verbose=verbose, TOL=TOLEJHB))
def test_BH_CrossCheck_eyr(self):
self.assertTrue(crossCheckTest(SrcList, 'b', 'h', 'eyr', verbose=verbose, TOL=TOLEJHB))
def test_BH_CrossCheck_ezr(self):
self.assertTrue(crossCheckTest(SrcList, 'b', 'h', 'ezr', verbose=verbose, TOL=TOLEJHB))
def test_BH_CrossCheck_exi(self):
self.assertTrue(crossCheckTest(SrcList, 'b', 'h', 'exi', verbose=verbose, TOL=TOLEJHB))
def test_BH_CrossCheck_eyi(self):
self.assertTrue(crossCheckTest(SrcList, 'b', 'h', 'eyi', verbose=verbose, TOL=TOLEJHB))
def test_BH_CrossCheck_ezi(self):
self.assertTrue(crossCheckTest(SrcList, 'b', 'h', 'ezi', verbose=verbose, TOL=TOLEJHB))
def test_BH_CrossCheck_bxr(self):
self.assertTrue(crossCheckTest(SrcList, 'b', 'h', 'bxr', verbose=verbose, TOL=TOLEJHB))
def test_BH_CrossCheck_byr(self):
self.assertTrue(crossCheckTest(SrcList, 'b', 'h', 'byr', verbose=verbose, TOL=TOLEJHB))
def test_BH_CrossCheck_bzr(self):
self.assertTrue(crossCheckTest(SrcList, 'b', 'h', 'bzr', verbose=verbose, TOL=TOLEJHB))
def test_BH_CrossCheck_bxi(self):
self.assertTrue(crossCheckTest(SrcList, 'b', 'h', 'bxi', verbose=verbose, TOL=TOLEJHB))
def test_BH_CrossCheck_byi(self):
self.assertTrue(crossCheckTest(SrcList, 'b', 'h', 'byi', verbose=verbose, TOL=TOLEJHB))
def test_BH_CrossCheck_bzi(self):
self.assertTrue(crossCheckTest(SrcList, 'b', 'h', 'bzi', verbose=verbose, TOL=TOLEJHB))
def test_BH_CrossCheck_hxr(self):
self.assertTrue(crossCheckTest(SrcList, 'b', 'h', 'hxr', verbose=verbose, TOL=TOLEJHB))
def test_BH_CrossCheck_hyr(self):
self.assertTrue(crossCheckTest(SrcList, 'b', 'h', 'hyr', verbose=verbose, TOL=TOLEJHB))
def test_BH_CrossCheck_hzr(self):
self.assertTrue(crossCheckTest(SrcList, 'b', 'h', 'hzr', verbose=verbose, TOL=TOLEJHB))
def test_BH_CrossCheck_hxi(self):
self.assertTrue(crossCheckTest(SrcList, 'b', 'h', 'hxi', verbose=verbose, TOL=TOLEJHB))
def test_BH_CrossCheck_hyi(self):
self.assertTrue(crossCheckTest(SrcList, 'b', 'h', 'hyi', verbose=verbose, TOL=TOLEJHB))
def test_BH_CrossCheck_hzi(self):
self.assertTrue(crossCheckTest(SrcList, 'b', 'h', 'hzi', verbose=verbose, TOL=TOLEJHB))
if __name__ == '__main__':
unittest.main()
@@ -5,8 +5,8 @@ import sys
from scipy.constants import mu_0
from SimPEG.EM.Utils.testingUtils import getFDEMProblem
testEB = True
testHJ = True
testE = True
testB = True
verbose = False
@@ -17,10 +17,10 @@ MU = mu_0
freq = 1e-1
addrandoms = True
SrcType = 'RawVec' #or 'MAgDipole_Bfield', 'CircularLoop', 'RawVec'
SrcList = ['RawVec', 'MagDipole'] #or 'MAgDipole_Bfield', 'CircularLoop', 'RawVec'
def adjointTest(fdemType, comp):
prb = getFDEMProblem(fdemType, comp, [SrcType], freq)
prb = getFDEMProblem(fdemType, comp, SrcList, freq)
print 'Adjoint %s formulation - %s' % (fdemType, comp)
m = np.log(np.ones(prb.mapping.nP)*CONDUCTIVITY)
@@ -45,7 +45,7 @@ def adjointTest(fdemType, comp):
return np.abs(vJw - wJtv) < tol
class FDEM_AdjointTests(unittest.TestCase):
if testEB:
if testE:
def test_Jtvec_adjointTest_exr_Eform(self):
self.assertTrue(adjointTest('e', 'exr'))
def test_Jtvec_adjointTest_eyr_Eform(self):
@@ -72,6 +72,33 @@ class FDEM_AdjointTests(unittest.TestCase):
def test_Jtvec_adjointTest_bzi_Eform(self):
self.assertTrue(adjointTest('e', 'bzi'))
def test_Jtvec_adjointTest_jxr_Eform(self):
self.assertTrue(adjointTest('e', 'jxr'))
def test_Jtvec_adjointTest_jyr_Eform(self):
self.assertTrue(adjointTest('e', 'jyr'))
def test_Jtvec_adjointTest_jzr_Eform(self):
self.assertTrue(adjointTest('e', 'jzr'))
def test_Jtvec_adjointTest_jxi_Eform(self):
self.assertTrue(adjointTest('e', 'jxi'))
def test_Jtvec_adjointTest_jyi_Eform(self):
self.assertTrue(adjointTest('e', 'jyi'))
def test_Jtvec_adjointTest_jzi_Eform(self):
self.assertTrue(adjointTest('e', 'jzi'))
def test_Jtvec_adjointTest_hxr_Eform(self):
self.assertTrue(adjointTest('e', 'hxr'))
def test_Jtvec_adjointTest_hyr_Eform(self):
self.assertTrue(adjointTest('e', 'hyr'))
def test_Jtvec_adjointTest_hzr_Eform(self):
self.assertTrue(adjointTest('e', 'hzr'))
def test_Jtvec_adjointTest_hxi_Eform(self):
self.assertTrue(adjointTest('e', 'hxi'))
def test_Jtvec_adjointTest_hyi_Eform(self):
self.assertTrue(adjointTest('e', 'hyi'))
def test_Jtvec_adjointTest_hzi_Eform(self):
self.assertTrue(adjointTest('e', 'hzi'))
if testB:
def test_Jtvec_adjointTest_exr_Bform(self):
self.assertTrue(adjointTest('b', 'exr'))
def test_Jtvec_adjointTest_eyr_Bform(self):
@@ -84,6 +111,7 @@ class FDEM_AdjointTests(unittest.TestCase):
self.assertTrue(adjointTest('b', 'eyi'))
def test_Jtvec_adjointTest_ezi_Bform(self):
self.assertTrue(adjointTest('b', 'ezi'))
def test_Jtvec_adjointTest_bxr_Bform(self):
self.assertTrue(adjointTest('b', 'bxr'))
def test_Jtvec_adjointTest_byr_Bform(self):
@@ -97,59 +125,31 @@ class FDEM_AdjointTests(unittest.TestCase):
def test_Jtvec_adjointTest_bzi_Bform(self):
self.assertTrue(adjointTest('b', 'bzi'))
def test_Jtvec_adjointTest_jxr_Bform(self):
self.assertTrue(adjointTest('b', 'jxr'))
def test_Jtvec_adjointTest_jyr_Bform(self):
self.assertTrue(adjointTest('b', 'jyr'))
def test_Jtvec_adjointTest_jzr_Bform(self):
self.assertTrue(adjointTest('b', 'jzr'))
def test_Jtvec_adjointTest_jxi_Bform(self):
self.assertTrue(adjointTest('b', 'jxi'))
def test_Jtvec_adjointTest_jyi_Bform(self):
self.assertTrue(adjointTest('b', 'jyi'))
def test_Jtvec_adjointTest_jzi_Bform(self):
self.assertTrue(adjointTest('b', 'jzi'))
if testHJ:
def test_Jtvec_adjointTest_jxr_Jform(self):
self.assertTrue(adjointTest('j', 'jxr'))
def test_Jtvec_adjointTest_jyr_Jform(self):
self.assertTrue(adjointTest('j', 'jyr'))
def test_Jtvec_adjointTest_jzr_Jform(self):
self.assertTrue(adjointTest('j', 'jzr'))
def test_Jtvec_adjointTest_jxi_Jform(self):
self.assertTrue(adjointTest('j', 'jxi'))
def test_Jtvec_adjointTest_jyi_Jform(self):
self.assertTrue(adjointTest('j', 'jyi'))
def test_Jtvec_adjointTest_jzi_Jform(self):
self.assertTrue(adjointTest('j', 'jzi'))
def test_Jtvec_adjointTest_hxr_Jform(self):
self.assertTrue(adjointTest('j', 'hxr'))
def test_Jtvec_adjointTest_hyr_Jform(self):
self.assertTrue(adjointTest('j', 'hyr'))
def test_Jtvec_adjointTest_hzr_Jform(self):
self.assertTrue(adjointTest('j', 'hzr'))
def test_Jtvec_adjointTest_hxi_Jform(self):
self.assertTrue(adjointTest('j', 'hxi'))
def test_Jtvec_adjointTest_hyi_Jform(self):
self.assertTrue(adjointTest('j', 'hyi'))
def test_Jtvec_adjointTest_hzi_Jform(self):
self.assertTrue(adjointTest('j', 'hzi'))
def test_Jtvec_adjointTest_hxr_Hform(self):
self.assertTrue(adjointTest('h', 'hxr'))
def test_Jtvec_adjointTest_hyr_Hform(self):
self.assertTrue(adjointTest('h', 'hyr'))
def test_Jtvec_adjointTest_hzr_Hform(self):
self.assertTrue(adjointTest('h', 'hzr'))
def test_Jtvec_adjointTest_hxi_Hform(self):
self.assertTrue(adjointTest('h', 'hxi'))
def test_Jtvec_adjointTest_hyi_Hform(self):
self.assertTrue(adjointTest('h', 'hyi'))
def test_Jtvec_adjointTest_hzi_Hform(self):
self.assertTrue(adjointTest('h', 'hzi'))
def test_Jtvec_adjointTest_hxr_Hform(self):
self.assertTrue(adjointTest('h', 'jxr'))
def test_Jtvec_adjointTest_hyr_Hform(self):
self.assertTrue(adjointTest('h', 'jyr'))
def test_Jtvec_adjointTest_hzr_Hform(self):
self.assertTrue(adjointTest('h', 'jzr'))
def test_Jtvec_adjointTest_hxi_Hform(self):
self.assertTrue(adjointTest('h', 'jxi'))
def test_Jtvec_adjointTest_hyi_Hform(self):
self.assertTrue(adjointTest('h', 'jyi'))
def test_Jtvec_adjointTest_hzi_Hform(self):
self.assertTrue(adjointTest('h', 'jzi'))
def test_Jtvec_adjointTest_hxr_Bform(self):
self.assertTrue(adjointTest('b', 'hxr'))
def test_Jtvec_adjointTest_hyr_Bform(self):
self.assertTrue(adjointTest('b', 'hyr'))
def test_Jtvec_adjointTest_hzr_Bform(self):
self.assertTrue(adjointTest('b', 'hzr'))
def test_Jtvec_adjointTest_hxi_Bform(self):
self.assertTrue(adjointTest('b', 'hxi'))
def test_Jtvec_adjointTest_hyi_Bform(self):
self.assertTrue(adjointTest('b', 'hyi'))
def test_Jtvec_adjointTest_hzi_Bform(self):
self.assertTrue(adjointTest('b', 'hzi'))
if __name__ == '__main__':
@@ -0,0 +1,155 @@
import unittest
from SimPEG import *
from SimPEG import EM
import sys
from scipy.constants import mu_0
from SimPEG.EM.Utils.testingUtils import getFDEMProblem
testJ = True
testH = True
verbose = False
TOL = 1e-5
FLR = 1e-20 # "zero", so if residual below this --> pass regardless of order
CONDUCTIVITY = 1e1
MU = mu_0
freq = 1e-1
addrandoms = True
SrcList = ['RawVec', 'MagDipole'] #or 'MAgDipole_Bfield', 'CircularLoop', 'RawVec'
def adjointTest(fdemType, comp):
prb = getFDEMProblem(fdemType, comp, SrcList, freq)
print 'Adjoint %s formulation - %s' % (fdemType, comp)
m = np.log(np.ones(prb.mapping.nP)*CONDUCTIVITY)
mu = np.ones(prb.mesh.nC)*MU
if addrandoms is True:
m = m + np.random.randn(prb.mapping.nP)*np.log(CONDUCTIVITY)*1e-1
mu = mu + np.random.randn(prb.mesh.nC)*MU*1e-1
survey = prb.survey
u = prb.fields(m)
v = np.random.rand(survey.nD)
w = np.random.rand(prb.mesh.nC)
vJw = v.dot(prb.Jvec(m, w, u))
wJtv = w.dot(prb.Jtvec(m, v, u))
tol = np.max([TOL*(10**int(np.log10(np.abs(vJw)))),FLR])
print vJw, wJtv, vJw - wJtv, tol, np.abs(vJw - wJtv) < tol
return np.abs(vJw - wJtv) < tol
class FDEM_AdjointTests(unittest.TestCase):
if testJ:
def test_Jtvec_adjointTest_jxr_Jform(self):
self.assertTrue(adjointTest('j', 'jxr'))
def test_Jtvec_adjointTest_jyr_Jform(self):
self.assertTrue(adjointTest('j', 'jyr'))
def test_Jtvec_adjointTest_jzr_Jform(self):
self.assertTrue(adjointTest('j', 'jzr'))
def test_Jtvec_adjointTest_jxi_Jform(self):
self.assertTrue(adjointTest('j', 'jxi'))
def test_Jtvec_adjointTest_jyi_Jform(self):
self.assertTrue(adjointTest('j', 'jyi'))
def test_Jtvec_adjointTest_jzi_Jform(self):
self.assertTrue(adjointTest('j', 'jzi'))
def test_Jtvec_adjointTest_hxr_Jform(self):
self.assertTrue(adjointTest('j', 'hxr'))
def test_Jtvec_adjointTest_hyr_Jform(self):
self.assertTrue(adjointTest('j', 'hyr'))
def test_Jtvec_adjointTest_hzr_Jform(self):
self.assertTrue(adjointTest('j', 'hzr'))
def test_Jtvec_adjointTest_hxi_Jform(self):
self.assertTrue(adjointTest('j', 'hxi'))
def test_Jtvec_adjointTest_hyi_Jform(self):
self.assertTrue(adjointTest('j', 'hyi'))
def test_Jtvec_adjointTest_hzi_Jform(self):
self.assertTrue(adjointTest('j', 'hzi'))
def test_Jtvec_adjointTest_exr_Jform(self):
self.assertTrue(adjointTest('j', 'exr'))
def test_Jtvec_adjointTest_eyr_Jform(self):
self.assertTrue(adjointTest('j', 'eyr'))
def test_Jtvec_adjointTest_ezr_Jform(self):
self.assertTrue(adjointTest('j', 'ezr'))
def test_Jtvec_adjointTest_exi_Jform(self):
self.assertTrue(adjointTest('j', 'exi'))
def test_Jtvec_adjointTest_eyi_Jform(self):
self.assertTrue(adjointTest('j', 'eyi'))
def test_Jtvec_adjointTest_ezi_Jform(self):
self.assertTrue(adjointTest('j', 'ezi'))
def test_Jtvec_adjointTest_bxr_Jform(self):
self.assertTrue(adjointTest('j', 'bxr'))
def test_Jtvec_adjointTest_byr_Jform(self):
self.assertTrue(adjointTest('j', 'byr'))
def test_Jtvec_adjointTest_bzr_Jform(self):
self.assertTrue(adjointTest('j', 'bzr'))
def test_Jtvec_adjointTest_bxi_Jform(self):
self.assertTrue(adjointTest('j', 'bxi'))
def test_Jtvec_adjointTest_byi_Jform(self):
self.assertTrue(adjointTest('j', 'byi'))
def test_Jtvec_adjointTest_bzi_Jform(self):
self.assertTrue(adjointTest('j', 'bzi'))
if testH:
def test_Jtvec_adjointTest_hxr_Hform(self):
self.assertTrue(adjointTest('h', 'hxr'))
def test_Jtvec_adjointTest_hyr_Hform(self):
self.assertTrue(adjointTest('h', 'hyr'))
def test_Jtvec_adjointTest_hzr_Hform(self):
self.assertTrue(adjointTest('h', 'hzr'))
def test_Jtvec_adjointTest_hxi_Hform(self):
self.assertTrue(adjointTest('h', 'hxi'))
def test_Jtvec_adjointTest_hyi_Hform(self):
self.assertTrue(adjointTest('h', 'hyi'))
def test_Jtvec_adjointTest_hzi_Hform(self):
self.assertTrue(adjointTest('h', 'hzi'))
def test_Jtvec_adjointTest_jxr_Hform(self):
self.assertTrue(adjointTest('h', 'jxr'))
def test_Jtvec_adjointTest_jyr_Hform(self):
self.assertTrue(adjointTest('h', 'jyr'))
def test_Jtvec_adjointTest_jzr_Hform(self):
self.assertTrue(adjointTest('h', 'jzr'))
def test_Jtvec_adjointTest_jxi_Hform(self):
self.assertTrue(adjointTest('h', 'jxi'))
def test_Jtvec_adjointTest_jyi_Hform(self):
self.assertTrue(adjointTest('h', 'jyi'))
def test_Jtvec_adjointTest_jzi_Hform(self):
self.assertTrue(adjointTest('h', 'jzi'))
def test_Jtvec_adjointTest_exr_Hform(self):
self.assertTrue(adjointTest('h', 'exr'))
def test_Jtvec_adjointTest_eyr_Hform(self):
self.assertTrue(adjointTest('h', 'eyr'))
def test_Jtvec_adjointTest_ezr_Hform(self):
self.assertTrue(adjointTest('h', 'ezr'))
def test_Jtvec_adjointTest_exi_Hform(self):
self.assertTrue(adjointTest('h', 'exi'))
def test_Jtvec_adjointTest_eyi_Hform(self):
self.assertTrue(adjointTest('h', 'eyi'))
def test_Jtvec_adjointTest_ezi_Hform(self):
self.assertTrue(adjointTest('h', 'ezi'))
def test_Jtvec_adjointTest_bxr_Hform(self):
self.assertTrue(adjointTest('h', 'bxr'))
def test_Jtvec_adjointTest_byr_Hform(self):
self.assertTrue(adjointTest('h', 'byr'))
def test_Jtvec_adjointTest_bzr_Hform(self):
self.assertTrue(adjointTest('h', 'bzr'))
def test_Jtvec_adjointTest_bxi_Hform(self):
self.assertTrue(adjointTest('h', 'bxi'))
def test_Jtvec_adjointTest_byi_Hform(self):
self.assertTrue(adjointTest('h', 'byi'))
def test_Jtvec_adjointTest_bzi_Hform(self):
self.assertTrue(adjointTest('h', 'bzi'))
if __name__ == '__main__':
unittest.main()
+116 -10
View File
@@ -5,9 +5,11 @@ import sys
from scipy.constants import mu_0
from SimPEG.EM.Utils.testingUtils import getFDEMProblem
testDerivs = True
testEB = True
testHJ = True
testE = True
testB = True
testH = True
testJ = True
verbose = False
@@ -18,12 +20,12 @@ MU = mu_0
freq = 1e-1
addrandoms = True
SrcType = 'RawVec' #or 'MAgDipole_Bfield', 'CircularLoop', 'RawVec'
SrcType = ['MagDipole', 'RawVec'] #or 'MAgDipole_Bfield', 'CircularLoop', 'RawVec'
def derivTest(fdemType, comp):
prb = getFDEMProblem(fdemType, comp, [SrcType], freq)
prb = getFDEMProblem(fdemType, comp, SrcType, freq)
print '%s formulation - %s' % (fdemType, comp)
x0 = np.log(np.ones(prb.mapping.nP)*CONDUCTIVITY)
mu = np.log(np.ones(prb.mesh.nC)*MU)
@@ -32,9 +34,6 @@ def derivTest(fdemType, comp):
x0 = x0 + np.random.randn(prb.mapping.nP)*np.log(CONDUCTIVITY)*1e-1
mu = mu + np.random.randn(prb.mapping.nP)*MU*1e-1
# prb.PropMap.PropModel.mu = mu
# prb.PropMap.PropModel.mui = 1./mu
survey = prb.survey
def fun(x):
return survey.dpred(x), lambda x: prb.Jvec(x0, x)
@@ -43,7 +42,7 @@ def derivTest(fdemType, comp):
class FDEM_DerivTests(unittest.TestCase):
if testEB:
if testE:
def test_Jvec_exr_Eform(self):
self.assertTrue(derivTest('e', 'exr'))
def test_Jvec_eyr_Eform(self):
@@ -70,6 +69,33 @@ class FDEM_DerivTests(unittest.TestCase):
def test_Jvec_bzi_Eform(self):
self.assertTrue(derivTest('e', 'bzi'))
def test_Jvec_exr_Eform(self):
self.assertTrue(derivTest('e', 'jxr'))
def test_Jvec_eyr_Eform(self):
self.assertTrue(derivTest('e', 'jyr'))
def test_Jvec_ezr_Eform(self):
self.assertTrue(derivTest('e', 'jzr'))
def test_Jvec_exi_Eform(self):
self.assertTrue(derivTest('e', 'jxi'))
def test_Jvec_eyi_Eform(self):
self.assertTrue(derivTest('e', 'jyi'))
def test_Jvec_ezi_Eform(self):
self.assertTrue(derivTest('e', 'jzi'))
def test_Jvec_bxr_Eform(self):
self.assertTrue(derivTest('e', 'hxr'))
def test_Jvec_byr_Eform(self):
self.assertTrue(derivTest('e', 'hyr'))
def test_Jvec_bzr_Eform(self):
self.assertTrue(derivTest('e', 'hzr'))
def test_Jvec_bxi_Eform(self):
self.assertTrue(derivTest('e', 'hxi'))
def test_Jvec_byi_Eform(self):
self.assertTrue(derivTest('e', 'hyi'))
def test_Jvec_bzi_Eform(self):
self.assertTrue(derivTest('e', 'hzi'))
if testB:
def test_Jvec_exr_Bform(self):
self.assertTrue(derivTest('b', 'exr'))
def test_Jvec_eyr_Bform(self):
@@ -96,7 +122,33 @@ class FDEM_DerivTests(unittest.TestCase):
def test_Jvec_bzi_Bform(self):
self.assertTrue(derivTest('b', 'bzi'))
if testHJ:
def test_Jvec_jxr_Bform(self):
self.assertTrue(derivTest('b', 'jxr'))
def test_Jvec_jyr_Bform(self):
self.assertTrue(derivTest('b', 'jyr'))
def test_Jvec_jzr_Bform(self):
self.assertTrue(derivTest('b', 'jzr'))
def test_Jvec_jxi_Bform(self):
self.assertTrue(derivTest('b', 'jxi'))
def test_Jvec_jyi_Bform(self):
self.assertTrue(derivTest('b', 'jyi'))
def test_Jvec_jzi_Bform(self):
self.assertTrue(derivTest('b', 'jzi'))
def test_Jvec_hxr_Bform(self):
self.assertTrue(derivTest('b', 'hxr'))
def test_Jvec_hyr_Bform(self):
self.assertTrue(derivTest('b', 'hyr'))
def test_Jvec_hzr_Bform(self):
self.assertTrue(derivTest('b', 'hzr'))
def test_Jvec_hxi_Bform(self):
self.assertTrue(derivTest('b', 'hxi'))
def test_Jvec_hyi_Bform(self):
self.assertTrue(derivTest('b', 'hyi'))
def test_Jvec_hzi_Bform(self):
self.assertTrue(derivTest('b', 'hzi'))
if testJ:
def test_Jvec_jxr_Jform(self):
self.assertTrue(derivTest('j', 'jxr'))
def test_Jvec_jyr_Jform(self):
@@ -123,6 +175,34 @@ class FDEM_DerivTests(unittest.TestCase):
def test_Jvec_hzi_Jform(self):
self.assertTrue(derivTest('j', 'hzi'))
def test_Jvec_exr_Jform(self):
self.assertTrue(derivTest('j', 'exr'))
def test_Jvec_eyr_Jform(self):
self.assertTrue(derivTest('j', 'eyr'))
def test_Jvec_ezr_Jform(self):
self.assertTrue(derivTest('j', 'ezr'))
def test_Jvec_exi_Jform(self):
self.assertTrue(derivTest('j', 'exi'))
def test_Jvec_eyi_Jform(self):
self.assertTrue(derivTest('j', 'eyi'))
def test_Jvec_ezi_Jform(self):
self.assertTrue(derivTest('j', 'ezi'))
def test_Jvec_bxr_Jform(self):
self.assertTrue(derivTest('j', 'bxr'))
def test_Jvec_byr_Jform(self):
self.assertTrue(derivTest('j', 'byr'))
def test_Jvec_bzr_Jform(self):
self.assertTrue(derivTest('j', 'bzr'))
def test_Jvec_bxi_Jform(self):
self.assertTrue(derivTest('j', 'bxi'))
def test_Jvec_byi_Jform(self):
self.assertTrue(derivTest('j', 'byi'))
def test_Jvec_bzi_Jform(self):
self.assertTrue(derivTest('j', 'bzi'))
if testH:
def test_Jvec_hxr_Hform(self):
self.assertTrue(derivTest('h', 'hxr'))
def test_Jvec_hyr_Hform(self):
@@ -149,6 +229,32 @@ class FDEM_DerivTests(unittest.TestCase):
def test_Jvec_hzi_Hform(self):
self.assertTrue(derivTest('h', 'jzi'))
def test_Jvec_exr_Hform(self):
self.assertTrue(derivTest('h', 'exr'))
def test_Jvec_eyr_Hform(self):
self.assertTrue(derivTest('h', 'eyr'))
def test_Jvec_ezr_Hform(self):
self.assertTrue(derivTest('h', 'ezr'))
def test_Jvec_exi_Hform(self):
self.assertTrue(derivTest('h', 'exi'))
def test_Jvec_eyi_Hform(self):
self.assertTrue(derivTest('h', 'eyi'))
def test_Jvec_ezi_Hform(self):
self.assertTrue(derivTest('h', 'ezi'))
def test_Jvec_bxr_Hform(self):
self.assertTrue(derivTest('h', 'bxr'))
def test_Jvec_byr_Hform(self):
self.assertTrue(derivTest('h', 'byr'))
def test_Jvec_bzr_Hform(self):
self.assertTrue(derivTest('h', 'bzr'))
def test_Jvec_bxi_Hform(self):
self.assertTrue(derivTest('h', 'bxi'))
def test_Jvec_byi_Hform(self):
self.assertTrue(derivTest('h', 'byi'))
def test_Jvec_bzi_Hform(self):
self.assertTrue(derivTest('h', 'bzi'))
if __name__ == '__main__':
unittest.main()