archive

docs/api_PF.rst

@@ -151,6 +151,17 @@ Differential equation approach
 Inverse problem
 ===============
 
+.. image:: examples/model.png
+    :width: 800px
+    :align: center
+    :height: 350px
+    :alt: alternate text
+
+.. image:: examples/obspred.png
+    :width: 800px
+    :align: center
+    :height: 350px
+    :alt: alternate text    
 
 Mag Differential eq. approach
 *****************************

simpegPF/Ex_sir_Wathen.py

@@ -0,0 +1,82 @@
+from SimPEG import *
+import matplotlib.pyplot as plt
+from simpegPF.MagAnalytics import spheremodel, MagSphereAnalFun, CongruousMagBC
+import time
+
+# Step1: Generate 3D tensor mesh
+hxind = ((5,25,1.3),(41, 12.5),(5,25,1.3))
+hyind = ((5,25,1.3),(41, 12.5),(5,25,1.3))
+hzind = ((5,25,1.3),(40, 12.5),(5,25,1.3))
+hx, hy, hz = Utils.meshTensors(hxind, hyind, hzind)
+M3 = Mesh.TensorMesh([hx, hy, hz], [-sum(hx)/2,-sum(hy)/2,-sum(hz)/2])
+
+# Step2: Generate susceptibility model
+mu0 = 4*np.pi*1e-7
+chibkg = 0.
+chiblk = 1.
+chi = np.ones(M3.nC)*chibkg
+
+sph_ind = spheremodel(M3, 0., 0., 0., 50)
+chi[sph_ind] = chiblk
+mu = (1.+chi)*mu0
+# Step3: Generate Boundary
+BC = [['neumann', 'neumann'], ['neumann', 'neumann'], ['neumann', 'neumann']]
+Box = 1 # Primary field in x-direction (background)
+Boy = 0 # Primary field in y-direction (background)
+Boz = 0 # Primary field in z-direction (background)
+B0 = np.r_[Box*np.ones(np.prod(M3.nFx)), Boy*np.ones(np.prod(M3.nFy)), Boz*np.ones(np.prod(M3.nFz))]
+
+Bbc, Bbcderiv = CongruousMagBC(M3, np.array([Box, Boy, Boz]), chi)
+
+# Step4: Compute system matrix and right hand side
+Dface = M3.faceDiv
+Pbc, Pin, Pout = M3.getBCProjWF(BC, discretization='CC')
+Mc = Utils.sdiag(M3.vol)
+Div = Mc*Dface*Pin.T*Pin
+MfmuI = Utils.sdiag(1/M3.getFaceInnerProduct(1/mu).diagonal())
+Mfmu0 = 1/mu0*M3.getFaceInnerProduct()
+A = -Div*MfmuI*Div.T
+rhs = -Div*MfmuI*Mfmu0*B0 + Div*B0 - Mc*Dface*Pout.T*Bbc
+
+# Step5: Solve !!
+start = time.clock()
+m1 = sp.linalg.interface.aslinearoperator(Utils.sdiag(-1/A.diagonal()))
+phi, info = sp.linalg.bicgstab(A, rhs, tol=1e-6, maxiter = 1000, M =m1)
+elapsed = (time.clock() - start)
+
+print np.linalg.norm(A*phi-rhs)/np.linalg.norm(rhs)
+print ('Cpu time = %10.3e ms') % (elapsed*1000)
+# Step6: Update for B and project to receiver locations
+B = MfmuI*Mfmu0*B0-B0-MfmuI*Div.T*phi
+
+xr = np.linspace(-300, 300, 41)
+yr = np.linspace(-300, 300, 41)
+X, Y = np.meshgrid(xr, yr)
+Z = np.ones((np.size(xr), np.size(yr)))*80
+
+rxLoc = np.c_[Utils.mkvc(X), Utils.mkvc(Y), Utils.mkvc(Z)]
+Qfx = M3.getInterpolationMat(rxLoc,'Fx')
+Qfy = M3.getInterpolationMat(rxLoc,'Fy')
+Qfz = M3.getInterpolationMat(rxLoc,'Fz')
+
+Bxr = np.reshape(Qfx*B, (np.size(xr), np.size(yr)), order='F')
+Byr = np.reshape(Qfy*B, (np.size(xr), np.size(yr)), order='F')
+Bzr = np.reshape(Qfz*B, (np.size(xr), np.size(yr)), order='F')
+H0 = Box/mu0
+
+flag = 'secondary'
+
+Bxra, Byra, Bzra = MagSphereAnalFun(X, Y, Z, 50., 0., 0., 0., mu0, mu0*(1+chiblk), H0, flag)
+Bxra = np.reshape(Bxra, (np.size(xr), np.size(yr)), order='F')
+Byra = np.reshape(Byra, (np.size(xr), np.size(yr)), order='F')
+Bzra = np.reshape(Bzra, (np.size(xr), np.size(yr)), order='F')
+
+# Step6: comparison to analytics
+fig, ax = plt.subplots(3,2, figsize = (10,15))
+dat1 = ax[0,0].imshow(Bxr); fig.colorbar(dat1, ax=ax[0,0])
+dat2 = ax[0,1].imshow(Bxra); fig.colorbar(dat2, ax=ax[0,1])
+dat3 = ax[1,0].imshow(Byr); fig.colorbar(dat3, ax=ax[1,0])
+dat4 = ax[1,1].imshow(Byra); fig.colorbar(dat4, ax=ax[1,1])
+dat5 = ax[2,0].imshow(Bzr); fig.colorbar(dat5, ax=ax[2,0])
+dat6 = ax[2,1].imshow(Bzra); fig.colorbar(dat6, ax=ax[2,1])
+plt.show()

simpegPF/Magnetics.py

@@ -55,7 +55,7 @@ class MagneticsDiffSecondary(Problem.BaseProblem):
         .. math ::
 
             \mathbf{rhs} =  \Div(\MfMui)^{-1}\mathbf{M}^f_{\mu_0^{-1}}\mathbf{B}_0 - \Div\mathbf{B}_0+\diag(v)\mathbf{D} \mathbf{P}_{out}^T \mathbf{B}_{sBC}
-
+            
         """
         B0 = self.getB0()
         Dface = self.mesh.faceDiv

simpegPF/notebooks/MagInversion.ipynb

@@ -1,7 +1,7 @@
 {
  "metadata": {
   "name": "",
-  "signature": "sha256:c0435d56d573db123d3d215787258fc96159c6d73d284724f152b2d5bc4ac8f8"
+  "signature": "sha256:ccf93ffb36da34d96e9db949237c42f71adba319f5933dde309737a004e04064"
  },
  "nbformat": 3,
  "nbformat_minor": 0,
@@ -2809,7 +2809,7 @@
       "vmax = chi.max()\n",
       "ps1 = mesh.plotSlice(chi, vType='CC', ind=indx, normal='X',ax = axes[0], grid=True, gridOpts={'color':'b','lw':0.3, 'alpha':0.5});\n",
       "axes[0].set_title('$\\chi_{true}$', fontsize = 16)\n",
-      "axes[0].set_ylim(-300, 0.)\n",
+      "axes[0].set_ylim(-500, 0.)\n",
       "cb1 = colorbar(ps1[0], ax =  axes[0], orientation=\"horizontal\", ticks=[np.linspace(vmin, vmax, 5)], format = FormatStrFormatter('$%5.3f$'))\n",
       "axes[0].set_xlabel('Easting (m)')\n",
       "axes[0].set_ylabel('Depth (m)')\n",
@@ -2818,35 +2818,27 @@
       "vmax = (actMap*xc[iteration]).max()\n",
       "ps2 = mesh.plotSlice(actMap*xc[iteration], vType='CC', ind=indx, normal='X', ax = axes[1], grid=True, gridOpts={'color':'b','lw':0.3, 'alpha':0.5});\n",
       "axes[1].set_title('$\\chi_{pred}$', fontsize = 16)\n",
-      "axes[1].set_ylim(-300, 0.)\n",
+      "axes[1].set_ylim(-500, 0.)\n",
       "cb2 = colorbar(ps2[0], ax =  axes[1], orientation=\"horizontal\", ticks=[np.linspace(vmin, vmax, 5)], format = FormatStrFormatter('$%5.3f$'))\n",
-      "cb1.set_label('Total magnetic intensity (nT)')\n",
-      "cb2.set_label('Total magnetic intensity (nT)')\n",
+      "cb1.set_label('Susceptibility (dimensionless)')\n",
+      "cb2.set_label('Susceptibility (dimensionless)')\n",
       "axes[1].set_xlabel('Easting (m)')\n",
       "axes[1].set_ylabel('Depth (m)')\n",
-      "\n"
+      "fig.savefig('model.png', dpi = 200)"
      ],
      "language": "python",
      "metadata": {},
      "outputs": [
-      {
-       "metadata": {},
-       "output_type": "pyout",
-       "prompt_number": 501,
-       "text": [
-        "<matplotlib.text.Text at 0x16a97a50>"
-       ]
-      },
       {
        "metadata": {},
        "output_type": "display_data",
-       "png": 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truncated
+       "png": 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truncated
        "text": [
-        "<matplotlib.figure.Figure at 0x12447410>"
+        "<matplotlib.figure.Figure at 0x13fa23d0>"
        ]
       }
      ],
-     "prompt_number": 501
+     "prompt_number": 513
     },
     {
      "cell_type": "code",
@@ -2869,7 +2861,8 @@
       "ax[1].set_xlabel('Easting (m)')\n",
       "ax[1].set_ylabel('Northing (m)')\n",
       "cb1.set_label('Total magnetic intensity (nT)')\n",
-      "cb2.set_label('Total magnetic intensity (nT)')\n"
+      "cb2.set_label('Total magnetic intensity (nT)')\n",
+      "fig.savefig('obspred.png', dpi = 200)"
      ],
      "language": "python",
      "metadata": {},
@@ -2879,11 +2872,11 @@
        "output_type": "display_data",
        "png": 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truncated
        "text": [
-        "<matplotlib.figure.Figure at 0xea1ba50>"
+        "<matplotlib.figure.Figure at 0x133c4190>"
        ]
       }
      ],
-     "prompt_number": 497
+     "prompt_number": 514
     },
     {
      "cell_type": "code",