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+2
-1
@@ -9,6 +9,7 @@ model_weights/
|
||||
app/models/
|
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pip-wheel-metadata/
|
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test_tube_exp/
|
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tests/tests_tt_dir/
|
||||
|
||||
# Byte-compiled / optimized / DLL files
|
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__pycache__/
|
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@@ -119,4 +120,4 @@ ENV/
|
||||
.mypy_cache/
|
||||
|
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# data
|
||||
mnist/
|
||||
mnist/
|
||||
|
||||
@@ -0,0 +1,19 @@
|
||||
# .readthedocs.yml
|
||||
# Read the Docs configuration file
|
||||
# See https://docs.readthedocs.io/en/stable/config-file/v2.html for details
|
||||
|
||||
# Required
|
||||
version: 2
|
||||
|
||||
# Build documentation with MkDocs
|
||||
mkdocs:
|
||||
configuration: mkdocs.yml
|
||||
|
||||
# Optionally build your docs in additional formats such as PDF and ePub
|
||||
formats: all
|
||||
|
||||
# Optionally set the version of Python and requirements required to build your docs
|
||||
python:
|
||||
version: 3.7
|
||||
install:
|
||||
- requirements: docs/doc_requirements.txt
|
||||
+16
@@ -0,0 +1,16 @@
|
||||
language: python
|
||||
python:
|
||||
- "3.7"
|
||||
# command to install dependencies
|
||||
cache: pip
|
||||
install:
|
||||
- pip install -e .
|
||||
- pip install -r requirements.txt
|
||||
- pip install -U numpy
|
||||
|
||||
# keep build from timing out
|
||||
dist: xenial
|
||||
|
||||
# command to run tests
|
||||
script:
|
||||
- py.test # or py.test for Python versions 3.5 and below
|
||||
@@ -9,31 +9,103 @@
|
||||
<p align="center">
|
||||
The Keras for ML researchers using PyTorch. More control. Less boilerplate.
|
||||
</p>
|
||||
|
||||
<p align="center">
|
||||
<a href="https://badge.fury.io/py/pytorch-lightning"><img src="https://badge.fury.io/py/pytorch-lightning.svg" alt="PyPI version" height="18"></a>
|
||||
<!-- <a href="https://travis-ci.org/williamFalcon/test-tube"><img src="https://travis-ci.org/williamFalcon/pytorch-lightning.svg?branch=master"></a> -->
|
||||
<a href="https://pepy.tech/project/pytorch-lightning"><img src="https://pepy.tech/badge/pytorch-lightning" alt="PyPI version" height="18"></a>
|
||||
<a href="https://github.com/williamFalcon/pytorch-lightning/tree/master/tests"><img src="https://github.com/williamFalcon/pytorch-lightning/blob/master/coverage.svg"></a>
|
||||
<a href="https://travis-ci.org/williamFalcon/pytorch-lightning"><img src="https://travis-ci.org/williamFalcon/pytorch-lightning.svg?branch=master"></a>
|
||||
<a href="https://williamfalcon.github.io/pytorch-lightning/"><img src="https://readthedocs.org/projects/pytorch-lightning/badge/?version=latest"></a>
|
||||
<a href="https://github.com/williamFalcon/pytorch-lightning/blob/master/COPYING"><img src="https://img.shields.io/badge/License-MIT-yellow.svg"></a>
|
||||
</p>
|
||||
|
||||
```bash
|
||||
pip install pytorch-lightning
|
||||
pip install pytorch-lightning
|
||||
```
|
||||
|
||||
## Docs
|
||||
**[View the docs here](https://williamfalcon.github.io/pytorch-lightning/)**
|
||||
|
||||
## What is it?
|
||||
Keras and fast.ai are too abstract for researchers. Lightning abstracts the full training loop but gives you control in the critical points.
|
||||
Lightning defers training and validation loop logic to you. It guarantees correct, modern best practices for the core training logic.
|
||||
|
||||
|
||||
## Why do I want to use lightning?
|
||||
Because you don't want to define a training loop, validation loop, gradient clipping, checkpointing, loading,
|
||||
gpu training, etc... every time you start a project. Let lightning handle all of that for you! Just define your
|
||||
data and what happens in the training, testing and validation loop and lightning will do the rest.
|
||||
When starting a new project the last thing you want to do is recode a training loop, model loading/saving, distributed training, when to validate, etc... You're likely to spend a long time ironing out all the bugs without even getting to the core of your research.
|
||||
|
||||
With lightning, you guarantee those parts of your code work so you can focus on what the meat of the research: Data and training, validation loop logic. Don't worry about multiple gpus or speeding up your code, lightning will do that for you!
|
||||
|
||||
## How do I do use it?
|
||||
|
||||
To use lightning do 2 things:
|
||||
1. [Define a Trainer](https://github.com/williamFalcon/pytorch-lightning/blob/master/examples/new_project_templates/trainer_cpu_template.py).
|
||||
2. [Define a LightningModel](https://github.com/williamFalcon/pytorch-lightning/blob/master/examples/new_project_templates/lightning_module_template.py).
|
||||
1. [Define a LightningModel](https://williamfalcon.github.io/pytorch-lightning/LightningModule/RequiredTrainerInterface/)
|
||||
```python
|
||||
import pytorch_lightning as ptl
|
||||
import torch
|
||||
from torch.nn import functional as F
|
||||
from torch.utils.data import DataLoader
|
||||
from torchvision.datasets import MNIST
|
||||
|
||||
class CoolModel(ptl.LightningModule):
|
||||
|
||||
def __init(self):
|
||||
super(CoolModel, self).__init__()
|
||||
# not the best model...
|
||||
self.l1 = torch.nn.Linear(28 * 28, 10)
|
||||
|
||||
def forward(self, x):
|
||||
return torch.relu(self.l1(x))
|
||||
|
||||
def my_loss(self, y_hat, y):
|
||||
return F.cross_entropy(y_hat, y)
|
||||
|
||||
def training_step(self, batch, batch_nb):
|
||||
x, y = batch
|
||||
y_hat = self.forward(x)
|
||||
return {'tng_loss': self.my_loss(y_hat, y)}
|
||||
|
||||
def validation_step(self, batch, batch_nb):
|
||||
x, y = batch
|
||||
y_hat = self.forward(x)
|
||||
return {'val_loss': self.my_loss(y_hat, y)}
|
||||
|
||||
def validation_end(self, outputs):
|
||||
avg_loss = torch.stack([x for x in outputs['val_loss']]).mean()
|
||||
return avg_loss
|
||||
|
||||
def configure_optimizers(self):
|
||||
return [torch.optim.Adam(self.parameters(), lr=0.02)]
|
||||
|
||||
@ptl.data_loader
|
||||
def tng_dataloader(self):
|
||||
return DataLoader(MNIST('path/to/save', train=True), batch_size=32)
|
||||
|
||||
@ptl.data_loader
|
||||
def val_dataloader(self):
|
||||
return DataLoader(MNIST('path/to/save', train=False), batch_size=32)
|
||||
|
||||
@ptl.data_loader
|
||||
def test_dataloader(self):
|
||||
return DataLoader(MNIST('path/to/save', train=False), batch_size=32)
|
||||
```
|
||||
|
||||
2. Fit with a [trainer](https://williamfalcon.github.io/pytorch-lightning/Trainer/)
|
||||
```python
|
||||
from pytorch_lightning import Trainer
|
||||
from test_tube import Experiment
|
||||
|
||||
model = CoolModel()
|
||||
|
||||
# fit on 32 gpus across 4 nodes
|
||||
exp = Experiment(save_dir='some/dir')
|
||||
trainer = Trainer(experiment=exp, nb_gpu_nodes=4, gpus=[0,1,2,3,4,5,6,7])
|
||||
|
||||
trainer.fit(model)
|
||||
|
||||
# see all experiment metrics here
|
||||
# tensorboard --log_dir some/dir
|
||||
```
|
||||
|
||||
|
||||
## What does lightning control for me?
|
||||
Everything!
|
||||
@@ -148,7 +220,7 @@ And run tensorboard from that dir
|
||||
tensorboard --logdir /some/path
|
||||
```
|
||||
|
||||
## Lightning automatically automates all of the following ([each is also configurable](https://williamfalcon.github.io/pytorch-lightning/Trainer/)):
|
||||
## Lightning automates all of the following ([each is also configurable](https://williamfalcon.github.io/pytorch-lightning/Trainer/)):
|
||||
|
||||
###### Checkpointing
|
||||
|
||||
@@ -215,19 +287,22 @@ pip install pytorch-lightning
|
||||
|
||||
# clone lightning for the demo
|
||||
git clone https://github.com/williamFalcon/pytorch-lightning.git
|
||||
cd examples/new_project_templates/
|
||||
cd pytorch_lightning/examples/new_project_templates/
|
||||
|
||||
# run demo (on cpu)
|
||||
python trainer_gpu_cluster_template.py
|
||||
# all of the following demos use the SAME model to show no modification needs to be made to your code
|
||||
|
||||
# train on cpu
|
||||
python single_cpu_template.py
|
||||
|
||||
# train on multiple-gpus
|
||||
python single_gpu_node_template.py --gpus "0,1"
|
||||
|
||||
# train on 32 gpus on a cluster (run on a SLURM managed cluster)
|
||||
python multi_node_cluster_template.py --nb_gpu_nodes 4 --gpus '0,1,2,3,4,5,6,7'
|
||||
```
|
||||
|
||||
Without changing the model AT ALL, you can run the model on a single gpu, over multiple gpus, or over multiple nodes.
|
||||
## Bleeding edge
|
||||
If you can't wait for the next release, install the most up to date code with:
|
||||
```bash
|
||||
# run a grid search on two gpus
|
||||
python fully_featured_trainer.py --gpus "0;1"
|
||||
|
||||
# run single model on multiple gpus
|
||||
python fully_featured_trainer.py --gpus "0;1" --interactive
|
||||
```
|
||||
|
||||
|
||||
pip install git+https://github.com/williamFalcon/pytorch-lightning.git@master --upgrade
|
||||
```
|
||||
@@ -0,0 +1,21 @@
|
||||
<?xml version="1.0" encoding="UTF-8"?>
|
||||
<svg xmlns="http://www.w3.org/2000/svg" width="99" height="20">
|
||||
<linearGradient id="b" x2="0" y2="100%">
|
||||
<stop offset="0" stop-color="#bbb" stop-opacity=".1"/>
|
||||
<stop offset="1" stop-opacity=".1"/>
|
||||
</linearGradient>
|
||||
<mask id="a">
|
||||
<rect width="99" height="20" rx="3" fill="#fff"/>
|
||||
</mask>
|
||||
<g mask="url(#a)">
|
||||
<path fill="#555" d="M0 0h63v20H0z"/>
|
||||
<path fill="#4c1" d="M63 0h36v20H63z"/>
|
||||
<path fill="url(#b)" d="M0 0h99v20H0z"/>
|
||||
</g>
|
||||
<g fill="#fff" text-anchor="middle" font-family="DejaVu Sans,Verdana,Geneva,sans-serif" font-size="11">
|
||||
<text x="31.5" y="15" fill="#010101" fill-opacity=".3">coverage</text>
|
||||
<text x="31.5" y="14">coverage</text>
|
||||
<text x="80" y="15" fill="#010101" fill-opacity=".3">99%</text>
|
||||
<text x="80" y="14">99%</text>
|
||||
</g>
|
||||
</svg>
|
||||
|
After Width: | Height: | Size: 901 B |
@@ -3,7 +3,7 @@
|
||||
|
||||
A lightning module is a strict superclass of nn.Module, it provides a standard interface for the trainer to interact with the model.
|
||||
|
||||
The easiest thing to do is copy [this template](../../examples/new_project_templates/lightning_module_template.py) and modify accordingly.
|
||||
The easiest thing to do is copy [this template](../../pytorch_lightning/examples/new_project_templates/lightning_module_template.py) and modify accordingly.
|
||||
|
||||
Otherwise, to Define a Lightning Module, implement the following methods:
|
||||
|
||||
@@ -26,6 +26,58 @@ Otherwise, to Define a Lightning Module, implement the following methods:
|
||||
- [update_tng_log_metrics](RequiredTrainerInterface.md#update_tng_log_metrics)
|
||||
- [add_model_specific_args](RequiredTrainerInterface.md#add_model_specific_args)
|
||||
|
||||
---
|
||||
**Minimal example**
|
||||
```python
|
||||
import pytorch_lightning as ptl
|
||||
import torch
|
||||
from torch.nn import functional as F
|
||||
from torch.utils.data import DataLoader
|
||||
from torchvision.datasets import MNIST
|
||||
|
||||
class CoolModel(ptl.LightningModule):
|
||||
|
||||
def __init(self):
|
||||
super(CoolModel, self).__init__()
|
||||
# not the best model...
|
||||
self.l1 = torch.nn.Linear(28 * 28, 10)
|
||||
|
||||
def forward(self, x):
|
||||
return torch.relu(self.l1(x))
|
||||
|
||||
def my_loss(self, y_hat, y):
|
||||
return F.cross_entropy(y_hat, y)
|
||||
|
||||
def training_step(self, batch, batch_nb):
|
||||
x, y = batch
|
||||
y_hat = self.forward(x)
|
||||
return {'tng_loss': self.my_loss(y_hat, y)}
|
||||
|
||||
def validation_step(self, batch, batch_nb):
|
||||
x, y = batch
|
||||
y_hat = self.forward(x)
|
||||
return {'val_loss': self.my_loss(y_hat, y)}
|
||||
|
||||
def validation_end(self, outputs):
|
||||
avg_loss = torch.stack([x for x in outputs['val_loss']]).mean()
|
||||
return avg_loss
|
||||
|
||||
def configure_optimizers(self):
|
||||
return [torch.optim.Adam(self.parameters(), lr=0.02)]
|
||||
|
||||
@ptl.data_loader
|
||||
def tng_dataloader(self):
|
||||
return DataLoader(MNIST('path/to/save', train=True), batch_size=32)
|
||||
|
||||
@ptl.data_loader
|
||||
def val_dataloader(self):
|
||||
return DataLoader(MNIST('path/to/save', train=False), batch_size=32)
|
||||
|
||||
@ptl.data_loader
|
||||
def test_dataloader(self):
|
||||
return DataLoader(MNIST('path/to/save', train=False), batch_size=32)
|
||||
```
|
||||
|
||||
---
|
||||
|
||||
### training_step
|
||||
@@ -237,10 +289,10 @@ def load_model_specific(self, checkpoint):
|
||||
### tng_dataloader
|
||||
|
||||
``` {.python}
|
||||
@property
|
||||
@ptl.data_loader
|
||||
def tng_dataloader(self)
|
||||
```
|
||||
Called by lightning during training loop. Define it as a property.
|
||||
Called by lightning during training loop. Make sure to use the @ptl.data_loader decorator, this ensures not calling this function until the data are needed.
|
||||
|
||||
##### Return
|
||||
Pytorch DataLoader
|
||||
@@ -248,32 +300,26 @@ Pytorch DataLoader
|
||||
**Example**
|
||||
|
||||
``` {.python}
|
||||
@property
|
||||
@ptl.data_loader
|
||||
def tng_dataloader(self):
|
||||
if self._tng_dataloader is None:
|
||||
try:
|
||||
transform = transforms.Compose([transforms.ToTensor(), transforms.Normalize((0.5,), (1.0,))])
|
||||
dataset = MNIST(root='/path/to/mnist/', train=True, transform=transform, download=True)
|
||||
loader = torch.utils.data.DataLoader(
|
||||
dataset=dataset,
|
||||
batch_size=self.hparams.batch_size,
|
||||
shuffle=True
|
||||
)
|
||||
self._tng_dataloader = loader
|
||||
except Exception as e:
|
||||
raise e
|
||||
|
||||
return self._tng_dataloader
|
||||
transform = transforms.Compose([transforms.ToTensor(), transforms.Normalize((0.5,), (1.0,))])
|
||||
dataset = MNIST(root='/path/to/mnist/', train=True, transform=transform, download=True)
|
||||
loader = torch.utils.data.DataLoader(
|
||||
dataset=dataset,
|
||||
batch_size=self.hparams.batch_size,
|
||||
shuffle=True
|
||||
)
|
||||
return loader
|
||||
```
|
||||
|
||||
---
|
||||
### val_dataloader
|
||||
|
||||
``` {.python}
|
||||
@property
|
||||
@ptl.data_loader
|
||||
def tng_dataloader(self)
|
||||
```
|
||||
Called by lightning during validation loop. Define it as a property.
|
||||
Called by lightning during validation loop. Make sure to use the @ptl.data_loader decorator, this ensures not calling this function until the data are needed.
|
||||
|
||||
##### Return
|
||||
Pytorch DataLoader
|
||||
@@ -281,32 +327,27 @@ Pytorch DataLoader
|
||||
**Example**
|
||||
|
||||
``` {.python}
|
||||
@property
|
||||
@ptl.data_loader
|
||||
def val_dataloader(self):
|
||||
if self._val_dataloader is None:
|
||||
try:
|
||||
transform = transforms.Compose([transforms.ToTensor(), transforms.Normalize((0.5,), (1.0,))])
|
||||
dataset = MNIST(root='/path/to/mnist/', train=False, transform=transform, download=True)
|
||||
loader = torch.utils.data.DataLoader(
|
||||
dataset=dataset,
|
||||
batch_size=self.hparams.batch_size,
|
||||
shuffle=True
|
||||
)
|
||||
self._val_dataloader = loader
|
||||
except Exception as e:
|
||||
raise e
|
||||
|
||||
return self._val_dataloader
|
||||
transform = transforms.Compose([transforms.ToTensor(), transforms.Normalize((0.5,), (1.0,))])
|
||||
dataset = MNIST(root='/path/to/mnist/', train=False, transform=transform, download=True)
|
||||
loader = torch.utils.data.DataLoader(
|
||||
dataset=dataset,
|
||||
batch_size=self.hparams.batch_size,
|
||||
shuffle=True
|
||||
)
|
||||
|
||||
return loader
|
||||
```
|
||||
|
||||
---
|
||||
### test_dataloader
|
||||
|
||||
``` {.python}
|
||||
@property
|
||||
@ptl.data_loader
|
||||
def test_dataloader(self)
|
||||
```
|
||||
Called by lightning during test loop. Define it as a property.
|
||||
Called by lightning during test loop. Make sure to use the @ptl.data_loader decorator, this ensures not calling this function until the data are needed.
|
||||
|
||||
##### Return
|
||||
Pytorch DataLoader
|
||||
@@ -314,22 +355,17 @@ Pytorch DataLoader
|
||||
**Example**
|
||||
|
||||
``` {.python}
|
||||
@property
|
||||
@ptl.data_loader
|
||||
def test_dataloader(self):
|
||||
if self._test_dataloader is None:
|
||||
try:
|
||||
transform = transforms.Compose([transforms.ToTensor(), transforms.Normalize((0.5,), (1.0,))])
|
||||
dataset = MNIST(root='/path/to/mnist/', train=False, transform=transform, download=True)
|
||||
loader = torch.utils.data.DataLoader(
|
||||
dataset=dataset,
|
||||
batch_size=self.hparams.batch_size,
|
||||
shuffle=True
|
||||
)
|
||||
self._test_dataloader = loader
|
||||
except Exception as e:
|
||||
raise e
|
||||
|
||||
return self._test_dataloader
|
||||
transform = transforms.Compose([transforms.ToTensor(), transforms.Normalize((0.5,), (1.0,))])
|
||||
dataset = MNIST(root='/path/to/mnist/', train=False, transform=transform, download=True)
|
||||
loader = torch.utils.data.DataLoader(
|
||||
dataset=dataset,
|
||||
batch_size=self.hparams.batch_size,
|
||||
shuffle=True
|
||||
)
|
||||
|
||||
return loader
|
||||
```
|
||||
|
||||
---
|
||||
|
||||
@@ -3,6 +3,26 @@ Lightning makes multi-gpu training and 16 bit training trivial.
|
||||
*Note:*
|
||||
None of the flags below require changing anything about your lightningModel definition.
|
||||
|
||||
---
|
||||
#### Choosing a backend
|
||||
Lightning supports two backends. DataParallel and DistributedDataParallel. Both can be used for single-node multi-GPU training.
|
||||
For multi-node training you must use DistributedDataParallel.
|
||||
|
||||
You can toggle between each mode by setting this flag.
|
||||
``` {.python}
|
||||
# DEFAULT uses DataParallel
|
||||
trainer = Trainer(distributed_backend='dp')
|
||||
|
||||
# change to distributed data parallel
|
||||
trainer = Trainer(distributed_backend='ddp')
|
||||
```
|
||||
|
||||
If you request multiple nodes, the back-end will auto-switch to ddp.
|
||||
We recommend you use DistributedDataparallel even for single-node multi-GPU training. It is MUCH faster than DP but *may*
|
||||
have configuration issues depending on your cluster.
|
||||
|
||||
For a deeper understanding of what lightning is doing, feel free to read [this guide](https://medium.com/@_willfalcon/9-tips-for-training-lightning-fast-neural-networks-in-pytorch-8e63a502f565).
|
||||
|
||||
---
|
||||
#### 16-bit mixed precision
|
||||
16 bit precision can cut your memory footprint by half. If using volta architecture GPUs it can give a dramatic training speed-up as well.
|
||||
@@ -37,16 +57,69 @@ Make sure you're on a GPU machine. You can set as many GPUs as you want.
|
||||
In this setting, the model will run on all 8 GPUs at once using DataParallel under the hood.
|
||||
```python
|
||||
# set these flags
|
||||
os.environ["CUDA_DEVICE_ORDER"] = "PCI_BUS_ID"
|
||||
os.environ["CUDA_VISIBLE_DEVICES"] = "0,1,2,3,4,5,6,7"
|
||||
# lightning sets these flags for you automatically
|
||||
# no need to set yourself
|
||||
# os.environ["CUDA_DEVICE_ORDER"] = "PCI_BUS_ID"
|
||||
# os.environ["CUDA_VISIBLE_DEVICES"] = "0,1,2,3,4,5,6,7"
|
||||
|
||||
# DEFAULT
|
||||
trainer = Trainer(gpus=[0,1,2,3,4,5,6,7])
|
||||
|
||||
# to use DataParallel (default)
|
||||
trainer = Trainer(gpus=[0,1,2,3,4,5,6,7], distributed_backend='dp')
|
||||
|
||||
# RECOMMENDED use DistributedDataParallel
|
||||
trainer = Trainer(gpus=[0,1,2,3,4,5,6,7], distributed_backend='ddp')
|
||||
```
|
||||
|
||||
---
|
||||
#### Multi-node
|
||||
COMING SOON.
|
||||
Multi-node training is easily done by specifying these flags.
|
||||
```python
|
||||
# train on 12*8 GPUs
|
||||
trainer = Trainer(gpus=[0,1,2,3,4,5,6,7], nb_gpu_nodes=12)
|
||||
```
|
||||
|
||||
In addition, make sure to set up your SLURM job correctly via the [SlurmClusterObject](https://williamfalcon.github.io/test-tube/hpc/SlurmCluster/). In particular, specify the number of tasks per node correctly.
|
||||
|
||||
```python
|
||||
cluster = SlurmCluster(
|
||||
hyperparam_optimizer=test_tube.HyperOptArgumentParser(),
|
||||
log_path='/some/path/to/save',
|
||||
)
|
||||
|
||||
# OPTIONAL FLAGS WHICH MAY BE CLUSTER DEPENDENT
|
||||
# which interface your nodes use for communication
|
||||
cluster.add_command('export NCCL_SOCKET_IFNAME=^docker0,lo')
|
||||
|
||||
# see output of the NCCL connection process
|
||||
# NCCL is how the nodes talk to each other
|
||||
cluster.add_command('export NCCL_DEBUG=INFO')
|
||||
|
||||
# setting a master port here is a good idea.
|
||||
cluster.add_command(f'export MASTER_PORT={PORT}')
|
||||
|
||||
# good to load the latest NCCL version
|
||||
cluster.load_modules(['NCCL/2.4.7-1-cuda.10.0'])
|
||||
|
||||
# configure cluster
|
||||
cluster.per_experiment_nb_nodes = 12
|
||||
cluster.per_experiment_nb_gpus = 8
|
||||
|
||||
cluster.add_slurm_cmd(cmd='ntasks-per-node', value=8, comment='1 task per gpu')
|
||||
```
|
||||
|
||||
Finally, make sure to add a distributed sampler to your dataset. The distributed sampler copies a
|
||||
portion of your dataset onto each GPU. (World_size = gpus_per_node * nb_nodes).
|
||||
|
||||
```python
|
||||
# ie: this:
|
||||
dataset = myDataset()
|
||||
dataloader = Dataloader(dataset)
|
||||
|
||||
# becomes:
|
||||
dataset = myDataset()
|
||||
dist_sampler = torch.utils.data.distributed.DistributedSampler(dataset)
|
||||
dataloader = Dataloader(dataset, sampler=dist_sampler)
|
||||
```
|
||||
|
||||
---
|
||||
#### Self-balancing architecture
|
||||
|
||||
@@ -0,0 +1 @@
|
||||
mkdocs-material==4.4.0
|
||||
+5
-4
@@ -1,10 +1,11 @@
|
||||
###### New project Quick Start
|
||||
To start a new project define these two files.
|
||||
|
||||
1. [Define a LightningModule](/LightningModule/RequiredTrainerInterface/#template-model-definition)
|
||||
2. Pick a trainer
|
||||
- [Basic CPU Trainer](https://github.com/williamFalcon/pytorch-lightning/blob/master/examples/new_project_templates/trainer_cpu_template.py)
|
||||
- [GPU cluster Trainer](https://github.com/williamFalcon/pytorch-lightning/blob/master/examples/new_project_templates/trainer_gpu_cluster_template.py)
|
||||
1. [Define a LightningModule](/pytorch-lightning/LightningModule/RequiredTrainerInterface/)
|
||||
2. [Define a trainer](https://williamfalcon.github.io/pytorch-lightning/Trainer/)
|
||||
- [Basic CPU Trainer Template](https://github.com/williamFalcon/pytorch-lightning/blob/master/pytorch_lightning/examples/new_project_templates/single_cpu_template.py)
|
||||
- [Multi-GPU Trainer Template](https://github.com/williamFalcon/pytorch-lightning/blob/master/pytorch_lightning/examples/new_project_templates/single_gpu_node_template.py)
|
||||
- [GPU cluster Trainer Template](https://github.com/williamFalcon/pytorch-lightning/blob/master/pytorch_lightning/examples/new_project_templates/multi_node_cluster_template.py)
|
||||
|
||||
###### Docs shortcuts
|
||||
- [LightningModule](LightningModule/RequiredTrainerInterface/)
|
||||
|
||||
@@ -1 +0,0 @@
|
||||
from .lightning_module_template import LightningTemplateModel
|
||||
@@ -1,2 +1,3 @@
|
||||
from .models import Trainer
|
||||
from .root_module.root_module import LightningModule
|
||||
from .root_module.root_module import LightningModule
|
||||
from .root_module.decorators import data_loader
|
||||
@@ -0,0 +1 @@
|
||||
from .new_project_templates.lightning_module_template import LightningTemplateModel
|
||||
+31
-41
@@ -10,6 +10,7 @@ from torch import optim
|
||||
from torch.utils.data import DataLoader
|
||||
from torch.utils.data.distributed import DistributedSampler
|
||||
|
||||
import pytorch_lightning as ptl
|
||||
from pytorch_lightning.root_module.root_module import LightningModule
|
||||
|
||||
|
||||
@@ -24,10 +25,14 @@ class LightningTemplateModel(LightningModule):
|
||||
:param hparams:
|
||||
"""
|
||||
# init superclass
|
||||
super(LightningTemplateModel, self).__init__(hparams)
|
||||
super(LightningTemplateModel, self).__init__()
|
||||
self.hparams = hparams
|
||||
|
||||
self.batch_size = hparams.batch_size
|
||||
|
||||
# if you specify an example input, the summary will show input/output for each layer
|
||||
self.example_input_array = torch.rand(5, 28 * 28)
|
||||
|
||||
# build model
|
||||
self.__build_model()
|
||||
|
||||
@@ -78,11 +83,16 @@ class LightningTemplateModel(LightningModule):
|
||||
# forward pass
|
||||
x, y = data_batch
|
||||
x = x.view(x.size(0), -1)
|
||||
|
||||
y_hat = self.forward(x)
|
||||
|
||||
# calculate loss
|
||||
loss_val = self.loss(y, y_hat)
|
||||
|
||||
# in DP mode (default) make sure if result is scalar, there's another dim in the beginning
|
||||
if self.trainer.use_dp:
|
||||
loss_val = loss_val.unsqueeze(0)
|
||||
|
||||
output = OrderedDict({
|
||||
'loss': loss_val
|
||||
})
|
||||
@@ -105,10 +115,19 @@ class LightningTemplateModel(LightningModule):
|
||||
# acc
|
||||
labels_hat = torch.argmax(y_hat, dim=1)
|
||||
val_acc = torch.sum(y == labels_hat).item() / (len(y) * 1.0)
|
||||
val_acc = torch.tensor(val_acc)
|
||||
|
||||
if self.on_gpu:
|
||||
val_acc = val_acc.cuda(loss_val.device.index)
|
||||
|
||||
# in DP mode (default) make sure if result is scalar, there's another dim in the beginning
|
||||
if self.trainer.use_dp:
|
||||
loss_val = loss_val.unsqueeze(0)
|
||||
val_acc = val_acc.unsqueeze(0)
|
||||
|
||||
output = OrderedDict({
|
||||
'val_loss': loss_val,
|
||||
'val_acc': torch.tensor(val_acc).cuda(loss_val.device.index),
|
||||
'val_acc': val_acc,
|
||||
})
|
||||
|
||||
# can also return just a scalar instead of a dict (return loss_val)
|
||||
@@ -135,20 +154,6 @@ class LightningTemplateModel(LightningModule):
|
||||
tqdm_dic = {'val_loss': val_loss_mean.item(), 'val_acc': val_acc_mean.item()}
|
||||
return tqdm_dic
|
||||
|
||||
def update_tng_log_metrics(self, logs):
|
||||
return logs
|
||||
|
||||
# ---------------------
|
||||
# MODEL SAVING
|
||||
# ---------------------
|
||||
def get_save_dict(self):
|
||||
checkpoint = {'state_dict': self.state_dict()}
|
||||
return checkpoint
|
||||
|
||||
def load_model_specific(self, checkpoint):
|
||||
self.load_state_dict(checkpoint['state_dict'])
|
||||
pass
|
||||
|
||||
# ---------------------
|
||||
# TRAINING SETUP
|
||||
# ---------------------
|
||||
@@ -186,38 +191,23 @@ class LightningTemplateModel(LightningModule):
|
||||
|
||||
return loader
|
||||
|
||||
@property
|
||||
@ptl.data_loader
|
||||
def tng_dataloader(self):
|
||||
if self._tng_dataloader is None:
|
||||
try:
|
||||
self._tng_dataloader = self.__dataloader(train=True)
|
||||
except Exception as e:
|
||||
print(e)
|
||||
raise e
|
||||
return self._tng_dataloader
|
||||
print('tng data loader called')
|
||||
return self.__dataloader(train=True)
|
||||
|
||||
@property
|
||||
@ptl.data_loader
|
||||
def val_dataloader(self):
|
||||
if self._val_dataloader is None:
|
||||
try:
|
||||
self._val_dataloader = self.__dataloader(train=False)
|
||||
except Exception as e:
|
||||
print(e)
|
||||
raise e
|
||||
return self._val_dataloader
|
||||
print('val data loader called')
|
||||
return self.__dataloader(train=False)
|
||||
|
||||
@property
|
||||
@ptl.data_loader
|
||||
def test_dataloader(self):
|
||||
if self._test_dataloader is None:
|
||||
try:
|
||||
self._test_dataloader = self.__dataloader(train=False)
|
||||
except Exception as e:
|
||||
print(e)
|
||||
raise e
|
||||
return self._test_dataloader
|
||||
print('test data loader called')
|
||||
return self.__dataloader(train=False)
|
||||
|
||||
@staticmethod
|
||||
def add_model_specific_args(parent_parser, root_dir):
|
||||
def add_model_specific_args(parent_parser, root_dir): # pragma: no cover
|
||||
"""
|
||||
Parameters you define here will be available to your model through self.hparams
|
||||
:param parent_parser:
|
||||
@@ -1,203 +0,0 @@
|
||||
import torch.nn as nn
|
||||
import numpy as np
|
||||
from pytorch_lightning.root_module.root_module import LightningModule
|
||||
from test_tube import HyperOptArgumentParser
|
||||
from torchvision.datasets import MNIST
|
||||
import torchvision.transforms as transforms
|
||||
import torch
|
||||
import torch.nn.functional as F
|
||||
|
||||
|
||||
class ExampleModel1(LightningModule):
|
||||
"""
|
||||
Sample model to show how to define a template
|
||||
"""
|
||||
|
||||
def __init__(self, hparams):
|
||||
# init superclass
|
||||
super(ExampleModel1, self).__init__(hparams)
|
||||
|
||||
self.batch_size = hparams.batch_size
|
||||
|
||||
# build model
|
||||
self.__build_model()
|
||||
|
||||
# ---------------------
|
||||
# MODEL SETUP
|
||||
# ---------------------
|
||||
def __build_model(self):
|
||||
"""
|
||||
Layout model
|
||||
:return:
|
||||
"""
|
||||
self.c_d1 = nn.Linear(in_features=self.hparams.in_features, out_features=self.hparams.hidden_dim)
|
||||
self.c_d1_bn = nn.BatchNorm1d(self.hparams.hidden_dim)
|
||||
self.c_d1_drop = nn.Dropout(self.hparams.drop_prob)
|
||||
|
||||
self.c_d2 = nn.Linear(in_features=self.hparams.hidden_dim, out_features=self.hparams.out_features)
|
||||
|
||||
# ---------------------
|
||||
# TRAINING
|
||||
# ---------------------
|
||||
def forward(self, x):
|
||||
x = self.c_d1(x)
|
||||
x = F.tanh(x)
|
||||
x = self.c_d1_bn(x)
|
||||
x = self.c_d1_drop(x)
|
||||
|
||||
x = self.c_d2(x)
|
||||
logits = F.log_softmax(x, dim=1)
|
||||
|
||||
return logits
|
||||
|
||||
def loss(self, labels, logits):
|
||||
nll = F.nll_loss(logits, labels)
|
||||
return nll
|
||||
|
||||
def training_step(self, data_batch):
|
||||
"""
|
||||
Called inside the training loop
|
||||
:param data_batch:
|
||||
:return:
|
||||
"""
|
||||
# forward pass
|
||||
x, y = data_batch
|
||||
x = x.view(x.size(0), -1)
|
||||
y_hat = self.forward(x)
|
||||
|
||||
# calculate loss
|
||||
loss_val = self.loss(y, y_hat)
|
||||
|
||||
tqdm_dic = {'jefe': 1}
|
||||
return loss_val, tqdm_dic
|
||||
|
||||
def validation_step(self, data_batch):
|
||||
"""
|
||||
Called inside the validation loop
|
||||
:param data_batch:
|
||||
:return:
|
||||
"""
|
||||
x, y = data_batch
|
||||
x = x.view(x.size(0), -1)
|
||||
y_hat = self.forward(x)
|
||||
|
||||
loss_val = self.loss(y, y_hat)
|
||||
|
||||
# acc
|
||||
labels_hat = torch.argmax(y_hat, dim=1)
|
||||
val_acc = torch.sum(y == labels_hat).item() / (len(y) * 1.0)
|
||||
|
||||
output = {'y_hat': y_hat, 'val_loss': loss_val.item(), 'val_acc': val_acc}
|
||||
return output
|
||||
|
||||
def validation_end(self, outputs):
|
||||
"""
|
||||
Called at the end of validation to aggregate outputs
|
||||
:param outputs: list of individual outputs of each validation step
|
||||
:return:
|
||||
"""
|
||||
val_loss_mean = 0
|
||||
accs = []
|
||||
for output in outputs:
|
||||
val_loss_mean += output['val_loss']
|
||||
accs.append(output['val_acc'])
|
||||
|
||||
val_loss_mean /= len(outputs)
|
||||
tqdm_dic = {'val_loss': val_loss_mean, 'val_acc': np.mean(accs)}
|
||||
return tqdm_dic
|
||||
|
||||
def update_tng_log_metrics(self, logs):
|
||||
return logs
|
||||
|
||||
# ---------------------
|
||||
# MODEL SAVING
|
||||
# ---------------------
|
||||
def get_save_dict(self):
|
||||
checkpoint = {
|
||||
'state_dict': self.state_dict(),
|
||||
}
|
||||
|
||||
return checkpoint
|
||||
|
||||
def load_model_specific(self, checkpoint):
|
||||
self.load_state_dict(checkpoint['state_dict'])
|
||||
pass
|
||||
|
||||
# ---------------------
|
||||
# TRAINING SETUP
|
||||
# ---------------------
|
||||
def configure_optimizers(self):
|
||||
"""
|
||||
return whatever optimizers we want here
|
||||
:return: list of optimizers
|
||||
"""
|
||||
optimizer = self.choose_optimizer(self.hparams.optimizer_name, self.parameters(), {'lr': self.hparams.learning_rate}, 'optimizer')
|
||||
self.optimizers = [optimizer]
|
||||
return self.optimizers
|
||||
|
||||
def __dataloader(self, train):
|
||||
# init data generators
|
||||
transform = transforms.Compose([transforms.ToTensor(), transforms.Normalize((0.5,), (1.0,))])
|
||||
|
||||
dataset = MNIST(root=self.hparams.data_root, train=train, transform=transform, download=True)
|
||||
|
||||
loader = torch.utils.data.DataLoader(
|
||||
dataset=dataset,
|
||||
batch_size=self.hparams.batch_size,
|
||||
shuffle=True
|
||||
)
|
||||
|
||||
return loader
|
||||
|
||||
@property
|
||||
def tng_dataloader(self):
|
||||
if self._tng_dataloader is None:
|
||||
try:
|
||||
self._tng_dataloader = self.__dataloader(train=True)
|
||||
except Exception as e:
|
||||
print(e)
|
||||
raise e
|
||||
return self._tng_dataloader
|
||||
|
||||
@property
|
||||
def val_dataloader(self):
|
||||
if self._val_dataloader is None:
|
||||
try:
|
||||
self._val_dataloader = self.__dataloader(train=False)
|
||||
except Exception as e:
|
||||
print(e)
|
||||
raise e
|
||||
return self._val_dataloader
|
||||
|
||||
@property
|
||||
def test_dataloader(self):
|
||||
if self._test_dataloader is None:
|
||||
try:
|
||||
self._test_dataloader = self.__dataloader(train=False)
|
||||
except Exception as e:
|
||||
print(e)
|
||||
raise e
|
||||
return self._test_dataloader
|
||||
|
||||
@staticmethod
|
||||
def add_model_specific_args(parent_parser):
|
||||
parser = HyperOptArgumentParser(strategy=parent_parser.strategy, parents=[parent_parser])
|
||||
|
||||
# param overwrites
|
||||
# parser.set_defaults(gradient_clip=5.0)
|
||||
|
||||
# network params
|
||||
parser.opt_list('--drop_prob', default=0.2, options=[0.2, 0.5], type=float, tunable=False)
|
||||
parser.add_argument('--in_features', default=28*28)
|
||||
parser.add_argument('--hidden_dim', default=500)
|
||||
parser.add_argument('--out_features', default=10)
|
||||
|
||||
# data
|
||||
parser.add_argument('--data_root', default='/Users/williamfalcon/Developer/personal/research_lib/research_proj/datasets/mnist', type=str)
|
||||
|
||||
# training params (opt)
|
||||
parser.opt_list('--learning_rate', default=0.001, type=float, options=[0.0001, 0.0005, 0.001, 0.005],
|
||||
tunable=False)
|
||||
parser.opt_list('--batch_size', default=256, type=int, options=[32, 64, 128, 256], tunable=False)
|
||||
parser.opt_list('--optimizer_name', default='adam', type=str, options=['adam'], tunable=False)
|
||||
return parser
|
||||
@@ -1,12 +1,12 @@
|
||||
"""
|
||||
The trainer handles all the logic for running a val loop, training loop, distributing, etc...
|
||||
"""
|
||||
from time import sleep
|
||||
import subprocess
|
||||
import traceback
|
||||
import warnings
|
||||
import os
|
||||
import pdb
|
||||
import re
|
||||
|
||||
import torch
|
||||
from torch.utils.data.distributed import DistributedSampler
|
||||
@@ -19,12 +19,12 @@ import tqdm
|
||||
from pytorch_lightning.root_module.memory import get_gpu_memory_map
|
||||
from pytorch_lightning.root_module.model_saving import TrainerIO
|
||||
from pytorch_lightning.pt_overrides.override_data_parallel import LightningDistributedDataParallel, LightningDataParallel
|
||||
|
||||
from pytorch_lightning.utils.debugging import MisconfigurationException
|
||||
|
||||
try:
|
||||
from apex import amp
|
||||
APEX_AVAILABLE = True
|
||||
except ModuleNotFoundError:
|
||||
except ModuleNotFoundError: # pragma: no cover
|
||||
APEX_AVAILABLE = False
|
||||
|
||||
|
||||
@@ -114,6 +114,7 @@ class Trainer(TrainerIO):
|
||||
"""
|
||||
|
||||
# Transfer params
|
||||
|
||||
self.nb_gpu_nodes = nb_gpu_nodes
|
||||
self.gradient_clip = gradient_clip
|
||||
self.check_val_every_n_epoch = check_val_every_n_epoch
|
||||
@@ -146,17 +147,33 @@ class Trainer(TrainerIO):
|
||||
self.print_nan_grads = print_nan_grads
|
||||
self.data_parallel_device_ids = None
|
||||
self.world_size = 1
|
||||
self.node_rank = 0
|
||||
self.use_ddp = False
|
||||
self.use_dp = False
|
||||
|
||||
# training bookeeping
|
||||
self.total_batch_nb = 0
|
||||
self.running_loss = []
|
||||
self.avg_loss = 0
|
||||
self.batch_nb = 0
|
||||
self.tqdm_metrics = {}
|
||||
self.nb_val_batches = None
|
||||
self.nb_tng_batches = None
|
||||
self.nb_test_batches = None
|
||||
|
||||
# gpus come in as a string.
|
||||
# if gpus = -1 then use all available devices
|
||||
# otherwise, split the string using commas
|
||||
if gpus is not None:
|
||||
if gpus == '-1':
|
||||
self.data_parallel_device_ids = list(range(0, torch.cuda.device_count()))
|
||||
if type(gpus) is list:
|
||||
self.data_parallel_device_ids = gpus
|
||||
elif type(gpus) is str:
|
||||
if gpus == '-1':
|
||||
self.data_parallel_device_ids = list(range(0, torch.cuda.device_count()))
|
||||
else:
|
||||
self.data_parallel_device_ids = [int(x.strip()) for x in gpus.split(',')]
|
||||
else:
|
||||
self.data_parallel_device_ids = [int(x.strip()) for x in gpus.split(',')]
|
||||
raise Exception('gpus has to be a string or list of ids')
|
||||
|
||||
# set the correct cuda visible devices (using pci order)
|
||||
os.environ["CUDA_DEVICE_ORDER"] = "PCI_BUS_ID"
|
||||
@@ -170,6 +187,28 @@ class Trainer(TrainerIO):
|
||||
self.use_dp = distributed_backend == 'dp'
|
||||
self.use_ddp = distributed_backend == 'ddp'
|
||||
|
||||
# use ddp automatically if nb_gpu_nodes > 1
|
||||
if nb_gpu_nodes > 1 and self.use_dp: # pragma: no cover
|
||||
self.use_ddp = True
|
||||
self.use_dp = False
|
||||
w = 'DataParallel does not support nb_gpu_nodes > 1. ' \
|
||||
'Switching to DistributedDataParallel for you. ' \
|
||||
'To silence this warning set distributed_backend=ddp'
|
||||
warnings.warn(w)
|
||||
|
||||
# extract SLURM flag vars
|
||||
# whenever we have the correct number of tasks, we let slurm manage processes
|
||||
# otherwise we launch the required number of processes
|
||||
if self.use_ddp:
|
||||
self.nb_requested_gpus = len(self.data_parallel_device_ids) * self.nb_gpu_nodes
|
||||
self.nb_slurm_tasks = 0
|
||||
try:
|
||||
self.nb_slurm_tasks = int(os.environ['SLURM_NTASKS'])
|
||||
self.is_slurm_managing_tasks = self.nb_slurm_tasks == self.nb_requested_gpus
|
||||
except Exception as e:
|
||||
# likely not on slurm, so set the slurm managed flag to false
|
||||
self.is_slurm_managing_tasks = False
|
||||
|
||||
# process info
|
||||
self.proc_rank = 0
|
||||
|
||||
@@ -199,7 +238,7 @@ class Trainer(TrainerIO):
|
||||
if self.use_amp:
|
||||
print('using 16bit precision')
|
||||
|
||||
if use_amp and not APEX_AVAILABLE:
|
||||
if use_amp and not APEX_AVAILABLE: # pragma: no cover
|
||||
msg = '''
|
||||
You set use_amp=True but do not have apex installed.
|
||||
Install apex first using this guide and rerun with use_amp=True:
|
||||
@@ -207,7 +246,7 @@ class Trainer(TrainerIO):
|
||||
|
||||
this run will NOT use 16 bit precision
|
||||
'''
|
||||
warnings.warn(msg)
|
||||
raise ModuleNotFoundError(msg)
|
||||
|
||||
@property
|
||||
def data_parallel(self):
|
||||
@@ -235,6 +274,7 @@ class Trainer(TrainerIO):
|
||||
|
||||
@property
|
||||
def __tng_tqdm_dic(self):
|
||||
# ForkedPdb().set_trace()
|
||||
tqdm_dic = {
|
||||
'tng_loss': '{0:.3f}'.format(self.avg_loss),
|
||||
'v_nb': '{}'.format(self.experiment.version),
|
||||
@@ -248,13 +288,15 @@ class Trainer(TrainerIO):
|
||||
|
||||
return tqdm_dic
|
||||
|
||||
@property
|
||||
def tng_tqdm_dic(self):
|
||||
"""
|
||||
Read-only for tqdm metrics
|
||||
:return:
|
||||
"""
|
||||
return self.__tng_tqdm_dic
|
||||
|
||||
def __layout_bookeeping(self):
|
||||
# training bookeeping
|
||||
self.total_batch_nb = 0
|
||||
self.running_loss = []
|
||||
self.avg_loss = 0
|
||||
self.batch_nb = 0
|
||||
self.tqdm_metrics = {}
|
||||
|
||||
# determine number of training batches
|
||||
self.nb_tng_batches = len(self.tng_dataloader)
|
||||
@@ -301,7 +343,7 @@ class Trainer(TrainerIO):
|
||||
# run training
|
||||
for batch_i, data_batch in enumerate(dataloader):
|
||||
|
||||
if data_batch is None:
|
||||
if data_batch is None: # pragma: no cover
|
||||
continue
|
||||
|
||||
# stop short when on fast dev run
|
||||
@@ -340,7 +382,7 @@ class Trainer(TrainerIO):
|
||||
|
||||
return val_results
|
||||
|
||||
def __get_dataloaders(self, model):
|
||||
def get_dataloaders(self, model):
|
||||
"""
|
||||
Dataloaders are provided by the model
|
||||
:param model:
|
||||
@@ -363,7 +405,7 @@ class Trainer(TrainerIO):
|
||||
dist_sampler = torch.utils.data.distributed.DistributedSampler(dataset)
|
||||
dataloader = Dataloader(dataset, sampler=dist_sampler)
|
||||
'''
|
||||
raise Exception(msg)
|
||||
raise MisconfigurationException(msg)
|
||||
|
||||
# -----------------------------
|
||||
# MODEL TRAINING
|
||||
@@ -375,24 +417,14 @@ class Trainer(TrainerIO):
|
||||
# must copy only the meta of the exp so it survives pickle/unpickle when going to new process
|
||||
self.experiment = self.experiment.get_meta_copy()
|
||||
|
||||
# whenever we have the correct number of tasks, we let slurm manage processes
|
||||
# otherwise we launch the required number of processes
|
||||
try:
|
||||
nb_slurm_tasks = int(os.environ['SLURM_NTASKS'])
|
||||
nb_requested_gpus = len(self.data_parallel_device_ids)
|
||||
is_slurm_managing_tasks = nb_slurm_tasks == nb_requested_gpus
|
||||
except Exception as e:
|
||||
# likely not on slurm, so set the slurm managed flag to false
|
||||
is_slurm_managing_tasks = False
|
||||
|
||||
if is_slurm_managing_tasks:
|
||||
if self.is_slurm_managing_tasks:
|
||||
task = int(os.environ['SLURM_LOCALID'])
|
||||
self.ddp_train(task, model)
|
||||
else:
|
||||
msg = f"""
|
||||
You requested {nb_requested_gpus} GPUs but launched {nb_slurm_tasks} slurm tasks.
|
||||
We will launch {nb_requested_gpus} processes for you.
|
||||
We recommend you let slurm manage the processes by setting: --ntasks-per-node={nb_requested_gpus}
|
||||
You requested {self.nb_requested_gpus} GPUs but launched {self.nb_slurm_tasks} slurm tasks.
|
||||
We will launch {self.nb_requested_gpus} processes for you.
|
||||
We recommend you let slurm manage the processes by setting: --ntasks-per-node={self.nb_requested_gpus}
|
||||
If you're not using SLURM, ignore this message!
|
||||
"""
|
||||
warnings.warn(msg)
|
||||
@@ -401,40 +433,41 @@ class Trainer(TrainerIO):
|
||||
# 1 gpu or dp option triggers training using DP module
|
||||
# easier to avoid NCCL issues
|
||||
elif self.use_dp:
|
||||
self.dp_train(model)
|
||||
self.__dp_train(model)
|
||||
|
||||
# ON CPU
|
||||
else:
|
||||
# run through amp wrapper
|
||||
if self.use_amp:
|
||||
raise MisconfigurationException('amp + cpu is not supported. Please use a GPU option')
|
||||
|
||||
# CHOOSE OPTIMIZER
|
||||
# filter out the weights that were done on gpu so we can load on good old cpus
|
||||
self.optimizers = model.configure_optimizers()
|
||||
|
||||
# run through amp wrapper
|
||||
if self.use_amp:
|
||||
# An example
|
||||
model, optimizers = amp.initialize(
|
||||
model, self.optimizers, opt_level=self.amp_level,
|
||||
)
|
||||
self.optimizers = optimizers
|
||||
|
||||
self.__run_pretrain_routine(model)
|
||||
|
||||
def dp_train(self, model):
|
||||
# return 1 when finished
|
||||
# used for testing or when we need to know that training succeeded
|
||||
return 1
|
||||
|
||||
def __dp_train(self, model):
|
||||
|
||||
# CHOOSE OPTIMIZER
|
||||
# filter out the weights that were done on gpu so we can load on good old cpus
|
||||
self.optimizers = model.configure_optimizers()
|
||||
|
||||
model.cuda(self.data_parallel_device_ids[0])
|
||||
model = LightningDataParallel(model, device_ids=self.data_parallel_device_ids)
|
||||
|
||||
# run through amp wrapper
|
||||
if self.use_amp:
|
||||
# An example
|
||||
model, optimizers = amp.initialize(
|
||||
model, self.optimizers, opt_level=self.amp_level,
|
||||
)
|
||||
self.optimizers = optimizers
|
||||
# check for this bug (amp + dp + !01 doesn't work)
|
||||
# https://github.com/NVIDIA/apex/issues/227
|
||||
if self.use_dp and self.use_amp:
|
||||
m = f'amp level {self.amp_level} with DataParallel is not supported. ' \
|
||||
f'See this note from NVIDIA for more info: https://github.com/NVIDIA/apex/issues/227. ' \
|
||||
f'We recommend you switch to ddp if you want to use amp'
|
||||
raise MisconfigurationException(m)
|
||||
|
||||
model = LightningDataParallel(model, device_ids=self.data_parallel_device_ids)
|
||||
|
||||
self.__run_pretrain_routine(model)
|
||||
|
||||
@@ -449,9 +482,10 @@ class Trainer(TrainerIO):
|
||||
# node rank using relative slurm id
|
||||
# otherwise default to node rank 0
|
||||
try:
|
||||
node_rank = int(os.environ['SLURM_NODEID'])
|
||||
except KeyError as e:
|
||||
node_rank = 0
|
||||
node_id = os.environ['SLURM_NODEID']
|
||||
self.node_rank = int(node_id)
|
||||
except Exception as e:
|
||||
self.node_rank = 0
|
||||
|
||||
# recover original exp before went into process
|
||||
# init in write mode only on proc 0
|
||||
@@ -459,12 +493,15 @@ class Trainer(TrainerIO):
|
||||
self.experiment = self.experiment.get_non_ddp_exp()
|
||||
|
||||
# show progbar only on prog_rank 0
|
||||
self.prog_bar = self.prog_bar and node_rank == 0 and gpu_nb == 0
|
||||
self.prog_bar = self.prog_bar and self.node_rank == 0 and gpu_nb == 0
|
||||
|
||||
# determine which process we are and world size
|
||||
self.proc_rank = node_rank * len(self.data_parallel_device_ids) + gpu_nb
|
||||
self.proc_rank = self.node_rank * len(self.data_parallel_device_ids) + gpu_nb
|
||||
self.world_size = self.nb_gpu_nodes * len(self.data_parallel_device_ids)
|
||||
|
||||
# let the exp know the rank to avoid overwriting logs
|
||||
self.experiment.rank = self.proc_rank
|
||||
|
||||
# set up server using proc 0's ip address
|
||||
# try to init for 20 times at max in case ports are taken
|
||||
# where to store ip_table
|
||||
@@ -488,7 +525,7 @@ class Trainer(TrainerIO):
|
||||
)
|
||||
self.optimizers = optimizers
|
||||
|
||||
model = LightningDistributedDataParallel(model, device_ids=[gpu_nb])
|
||||
model = LightningDistributedDataParallel(model, device_ids=[gpu_nb], find_unused_parameters=True)
|
||||
|
||||
# continue training routine
|
||||
self.__run_pretrain_routine(model)
|
||||
@@ -501,22 +538,36 @@ class Trainer(TrainerIO):
|
||||
:param tries:
|
||||
:return:
|
||||
"""
|
||||
# sets the appropriate port
|
||||
try:
|
||||
port = os.environ['MASTER_PORT']
|
||||
except Exception as e:
|
||||
port = 12910
|
||||
os.environ['MASTER_PORT'] = f'{port}'
|
||||
|
||||
# figure out the root node addr
|
||||
try:
|
||||
root_node = os.environ['SLURM_NODELIST'].split(' ')[0]
|
||||
except Exception as e:
|
||||
root_node = '127.0.0.2'
|
||||
|
||||
root_node = self.resolve_root_node_address(root_node)
|
||||
os.environ['MASTER_ADDR'] = root_node
|
||||
|
||||
sleep(self.proc_rank*0.5)
|
||||
dist.init_process_group("nccl", rank=self.proc_rank, world_size=self.world_size)
|
||||
|
||||
def resolve_root_node_address(self, root_node):
|
||||
if '[' in root_node:
|
||||
name = root_node.split('[')[0]
|
||||
number = root_node.split(',')[0]
|
||||
if '-' in number:
|
||||
number = number.split('-')[0]
|
||||
|
||||
number = re.sub('[^0-9]', '', number)
|
||||
root_node = name + number
|
||||
|
||||
return root_node
|
||||
|
||||
def __run_pretrain_routine(self, model):
|
||||
"""
|
||||
Sanity check a few things before starting actual training
|
||||
@@ -533,7 +584,7 @@ class Trainer(TrainerIO):
|
||||
ref_model.on_gpu = self.on_gpu
|
||||
|
||||
# transfer data loaders from model
|
||||
self.__get_dataloaders(ref_model)
|
||||
self.get_dataloaders(ref_model)
|
||||
|
||||
# init training constants
|
||||
self.__layout_bookeeping()
|
||||
@@ -559,14 +610,18 @@ class Trainer(TrainerIO):
|
||||
if self.proc_rank == 0:
|
||||
self.experiment.save()
|
||||
|
||||
# track model now.
|
||||
# if cluster resets state, the model will update with the saved weights
|
||||
self.model = model
|
||||
|
||||
# enable cluster checkpointing
|
||||
if self.cluster is not None:
|
||||
# also restores training state
|
||||
if self.cluster is not None: # pragma: no cover
|
||||
self.enable_auto_hpc_walltime_manager()
|
||||
|
||||
# ---------------------------
|
||||
# CORE TRAINING LOOP
|
||||
# ---------------------------
|
||||
self.model = model
|
||||
self.__train()
|
||||
|
||||
def __train(self):
|
||||
@@ -629,7 +684,7 @@ class Trainer(TrainerIO):
|
||||
# nb_params, nb_tensors = count_mem_items()
|
||||
|
||||
model = self.__get_model()
|
||||
metrics = model.update_tng_log_metrics(self.__tng_tqdm_dic)
|
||||
metrics = self.__tng_tqdm_dic
|
||||
|
||||
# add gpu memory
|
||||
if self.on_gpu:
|
||||
@@ -743,6 +798,11 @@ class Trainer(TrainerIO):
|
||||
else:
|
||||
loss.backward()
|
||||
|
||||
# insert after step hook
|
||||
if self.__is_function_implemented('on_after_backward'):
|
||||
model_ref = self.__get_model()
|
||||
response = model_ref.on_after_backward()
|
||||
|
||||
if self.print_nan_grads:
|
||||
model = self.__get_model()
|
||||
for param in model.parameters():
|
||||
@@ -763,6 +823,11 @@ class Trainer(TrainerIO):
|
||||
for optimizer in self.optimizers:
|
||||
optimizer.step()
|
||||
|
||||
# insert after step hook
|
||||
if self.__is_function_implemented('on_before_zero_grad'):
|
||||
model_ref = self.__get_model()
|
||||
response = model_ref.on_before_zero_grad(optimizer)
|
||||
|
||||
# clear gradients
|
||||
optimizer.zero_grad()
|
||||
|
||||
@@ -795,30 +860,25 @@ class Trainer(TrainerIO):
|
||||
elif not can_check_epoch:
|
||||
return
|
||||
|
||||
try:
|
||||
# hook
|
||||
if self.__is_function_implemented('on_pre_performance_check'):
|
||||
model = self.__get_model()
|
||||
model.on_pre_performance_check()
|
||||
# hook
|
||||
if self.__is_function_implemented('on_pre_performance_check'):
|
||||
model = self.__get_model()
|
||||
model.on_pre_performance_check()
|
||||
|
||||
# use full val set on end of epoch
|
||||
# use a small portion otherwise
|
||||
max_batches = None if not self.fast_dev_run else 1
|
||||
model_specific_tqdm_metrics_dic = self.validate(
|
||||
self.model,
|
||||
self.val_dataloader,
|
||||
max_batches
|
||||
)
|
||||
self.__add_tqdm_metrics(model_specific_tqdm_metrics_dic)
|
||||
# use full val set on end of epoch
|
||||
# use a small portion otherwise
|
||||
max_batches = None if not self.fast_dev_run else 1
|
||||
model_specific_tqdm_metrics_dic = self.validate(
|
||||
self.model,
|
||||
self.val_dataloader,
|
||||
max_batches
|
||||
)
|
||||
self.__add_tqdm_metrics(model_specific_tqdm_metrics_dic)
|
||||
|
||||
# hook
|
||||
if self.__is_function_implemented('on_post_performance_check'):
|
||||
model = self.__get_model()
|
||||
model.on_post_performance_check()
|
||||
|
||||
except Exception as e:
|
||||
print(e)
|
||||
print(traceback.print_exc())
|
||||
# hook
|
||||
if self.__is_function_implemented('on_post_performance_check'):
|
||||
model = self.__get_model()
|
||||
model.on_post_performance_check()
|
||||
|
||||
if self.progress_bar:
|
||||
# add model specific metrics
|
||||
@@ -826,6 +886,6 @@ class Trainer(TrainerIO):
|
||||
self.prog_bar.set_postfix(**tqdm_metrics)
|
||||
|
||||
# model checkpointing
|
||||
if self.proc_rank == 0 and self.checkpoint_callback:
|
||||
if self.proc_rank == 0 and self.checkpoint_callback is not None:
|
||||
print('save callback...')
|
||||
self.checkpoint_callback.on_epoch_end(epoch=self.current_epoch, logs=self.__tng_tqdm_dic)
|
||||
|
||||
@@ -9,7 +9,7 @@ from torch.cuda._utils import _get_device_index
|
||||
import pdb
|
||||
|
||||
|
||||
def _find_tensors(obj):
|
||||
def _find_tensors(obj): # pragma: no cover
|
||||
r"""
|
||||
Recursively find all tensors contained in the specified object.
|
||||
"""
|
||||
@@ -22,8 +22,7 @@ def _find_tensors(obj):
|
||||
return []
|
||||
|
||||
|
||||
|
||||
def get_a_var(obj):
|
||||
def get_a_var(obj): # pragma: no cover
|
||||
if isinstance(obj, torch.Tensor):
|
||||
return obj
|
||||
|
||||
@@ -78,7 +77,7 @@ class LightningDistributedDataParallel(DistributedDataParallel):
|
||||
def parallel_apply(self, replicas, inputs, kwargs):
|
||||
return parallel_apply(replicas, inputs, kwargs, self.device_ids[:len(replicas)])
|
||||
|
||||
def forward(self, *inputs, **kwargs):
|
||||
def forward(self, *inputs, **kwargs): # pragma: no cover
|
||||
self._sync_params()
|
||||
if self.device_ids:
|
||||
inputs, kwargs = self.scatter(inputs, kwargs, self.device_ids)
|
||||
@@ -113,7 +112,7 @@ class LightningDistributedDataParallel(DistributedDataParallel):
|
||||
return output
|
||||
|
||||
|
||||
def parallel_apply(modules, inputs, kwargs_tup=None, devices=None):
|
||||
def parallel_apply(modules, inputs, kwargs_tup=None, devices=None): # pragma: no cover
|
||||
r"""Applies each `module` in :attr:`modules` in parallel on arguments
|
||||
contained in :attr:`inputs` (positional) and :attr:`kwargs_tup` (keyword)
|
||||
on each of :attr:`devices`.
|
||||
|
||||
@@ -0,0 +1,17 @@
|
||||
|
||||
def data_loader(fn):
|
||||
"""
|
||||
Decorator to make any fx with this use the lazy property
|
||||
:param fn:
|
||||
:return:
|
||||
"""
|
||||
|
||||
attr_name = '_lazy_' + fn.__name__
|
||||
|
||||
@property
|
||||
def _data_loader(self):
|
||||
if not hasattr(self, attr_name):
|
||||
setattr(self, attr_name, fn(self))
|
||||
return getattr(self, attr_name)
|
||||
|
||||
return _data_loader
|
||||
@@ -27,14 +27,3 @@ class GradInformation(nn.Module):
|
||||
results['grad_{}_norm_total'.format(norm_type)] = round(total_norm.data.cpu().numpy().flatten()[0], 3)
|
||||
return results
|
||||
|
||||
|
||||
def describe_grads(self):
|
||||
for p in self.parameters():
|
||||
g = p.grad.data.numpy().flatten()
|
||||
print(np.max(g), np.min(g), np.mean(g))
|
||||
|
||||
|
||||
def describe_params(self):
|
||||
for p in self.parameters():
|
||||
g = p.data.numpy().flatten()
|
||||
print(np.max(g), np.min(g), np.mean(g))
|
||||
@@ -22,3 +22,24 @@ class ModelHooks(torch.nn.Module):
|
||||
def on_tng_metrics(self, metrics):
|
||||
pass
|
||||
|
||||
def on_before_zero_grad(self, optimizer):
|
||||
"""
|
||||
Called after optimizer.step() and before optimizer.zero_grad()
|
||||
|
||||
for optimizer in optimizers:
|
||||
optimizer.step()
|
||||
model.on_before_zero_grad(optimizer) # < ---- called here
|
||||
optimizer.zero_grad
|
||||
|
||||
:param optimizer:
|
||||
:return:
|
||||
"""
|
||||
pass
|
||||
|
||||
def on_after_backward(self):
|
||||
"""
|
||||
Called after loss.backward() and before optimizers do anything
|
||||
:return:
|
||||
"""
|
||||
pass
|
||||
|
||||
|
||||
@@ -33,33 +33,42 @@ class ModelSummary(object):
|
||||
mods = list(self.model.modules())
|
||||
in_sizes = []
|
||||
out_sizes = []
|
||||
input_ = self.example_input_array
|
||||
for i in range(1, len(mods)):
|
||||
m = mods[i]
|
||||
if type(input_) is list or type(input_) is tuple:
|
||||
out = m(*input_)
|
||||
else:
|
||||
out = m(input_)
|
||||
input_ = self.model.example_input_array
|
||||
|
||||
if type(input_) is tuple or type(input_) is list:
|
||||
in_size = []
|
||||
for x in input_:
|
||||
if type(x) is list:
|
||||
in_size.append(len(x))
|
||||
else:
|
||||
in_size.append(x.size())
|
||||
else:
|
||||
in_size = np.array(input_.size())
|
||||
if self.model.on_gpu:
|
||||
input_ = input_.cuda(0)
|
||||
|
||||
in_sizes.append(in_size)
|
||||
if self.model.trainer.use_amp:
|
||||
input_ = input_.half()
|
||||
|
||||
if type(out) is tuple or type(out) is list:
|
||||
out_size = np.asarray([x.size() for x in out])
|
||||
else:
|
||||
out_size = np.array(out.size())
|
||||
with torch.no_grad():
|
||||
|
||||
out_sizes.append(out_size)
|
||||
input_ = out
|
||||
for i in range(1, len(mods)):
|
||||
m = mods[i]
|
||||
if type(input_) is list or type(input_) is tuple: # pragma: no cover
|
||||
out = m(*input_)
|
||||
else:
|
||||
out = m(input_)
|
||||
|
||||
if type(input_) is tuple or type(input_) is list: # pragma: no cover
|
||||
in_size = []
|
||||
for x in input_:
|
||||
if type(x) is list:
|
||||
in_size.append(len(x))
|
||||
else:
|
||||
in_size.append(x.size())
|
||||
else:
|
||||
in_size = np.array(input_.size())
|
||||
|
||||
in_sizes.append(in_size)
|
||||
|
||||
if type(out) is tuple or type(out) is list: # pragma: no cover
|
||||
out_size = np.asarray([x.size() for x in out])
|
||||
else:
|
||||
out_size = np.array(out.size())
|
||||
|
||||
out_sizes.append(out_size)
|
||||
input_ = out
|
||||
|
||||
self.in_sizes = in_sizes
|
||||
self.out_sizes = out_sizes
|
||||
@@ -114,13 +123,22 @@ class ModelSummary(object):
|
||||
Layer Name, Layer Type, Input Size, Output Size, Number of Parameters
|
||||
'''
|
||||
|
||||
df = pd.DataFrame( np.zeros( (len(self.layer_names), 3) ) )
|
||||
df.columns = ['Name', 'Type', 'Params']
|
||||
cols = ['Name', 'Type', 'Params']
|
||||
if self.model.example_input_array is not None:
|
||||
cols.extend(['In_sizes', 'Out_sizes'])
|
||||
|
||||
df = pd.DataFrame(np.zeros( (len(self.layer_names), len(cols))))
|
||||
df.columns = cols
|
||||
|
||||
df['Name'] = self.layer_names
|
||||
df['Type'] = self.layer_types
|
||||
df['Params'] = self.param_nums
|
||||
|
||||
if self.model.example_input_array is not None:
|
||||
|
||||
df['In_sizes'] = self.in_sizes
|
||||
df['Out_sizes'] = self.out_sizes
|
||||
|
||||
self.summary = df
|
||||
return
|
||||
|
||||
@@ -128,10 +146,13 @@ class ModelSummary(object):
|
||||
self.get_layer_names()
|
||||
self.get_parameter_sizes()
|
||||
self.get_parameter_nums()
|
||||
|
||||
if self.model.example_input_array is not None:
|
||||
self.get_variable_sizes()
|
||||
self.make_summary()
|
||||
|
||||
|
||||
def print_mem_stack():
|
||||
def print_mem_stack(): # pragma: no cover
|
||||
for obj in gc.get_objects():
|
||||
try:
|
||||
if torch.is_tensor(obj) or (hasattr(obj, 'data') and torch.is_tensor(obj.data)):
|
||||
@@ -140,7 +161,7 @@ def print_mem_stack():
|
||||
pass
|
||||
|
||||
|
||||
def count_mem_items():
|
||||
def count_mem_items(): # pragma: no cover
|
||||
nb_params = 0
|
||||
nb_tensors = 0
|
||||
for obj in gc.get_objects():
|
||||
|
||||
@@ -4,34 +4,36 @@ import re
|
||||
import pdb
|
||||
from pytorch_lightning.pt_overrides.override_data_parallel import LightningDistributedDataParallel, LightningDataParallel
|
||||
|
||||
|
||||
class ModelIO(object):
|
||||
|
||||
def load_model_specific(self, checkpoint):
|
||||
def on_load_checkpoint(self, checkpoint):
|
||||
"""
|
||||
Do something with the checkpoint
|
||||
Gives model a chance to load something before state_dict is restored
|
||||
:param checkpoint:
|
||||
:return:
|
||||
"""
|
||||
raise NotImplementedError
|
||||
pass
|
||||
|
||||
def get_save_dict(self):
|
||||
def on_save_checkpoint(self, checkpoint):
|
||||
"""
|
||||
Return specific things for the model
|
||||
:return:
|
||||
Give the model a chance to add something to the checkpoint.
|
||||
state_dict is already there
|
||||
"""
|
||||
raise NotImplementedError
|
||||
pass
|
||||
|
||||
# -------------------------
|
||||
# OPTIONAL HOOKS
|
||||
# -------------------------
|
||||
def on_hpc_save(self):
|
||||
def on_hpc_save(self, checkpoint):
|
||||
"""
|
||||
Hook to do whatever you need right before Slurm manager saves the model
|
||||
:return:
|
||||
"""
|
||||
pass
|
||||
|
||||
def on_hpc_load(self):
|
||||
def on_hpc_load(self, checkpoint):
|
||||
"""
|
||||
Hook to do whatever you need right before Slurm manager loads the model
|
||||
:return:
|
||||
@@ -41,6 +43,11 @@ class ModelIO(object):
|
||||
|
||||
class TrainerIO(object):
|
||||
|
||||
def __get_model(self):
|
||||
is_dp_module = type(self.model) is LightningDistributedDataParallel or type(self.model) is LightningDataParallel
|
||||
model = self.model.module if is_dp_module else self.model
|
||||
return model
|
||||
|
||||
# --------------------
|
||||
# MODEL SAVE CHECKPOINT
|
||||
# --------------------
|
||||
@@ -51,27 +58,32 @@ class TrainerIO(object):
|
||||
torch.save(checkpoint, filepath)
|
||||
|
||||
def dump_checkpoint(self):
|
||||
|
||||
checkpoint = {
|
||||
'epoch': self.current_epoch,
|
||||
'checkpoint_callback_best': self.checkpoint_callback.best,
|
||||
'early_stop_callback_wait': self.early_stop_callback.wait,
|
||||
'early_stop_callback_patience': self.early_stop_callback.patience,
|
||||
'global_step': self.global_step
|
||||
}
|
||||
|
||||
if self.checkpoint_callback is not None:
|
||||
checkpoint['checkpoint_callback_best'] = self.checkpoint_callback.best
|
||||
|
||||
if self.early_stop_callback is not None:
|
||||
checkpoint['early_stop_callback_wait'] = self.early_stop_callback.wait
|
||||
checkpoint['early_stop_callback_patience'] = self.early_stop_callback.patience
|
||||
|
||||
optimizer_states = []
|
||||
for i, optimizer in enumerate(self.optimizers):
|
||||
optimizer_states.append(optimizer.state_dict())
|
||||
|
||||
checkpoint['optimizer_states'] = optimizer_states
|
||||
|
||||
# request what to save from the model
|
||||
is_dp_module = type(self.model) is LightningDistributedDataParallel or type(self.model) is LightningDataParallel
|
||||
model = self.model.module if is_dp_module else self.model
|
||||
checkpoint_dict = model.get_save_dict()
|
||||
# add the state_dict from the model
|
||||
model = self.__get_model()
|
||||
checkpoint['state_dict'] = model.state_dict()
|
||||
|
||||
# give the model a chance to add a few things
|
||||
model.on_save_checkpoint(checkpoint)
|
||||
|
||||
# merge trainer and model saving items
|
||||
checkpoint.update(checkpoint_dict)
|
||||
return checkpoint
|
||||
|
||||
# --------------------
|
||||
@@ -104,9 +116,13 @@ class TrainerIO(object):
|
||||
:param checkpoint:
|
||||
:return:
|
||||
"""
|
||||
self.checkpoint_callback.best = checkpoint['checkpoint_callback_best']
|
||||
self.early_stop_callback.wait = checkpoint['early_stop_callback_wait']
|
||||
self.early_stop_callback.patience = checkpoint['early_stop_callback_patience']
|
||||
if self.checkpoint_callback is not None:
|
||||
self.checkpoint_callback.best = checkpoint['checkpoint_callback_best']
|
||||
|
||||
if self.early_stop_callback is not None:
|
||||
self.early_stop_callback.wait = checkpoint['early_stop_callback_wait']
|
||||
self.early_stop_callback.patience = checkpoint['early_stop_callback_patience']
|
||||
|
||||
self.global_step = checkpoint['global_step']
|
||||
self.current_epoch = checkpoint['epoch']
|
||||
|
||||
@@ -135,13 +151,15 @@ class TrainerIO(object):
|
||||
filepath = '{}/hpc_ckpt_{}.ckpt'.format(folderpath, ckpt_number)
|
||||
|
||||
# give model a chance to do something on hpc_save
|
||||
self.on_hpc_save()
|
||||
model = self.__get_model()
|
||||
checkpoint = self.dump_checkpoint()
|
||||
|
||||
# request what to save from the model
|
||||
checkpoint_dict = self.dump_checkpoint()
|
||||
model.on_hpc_save(checkpoint)
|
||||
|
||||
# do the actual save
|
||||
torch.save(checkpoint_dict, filepath)
|
||||
torch.save(checkpoint, filepath)
|
||||
|
||||
return filepath
|
||||
|
||||
def hpc_load(self, folderpath, on_gpu):
|
||||
filepath = '{}/hpc_ckpt_{}.ckpt'.format(folderpath, self.max_ckpt_in_folder(folderpath))
|
||||
@@ -151,15 +169,17 @@ class TrainerIO(object):
|
||||
else:
|
||||
checkpoint = torch.load(filepath, map_location=lambda storage, loc: storage)
|
||||
|
||||
# load training state
|
||||
# load training state (affects trainer only)
|
||||
self.restore_training_state(checkpoint)
|
||||
|
||||
# load model state
|
||||
model = self.model.module if type(self.model) is LightningDataParallel else self.model
|
||||
model.load_model_specific(checkpoint)
|
||||
model = self.__get_model()
|
||||
|
||||
# load the state_dict on the model automatically
|
||||
model.load_state_dict(checkpoint['state_dict'])
|
||||
|
||||
# call model hook
|
||||
self.on_hpc_load()
|
||||
model.on_hpc_load(checkpoint)
|
||||
|
||||
def max_ckpt_in_folder(self, path):
|
||||
files = os.listdir(path)
|
||||
|
||||
@@ -1,22 +0,0 @@
|
||||
from torch import nn
|
||||
from torch import optim
|
||||
|
||||
|
||||
class OptimizerConfig(nn.Module):
|
||||
|
||||
def choose_optimizer(self, optimizer, params, optimizer_params, opt_name_key):
|
||||
if optimizer == 'adam':
|
||||
optimizer = optim.Adam(params, **optimizer_params)
|
||||
if optimizer == 'sparse_adam':
|
||||
optimizer = optim.SparseAdam(params, **optimizer_params)
|
||||
if optimizer == 'sgd':
|
||||
optimizer = optim.SGD(params, **optimizer_params)
|
||||
if optimizer == 'adadelta':
|
||||
optimizer = optim.Adadelta(params, **optimizer_params)
|
||||
|
||||
# transfer opt state if loaded
|
||||
if opt_name_key in self.loaded_optimizer_states_dict:
|
||||
state = self.loaded_optimizer_states_dict[opt_name_key]
|
||||
optimizer.load_state_dict(state)
|
||||
|
||||
return optimizer
|
||||
@@ -1,19 +1,15 @@
|
||||
import os
|
||||
import torch
|
||||
import math
|
||||
|
||||
from pytorch_lightning.root_module.memory import ModelSummary
|
||||
from pytorch_lightning.root_module.grads import GradInformation
|
||||
from pytorch_lightning.root_module.model_saving import ModelIO, load_hparams_from_tags_csv
|
||||
from pytorch_lightning.root_module.optimization import OptimizerConfig
|
||||
from pytorch_lightning.root_module.hooks import ModelHooks
|
||||
from pytorch_lightning.root_module.decorators import data_loader
|
||||
|
||||
|
||||
class LightningModule(GradInformation, ModelIO, OptimizerConfig, ModelHooks):
|
||||
class LightningModule(GradInformation, ModelIO, ModelHooks):
|
||||
|
||||
def __init__(self, hparams):
|
||||
super(LightningModule, self).__init__()
|
||||
self.hparams = hparams
|
||||
def __init__(self, *args, **kwargs):
|
||||
super(LightningModule, self).__init__(*args, **kwargs)
|
||||
|
||||
self.dtype = torch.FloatTensor
|
||||
self.exp_save_path = None
|
||||
@@ -22,15 +18,11 @@ class LightningModule(GradInformation, ModelIO, OptimizerConfig, ModelHooks):
|
||||
self.loaded_optimizer_states_dict = {}
|
||||
self.trainer = None
|
||||
self.experiment = None
|
||||
self.example_input_array = None
|
||||
|
||||
# track if gpu was requested for checkpointing
|
||||
self.on_gpu = False
|
||||
|
||||
# computed vars for the dataloaders
|
||||
self._tng_dataloader = None
|
||||
self._val_dataloader = None
|
||||
self._test_dataloader = None
|
||||
|
||||
def forward(self, *args, **kwargs):
|
||||
"""
|
||||
Expand model in into whatever you need.
|
||||
@@ -71,37 +63,7 @@ class LightningModule(GradInformation, ModelIO, OptimizerConfig, ModelHooks):
|
||||
"""
|
||||
raise NotImplementedError
|
||||
|
||||
def update_tng_log_metrics(self, logs):
|
||||
"""
|
||||
Chance to update metrics to be logged for training step.
|
||||
For example, add music, images, etc... to log
|
||||
:param logs:
|
||||
:return:
|
||||
"""
|
||||
return logs
|
||||
|
||||
def loss(self, *args, **kwargs):
|
||||
"""
|
||||
Expand model_out into your components
|
||||
:param model_out:
|
||||
:return:
|
||||
"""
|
||||
raise NotImplementedError
|
||||
|
||||
def summarize(self):
|
||||
model_summary = ModelSummary(self)
|
||||
print(model_summary)
|
||||
|
||||
|
||||
def freeze(self):
|
||||
for param in self.parameters():
|
||||
param.requires_grad = False
|
||||
|
||||
def unfreeze(self):
|
||||
for param in self.parameters():
|
||||
param.requires_grad = True
|
||||
|
||||
@property
|
||||
@data_loader
|
||||
def tng_dataloader(self):
|
||||
"""
|
||||
Implement a function to load an h5py of this data
|
||||
@@ -109,7 +71,7 @@ class LightningModule(GradInformation, ModelIO, OptimizerConfig, ModelHooks):
|
||||
"""
|
||||
raise NotImplementedError
|
||||
|
||||
@property
|
||||
@data_loader
|
||||
def test_dataloader(self):
|
||||
"""
|
||||
Implement a function to load an h5py of this data
|
||||
@@ -117,7 +79,7 @@ class LightningModule(GradInformation, ModelIO, OptimizerConfig, ModelHooks):
|
||||
"""
|
||||
raise NotImplementedError
|
||||
|
||||
@property
|
||||
@data_loader
|
||||
def val_dataloader(self):
|
||||
"""
|
||||
Implement a function to load an h5py of this data
|
||||
@@ -125,16 +87,6 @@ class LightningModule(GradInformation, ModelIO, OptimizerConfig, ModelHooks):
|
||||
"""
|
||||
raise NotImplementedError
|
||||
|
||||
@staticmethod
|
||||
def get_process_position(gpus):
|
||||
try:
|
||||
current_gpu = os.environ["CUDA_VISIBLE_DEVICES"]
|
||||
gpu_ids = gpus.split(',')
|
||||
process_position = gpu_ids.index(current_gpu)
|
||||
return process_position, current_gpu
|
||||
except Exception as e:
|
||||
return 0, 0
|
||||
|
||||
@classmethod
|
||||
def load_from_metrics(cls, weights_path, tags_csv, on_gpu, map_location=None):
|
||||
"""
|
||||
@@ -156,9 +108,26 @@ class LightningModule(GradInformation, ModelIO, OptimizerConfig, ModelHooks):
|
||||
else:
|
||||
checkpoint = torch.load(weights_path, map_location=lambda storage, loc: storage)
|
||||
|
||||
# load the state_dict on the model automatically
|
||||
model = cls(hparams)
|
||||
model.load_state_dict(checkpoint['state_dict'])
|
||||
|
||||
# give model a chance to load something
|
||||
model.on_load_checkpoint(checkpoint)
|
||||
|
||||
# allow model to load
|
||||
model.load_model_specific(checkpoint)
|
||||
model.load_state_dict(checkpoint['state_dict'], strict=False)
|
||||
return model
|
||||
|
||||
def summarize(self):
|
||||
model_summary = ModelSummary(self)
|
||||
print(model_summary)
|
||||
|
||||
def freeze(self):
|
||||
for param in self.parameters():
|
||||
param.requires_grad = False
|
||||
|
||||
def unfreeze(self):
|
||||
for param in self.parameters():
|
||||
param.requires_grad = True
|
||||
|
||||
|
||||
|
||||
|
||||
@@ -0,0 +1,253 @@
|
||||
import os
|
||||
from collections import OrderedDict
|
||||
import torch.nn as nn
|
||||
from torchvision.datasets import MNIST
|
||||
import torchvision.transforms as transforms
|
||||
import torch
|
||||
import torch.nn.functional as F
|
||||
from test_tube import HyperOptArgumentParser
|
||||
from torch import optim
|
||||
from torch.utils.data import DataLoader
|
||||
from torch.utils.data.distributed import DistributedSampler
|
||||
|
||||
from pytorch_lightning.root_module.root_module import LightningModule
|
||||
import pytorch_lightning as ptl
|
||||
|
||||
|
||||
class LightningTestModel(LightningModule):
|
||||
"""
|
||||
Sample model to show how to define a template
|
||||
"""
|
||||
|
||||
def __init__(self, hparams, force_remove_distributed_sampler=False):
|
||||
"""
|
||||
Pass in parsed HyperOptArgumentParser to the model
|
||||
:param hparams:
|
||||
"""
|
||||
# init superclass
|
||||
super(LightningTestModel, self).__init__()
|
||||
self.hparams = hparams
|
||||
|
||||
self.batch_size = hparams.batch_size
|
||||
|
||||
# if you specify an example input, the summary will show input/output for each layer
|
||||
self.example_input_array = torch.rand(5, 28 * 28)
|
||||
|
||||
# remove to test warning for dist sampler
|
||||
self.force_remove_distributed_sampler = force_remove_distributed_sampler
|
||||
|
||||
# build model
|
||||
self.__build_model()
|
||||
|
||||
# ---------------------
|
||||
# MODEL SETUP
|
||||
# ---------------------
|
||||
def __build_model(self):
|
||||
"""
|
||||
Layout model
|
||||
:return:
|
||||
"""
|
||||
self.c_d1 = nn.Linear(in_features=self.hparams.in_features, out_features=self.hparams.hidden_dim)
|
||||
self.c_d1_bn = nn.BatchNorm1d(self.hparams.hidden_dim)
|
||||
self.c_d1_drop = nn.Dropout(self.hparams.drop_prob)
|
||||
|
||||
self.c_d2 = nn.Linear(in_features=self.hparams.hidden_dim, out_features=self.hparams.out_features)
|
||||
|
||||
# ---------------------
|
||||
# TRAINING
|
||||
# ---------------------
|
||||
def forward(self, x):
|
||||
"""
|
||||
No special modification required for lightning, define as you normally would
|
||||
:param x:
|
||||
:return:
|
||||
"""
|
||||
|
||||
x = self.c_d1(x)
|
||||
x = torch.tanh(x)
|
||||
x = self.c_d1_bn(x)
|
||||
x = self.c_d1_drop(x)
|
||||
|
||||
x = self.c_d2(x)
|
||||
logits = F.log_softmax(x, dim=1)
|
||||
|
||||
return logits
|
||||
|
||||
def loss(self, labels, logits):
|
||||
nll = F.nll_loss(logits, labels)
|
||||
return nll
|
||||
|
||||
def training_step(self, data_batch, batch_i):
|
||||
"""
|
||||
Lightning calls this inside the training loop
|
||||
:param data_batch:
|
||||
:return:
|
||||
"""
|
||||
# forward pass
|
||||
x, y = data_batch
|
||||
x = x.view(x.size(0), -1)
|
||||
|
||||
y_hat = self.forward(x)
|
||||
|
||||
# calculate loss
|
||||
loss_val = self.loss(y, y_hat)
|
||||
|
||||
# in DP mode (default) make sure if result is scalar, there's another dim in the beginning
|
||||
if self.trainer.use_dp:
|
||||
loss_val = loss_val.unsqueeze(0)
|
||||
|
||||
output = OrderedDict({
|
||||
'loss': loss_val
|
||||
})
|
||||
|
||||
# can also return just a scalar instead of a dict (return loss_val)
|
||||
return output
|
||||
|
||||
def validation_step(self, data_batch, batch_i):
|
||||
"""
|
||||
Lightning calls this inside the validation loop
|
||||
:param data_batch:
|
||||
:return:
|
||||
"""
|
||||
x, y = data_batch
|
||||
x = x.view(x.size(0), -1)
|
||||
y_hat = self.forward(x)
|
||||
|
||||
loss_val = self.loss(y, y_hat)
|
||||
|
||||
# acc
|
||||
labels_hat = torch.argmax(y_hat, dim=1)
|
||||
val_acc = torch.sum(y == labels_hat).item() / (len(y) * 1.0)
|
||||
val_acc = torch.tensor(val_acc)
|
||||
|
||||
if self.on_gpu:
|
||||
val_acc = val_acc.cuda(loss_val.device.index)
|
||||
|
||||
# in DP mode (default) make sure if result is scalar, there's another dim in the beginning
|
||||
if self.trainer.use_dp:
|
||||
loss_val = loss_val.unsqueeze(0)
|
||||
val_acc = val_acc.unsqueeze(0)
|
||||
|
||||
# alternate possible outputs to test
|
||||
if self.trainer.batch_nb % 1 == 0:
|
||||
output = OrderedDict({
|
||||
'val_loss': loss_val,
|
||||
'val_acc': val_acc,
|
||||
})
|
||||
return output
|
||||
if self.trainer.batch_nb % 2 == 0:
|
||||
return val_acc
|
||||
|
||||
if self.trainer.batch_nb % 3 == 0:
|
||||
output = OrderedDict({
|
||||
'val_loss': loss_val,
|
||||
'val_acc': val_acc,
|
||||
'test_dic': {'val_loss_a': loss_val}
|
||||
})
|
||||
return output
|
||||
|
||||
def validation_end(self, outputs):
|
||||
"""
|
||||
Called at the end of validation to aggregate outputs
|
||||
:param outputs: list of individual outputs of each validation step
|
||||
:return:
|
||||
"""
|
||||
# if returned a scalar from validation_step, outputs is a list of tensor scalars
|
||||
# we return just the average in this case (if we want)
|
||||
# return torch.stack(outputs).mean()
|
||||
|
||||
val_loss_mean = 0
|
||||
val_acc_mean = 0
|
||||
for output in outputs:
|
||||
val_loss_mean += output['val_loss']
|
||||
val_acc_mean += output['val_acc']
|
||||
|
||||
val_loss_mean /= len(outputs)
|
||||
val_acc_mean /= len(outputs)
|
||||
|
||||
tqdm_dic = {'val_loss': val_loss_mean.item(), 'val_acc': val_acc_mean.item()}
|
||||
return tqdm_dic
|
||||
|
||||
def on_tng_metrics(self, logs):
|
||||
logs['some_tensor_to_test'] = torch.rand(1)
|
||||
|
||||
# ---------------------
|
||||
# TRAINING SETUP
|
||||
# ---------------------
|
||||
def configure_optimizers(self):
|
||||
"""
|
||||
return whatever optimizers we want here
|
||||
:return: list of optimizers
|
||||
"""
|
||||
optimizer = optim.Adam(self.parameters(), lr=self.hparams.learning_rate)
|
||||
return [optimizer]
|
||||
|
||||
def __dataloader(self, train):
|
||||
# init data generators
|
||||
transform = transforms.Compose([transforms.ToTensor(), transforms.Normalize((0.5,), (1.0,))])
|
||||
dataset = MNIST(root=self.hparams.data_root, train=train, transform=transform, download=True)
|
||||
|
||||
# when using multi-node we need to add the datasampler
|
||||
train_sampler = None
|
||||
batch_size = self.hparams.batch_size
|
||||
|
||||
try:
|
||||
if self.on_gpu and not self.force_remove_distributed_sampler:
|
||||
train_sampler = DistributedSampler(dataset, rank=self.trainer.proc_rank)
|
||||
batch_size = batch_size // self.trainer.world_size # scale batch size
|
||||
except Exception as e:
|
||||
pass
|
||||
|
||||
should_shuffle = train_sampler is None
|
||||
loader = DataLoader(
|
||||
dataset=dataset,
|
||||
batch_size=batch_size,
|
||||
shuffle=should_shuffle,
|
||||
sampler=train_sampler
|
||||
)
|
||||
|
||||
return loader
|
||||
|
||||
@ptl.data_loader
|
||||
def tng_dataloader(self):
|
||||
return self.__dataloader(train=True)
|
||||
|
||||
@ptl.data_loader
|
||||
def val_dataloader(self):
|
||||
return self.__dataloader(train=False)
|
||||
|
||||
@ptl.data_loader
|
||||
def test_dataloader(self):
|
||||
return self.__dataloader(train=False)
|
||||
|
||||
@staticmethod
|
||||
def add_model_specific_args(parent_parser, root_dir):
|
||||
"""
|
||||
Parameters you define here will be available to your model through self.hparams
|
||||
:param parent_parser:
|
||||
:param root_dir:
|
||||
:return:
|
||||
"""
|
||||
parser = HyperOptArgumentParser(strategy=parent_parser.strategy, parents=[parent_parser])
|
||||
|
||||
# param overwrites
|
||||
# parser.set_defaults(gradient_clip=5.0)
|
||||
|
||||
# network params
|
||||
parser.opt_list('--drop_prob', default=0.2, options=[0.2, 0.5], type=float, tunable=False)
|
||||
parser.add_argument('--in_features', default=28*28, type=int)
|
||||
parser.add_argument('--out_features', default=10, type=int)
|
||||
parser.add_argument('--hidden_dim', default=50000, type=int) # use 500 for CPU, 50000 for GPU to see speed difference
|
||||
|
||||
# data
|
||||
parser.add_argument('--data_root', default=os.path.join(root_dir, 'mnist'), type=str)
|
||||
|
||||
# training params (opt)
|
||||
parser.opt_list('--learning_rate', default=0.001*8, type=float, options=[0.0001, 0.0005, 0.001, 0.005],
|
||||
tunable=False)
|
||||
parser.opt_list('--optimizer_name', default='adam', type=str, options=['adam'], tunable=False)
|
||||
|
||||
# if using 2 nodes with 4 gpus each the batch size here (256) will be 256 / (2*8) = 16 per gpu
|
||||
parser.opt_list('--batch_size', default=256*8, type=int, options=[32, 64, 128, 256], tunable=False,
|
||||
help='batch size will be divided over all the gpus being used across all nodes')
|
||||
return parser
|
||||
@@ -52,10 +52,6 @@ def main(hparams, cluster, results_dict):
|
||||
hparams.__setattr__('nb_gpus', torch.cuda.device_count())
|
||||
hparams.__setattr__('inference_mode', hparams.model_load_weights_path is not None)
|
||||
|
||||
# delay each training start to not overwrite logs
|
||||
process_position, current_gpu = TRAINING_MODEL.get_process_position(hparams.gpus)
|
||||
sleep(process_position + 1)
|
||||
|
||||
# init experiment
|
||||
exp = Experiment(
|
||||
name=hparams.tt_name,
|
||||
|
||||
@@ -0,0 +1,5 @@
|
||||
import pdb
|
||||
import sys
|
||||
|
||||
class MisconfigurationException(Exception):
|
||||
pass
|
||||
@@ -1,104 +0,0 @@
|
||||
import torch
|
||||
import numpy as np
|
||||
from copy import deepcopy
|
||||
|
||||
|
||||
class PretrainedEmbedding(torch.nn.Embedding):
|
||||
|
||||
def __init__(self, embedding_path, embedding_dim, task_vocab, freeze=True, *args, **kwargs):
|
||||
"""
|
||||
Loads a prebuilt pytorch embedding from any embedding formated file.
|
||||
Padding=0 by default.
|
||||
|
||||
>>> emb = PretrainedEmbedding(embedding_path='glove.840B.300d.txt',embedding_dim=300, task_vocab={'hello': 1, 'world': 2})
|
||||
>>> data = torch.Tensor([[0, 1], [0, 2]]).long()
|
||||
>>> embedded = emb(data)
|
||||
|
||||
|
||||
|
||||
:param embedding_path:
|
||||
:param emb_dim:
|
||||
:param task_vocab:
|
||||
:param freeze:
|
||||
:return:
|
||||
"""
|
||||
# count the vocab
|
||||
self.vocab_size = max(task_vocab.values()) + 1
|
||||
super(PretrainedEmbedding, self).__init__(self.vocab_size, embedding_dim, padding_idx=0, *args, **kwargs)
|
||||
|
||||
# load pretrained embeddings
|
||||
new_emb = self.__load_task_specific_embeddings(deepcopy(task_vocab), embedding_path, embedding_dim, freeze)
|
||||
|
||||
# transfer weights
|
||||
self.weight = new_emb.weight
|
||||
|
||||
# apply freeze
|
||||
should_freeze = not freeze
|
||||
self.weight.requires_grad = should_freeze
|
||||
|
||||
def __load_task_specific_embeddings(self, vocab_words, embedding_path, emb_dim, freeze):
|
||||
"""
|
||||
Iterates embedding file to only pull out task specific embeddings
|
||||
:param vocab_words:
|
||||
:param embedding_path:
|
||||
:param emb_dim:
|
||||
:param freeze:
|
||||
:return:
|
||||
"""
|
||||
|
||||
# holds final embeddings for relevant words
|
||||
embeddings = np.zeros(shape=(self.vocab_size, emb_dim))
|
||||
|
||||
# load embedding line by line and extract relevant embeddings
|
||||
with open(embedding_path, encoding='utf-8') as f:
|
||||
for line in f:
|
||||
tokens = line.split(' ')
|
||||
word = tokens[0]
|
||||
embedding = tokens[1:]
|
||||
embedding[-1] = embedding[-1][:-1] # remove last new line
|
||||
|
||||
if word in vocab_words:
|
||||
vocab_word_i = vocab_words[word]
|
||||
|
||||
# skip words that try to overwrite pad idx
|
||||
if vocab_word_i == 0:
|
||||
del vocab_words[word]
|
||||
continue
|
||||
|
||||
emb_vals = np.asarray([float(x) for x in embedding])
|
||||
embeddings[vocab_word_i] = emb_vals
|
||||
|
||||
# remove vocab word to early terminate
|
||||
del vocab_words[word]
|
||||
|
||||
# early break
|
||||
if len(vocab_words) == 0:
|
||||
break
|
||||
|
||||
# add random vectors for the non-pretrained words
|
||||
# these are vocab words NOT found in the pretrained embeddings
|
||||
for w, i in vocab_words.items():
|
||||
# skip words that try to overwrite pad idx
|
||||
if i == 0:
|
||||
continue
|
||||
|
||||
embedding = np.random.normal(size=emb_dim)
|
||||
embeddings[i] = embedding
|
||||
|
||||
# turn into pt embedding
|
||||
embeddings = torch.FloatTensor(embeddings)
|
||||
embeddings = torch.nn.Embedding.from_pretrained(embeddings, freeze=freeze)
|
||||
|
||||
return embeddings
|
||||
|
||||
|
||||
if __name__ == '__main__':
|
||||
emb = PretrainedEmbedding(
|
||||
embedding_path='/Users/waf/Developer',
|
||||
embedding_dim=300,
|
||||
task_vocab={'hello': 1, 'world': 2}
|
||||
)
|
||||
|
||||
data = torch.Tensor([[0, 1], [0, 2]]).long()
|
||||
embedded = emb(data)
|
||||
print(embedded)
|
||||
@@ -1,28 +0,0 @@
|
||||
import numpy as np
|
||||
np.seterr(divide='ignore', invalid='ignore')
|
||||
|
||||
|
||||
def plot_confusion_matrix(cm,
|
||||
save_path,
|
||||
normalize=False,
|
||||
title='Confusion matrix',
|
||||
ylabel='y',
|
||||
xlabel='x'):
|
||||
"""
|
||||
This function prints and plots the confusion matrix.
|
||||
Normalization can be applied by setting `normalize=True`.
|
||||
"""
|
||||
from matplotlib import pyplot as plt
|
||||
if normalize:
|
||||
cm = cm.astype('float') / cm.sum(axis=1)[:, np.newaxis]
|
||||
print("Normalized confusion matrix")
|
||||
else:
|
||||
print('Confusion matrix, without normalization')
|
||||
|
||||
fig = plt.figure()
|
||||
plt.matshow(cm)
|
||||
plt.title(title)
|
||||
plt.colorbar()
|
||||
plt.ylabel(ylabel)
|
||||
plt.xlabel(xlabel)
|
||||
plt.savefig(save_path)
|
||||
+6
-32
@@ -1,35 +1,9 @@
|
||||
|
||||
atomicwrites==1.2.1
|
||||
attrs==18.2.0
|
||||
certifi==2018.11.29
|
||||
cffi==1.11.5
|
||||
imageio==2.4.1
|
||||
mkl-fft==1.0.6
|
||||
mkl-random==1.0.2
|
||||
more-itertools==5.0.0
|
||||
numpy==1.15.4
|
||||
olefile==0.46
|
||||
pandas==0.23.4
|
||||
Pillow==5.3.0
|
||||
pluggy==0.8.0
|
||||
py==1.7.0
|
||||
pycparser==2.19
|
||||
pytest==4.0.2
|
||||
python-dateutil==2.7.5
|
||||
pytz==2018.7
|
||||
coverage==4.5.3
|
||||
mkdocs==1.0.4
|
||||
pytest==5.0.1
|
||||
scikit-learn==0.20.2
|
||||
scipy==1.2.0
|
||||
six==1.12.0
|
||||
sklearn==0.0
|
||||
tensorboard==1.14.0
|
||||
tensorboardX==1.7
|
||||
tensorflow==1.14.0
|
||||
test-tube==0.643
|
||||
torch==1.0.0
|
||||
torchvision==0.2.1
|
||||
tqdm==4.32.1
|
||||
twine==1.13.0
|
||||
urllib3==1.25.3
|
||||
webencodings==0.5.1
|
||||
Werkzeug==0.15.4
|
||||
wrapt==1.11.2
|
||||
numpy==1.16.4
|
||||
torch>=1.1.0
|
||||
torchvision==0.3.0
|
||||
|
||||
@@ -16,6 +16,33 @@ markers =
|
||||
ignore = E731,W504
|
||||
max-line-length = 120
|
||||
|
||||
[coverage:report]
|
||||
exclude_lines =
|
||||
pragma: no cover
|
||||
def __repr__
|
||||
if self.debug:
|
||||
if settings.DEBUG
|
||||
raise AssertionError
|
||||
raise NotImplementedError
|
||||
if 0:
|
||||
if __name__ == .__main__.:
|
||||
except Exception as e
|
||||
print(e)
|
||||
print(traceback.print_exc())
|
||||
return *
|
||||
raise Exception
|
||||
warnings
|
||||
print
|
||||
raise RuntimeError
|
||||
break
|
||||
pass
|
||||
os.makedirs
|
||||
|
||||
omit =
|
||||
pytorch_lightning/callbacks/pt_callbacks.py
|
||||
tests/test_models.py
|
||||
pytorch_lightning/testing_models/lm_test_module.py
|
||||
|
||||
[flake8]
|
||||
ignore = E731,W504,F401,F841
|
||||
max-line-length = 120
|
||||
|
||||
@@ -7,7 +7,7 @@ from setuptools import setup, find_packages
|
||||
# http://blog.ionelmc.ro/2014/05/25/python-packaging/
|
||||
setup(
|
||||
name="pytorch-lightning",
|
||||
version='0.2.5.2',
|
||||
version='0.3.6.3',
|
||||
description="The Keras for ML researchers using PyTorch",
|
||||
author="William Falcon",
|
||||
author_email="waf2107@columbia.edu",
|
||||
@@ -19,7 +19,7 @@ setup(
|
||||
install_requires=[
|
||||
"torch>=1.1.0",
|
||||
"tqdm",
|
||||
"test-tube>=0.6.7.1",
|
||||
"test-tube>=0.6.7.4",
|
||||
],
|
||||
packages=find_packages(),
|
||||
long_description=open("README.md", encoding="utf-8").read(),
|
||||
|
||||
@@ -0,0 +1,58 @@
|
||||
# Pytorch-Lightning Tests
|
||||
|
||||
## Running tests
|
||||
The automatic travis tests ONLY run CPU-based tests. Although these cover most of the use cases,
|
||||
run on a 2-GPU machine to validate the full test-suite.
|
||||
|
||||
|
||||
To run all tests do the following:
|
||||
```bash
|
||||
git clone https://github.com/williamFalcon/pytorch-lightning
|
||||
cd pytorch-lightning
|
||||
|
||||
# install module locally
|
||||
pip install -e .
|
||||
|
||||
# install dev deps
|
||||
pip install -r requirements.txt
|
||||
|
||||
# run tests
|
||||
py.test
|
||||
```
|
||||
|
||||
To test models that require GPU make sure to run the above command on a GPU machine.
|
||||
The GPU machine must have:
|
||||
1. At least 2 GPUs.
|
||||
2. [NVIDIA-apex](https://github.com/NVIDIA/apex#linux) installed.
|
||||
|
||||
|
||||
### test_models.py
|
||||
This file fits a tiny model on MNIST using these different set-ups.
|
||||
1. CPU only.
|
||||
2. Single GPU with DP.
|
||||
3. Multiple (2) GPUs using DP.
|
||||
3. Multiple (2) GPUs using DDP.
|
||||
3. Multiple (2) GPUs using DP + apex (for 16-bit precision).
|
||||
3. Multiple (2) GPUs using DDP + apex (for 16-bit precision).
|
||||
|
||||
For each set up it also tests:
|
||||
1. model saving.
|
||||
2. model loading.
|
||||
3. predicting with a loaded model.
|
||||
4. simulated save from HPC signal.
|
||||
5. simulated load from HPC signal.
|
||||
|
||||
## Running Coverage
|
||||
|
||||
```bash
|
||||
cd pytorch-lightning
|
||||
|
||||
# generate coverage
|
||||
pip install coverage
|
||||
coverage run tests/test_models.py
|
||||
|
||||
# print coverage stats
|
||||
coverage report -m
|
||||
```
|
||||
|
||||
|
||||
+180
@@ -0,0 +1,180 @@
|
||||
import pytest
|
||||
from pytorch_lightning import Trainer
|
||||
from pytorch_lightning.examples.new_project_templates.lightning_module_template import LightningTemplateModel
|
||||
from argparse import Namespace
|
||||
from test_tube import Experiment
|
||||
from pytorch_lightning.callbacks import ModelCheckpoint
|
||||
import numpy as np
|
||||
import warnings
|
||||
import torch
|
||||
import os
|
||||
import shutil
|
||||
import pdb
|
||||
|
||||
import pytorch_lightning as ptl
|
||||
import torch
|
||||
from torch.nn import functional as F
|
||||
from torch.utils.data import DataLoader
|
||||
from torchvision.datasets import MNIST
|
||||
|
||||
|
||||
class CoolModel(ptl.LightningModule):
|
||||
|
||||
def __init(self):
|
||||
super(CoolModel, self).__init__()
|
||||
# not the best model...
|
||||
self.l1 = torch.nn.Linear(28 * 28, 10)
|
||||
|
||||
def forward(self, x):
|
||||
return torch.relu(self.l1(x))
|
||||
|
||||
def my_loss(self, y_hat, y):
|
||||
return F.cross_entropy(y_hat, y)
|
||||
|
||||
def training_step(self, batch, batch_nb):
|
||||
x, y = batch
|
||||
y_hat = self.forward(x)
|
||||
return {'tng_loss': self.my_loss(y_hat, y)}
|
||||
|
||||
def validation_step(self, batch, batch_nb):
|
||||
x, y = batch
|
||||
y_hat = self.forward(x)
|
||||
return {'val_loss': self.my_loss(y_hat, y)}
|
||||
|
||||
def validation_end(self, outputs):
|
||||
avg_loss = torch.stack([x for x in outputs['val_loss']]).mean()
|
||||
return avg_loss
|
||||
|
||||
def configure_optimizers(self):
|
||||
return [torch.optim.Adam(self.parameters(), lr=0.02)]
|
||||
|
||||
@ptl.data_loader
|
||||
def tng_dataloader(self):
|
||||
return DataLoader(MNIST('path/to/save', train=True), batch_size=32)
|
||||
|
||||
@ptl.data_loader
|
||||
def val_dataloader(self):
|
||||
return DataLoader(MNIST('path/to/save', train=False), batch_size=32)
|
||||
|
||||
@ptl.data_loader
|
||||
def test_dataloader(self):
|
||||
return DataLoader(MNIST('path/to/save', train=False), batch_size=32)
|
||||
|
||||
|
||||
def get_model():
|
||||
# set up model with these hyperparams
|
||||
root_dir = os.path.dirname(os.path.realpath(__file__))
|
||||
hparams = Namespace(**{'drop_prob': 0.2,
|
||||
'batch_size': 32,
|
||||
'in_features': 28*28,
|
||||
'learning_rate': 0.001*8,
|
||||
'optimizer_name': 'adam',
|
||||
'data_root': os.path.join(root_dir, 'mnist'),
|
||||
'out_features': 10,
|
||||
'hidden_dim': 1000})
|
||||
model = LightningTemplateModel(hparams)
|
||||
|
||||
return model, hparams
|
||||
|
||||
|
||||
def get_exp(debug=True):
|
||||
# set up exp object without actually saving logs
|
||||
root_dir = os.path.dirname(os.path.realpath(__file__))
|
||||
exp = Experiment(debug=debug, save_dir=root_dir, name='tests_tt_dir')
|
||||
return exp
|
||||
|
||||
|
||||
def init_save_dir():
|
||||
root_dir = os.path.dirname(os.path.realpath(__file__))
|
||||
save_dir = os.path.join(root_dir, 'save_dir')
|
||||
|
||||
if os.path.exists(save_dir):
|
||||
shutil.rmtree(save_dir)
|
||||
|
||||
os.makedirs(save_dir, exist_ok=True)
|
||||
|
||||
return save_dir
|
||||
|
||||
|
||||
def clear_save_dir():
|
||||
root_dir = os.path.dirname(os.path.realpath(__file__))
|
||||
save_dir = os.path.join(root_dir, 'save_dir')
|
||||
if os.path.exists(save_dir):
|
||||
shutil.rmtree(save_dir)
|
||||
|
||||
|
||||
def load_model(exp, save_dir):
|
||||
|
||||
# load trained model
|
||||
tags_path = exp.get_data_path(exp.name, exp.version)
|
||||
tags_path = os.path.join(tags_path, 'meta_tags.csv')
|
||||
|
||||
checkpoints = [x for x in os.listdir(save_dir) if '.ckpt' in x]
|
||||
weights_dir = os.path.join(save_dir, checkpoints[0])
|
||||
|
||||
trained_model = LightningTemplateModel.load_from_metrics(weights_path=weights_dir, tags_csv=tags_path, on_gpu=True)
|
||||
|
||||
assert trained_model is not None, 'loading model failed'
|
||||
|
||||
return trained_model
|
||||
|
||||
|
||||
def run_prediction(dataloader, trained_model):
|
||||
# run prediction on 1 batch
|
||||
for batch in dataloader:
|
||||
break
|
||||
|
||||
x, y = batch
|
||||
x = x.view(x.size(0), -1)
|
||||
|
||||
y_hat = trained_model(x)
|
||||
|
||||
# acc
|
||||
labels_hat = torch.argmax(y_hat, dim=1)
|
||||
val_acc = torch.sum(y == labels_hat).item() / (len(y) * 1.0)
|
||||
val_acc = torch.tensor(val_acc)
|
||||
val_acc = val_acc.item()
|
||||
|
||||
print(val_acc)
|
||||
|
||||
assert val_acc > 0.70, f'this model is expected to get > 0.7 in test set (it got {val_acc})'
|
||||
|
||||
|
||||
def main():
|
||||
|
||||
save_dir = init_save_dir()
|
||||
|
||||
# exp file to get meta
|
||||
exp = get_exp(False)
|
||||
exp.save()
|
||||
|
||||
# exp file to get weights
|
||||
checkpoint = ModelCheckpoint(save_dir)
|
||||
|
||||
trainer = Trainer(
|
||||
experiment=exp,
|
||||
checkpoint_callback=checkpoint,
|
||||
progress_bar=True,
|
||||
max_nb_epochs=1,
|
||||
gpus=[0, 1],
|
||||
distributed_backend='dp',
|
||||
)
|
||||
|
||||
model = CoolModel()
|
||||
|
||||
result = trainer.fit(model)
|
||||
|
||||
# correct result and ok accuracy
|
||||
assert result == 1, 'amp + ddp model failed to complete'
|
||||
|
||||
# test model loading
|
||||
pretrained_model = load_model(exp, save_dir)
|
||||
|
||||
# test model preds
|
||||
run_prediction(model.test_dataloader, pretrained_model)
|
||||
|
||||
clear_save_dir()
|
||||
|
||||
|
||||
if __name__ == '__main__':
|
||||
main()
|
||||
@@ -0,0 +1,688 @@
|
||||
import pytest
|
||||
from pytorch_lightning import Trainer
|
||||
from pytorch_lightning.examples.new_project_templates.lightning_module_template import LightningTemplateModel
|
||||
from pytorch_lightning.testing_models.lm_test_module import LightningTestModel
|
||||
from argparse import Namespace
|
||||
from test_tube import Experiment, SlurmCluster
|
||||
from pytorch_lightning.callbacks import ModelCheckpoint, EarlyStopping
|
||||
from pytorch_lightning.utils.debugging import MisconfigurationException
|
||||
from pytorch_lightning.root_module import memory
|
||||
from pytorch_lightning.models.trainer import reduce_distributed_output
|
||||
from pytorch_lightning.root_module import model_saving
|
||||
import numpy as np
|
||||
import warnings
|
||||
import torch
|
||||
import os
|
||||
import shutil
|
||||
import pdb
|
||||
|
||||
SEED = 2334
|
||||
torch.manual_seed(SEED)
|
||||
np.random.seed(SEED)
|
||||
|
||||
|
||||
# ------------------------------------------------------------------------
|
||||
# TESTS
|
||||
# ------------------------------------------------------------------------
|
||||
|
||||
def test_cpu_slurm_save_load():
|
||||
"""
|
||||
Verify model save/load/checkpoint on CPU
|
||||
:return:
|
||||
"""
|
||||
hparams = get_hparams()
|
||||
model = LightningTestModel(hparams)
|
||||
|
||||
save_dir = init_save_dir()
|
||||
|
||||
# exp file to get meta
|
||||
exp = get_exp(False)
|
||||
exp.argparse(hparams)
|
||||
exp.save()
|
||||
|
||||
cluster_a = SlurmCluster()
|
||||
trainer_options = dict(
|
||||
max_nb_epochs=1,
|
||||
cluster=cluster_a,
|
||||
experiment=exp,
|
||||
checkpoint_callback=ModelCheckpoint(save_dir)
|
||||
)
|
||||
|
||||
# fit model
|
||||
trainer = Trainer(**trainer_options)
|
||||
result = trainer.fit(model)
|
||||
real_global_step = trainer.global_step
|
||||
|
||||
# traning complete
|
||||
assert result == 1, 'amp + ddp model failed to complete'
|
||||
|
||||
# predict with trained model before saving
|
||||
# make a prediction
|
||||
for batch in model.test_dataloader:
|
||||
break
|
||||
|
||||
x, y = batch
|
||||
x = x.view(x.size(0), -1)
|
||||
|
||||
model.eval()
|
||||
pred_before_saving = model(x)
|
||||
|
||||
# test registering a save function
|
||||
trainer.enable_auto_hpc_walltime_manager()
|
||||
|
||||
# test HPC saving
|
||||
# simulate snapshot on slurm
|
||||
saved_filepath = trainer.hpc_save(save_dir, exp)
|
||||
assert os.path.exists(saved_filepath)
|
||||
|
||||
# wipe-out trainer and model
|
||||
# retrain with not much data... this simulates picking training back up after slurm
|
||||
# we want to see if the weights come back correctly
|
||||
continue_tng_hparams = get_hparams(continue_training=True, hpc_exp_number=cluster_a.hpc_exp_number)
|
||||
trainer_options = dict(
|
||||
max_nb_epochs=1,
|
||||
cluster=SlurmCluster(continue_tng_hparams),
|
||||
experiment=exp,
|
||||
checkpoint_callback=ModelCheckpoint(save_dir),
|
||||
)
|
||||
trainer = Trainer(**trainer_options)
|
||||
model = LightningTestModel(hparams)
|
||||
|
||||
# set the epoch start hook so we can predict before the model does the full training
|
||||
def assert_pred_same():
|
||||
assert trainer.global_step == real_global_step and trainer.global_step > 0
|
||||
|
||||
# predict with loaded model to make sure answers are the same
|
||||
trainer.model.eval()
|
||||
new_pred = trainer.model(x)
|
||||
assert torch.all(torch.eq(pred_before_saving, new_pred)).item() == 1
|
||||
|
||||
model.on_epoch_start = assert_pred_same
|
||||
|
||||
# by calling fit again, we trigger training, loading weights from the cluster
|
||||
# and our hook to predict using current model before any more weight updates
|
||||
trainer.fit(model)
|
||||
|
||||
clear_save_dir()
|
||||
|
||||
|
||||
def test_loading_meta_tags():
|
||||
hparams = get_hparams()
|
||||
|
||||
save_dir = init_save_dir()
|
||||
|
||||
# save tags
|
||||
exp = get_exp(False)
|
||||
exp.tag({'some_str':'a_str', 'an_int': 1, 'a_float': 2.0})
|
||||
exp.argparse(hparams)
|
||||
exp.save()
|
||||
|
||||
# load tags
|
||||
tags_path = exp.get_data_path(exp.name, exp.version) + '/meta_tags.csv'
|
||||
tags = model_saving.load_hparams_from_tags_csv(tags_path)
|
||||
|
||||
assert tags.batch_size == 32 and tags.hidden_dim == 1000
|
||||
|
||||
clear_save_dir()
|
||||
|
||||
|
||||
def test_dp_output_reduce():
|
||||
|
||||
# test identity when we have a single gpu
|
||||
out = torch.rand(3, 1)
|
||||
assert reduce_distributed_output(out, nb_gpus=1) is out
|
||||
|
||||
# average when we have multiples
|
||||
assert reduce_distributed_output(out, nb_gpus=2) == out.mean()
|
||||
|
||||
# when we have a dict of vals
|
||||
out = {
|
||||
'a': out,
|
||||
'b': {
|
||||
'c': out
|
||||
}
|
||||
}
|
||||
reduced = reduce_distributed_output(out, nb_gpus=3)
|
||||
assert reduced['a'] == out['a']
|
||||
assert reduced['b']['c'] == out['b']['c']
|
||||
|
||||
|
||||
def test_model_saving_loading():
|
||||
"""
|
||||
Tests use case where trainer saves the model, and user loads it from tags independently
|
||||
:return:
|
||||
"""
|
||||
hparams = get_hparams()
|
||||
model = LightningTestModel(hparams)
|
||||
|
||||
save_dir = init_save_dir()
|
||||
|
||||
# exp file to get meta
|
||||
exp = get_exp(False)
|
||||
exp.argparse(hparams)
|
||||
exp.save()
|
||||
|
||||
trainer_options = dict(
|
||||
max_nb_epochs=1,
|
||||
cluster=SlurmCluster(),
|
||||
experiment=exp,
|
||||
checkpoint_callback=ModelCheckpoint(save_dir)
|
||||
)
|
||||
|
||||
# fit model
|
||||
trainer = Trainer(**trainer_options)
|
||||
result = trainer.fit(model)
|
||||
|
||||
# traning complete
|
||||
assert result == 1, 'amp + ddp model failed to complete'
|
||||
|
||||
# make a prediction
|
||||
for batch in model.test_dataloader:
|
||||
break
|
||||
|
||||
x, y = batch
|
||||
x = x.view(x.size(0), -1)
|
||||
|
||||
# generate preds before saving model
|
||||
model.eval()
|
||||
pred_before_saving = model(x)
|
||||
|
||||
# save model
|
||||
new_weights_path = os.path.join(save_dir, 'save_test.ckpt')
|
||||
trainer.save_checkpoint(new_weights_path)
|
||||
|
||||
# load new model
|
||||
tags_path = exp.get_data_path(exp.name, exp.version)
|
||||
tags_path = os.path.join(tags_path, 'meta_tags.csv')
|
||||
model_2 = LightningTestModel.load_from_metrics(weights_path=new_weights_path, tags_csv=tags_path, on_gpu=False)
|
||||
model_2.eval()
|
||||
|
||||
# make prediction
|
||||
# assert that both predictions are the same
|
||||
new_pred = model_2(x)
|
||||
assert torch.all(torch.eq(pred_before_saving, new_pred)).item() == 1
|
||||
|
||||
clear_save_dir()
|
||||
|
||||
|
||||
|
||||
|
||||
def test_model_freeze_unfreeze():
|
||||
hparams = get_hparams()
|
||||
model = LightningTestModel(hparams)
|
||||
|
||||
model.freeze()
|
||||
model.unfreeze()
|
||||
|
||||
|
||||
def test_amp_gpu_ddp_slurm_managed():
|
||||
"""
|
||||
Make sure DDP + AMP work
|
||||
:return:
|
||||
"""
|
||||
if not torch.cuda.is_available():
|
||||
warnings.warn('test_amp_gpu_ddp cannot run. Rerun on a GPU node to run this test')
|
||||
return
|
||||
if not torch.cuda.device_count() > 1:
|
||||
warnings.warn('test_amp_gpu_ddp cannot run. Rerun on a node with 2+ GPUs to run this test')
|
||||
return
|
||||
|
||||
# simulate setting slurm flags
|
||||
os.environ['MASTER_PORT'] = str(np.random.randint(12000, 19000, 1)[0])
|
||||
os.environ['SLURM_LOCALID'] = str(0)
|
||||
|
||||
hparams = get_hparams()
|
||||
model = LightningTestModel(hparams)
|
||||
|
||||
trainer_options = dict(
|
||||
progress_bar=True,
|
||||
max_nb_epochs=1,
|
||||
gpus=[0],
|
||||
distributed_backend='ddp',
|
||||
use_amp=True
|
||||
)
|
||||
|
||||
save_dir = init_save_dir()
|
||||
|
||||
# exp file to get meta
|
||||
exp = get_exp(False)
|
||||
exp.argparse(hparams)
|
||||
exp.save()
|
||||
|
||||
# exp file to get weights
|
||||
checkpoint = ModelCheckpoint(save_dir)
|
||||
|
||||
# add these to the trainer options
|
||||
trainer_options['checkpoint_callback'] = checkpoint
|
||||
trainer_options['experiment'] = exp
|
||||
|
||||
# fit model
|
||||
trainer = Trainer(**trainer_options)
|
||||
trainer.is_slurm_managing_tasks = True
|
||||
result = trainer.fit(model)
|
||||
|
||||
# correct result and ok accuracy
|
||||
assert result == 1, 'amp + ddp model failed to complete'
|
||||
|
||||
# test root model address
|
||||
assert trainer.resolve_root_node_address('abc') == 'abc'
|
||||
assert trainer.resolve_root_node_address('abc[23]') == 'abc23'
|
||||
assert trainer.resolve_root_node_address('abc[23-24]') == 'abc23'
|
||||
assert trainer.resolve_root_node_address('abc[23-24, 45-40, 40]') == 'abc23'
|
||||
|
||||
# test model loading with a map_location
|
||||
map_location = 'cuda:1'
|
||||
pretrained_model = load_model(exp, save_dir, True, map_location)
|
||||
|
||||
# test model preds
|
||||
run_prediction(model.test_dataloader, pretrained_model)
|
||||
|
||||
if trainer.use_ddp:
|
||||
# on hpc this would work fine... but need to hack it for the purpose of the test
|
||||
trainer.model = pretrained_model
|
||||
trainer.optimizers = pretrained_model.configure_optimizers()
|
||||
|
||||
# test HPC loading / saving
|
||||
trainer.hpc_save(save_dir, exp)
|
||||
trainer.hpc_load(save_dir, on_gpu=True)
|
||||
|
||||
# test freeze on gpu
|
||||
model.freeze()
|
||||
model.unfreeze()
|
||||
|
||||
clear_save_dir()
|
||||
|
||||
|
||||
def test_early_stopping_cpu_model():
|
||||
"""
|
||||
Test each of the trainer options
|
||||
:return:
|
||||
"""
|
||||
|
||||
stopping = EarlyStopping()
|
||||
trainer_options = dict(
|
||||
early_stop_callback=stopping,
|
||||
gradient_clip=1.0,
|
||||
overfit_pct=0.20,
|
||||
track_grad_norm=2,
|
||||
print_nan_grads=True,
|
||||
progress_bar=False,
|
||||
experiment=get_exp(),
|
||||
train_percent_check=0.1,
|
||||
val_percent_check=0.1
|
||||
)
|
||||
|
||||
model, hparams = get_model()
|
||||
run_gpu_model_test(trainer_options, model, hparams, on_gpu=False)
|
||||
|
||||
# test freeze on cpu
|
||||
model.freeze()
|
||||
model.unfreeze()
|
||||
|
||||
|
||||
def test_cpu_model_with_amp():
|
||||
"""
|
||||
Make sure model trains on CPU
|
||||
:return:
|
||||
"""
|
||||
|
||||
trainer_options = dict(
|
||||
progress_bar=False,
|
||||
experiment=get_exp(),
|
||||
max_nb_epochs=1,
|
||||
train_percent_check=0.4,
|
||||
val_percent_check=0.4,
|
||||
use_amp=True
|
||||
)
|
||||
|
||||
model, hparams = get_model()
|
||||
|
||||
with pytest.raises((MisconfigurationException, ModuleNotFoundError)):
|
||||
run_gpu_model_test(trainer_options, model, hparams, on_gpu=False)
|
||||
|
||||
|
||||
def test_cpu_model():
|
||||
"""
|
||||
Make sure model trains on CPU
|
||||
:return:
|
||||
"""
|
||||
|
||||
trainer_options = dict(
|
||||
progress_bar=False,
|
||||
experiment=get_exp(),
|
||||
max_nb_epochs=1,
|
||||
train_percent_check=0.4,
|
||||
val_percent_check=0.4
|
||||
)
|
||||
|
||||
model, hparams = get_model()
|
||||
|
||||
run_gpu_model_test(trainer_options, model, hparams, on_gpu=False)
|
||||
|
||||
|
||||
def test_all_features_cpu_model():
|
||||
"""
|
||||
Test each of the trainer options
|
||||
:return:
|
||||
"""
|
||||
|
||||
trainer_options = dict(
|
||||
gradient_clip=1.0,
|
||||
overfit_pct=0.20,
|
||||
track_grad_norm=2,
|
||||
print_nan_grads=True,
|
||||
progress_bar=False,
|
||||
experiment=get_exp(),
|
||||
max_nb_epochs=1,
|
||||
train_percent_check=0.4,
|
||||
val_percent_check=0.4
|
||||
)
|
||||
|
||||
model, hparams = get_model()
|
||||
run_gpu_model_test(trainer_options, model, hparams, on_gpu=False)
|
||||
|
||||
|
||||
def test_single_gpu_model():
|
||||
"""
|
||||
Make sure single GPU works (DP mode)
|
||||
:return:
|
||||
"""
|
||||
if not torch.cuda.is_available():
|
||||
warnings.warn('test_single_gpu_model cannot run. Rerun on a GPU node to run this test')
|
||||
return
|
||||
model, hparams = get_model()
|
||||
|
||||
trainer_options = dict(
|
||||
progress_bar=False,
|
||||
max_nb_epochs=1,
|
||||
train_percent_check=0.1,
|
||||
val_percent_check=0.1,
|
||||
gpus=[0]
|
||||
)
|
||||
|
||||
run_gpu_model_test(trainer_options, model, hparams)
|
||||
|
||||
|
||||
def test_multi_gpu_model_dp():
|
||||
"""
|
||||
Make sure DP works
|
||||
:return:
|
||||
"""
|
||||
if not torch.cuda.is_available():
|
||||
warnings.warn('test_multi_gpu_model_dp cannot run. Rerun on a GPU node to run this test')
|
||||
return
|
||||
if not torch.cuda.device_count() > 1:
|
||||
warnings.warn('test_multi_gpu_model_dp cannot run. Rerun on a node with 2+ GPUs to run this test')
|
||||
return
|
||||
model, hparams = get_model()
|
||||
trainer_options = dict(
|
||||
progress_bar=False,
|
||||
max_nb_epochs=1,
|
||||
train_percent_check=0.1,
|
||||
val_percent_check=0.1,
|
||||
gpus='-1'
|
||||
)
|
||||
|
||||
run_gpu_model_test(trainer_options, model, hparams)
|
||||
|
||||
# test memory helper functions
|
||||
memory.get_gpu_memory_map()
|
||||
|
||||
|
||||
def test_amp_gpu_dp():
|
||||
"""
|
||||
Make sure DP + AMP work
|
||||
:return:
|
||||
"""
|
||||
if not torch.cuda.is_available():
|
||||
warnings.warn('test_amp_gpu_dp cannot run. Rerun on a GPU node to run this test')
|
||||
return
|
||||
if not torch.cuda.device_count() > 1:
|
||||
warnings.warn('test_amp_gpu_dp cannot run. Rerun on a node with 2+ GPUs to run this test')
|
||||
return
|
||||
model, hparams = get_model()
|
||||
trainer_options = dict(
|
||||
max_nb_epochs=1,
|
||||
gpus='0, 1', # test init with gpu string
|
||||
distributed_backend='dp',
|
||||
use_amp=True
|
||||
)
|
||||
with pytest.raises(MisconfigurationException):
|
||||
run_gpu_model_test(trainer_options, model, hparams)
|
||||
|
||||
|
||||
def test_multi_gpu_model_ddp():
|
||||
"""
|
||||
Make sure DDP works
|
||||
:return:
|
||||
"""
|
||||
if not torch.cuda.is_available():
|
||||
warnings.warn('test_multi_gpu_model_ddp cannot run. Rerun on a GPU node to run this test')
|
||||
return
|
||||
if not torch.cuda.device_count() > 1:
|
||||
warnings.warn('test_multi_gpu_model_ddp cannot run. Rerun on a node with 2+ GPUs to run this test')
|
||||
return
|
||||
|
||||
os.environ['MASTER_PORT'] = str(np.random.randint(12000, 19000, 1)[0])
|
||||
model, hparams = get_model()
|
||||
trainer_options = dict(
|
||||
progress_bar=False,
|
||||
max_nb_epochs=1,
|
||||
train_percent_check=0.4,
|
||||
val_percent_check=0.2,
|
||||
gpus=[0, 1],
|
||||
distributed_backend='ddp'
|
||||
)
|
||||
|
||||
run_gpu_model_test(trainer_options, model, hparams)
|
||||
|
||||
|
||||
def test_amp_gpu_ddp():
|
||||
"""
|
||||
Make sure DDP + AMP work
|
||||
:return:
|
||||
"""
|
||||
if not torch.cuda.is_available():
|
||||
warnings.warn('test_amp_gpu_ddp cannot run. Rerun on a GPU node to run this test')
|
||||
return
|
||||
if not torch.cuda.device_count() > 1:
|
||||
warnings.warn('test_amp_gpu_ddp cannot run. Rerun on a node with 2+ GPUs to run this test')
|
||||
return
|
||||
|
||||
os.environ['MASTER_PORT'] = str(np.random.randint(12000, 19000, 1)[0])
|
||||
|
||||
hparams = get_hparams()
|
||||
model = LightningTestModel(hparams)
|
||||
|
||||
trainer_options = dict(
|
||||
progress_bar=True,
|
||||
max_nb_epochs=1,
|
||||
gpus=[0, 1],
|
||||
distributed_backend='ddp',
|
||||
use_amp=True
|
||||
)
|
||||
|
||||
run_gpu_model_test(trainer_options, model, hparams)
|
||||
|
||||
|
||||
def test_ddp_sampler_error():
|
||||
"""
|
||||
Make sure DDP + AMP work
|
||||
:return:
|
||||
"""
|
||||
if not torch.cuda.is_available():
|
||||
warnings.warn('test_amp_gpu_ddp cannot run. Rerun on a GPU node to run this test')
|
||||
return
|
||||
if not torch.cuda.device_count() > 1:
|
||||
warnings.warn('test_amp_gpu_ddp cannot run. Rerun on a node with 2+ GPUs to run this test')
|
||||
return
|
||||
|
||||
os.environ['MASTER_PORT'] = str(np.random.randint(12000, 19000, 1)[0])
|
||||
|
||||
hparams = get_hparams()
|
||||
model = LightningTestModel(hparams, force_remove_distributed_sampler=True)
|
||||
|
||||
exp = get_exp(True)
|
||||
exp.save()
|
||||
|
||||
trainer = Trainer(
|
||||
experiment=exp,
|
||||
progress_bar=False,
|
||||
max_nb_epochs=1,
|
||||
gpus=[0, 1],
|
||||
distributed_backend='ddp',
|
||||
use_amp=True
|
||||
)
|
||||
|
||||
with pytest.raises(MisconfigurationException):
|
||||
trainer.get_dataloaders(model)
|
||||
|
||||
clear_save_dir()
|
||||
|
||||
|
||||
# ------------------------------------------------------------------------
|
||||
# UTILS
|
||||
# ------------------------------------------------------------------------
|
||||
def run_gpu_model_test(trainer_options, model, hparams, on_gpu=True):
|
||||
save_dir = init_save_dir()
|
||||
|
||||
# exp file to get meta
|
||||
exp = get_exp(False)
|
||||
exp.argparse(hparams)
|
||||
exp.save()
|
||||
|
||||
# exp file to get weights
|
||||
checkpoint = ModelCheckpoint(save_dir)
|
||||
|
||||
# add these to the trainer options
|
||||
trainer_options['checkpoint_callback'] = checkpoint
|
||||
trainer_options['experiment'] = exp
|
||||
|
||||
# fit model
|
||||
trainer = Trainer(**trainer_options)
|
||||
result = trainer.fit(model)
|
||||
|
||||
# correct result and ok accuracy
|
||||
assert result == 1, 'amp + ddp model failed to complete'
|
||||
|
||||
# test model loading
|
||||
pretrained_model = load_model(exp, save_dir, on_gpu)
|
||||
|
||||
# test model preds
|
||||
run_prediction(model.test_dataloader, pretrained_model)
|
||||
|
||||
if trainer.use_ddp:
|
||||
# on hpc this would work fine... but need to hack it for the purpose of the test
|
||||
trainer.model = pretrained_model
|
||||
trainer.optimizers = pretrained_model.configure_optimizers()
|
||||
|
||||
# test HPC loading / saving
|
||||
trainer.hpc_save(save_dir, exp)
|
||||
trainer.hpc_load(save_dir, on_gpu=on_gpu)
|
||||
|
||||
clear_save_dir()
|
||||
|
||||
|
||||
def get_hparams(continue_training=False, hpc_exp_number=0):
|
||||
root_dir = os.path.dirname(os.path.realpath(__file__))
|
||||
|
||||
args = {
|
||||
'drop_prob': 0.2,
|
||||
'batch_size': 32,
|
||||
'in_features': 28*28,
|
||||
'learning_rate': 0.001*8,
|
||||
'optimizer_name': 'adam',
|
||||
'data_root': os.path.join(root_dir, 'mnist'),
|
||||
'out_features': 10,
|
||||
'hidden_dim': 1000}
|
||||
|
||||
if continue_training:
|
||||
args['test_tube_do_checkpoint_load'] = True
|
||||
args['hpc_exp_number'] = hpc_exp_number
|
||||
|
||||
hparams = Namespace(**args)
|
||||
return hparams
|
||||
|
||||
|
||||
def get_model():
|
||||
# set up model with these hyperparams
|
||||
hparams = get_hparams()
|
||||
model = LightningTemplateModel(hparams)
|
||||
|
||||
return model, hparams
|
||||
|
||||
|
||||
def get_exp(debug=True):
|
||||
# set up exp object without actually saving logs
|
||||
root_dir = os.path.dirname(os.path.realpath(__file__))
|
||||
exp = Experiment(debug=debug, save_dir=root_dir, name='tests_tt_dir')
|
||||
return exp
|
||||
|
||||
|
||||
def init_save_dir():
|
||||
root_dir = os.path.dirname(os.path.realpath(__file__))
|
||||
save_dir = os.path.join(root_dir, 'save_dir')
|
||||
|
||||
if os.path.exists(save_dir):
|
||||
shutil.rmtree(save_dir)
|
||||
|
||||
os.makedirs(save_dir, exist_ok=True)
|
||||
|
||||
return save_dir
|
||||
|
||||
|
||||
def clear_save_dir():
|
||||
root_dir = os.path.dirname(os.path.realpath(__file__))
|
||||
save_dir = os.path.join(root_dir, 'save_dir')
|
||||
if os.path.exists(save_dir):
|
||||
shutil.rmtree(save_dir)
|
||||
|
||||
|
||||
def load_model(exp, save_dir, on_gpu, map_location=None):
|
||||
|
||||
# load trained model
|
||||
tags_path = exp.get_data_path(exp.name, exp.version)
|
||||
tags_path = os.path.join(tags_path, 'meta_tags.csv')
|
||||
|
||||
checkpoints = [x for x in os.listdir(save_dir) if '.ckpt' in x]
|
||||
weights_dir = os.path.join(save_dir, checkpoints[0])
|
||||
|
||||
trained_model = LightningTemplateModel.load_from_metrics(weights_path=weights_dir,
|
||||
tags_csv=tags_path,
|
||||
on_gpu=on_gpu,
|
||||
map_location=map_location)
|
||||
|
||||
assert trained_model is not None, 'loading model failed'
|
||||
|
||||
return trained_model
|
||||
|
||||
|
||||
def run_prediction(dataloader, trained_model):
|
||||
# run prediction on 1 batch
|
||||
for batch in dataloader:
|
||||
break
|
||||
|
||||
x, y = batch
|
||||
x = x.view(x.size(0), -1)
|
||||
|
||||
y_hat = trained_model(x)
|
||||
|
||||
# acc
|
||||
labels_hat = torch.argmax(y_hat, dim=1)
|
||||
val_acc = torch.sum(y == labels_hat).item() / (len(y) * 1.0)
|
||||
val_acc = torch.tensor(val_acc)
|
||||
val_acc = val_acc.item()
|
||||
|
||||
print(val_acc)
|
||||
|
||||
assert val_acc > 0.50, f'this model is expected to get > 0.50 in test set (it got {val_acc})'
|
||||
|
||||
|
||||
def assert_ok_acc(trainer):
|
||||
# this model should get 0.80+ acc
|
||||
acc = trainer.tng_tqdm_dic['val_acc']
|
||||
assert acc > 0.50, f'model failed to get expected 0.50 validation accuracy. Got: {acc}'
|
||||
|
||||
|
||||
if __name__ == '__main__':
|
||||
pytest.main([__file__])
|
||||
Reference in New Issue
Block a user