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346 Commits
Author SHA1 Message Date
William Falcon 7dd22f82c6 release v0.3.6.4 2019-07-27 13:42:41 -04:00
William Falcon a3bd66167b Update trainer.py 2019-07-27 13:41:38 -04:00
William Falcon 0ce180f6ec updated docs 2019-07-26 23:23:56 -04:00
William Falcon 8e7d3c6737 added clean slurm save load test 2019-07-26 23:16:03 -04:00
William Falcon 4cacb5a21b release v0.3.6.3 2019-07-26 23:09:49 -04:00
William Falcon 60e60fcd8b added clean slurm save load test 2019-07-26 23:09:27 -04:00
William Falcon cf898a6ecf Merge pull request #22 from williamFalcon/loading
Loading
2019-07-26 23:08:17 -04:00
William Falcon 587c195298 added clean slurm save load test 2019-07-26 23:04:41 -04:00
William Falcon 64586f271d added clean slurm save load test 2019-07-26 23:02:18 -04:00
William Falcon 53b781709e added clean slurm save load test 2019-07-26 22:57:49 -04:00
William Falcon f183ac2a1c added clean slurm save load test 2019-07-26 22:51:33 -04:00
William Falcon 61c82611eb added clean slurm save load test 2019-07-26 22:40:07 -04:00
William Falcon 3224365190 added clean slurm save load test 2019-07-26 22:39:44 -04:00
William Falcon 2a4081e537 added clean slurm save load test 2019-07-26 22:33:31 -04:00
William Falcon 8e3a0443c7 added clean slurm save load test 2019-07-26 22:33:00 -04:00
William Falcon f5a01edfb8 added clean slurm save load test 2019-07-26 22:32:34 -04:00
William Falcon f1de62671d added clean slurm save load test 2019-07-26 22:32:27 -04:00
William Falcon 57edb08bd8 added clean slurm save load test 2019-07-26 22:28:09 -04:00
William Falcon ffa7a0dbab added clean slurm save load test 2019-07-26 22:26:55 -04:00
William Falcon b5419fcd8b added clean slurm save load test 2019-07-26 22:24:01 -04:00
William Falcon c61e13f0ff fixed hpc save, load. cleaned apu 2019-07-26 22:13:41 -04:00
William Falcon a6ae97ac09 fixed hpc save, load. cleaned apu 2019-07-26 22:13:06 -04:00
William Falcon 348223a702 fixed hpc save, load. cleaned apu 2019-07-26 22:09:35 -04:00
William Falcon 64de447545 fixed hpc save, load. cleaned apu 2019-07-26 22:07:02 -04:00
William Falcon 265411572f fixed hpc save, load. cleaned apu 2019-07-26 22:04:27 -04:00
William Falcon 4148c36abd added model save load test 2019-07-26 21:55:01 -04:00
William Falcon 0ee0344820 removed old template 2019-07-26 21:39:53 -04:00
William Falcon a5a80f35ec removed old template 2019-07-26 21:39:28 -04:00
William Falcon 92a1f559b5 remove state_dict 2019-07-26 21:39:01 -04:00
William Falcon aacf1947ea auto state-dict and remove the way the model is loaded during hpc 2019-07-26 21:38:06 -04:00
William Falcon e2c7fa44b7 auto state-dict and remove the way the model is loaded during hpc 2019-07-26 21:37:06 -04:00
William Falcon ff1ed9db7e release v0.3.6.1 2019-07-26 19:11:32 -04:00
William Falcon baf2ccefea Merge pull request #21 from williamFalcon/r
R
2019-07-26 19:10:48 -04:00
William Falcon df37c8418a updated test-tube dep number 2019-07-26 18:57:18 -04:00
William Falcon d6bfb94215 added global rank var name 2019-07-26 18:52:38 -04:00
William Falcon 12f717ad4a added global rank var name 2019-07-26 18:52:02 -04:00
William Falcon 56d41eaa8c Merge pull request #20 from williamFalcon/test2
Test2
2019-07-26 12:47:13 -04:00
William Falcon 84edf35f33 added saving tests to cpu 2019-07-26 12:35:28 -04:00
William Falcon a374a7ea00 added saving tests to cpu 2019-07-26 12:33:35 -04:00
William Falcon fbc1bbd161 added saving tests to cpu 2019-07-26 12:31:26 -04:00
William Falcon 84f03a1335 added saving tests to cpu 2019-07-26 12:29:19 -04:00
William Falcon 1a835969a6 added saving tests to cpu 2019-07-26 12:14:58 -04:00
William Falcon 2ee8f157ce added checkpoint test on cpu 2019-07-26 11:51:25 -04:00
William Falcon 51a5cc36e3 added checkpoint test on cpu 2019-07-26 11:50:02 -04:00
William Falcon c4b37d1efe updated readme 2019-07-25 20:13:22 -04:00
William Falcon 0489ed1e89 updated readme 2019-07-25 19:55:22 -04:00
William Falcon 677edc46d8 removed exception crashing from val 2019-07-25 19:49:45 -04:00
William Falcon 7e52f6ea97 cleaned up some if statements 2019-07-25 17:14:33 -04:00
William Falcon 7e728d97e7 removed save model logging 2019-07-25 14:36:22 -04:00
William Falcon 08bf9e16ae updated docs 2019-07-25 12:46:11 -04:00
William Falcon 7166b1acbc updated docs 2019-07-25 12:44:48 -04:00
William Falcon d18f38c0d7 updated docs 2019-07-25 12:40:09 -04:00
William Falcon f844f110af updated docs 2019-07-25 12:37:59 -04:00
William Falcon 1cbe54f8ba updated docs 2019-07-25 12:35:28 -04:00
William Falcon 79a79fb27d updated examples 2019-07-25 12:33:53 -04:00
William Falcon b1cd5d9d31 updated examples 2019-07-25 12:30:59 -04:00
William Falcon 6bd58de40e updated examples 2019-07-25 12:30:18 -04:00
William Falcon a1dd4d3e2c release v0.3.6 2019-07-25 12:22:50 -04:00
William Falcon b914866131 updated docs 2019-07-25 12:12:45 -04:00
William Falcon e182559c83 updated docs 2019-07-25 12:11:49 -04:00
William Falcon 9b99a02061 removed hparams req 2019-07-25 12:09:09 -04:00
William Falcon 20227b1382 removed hparams req 2019-07-25 12:08:00 -04:00
William Falcon d0d5653b06 removed hparams req 2019-07-25 12:04:20 -04:00
William Falcon b0d38d532d updated docs 2019-07-25 12:01:52 -04:00
William Falcon 4562580461 updated docs 2019-07-25 11:58:06 -04:00
William Falcon d272f29c88 updated docs 2019-07-25 11:52:54 -04:00
William Falcon 600c755460 updated docs 2019-07-25 11:44:25 -04:00
William Falcon d09a9e2c96 release v0.3.51 2019-07-25 11:38:57 -04:00
William Falcon 0f79e9d74e updated docs 2019-07-25 11:35:11 -04:00
William Falcon 9fa8120805 updated docs 2019-07-25 11:30:17 -04:00
William Falcon 715bf23105 updated docs 2019-07-25 11:28:34 -04:00
William Falcon 88ac4a0849 testing multiple calles 2019-07-25 11:19:58 -04:00
William Falcon 383746b87a testing multiple calles 2019-07-25 11:19:20 -04:00
William Falcon fffc09830f switched cpu amp order 2019-07-25 11:11:14 -04:00
William Falcon aadf8e16aa switched cpu amp order 2019-07-25 11:10:21 -04:00
William Falcon 4b04dc06d4 switched cpu amp order 2019-07-25 11:08:31 -04:00
William Falcon 0e42d28415 fixed root node addr 2019-07-25 11:05:15 -04:00
William Falcon 09dba13cde updated test models with lazy decorators 2019-07-25 11:01:08 -04:00
William Falcon 42a45bb273 updated test models with lazy decorators 2019-07-25 11:00:35 -04:00
William Falcon 5604e955eb updated test models with lazy decorators 2019-07-25 10:59:10 -04:00
William Falcon 6d34224e68 updated test models with lazy decorators 2019-07-25 10:56:42 -04:00
William Falcon 24a3246bc1 updated test models with lazy decorators 2019-07-25 10:56:03 -04:00
William Falcon 39b15855ed added lazy decorator 2019-07-25 10:39:48 -04:00
William Falcon c6da6eb46c updated readme 2019-07-25 10:33:35 -04:00
William Falcon d23d25646a cleaned readme 2019-07-25 10:26:47 -04:00
William Falcon bd6521a584 cleaned readme 2019-07-25 10:25:41 -04:00
William Falcon 2ce3e3e108 cleaned readme 2019-07-25 10:25:12 -04:00
William Falcon deeb82d28f cleaned readme 2019-07-25 10:23:51 -04:00
William Falcon 74817c2fb1 cleaned readme 2019-07-25 10:11:51 -04:00
William Falcon b989358c9b added downloads badge 2019-07-25 09:55:50 -04:00
William Falcon 0d47561a31 added downloads badge 2019-07-25 09:55:30 -04:00
William Falcon b8c7baa8ac release v0.3.5 2019-07-24 22:08:02 -04:00
William Falcon caf874538c added init to test folder 2019-07-24 22:00:00 -04:00
William Falcon ff0459df60 added init to test folder 2019-07-24 21:56:38 -04:00
William Falcon 6e0b2af827 added init to test folder 2019-07-24 21:51:17 -04:00
William Falcon 204a81a10e added init to test folder 2019-07-24 21:50:27 -04:00
William Falcon 2ddf51bf3e added init to test folder 2019-07-24 21:44:46 -04:00
William Falcon a680ad1540 added init to test folder 2019-07-24 21:40:19 -04:00
William Falcon 735df77862 added init to test folder 2019-07-24 21:35:38 -04:00
William Falcon 9856520c0c added init to test folder 2019-07-24 21:32:31 -04:00
William Falcon a186cf12dc added instructions to test 2019-07-24 21:31:43 -04:00
William Falcon 104b4dc1ff removed deps 2019-07-24 21:28:34 -04:00
William Falcon 9b44ed1c3f removed deps 2019-07-24 21:22:24 -04:00
William Falcon 2ca0166a0d removed deps 2019-07-24 21:19:26 -04:00
William Falcon 9fa8293e7a Update README.md 2019-07-24 21:15:17 -04:00
William Falcon 55648311ba Update README.md 2019-07-24 21:14:43 -04:00
William Falcon 39ed4472c2 removed dep 2019-07-24 21:13:00 -04:00
William Falcon 9d6311c69b added travis 2019-07-24 21:09:36 -04:00
William Falcon 497ec95f55 added mkdocs config 2019-07-24 21:04:46 -04:00
William Falcon b75129dde4 added mkdocs config 2019-07-24 21:04:20 -04:00
William Falcon 91bc8cbc02 added mkdocs config 2019-07-24 21:03:24 -04:00
William Falcon 135b826ebb removed dep 2019-07-24 20:56:43 -04:00
William Falcon 24c07bdff3 removed dep 2019-07-24 20:56:09 -04:00
William Falcon 3ebf3bbcfd removed dep 2019-07-24 20:55:16 -04:00
William Falcon 097a9d2617 Merge pull request #18 from williamFalcon/tests
removed dep
2019-07-24 20:54:42 -04:00
William Falcon afb5d0e638 removed dep 2019-07-24 20:52:53 -04:00
William Falcon 303ab0ca9b Update README.md 2019-07-24 20:52:08 -04:00
William Falcon d118b774fb Update README.md 2019-07-24 20:48:19 -04:00
William Falcon e060c2008f Update README.md 2019-07-24 20:46:33 -04:00
William Falcon 17f2d376ed Update README.md 2019-07-24 20:45:59 -04:00
William Falcon 2d3ab895a5 Merge pull request #17 from williamFalcon/tests
added coverage badge
2019-07-24 20:41:57 -04:00
William Falcon c263badbb5 Merge pull request #16 from williamFalcon/tests
Tests
2019-07-24 20:41:12 -04:00
williamFalcon 3ccfb2a858 added coverage badge 2019-07-24 17:39:20 -07:00
William Falcon 63a4af3ba7 added testing for metrics 2019-07-24 20:33:31 -04:00
William Falcon 23e7521300 added dp reduce out test 2019-07-24 20:22:54 -04:00
William Falcon d6e7994922 added dp reduce out test 2019-07-24 20:21:57 -04:00
William Falcon 37a26741cc testing map location 2019-07-24 20:08:17 -04:00
William Falcon c72a189c54 dp doesnt support amp with any setting 2019-07-24 19:48:48 -04:00
William Falcon a4bb80b936 dp doesnt support amp with any setting 2019-07-24 19:43:38 -04:00
William Falcon 5a1b3d17d2 pt dpp some ignores 2019-07-24 19:39:18 -04:00
William Falcon 1361d37598 pt dpp some ignores 2019-07-24 19:37:04 -04:00
William Falcon 8391b744c0 pt dpp some ignores 2019-07-24 19:36:35 -04:00
William Falcon e3463c8fe3 pt dpp some ignores 2019-07-24 19:35:31 -04:00
William Falcon a8d126b2a2 pt dpp some ignores 2019-07-24 19:32:41 -04:00
William Falcon 10c3266ed4 pt dpp some ignores 2019-07-24 19:30:27 -04:00
William Falcon 6fb27c4526 pt dpp some ignores 2019-07-24 19:29:51 -04:00
William Falcon db9a8cfe78 ignoring dist parallel forward 2019-07-24 19:24:58 -04:00
William Falcon a3ad0e0ac1 ignoring dist parallel forward 2019-07-24 19:23:11 -04:00
William Falcon 4260769e14 ignoring dist parallel forward 2019-07-24 19:18:23 -04:00
William Falcon 9be15aa29f added cpu + amp error 2019-07-24 19:17:08 -04:00
William Falcon a5756d91be added cpu + amp error 2019-07-24 19:12:03 -04:00
William Falcon fcda19aa25 added cpu + amp error 2019-07-24 19:07:53 -04:00
William Falcon efbd1a1c18 added cpu 16 bit 2019-07-24 19:05:46 -04:00
William Falcon ed9d977c4a added cpu 16 bit 2019-07-24 19:05:20 -04:00
William Falcon 65ce10c255 testing -1 gpu option 2019-07-24 19:02:19 -04:00
William Falcon f58c83b399 made root note address individually testable 2019-07-24 18:57:42 -04:00
William Falcon 750fefac0c made root note address individually testable 2019-07-24 18:55:38 -04:00
William Falcon ccd4018dd9 made root note address individually testable 2019-07-24 18:53:12 -04:00
William Falcon 53a0b9f365 moved slurm flag resolution to init 2019-07-24 18:46:21 -04:00
William Falcon f4d8fe5d77 moved slurm flag resolution to init 2019-07-24 18:42:22 -04:00
William Falcon 18ce3e5a23 moved slurm flag resolution to init 2019-07-24 18:40:54 -04:00
William Falcon fb8b03b042 moved slurm flag resolution to init 2019-07-24 18:39:27 -04:00
William Falcon 982f0d4b3a running ddp tests 2019-07-24 18:33:54 -04:00
William Falcon 40b86808c8 running ddp tests 2019-07-24 18:32:48 -04:00
William Falcon 70a2e66ae9 running ddp tests 2019-07-24 18:30:47 -04:00
William Falcon abbbcac9fa running ddp tests 2019-07-24 18:30:35 -04:00
William Falcon 9d588f337f running ddp tests 2019-07-24 18:30:08 -04:00
William Falcon 3451a62650 running ddp tests 2019-07-24 18:27:40 -04:00
William Falcon 1313a7f397 fixed correct module on hpc save 2019-07-24 18:22:49 -04:00
William Falcon 6e2bf991f0 fixed correct module on hpc save 2019-07-24 18:21:22 -04:00
William Falcon a0e2b5ee54 fixed correct module on hpc save 2019-07-24 18:20:56 -04:00
William Falcon 8f0d9af168 fixed correct module on hpc save 2019-07-24 18:18:58 -04:00
William Falcon 7fa759ffed fixed correct module on hpc save 2019-07-24 18:16:31 -04:00
William Falcon 3600535bc5 fixed correct module on hpc save 2019-07-24 18:16:22 -04:00
William Falcon d7be0aae1c fixed correct module on hpc save 2019-07-24 18:16:02 -04:00
William Falcon 7217ecdb18 fixed correct module on hpc save 2019-07-24 18:12:46 -04:00
William Falcon 2e0fde7da7 fixed correct module on hpc save 2019-07-24 18:11:29 -04:00
William Falcon 10330f1991 fixed correct module on hpc save 2019-07-24 18:10:30 -04:00
William Falcon 549a158ec0 fixed correct module on hpc save 2019-07-24 18:09:04 -04:00
William Falcon a63f74281a fixed correct module on hpc save 2019-07-24 18:03:19 -04:00
William Falcon 423bc5c6c9 testing hpc save load 2019-07-24 18:01:33 -04:00
William Falcon 2408aa886d testing hpc save load 2019-07-24 18:00:15 -04:00
William Falcon 97980355e3 testing hpc save load 2019-07-24 17:58:00 -04:00
William Falcon 17f56c83b5 testing hpc save load 2019-07-24 17:57:15 -04:00
William Falcon 8191f268ec test memory printing 2019-07-24 17:56:47 -04:00
William Falcon 436e929458 test memory printing 2019-07-24 17:47:51 -04:00
William Falcon 7f420c0cc2 test memory printing 2019-07-24 17:41:08 -04:00
William Falcon ffdf11b7ed test memory printing 2019-07-24 17:35:39 -04:00
William Falcon 5ebe494212 test memory printing 2019-07-24 17:34:08 -04:00
William Falcon 66abd0d382 test memory printing 2019-07-24 17:31:56 -04:00
William Falcon 1d28b468bd remove exception line 2019-07-24 17:30:16 -04:00
William Falcon d372b21b5e ignore test module model 2019-07-24 17:28:23 -04:00
William Falcon c277ab1036 ignore tests file 2019-07-24 17:27:33 -04:00
William Falcon 56997a0622 ignore argparse from example for tests 2019-07-24 17:26:40 -04:00
William Falcon 63ce8af27c added multiple outputs to LightningTestModel 2019-07-24 17:23:19 -04:00
William Falcon 516ee9c985 added multiple outputs to LightningTestModel 2019-07-24 17:21:18 -04:00
William Falcon 0aa91c7fdc added multiple outputs to LightningTestModel 2019-07-24 17:19:31 -04:00
William Falcon 3521e87286 added multiple outputs to LightningTestModel 2019-07-24 17:18:58 -04:00
William Falcon 9101a70024 refactor tests 2019-07-24 17:12:12 -04:00
William Falcon b30fbf80d0 added test for no dist sampler 2019-07-24 17:11:25 -04:00
William Falcon d1d33e8db6 added test for no dist sampler 2019-07-24 17:10:14 -04:00
William Falcon 164751c918 added test for no dist sampler 2019-07-24 17:09:14 -04:00
William Falcon 096132b389 added test for no dist sampler 2019-07-24 17:04:12 -04:00
William Falcon 9e5dd7a7ea added test for no dist sampler 2019-07-24 17:02:39 -04:00
William Falcon 1e0bae14da added test for no dist sampler 2019-07-24 17:01:25 -04:00
William Falcon 8064a77aa7 added test for no dist sampler 2019-07-24 16:57:21 -04:00
William Falcon 5c21683566 added model for tests 2019-07-24 16:45:59 -04:00
William Falcon f69ff593b5 ignoring multi-node flag 2019-07-24 16:37:05 -04:00
William Falcon 383b4cdac7 added sample input for summary 2019-07-24 16:35:32 -04:00
William Falcon b824f184ff added sample input for summary 2019-07-24 16:31:55 -04:00
William Falcon 5f814e48c4 added sample input for summary 2019-07-24 16:30:27 -04:00
William Falcon 8db8cd2539 added sample input for summary 2019-07-24 16:28:55 -04:00
William Falcon 77a7f3e33e added sample input for summary 2019-07-24 16:27:16 -04:00
William Falcon b8cc62ee52 added sample input for summary 2019-07-24 16:24:58 -04:00
William Falcon 3a86e0fc6c added sample input for summary 2019-07-24 16:23:30 -04:00
William Falcon 7c3786aa52 added sample input for summary 2019-07-24 16:22:09 -04:00
William Falcon 83ccd21bec added sample input for summary 2019-07-24 16:20:42 -04:00
William Falcon f3b0cbf998 removed dead code in grads 2019-07-24 16:19:19 -04:00
William Falcon 97aa69c8f6 removed dead code in grads 2019-07-24 16:16:26 -04:00
William Falcon 7a868c51ae removed dead code in grads 2019-07-24 16:10:32 -04:00
William Falcon 2f4bd676e8 added coverage file 2019-07-24 16:09:24 -04:00
William Falcon ad3d00bcae added coverage file 2019-07-24 16:08:35 -04:00
William Falcon cfd2792d76 added coverage file 2019-07-24 16:04:36 -04:00
William Falcon dfccc03da8 added coverage file 2019-07-24 16:04:18 -04:00
William Falcon 843675e9a1 added coverage file 2019-07-24 16:00:48 -04:00
William Falcon eae4fa0495 added coverage file 2019-07-24 15:57:18 -04:00
William Falcon cc875cd603 added coverage file 2019-07-24 15:56:33 -04:00
William Falcon e3ed5bfbc7 added coverage file 2019-07-24 15:56:27 -04:00
William Falcon 23e0986141 removed coverage file 2019-07-24 15:54:14 -04:00
William Falcon ea7be12bb1 added coverage file 2019-07-24 15:52:59 -04:00
William Falcon 9b792bf4d4 removed dead code in model save 2019-07-24 15:48:41 -04:00
William Falcon d4d0f54a37 removed dead code in model save 2019-07-24 15:48:35 -04:00
William Falcon b7ca857434 removed dead code in model save 2019-07-24 15:44:04 -04:00
William Falcon b836e6f321 removed dead code in model save 2019-07-24 15:43:10 -04:00
William Falcon 08c76c47bd removed opt check 2019-07-24 15:38:15 -04:00
William Falcon 74d714f159 removed opt check 2019-07-24 15:33:08 -04:00
William Falcon 79c0054c38 removed forkedpdb 2019-07-24 15:28:23 -04:00
William Falcon ebc120a3c3 removed forkedpdb 2019-07-24 15:27:59 -04:00
William Falcon bc40be3490 removed old files 2019-07-24 15:23:52 -04:00
William Falcon 1f67fbdb80 removed old files 2019-07-24 15:23:38 -04:00
William Falcon 1a6ee20dff removed old files 2019-07-24 15:15:14 -04:00
William Falcon 8b6217733a added auto port find 2019-07-24 15:11:50 -04:00
William Falcon b1e16c2e7b added auto port find 2019-07-24 15:11:29 -04:00
William Falcon 9f0d963e37 added auto port find 2019-07-24 15:08:59 -04:00
William Falcon b5c67d91e5 added auto port find 2019-07-24 15:00:14 -04:00
William Falcon 90ff418017 added auto port find 2019-07-24 14:59:51 -04:00
William Falcon 98be54de80 added auto port find 2019-07-24 14:59:40 -04:00
William Falcon e3f01388df added auto port find 2019-07-24 14:57:54 -04:00
William Falcon afa25a26d9 added auto port find 2019-07-24 14:57:17 -04:00
William Falcon 46886f0c3c added auto port find 2019-07-24 14:57:09 -04:00
William Falcon 9a3f373d16 added auto port find 2019-07-24 14:56:35 -04:00
William Falcon 8651173920 added auto port find 2019-07-24 14:55:26 -04:00
William Falcon e52190e22b added auto port find 2019-07-24 14:55:00 -04:00
William Falcon 0c239da17c added auto port find 2019-07-24 14:54:20 -04:00
William Falcon d0343604b3 added auto port find 2019-07-24 14:53:08 -04:00
William Falcon 4b2096d2c6 added auto port find 2019-07-24 14:52:19 -04:00
William Falcon 01c0d9a2d4 added auto port find 2019-07-24 14:48:56 -04:00
William Falcon 34ddb0ec98 added auto port find 2019-07-24 14:45:47 -04:00
William Falcon 5439dc0844 auto port kill before starting ddp 2019-07-24 14:38:09 -04:00
William Falcon 446a44b085 auto port kill before starting ddp 2019-07-24 14:36:47 -04:00
William Falcon 8f06118154 auto port kill before starting ddp 2019-07-24 14:36:29 -04:00
William Falcon 1ae91aac32 moved port name 2019-07-24 14:30:31 -04:00
William Falcon b20a122e9c fixed amp bug 2019-07-24 14:23:52 -04:00
William Falcon 9e187574de fixed amp bug 2019-07-24 14:17:36 -04:00
William Falcon 5fe833ae01 fixed amp bug 2019-07-24 14:16:05 -04:00
William Falcon ca1835e063 fixed amp bug 2019-07-24 14:14:36 -04:00
William Falcon 4d559d9e3b fixed amp bug 2019-07-24 14:12:41 -04:00
William Falcon 1b273a32ee fixed amp bug 2019-07-24 14:11:05 -04:00
William Falcon dd4f8899c8 refactored model tests 2019-07-24 14:06:35 -04:00
William Falcon 42b86a160d refactored model tests 2019-07-24 14:04:17 -04:00
William Falcon d004fc5725 refactored model tests 2019-07-24 14:00:29 -04:00
William Falcon 6169d22813 refactored model tests 2019-07-24 13:59:51 -04:00
William Falcon c26d200c41 refactored model tests 2019-07-24 13:57:34 -04:00
William Falcon ecb68b52f8 refactored model tests 2019-07-24 13:56:49 -04:00
William Falcon ef843d5f96 refactored model tests 2019-07-24 13:56:21 -04:00
William Falcon cf7da86c7c refactored model tests 2019-07-24 13:55:20 -04:00
William Falcon 0e9e07835c refactored model tests 2019-07-24 13:53:34 -04:00
William Falcon a729cfc9cc refactored model tests 2019-07-24 13:51:54 -04:00
William Falcon 3521051877 refactored model tests 2019-07-24 13:51:12 -04:00
William Falcon 53f1f18442 refactored model tests 2019-07-24 13:50:02 -04:00
William Falcon 7d1e1eb7f9 refactored model tests 2019-07-24 13:49:28 -04:00
William Falcon 4e6c7f80e5 refactored model tests 2019-07-24 13:47:37 -04:00
William Falcon aba7006fc2 refactored model tests 2019-07-24 13:46:32 -04:00
William Falcon 3d31219c85 refactored model tests 2019-07-24 13:45:22 -04:00
William Falcon 8a43f4307e refactored model tests 2019-07-24 13:42:42 -04:00
William Falcon b90841dc3d refactored model tests 2019-07-24 13:41:28 -04:00
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William Falcon f50026c21f refactored model tests 2019-07-24 12:03:39 -04:00
William Falcon 078cad768b fixed multi-gpu tests 2019-07-24 12:00:40 -04:00
William Falcon 98f6afd99a added test for model loading and predicting 2019-07-24 11:56:25 -04:00
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William Falcon 1fd6158cea added debugging util 2019-07-24 10:32:21 -04:00
William Falcon 57a99e2aa5 updated test docs 2019-07-24 10:30:41 -04:00
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William Falcon e62973dfd3 added min accuracy to models test 2019-07-24 08:53:59 -04:00
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43 changed files with 1773 additions and 754 deletions
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@@ -9,6 +9,7 @@ model_weights/
app/models/
pip-wheel-metadata/
test_tube_exp/
tests/tests_tt_dir/
# Byte-compiled / optimized / DLL files
__pycache__/
@@ -119,4 +120,4 @@ ENV/
.mypy_cache/
# data
mnist/
mnist/
+19
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@@ -0,0 +1,19 @@
# .readthedocs.yml
# Read the Docs configuration file
# See https://docs.readthedocs.io/en/stable/config-file/v2.html for details
# Required
version: 2
# Build documentation with MkDocs
mkdocs:
configuration: mkdocs.yml
# Optionally build your docs in additional formats such as PDF and ePub
formats: all
# Optionally set the version of Python and requirements required to build your docs
python:
version: 3.7
install:
- requirements: docs/doc_requirements.txt
+16
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@@ -0,0 +1,16 @@
language: python
python:
- "3.7"
# command to install dependencies
cache: pip
install:
- pip install -e .
- pip install -r requirements.txt
- pip install -U numpy
# keep build from timing out
dist: xenial
# command to run tests
script:
- py.test # or py.test for Python versions 3.5 and below
+96 -21
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@@ -9,31 +9,103 @@
<p align="center">
The Keras for ML researchers using PyTorch. More control. Less boilerplate.
</p>
<p align="center">
<a href="https://badge.fury.io/py/pytorch-lightning"><img src="https://badge.fury.io/py/pytorch-lightning.svg" alt="PyPI version" height="18"></a>
<!-- <a href="https://travis-ci.org/williamFalcon/test-tube"><img src="https://travis-ci.org/williamFalcon/pytorch-lightning.svg?branch=master"></a> -->
<a href="https://pepy.tech/project/pytorch-lightning"><img src="https://pepy.tech/badge/pytorch-lightning" alt="PyPI version" height="18"></a>
<a href="https://github.com/williamFalcon/pytorch-lightning/tree/master/tests"><img src="https://github.com/williamFalcon/pytorch-lightning/blob/master/coverage.svg"></a>
<a href="https://travis-ci.org/williamFalcon/pytorch-lightning"><img src="https://travis-ci.org/williamFalcon/pytorch-lightning.svg?branch=master"></a>
<a href="https://williamfalcon.github.io/pytorch-lightning/"><img src="https://readthedocs.org/projects/pytorch-lightning/badge/?version=latest"></a>
<a href="https://github.com/williamFalcon/pytorch-lightning/blob/master/COPYING"><img src="https://img.shields.io/badge/License-MIT-yellow.svg"></a>
</p>
```bash
pip install pytorch-lightning
pip install pytorch-lightning
```
## Docs
**[View the docs here](https://williamfalcon.github.io/pytorch-lightning/)**
## What is it?
Keras and fast.ai are too abstract for researchers. Lightning abstracts the full training loop but gives you control in the critical points.
Lightning defers training and validation loop logic to you. It guarantees correct, modern best practices for the core training logic.
## Why do I want to use lightning?
Because you don't want to define a training loop, validation loop, gradient clipping, checkpointing, loading,
gpu training, etc... every time you start a project. Let lightning handle all of that for you! Just define your
data and what happens in the training, testing and validation loop and lightning will do the rest.
When starting a new project the last thing you want to do is recode a training loop, model loading/saving, distributed training, when to validate, etc... You're likely to spend a long time ironing out all the bugs without even getting to the core of your research.
With lightning, you guarantee those parts of your code work so you can focus on what the meat of the research: Data and training, validation loop logic. Don't worry about multiple gpus or speeding up your code, lightning will do that for you!
## How do I do use it?
To use lightning do 2 things:
1. [Define a Trainer](https://github.com/williamFalcon/pytorch-lightning/blob/master/examples/new_project_templates/trainer_cpu_template.py).
2. [Define a LightningModel](https://github.com/williamFalcon/pytorch-lightning/blob/master/examples/new_project_templates/lightning_module_template.py).
1. [Define a LightningModel](https://williamfalcon.github.io/pytorch-lightning/LightningModule/RequiredTrainerInterface/)
```python
import pytorch_lightning as ptl
import torch
from torch.nn import functional as F
from torch.utils.data import DataLoader
from torchvision.datasets import MNIST
class CoolModel(ptl.LightningModule):
def __init(self):
super(CoolModel, self).__init__()
# not the best model...
self.l1 = torch.nn.Linear(28 * 28, 10)
def forward(self, x):
return torch.relu(self.l1(x))
def my_loss(self, y_hat, y):
return F.cross_entropy(y_hat, y)
def training_step(self, batch, batch_nb):
x, y = batch
y_hat = self.forward(x)
return {'tng_loss': self.my_loss(y_hat, y)}
def validation_step(self, batch, batch_nb):
x, y = batch
y_hat = self.forward(x)
return {'val_loss': self.my_loss(y_hat, y)}
def validation_end(self, outputs):
avg_loss = torch.stack([x for x in outputs['val_loss']]).mean()
return avg_loss
def configure_optimizers(self):
return [torch.optim.Adam(self.parameters(), lr=0.02)]
@ptl.data_loader
def tng_dataloader(self):
return DataLoader(MNIST('path/to/save', train=True), batch_size=32)
@ptl.data_loader
def val_dataloader(self):
return DataLoader(MNIST('path/to/save', train=False), batch_size=32)
@ptl.data_loader
def test_dataloader(self):
return DataLoader(MNIST('path/to/save', train=False), batch_size=32)
```
2. Fit with a [trainer](https://williamfalcon.github.io/pytorch-lightning/Trainer/)
```python
from pytorch_lightning import Trainer
from test_tube import Experiment
model = CoolModel()
# fit on 32 gpus across 4 nodes
exp = Experiment(save_dir='some/dir')
trainer = Trainer(experiment=exp, nb_gpu_nodes=4, gpus=[0,1,2,3,4,5,6,7])
trainer.fit(model)
# see all experiment metrics here
# tensorboard --log_dir some/dir
```
## What does lightning control for me?
Everything!
@@ -148,7 +220,7 @@ And run tensorboard from that dir
tensorboard --logdir /some/path
```
## Lightning automatically automates all of the following ([each is also configurable](https://williamfalcon.github.io/pytorch-lightning/Trainer/)):
## Lightning automates all of the following ([each is also configurable](https://williamfalcon.github.io/pytorch-lightning/Trainer/)):
###### Checkpointing
@@ -215,19 +287,22 @@ pip install pytorch-lightning
# clone lightning for the demo
git clone https://github.com/williamFalcon/pytorch-lightning.git
cd examples/new_project_templates/
cd pytorch_lightning/examples/new_project_templates/
# run demo (on cpu)
python trainer_gpu_cluster_template.py
# all of the following demos use the SAME model to show no modification needs to be made to your code
# train on cpu
python single_cpu_template.py
# train on multiple-gpus
python single_gpu_node_template.py --gpus "0,1"
# train on 32 gpus on a cluster (run on a SLURM managed cluster)
python multi_node_cluster_template.py --nb_gpu_nodes 4 --gpus '0,1,2,3,4,5,6,7'
```
Without changing the model AT ALL, you can run the model on a single gpu, over multiple gpus, or over multiple nodes.
## Bleeding edge
If you can't wait for the next release, install the most up to date code with:
```bash
# run a grid search on two gpus
python fully_featured_trainer.py --gpus "0;1"
# run single model on multiple gpus
python fully_featured_trainer.py --gpus "0;1" --interactive
```
pip install git+https://github.com/williamFalcon/pytorch-lightning.git@master --upgrade
```
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@@ -0,0 +1,21 @@
<?xml version="1.0" encoding="UTF-8"?>
<svg xmlns="http://www.w3.org/2000/svg" width="99" height="20">
<linearGradient id="b" x2="0" y2="100%">
<stop offset="0" stop-color="#bbb" stop-opacity=".1"/>
<stop offset="1" stop-opacity=".1"/>
</linearGradient>
<mask id="a">
<rect width="99" height="20" rx="3" fill="#fff"/>
</mask>
<g mask="url(#a)">
<path fill="#555" d="M0 0h63v20H0z"/>
<path fill="#4c1" d="M63 0h36v20H63z"/>
<path fill="url(#b)" d="M0 0h99v20H0z"/>
</g>
<g fill="#fff" text-anchor="middle" font-family="DejaVu Sans,Verdana,Geneva,sans-serif" font-size="11">
<text x="31.5" y="15" fill="#010101" fill-opacity=".3">coverage</text>
<text x="31.5" y="14">coverage</text>
<text x="80" y="15" fill="#010101" fill-opacity=".3">99%</text>
<text x="80" y="14">99%</text>
</g>
</svg>

After

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@@ -3,7 +3,7 @@
A lightning module is a strict superclass of nn.Module, it provides a standard interface for the trainer to interact with the model.
The easiest thing to do is copy [this template](../../examples/new_project_templates/lightning_module_template.py) and modify accordingly.
The easiest thing to do is copy [this template](../../pytorch_lightning/examples/new_project_templates/lightning_module_template.py) and modify accordingly.
Otherwise, to Define a Lightning Module, implement the following methods:
@@ -14,8 +14,6 @@ Otherwise, to Define a Lightning Module, implement the following methods:
- [validation_end](RequiredTrainerInterface.md#validation_end)
- [configure_optimizers](RequiredTrainerInterface.md#configure_optimizers)
- [get_save_dict](RequiredTrainerInterface.md#get_save_dict)
- [load_model_specific](RequiredTrainerInterface.md#load_model_specific)
- [tng_dataloader](RequiredTrainerInterface.md#tng_dataloader)
- [tng_dataloader](RequiredTrainerInterface.md#tng_dataloader)
@@ -23,9 +21,63 @@ Otherwise, to Define a Lightning Module, implement the following methods:
**Optional**:
- [on_save_checkpoint](RequiredTrainerInterface.md#on_save_checkpoint)
- [on_load_checkpoint](RequiredTrainerInterface.md#on_load_checkpoint)
- [update_tng_log_metrics](RequiredTrainerInterface.md#update_tng_log_metrics)
- [add_model_specific_args](RequiredTrainerInterface.md#add_model_specific_args)
---
**Minimal example**
```python
import pytorch_lightning as ptl
import torch
from torch.nn import functional as F
from torch.utils.data import DataLoader
from torchvision.datasets import MNIST
class CoolModel(ptl.LightningModule):
def __init(self):
super(CoolModel, self).__init__()
# not the best model...
self.l1 = torch.nn.Linear(28 * 28, 10)
def forward(self, x):
return torch.relu(self.l1(x))
def my_loss(self, y_hat, y):
return F.cross_entropy(y_hat, y)
def training_step(self, batch, batch_nb):
x, y = batch
y_hat = self.forward(x)
return {'tng_loss': self.my_loss(y_hat, y)}
def validation_step(self, batch, batch_nb):
x, y = batch
y_hat = self.forward(x)
return {'val_loss': self.my_loss(y_hat, y)}
def validation_end(self, outputs):
avg_loss = torch.stack([x for x in outputs['val_loss']]).mean()
return avg_loss
def configure_optimizers(self):
return [torch.optim.Adam(self.parameters(), lr=0.02)]
@ptl.data_loader
def tng_dataloader(self):
return DataLoader(MNIST('path/to/save', train=True), batch_size=32)
@ptl.data_loader
def val_dataloader(self):
return DataLoader(MNIST('path/to/save', train=False), batch_size=32)
@ptl.data_loader
def test_dataloader(self):
return DataLoader(MNIST('path/to/save', train=False), batch_size=32)
```
---
### training_step
@@ -193,34 +245,35 @@ def configure_optimizers(self):
```
---
### get_save_dict
### on_save_checkpoint
``` {.python}
def get_save_dict(self)
def on_save_checkpoint(self, checkpoint)
```
Called by lightning to checkpoint your model. Lightning saves current epoch, current batch nb, etc...
All you have to return is what specifically about your lightning model you want to checkpoint.
Called by lightning to checkpoint your model. Lightning saves the training state (current epoch, global_step, etc)
and also saves the model state_dict. If you want to save anything else, use this method to add your own
key-value pair.
##### Return
Dictionary - No required keys. Most of the time as described in this example.
Nothing
**Example**
``` {.python}
def get_save_dict(self):
# 99% of use cases this is all you need to return
checkpoint = {'state_dict': self.state_dict()}
return checkpoint
def on_save_checkpoint(self, checkpoint):
# 99% of use cases you don't need to implement this method
checkpoint['something_cool_i_want_to_save'] = my_cool_pickable_object
```
---
### load_model_specific
### on_load_checkpoint
``` {.python}
def load_model_specific(self, checkpoint)
def on_load_checkpoint(self, checkpoint)
```
Called by lightning to restore your model. This is your chance to restore your model using the keys you added in get_save_dict.
Lightning will automatically restore current epoch, batch nb, etc.
Called by lightning to restore your model. Lighting auto-restores global step, epoch, etc...
It also restores the model state_dict.
If you saved something with **on_save_checkpoint** this is your chance to restore this.
##### Return
Nothing
@@ -228,19 +281,19 @@ Nothing
**Example**
``` {.python}
def load_model_specific(self, checkpoint):
# you defined 'state_dict' in get_save_dict()
self.load_state_dict(checkpoint['state_dict'])
def on_load_checkpoint(self, checkpoint):
# 99% of the time you don't need to implement this method
self.something_cool_i_want_to_save = checkpoint['something_cool_i_want_to_save']
```
---
### tng_dataloader
``` {.python}
@property
@ptl.data_loader
def tng_dataloader(self)
```
Called by lightning during training loop. Define it as a property.
Called by lightning during training loop. Make sure to use the @ptl.data_loader decorator, this ensures not calling this function until the data are needed.
##### Return
Pytorch DataLoader
@@ -248,32 +301,26 @@ Pytorch DataLoader
**Example**
``` {.python}
@property
@ptl.data_loader
def tng_dataloader(self):
if self._tng_dataloader is None:
try:
transform = transforms.Compose([transforms.ToTensor(), transforms.Normalize((0.5,), (1.0,))])
dataset = MNIST(root='/path/to/mnist/', train=True, transform=transform, download=True)
loader = torch.utils.data.DataLoader(
dataset=dataset,
batch_size=self.hparams.batch_size,
shuffle=True
)
self._tng_dataloader = loader
except Exception as e:
raise e
return self._tng_dataloader
transform = transforms.Compose([transforms.ToTensor(), transforms.Normalize((0.5,), (1.0,))])
dataset = MNIST(root='/path/to/mnist/', train=True, transform=transform, download=True)
loader = torch.utils.data.DataLoader(
dataset=dataset,
batch_size=self.hparams.batch_size,
shuffle=True
)
return loader
```
---
### val_dataloader
``` {.python}
@property
@ptl.data_loader
def tng_dataloader(self)
```
Called by lightning during validation loop. Define it as a property.
Called by lightning during validation loop. Make sure to use the @ptl.data_loader decorator, this ensures not calling this function until the data are needed.
##### Return
Pytorch DataLoader
@@ -281,32 +328,27 @@ Pytorch DataLoader
**Example**
``` {.python}
@property
@ptl.data_loader
def val_dataloader(self):
if self._val_dataloader is None:
try:
transform = transforms.Compose([transforms.ToTensor(), transforms.Normalize((0.5,), (1.0,))])
dataset = MNIST(root='/path/to/mnist/', train=False, transform=transform, download=True)
loader = torch.utils.data.DataLoader(
dataset=dataset,
batch_size=self.hparams.batch_size,
shuffle=True
)
self._val_dataloader = loader
except Exception as e:
raise e
return self._val_dataloader
transform = transforms.Compose([transforms.ToTensor(), transforms.Normalize((0.5,), (1.0,))])
dataset = MNIST(root='/path/to/mnist/', train=False, transform=transform, download=True)
loader = torch.utils.data.DataLoader(
dataset=dataset,
batch_size=self.hparams.batch_size,
shuffle=True
)
return loader
```
---
### test_dataloader
``` {.python}
@property
@ptl.data_loader
def test_dataloader(self)
```
Called by lightning during test loop. Define it as a property.
Called by lightning during test loop. Make sure to use the @ptl.data_loader decorator, this ensures not calling this function until the data are needed.
##### Return
Pytorch DataLoader
@@ -314,22 +356,17 @@ Pytorch DataLoader
**Example**
``` {.python}
@property
@ptl.data_loader
def test_dataloader(self):
if self._test_dataloader is None:
try:
transform = transforms.Compose([transforms.ToTensor(), transforms.Normalize((0.5,), (1.0,))])
dataset = MNIST(root='/path/to/mnist/', train=False, transform=transform, download=True)
loader = torch.utils.data.DataLoader(
dataset=dataset,
batch_size=self.hparams.batch_size,
shuffle=True
)
self._test_dataloader = loader
except Exception as e:
raise e
return self._test_dataloader
transform = transforms.Compose([transforms.ToTensor(), transforms.Normalize((0.5,), (1.0,))])
dataset = MNIST(root='/path/to/mnist/', train=False, transform=transform, download=True)
loader = torch.utils.data.DataLoader(
dataset=dataset,
batch_size=self.hparams.batch_size,
shuffle=True
)
return loader
```
---
+2 -1
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@@ -21,7 +21,8 @@ pretrained_model = MyLightningModule.load_from_metrics(
map_location=None
)
# predict
# predict
pretrained_model.eval()
pretrained_model.freeze()
y_hat = pretrained_model(x)
```
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@@ -0,0 +1 @@
mkdocs-material==4.4.0
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@@ -1,10 +1,11 @@
###### New project Quick Start
To start a new project define these two files.
1. [Define a LightningModule](/LightningModule/RequiredTrainerInterface/#template-model-definition)
2. Pick a trainer
- [Basic CPU Trainer](https://github.com/williamFalcon/pytorch-lightning/blob/master/examples/new_project_templates/trainer_cpu_template.py)
- [GPU cluster Trainer](https://github.com/williamFalcon/pytorch-lightning/blob/master/examples/new_project_templates/trainer_gpu_cluster_template.py)
1. [Define a LightningModule](/pytorch-lightning/LightningModule/RequiredTrainerInterface/)
2. [Define a trainer](https://williamfalcon.github.io/pytorch-lightning/Trainer/)
- [Basic CPU Trainer Template](https://github.com/williamFalcon/pytorch-lightning/blob/master/pytorch_lightning/examples/new_project_templates/single_cpu_template.py)
- [Multi-GPU Trainer Template](https://github.com/williamFalcon/pytorch-lightning/blob/master/pytorch_lightning/examples/new_project_templates/single_gpu_node_template.py)
- [GPU cluster Trainer Template](https://github.com/williamFalcon/pytorch-lightning/blob/master/pytorch_lightning/examples/new_project_templates/multi_node_cluster_template.py)
###### Docs shortcuts
- [LightningModule](LightningModule/RequiredTrainerInterface/)
@@ -1 +0,0 @@
from .lightning_module_template import LightningTemplateModel
+2 -1
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@@ -1,2 +1,3 @@
from .models import Trainer
from .root_module.root_module import LightningModule
from .root_module.root_module import LightningModule
from .root_module.decorators import data_loader
+1
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@@ -0,0 +1 @@
from .new_project_templates.lightning_module_template import LightningTemplateModel
@@ -10,6 +10,7 @@ from torch import optim
from torch.utils.data import DataLoader
from torch.utils.data.distributed import DistributedSampler
import pytorch_lightning as ptl
from pytorch_lightning.root_module.root_module import LightningModule
@@ -24,10 +25,14 @@ class LightningTemplateModel(LightningModule):
:param hparams:
"""
# init superclass
super(LightningTemplateModel, self).__init__(hparams)
super(LightningTemplateModel, self).__init__()
self.hparams = hparams
self.batch_size = hparams.batch_size
# if you specify an example input, the summary will show input/output for each layer
self.example_input_array = torch.rand(5, 28 * 28)
# build model
self.__build_model()
@@ -78,11 +83,16 @@ class LightningTemplateModel(LightningModule):
# forward pass
x, y = data_batch
x = x.view(x.size(0), -1)
y_hat = self.forward(x)
# calculate loss
loss_val = self.loss(y, y_hat)
# in DP mode (default) make sure if result is scalar, there's another dim in the beginning
if self.trainer.use_dp:
loss_val = loss_val.unsqueeze(0)
output = OrderedDict({
'loss': loss_val
})
@@ -105,10 +115,19 @@ class LightningTemplateModel(LightningModule):
# acc
labels_hat = torch.argmax(y_hat, dim=1)
val_acc = torch.sum(y == labels_hat).item() / (len(y) * 1.0)
val_acc = torch.tensor(val_acc)
if self.on_gpu:
val_acc = val_acc.cuda(loss_val.device.index)
# in DP mode (default) make sure if result is scalar, there's another dim in the beginning
if self.trainer.use_dp:
loss_val = loss_val.unsqueeze(0)
val_acc = val_acc.unsqueeze(0)
output = OrderedDict({
'val_loss': loss_val,
'val_acc': torch.tensor(val_acc).cuda(loss_val.device.index),
'val_acc': val_acc,
})
# can also return just a scalar instead of a dict (return loss_val)
@@ -135,20 +154,6 @@ class LightningTemplateModel(LightningModule):
tqdm_dic = {'val_loss': val_loss_mean.item(), 'val_acc': val_acc_mean.item()}
return tqdm_dic
def update_tng_log_metrics(self, logs):
return logs
# ---------------------
# MODEL SAVING
# ---------------------
def get_save_dict(self):
checkpoint = {'state_dict': self.state_dict()}
return checkpoint
def load_model_specific(self, checkpoint):
self.load_state_dict(checkpoint['state_dict'])
pass
# ---------------------
# TRAINING SETUP
# ---------------------
@@ -186,38 +191,23 @@ class LightningTemplateModel(LightningModule):
return loader
@property
@ptl.data_loader
def tng_dataloader(self):
if self._tng_dataloader is None:
try:
self._tng_dataloader = self.__dataloader(train=True)
except Exception as e:
print(e)
raise e
return self._tng_dataloader
print('tng data loader called')
return self.__dataloader(train=True)
@property
@ptl.data_loader
def val_dataloader(self):
if self._val_dataloader is None:
try:
self._val_dataloader = self.__dataloader(train=False)
except Exception as e:
print(e)
raise e
return self._val_dataloader
print('val data loader called')
return self.__dataloader(train=False)
@property
@ptl.data_loader
def test_dataloader(self):
if self._test_dataloader is None:
try:
self._test_dataloader = self.__dataloader(train=False)
except Exception as e:
print(e)
raise e
return self._test_dataloader
print('test data loader called')
return self.__dataloader(train=False)
@staticmethod
def add_model_specific_args(parent_parser, root_dir):
def add_model_specific_args(parent_parser, root_dir): # pragma: no cover
"""
Parameters you define here will be available to your model through self.hparams
:param parent_parser:
@@ -1,203 +0,0 @@
import torch.nn as nn
import numpy as np
from pytorch_lightning.root_module.root_module import LightningModule
from test_tube import HyperOptArgumentParser
from torchvision.datasets import MNIST
import torchvision.transforms as transforms
import torch
import torch.nn.functional as F
class ExampleModel1(LightningModule):
"""
Sample model to show how to define a template
"""
def __init__(self, hparams):
# init superclass
super(ExampleModel1, self).__init__(hparams)
self.batch_size = hparams.batch_size
# build model
self.__build_model()
# ---------------------
# MODEL SETUP
# ---------------------
def __build_model(self):
"""
Layout model
:return:
"""
self.c_d1 = nn.Linear(in_features=self.hparams.in_features, out_features=self.hparams.hidden_dim)
self.c_d1_bn = nn.BatchNorm1d(self.hparams.hidden_dim)
self.c_d1_drop = nn.Dropout(self.hparams.drop_prob)
self.c_d2 = nn.Linear(in_features=self.hparams.hidden_dim, out_features=self.hparams.out_features)
# ---------------------
# TRAINING
# ---------------------
def forward(self, x):
x = self.c_d1(x)
x = F.tanh(x)
x = self.c_d1_bn(x)
x = self.c_d1_drop(x)
x = self.c_d2(x)
logits = F.log_softmax(x, dim=1)
return logits
def loss(self, labels, logits):
nll = F.nll_loss(logits, labels)
return nll
def training_step(self, data_batch):
"""
Called inside the training loop
:param data_batch:
:return:
"""
# forward pass
x, y = data_batch
x = x.view(x.size(0), -1)
y_hat = self.forward(x)
# calculate loss
loss_val = self.loss(y, y_hat)
tqdm_dic = {'jefe': 1}
return loss_val, tqdm_dic
def validation_step(self, data_batch):
"""
Called inside the validation loop
:param data_batch:
:return:
"""
x, y = data_batch
x = x.view(x.size(0), -1)
y_hat = self.forward(x)
loss_val = self.loss(y, y_hat)
# acc
labels_hat = torch.argmax(y_hat, dim=1)
val_acc = torch.sum(y == labels_hat).item() / (len(y) * 1.0)
output = {'y_hat': y_hat, 'val_loss': loss_val.item(), 'val_acc': val_acc}
return output
def validation_end(self, outputs):
"""
Called at the end of validation to aggregate outputs
:param outputs: list of individual outputs of each validation step
:return:
"""
val_loss_mean = 0
accs = []
for output in outputs:
val_loss_mean += output['val_loss']
accs.append(output['val_acc'])
val_loss_mean /= len(outputs)
tqdm_dic = {'val_loss': val_loss_mean, 'val_acc': np.mean(accs)}
return tqdm_dic
def update_tng_log_metrics(self, logs):
return logs
# ---------------------
# MODEL SAVING
# ---------------------
def get_save_dict(self):
checkpoint = {
'state_dict': self.state_dict(),
}
return checkpoint
def load_model_specific(self, checkpoint):
self.load_state_dict(checkpoint['state_dict'])
pass
# ---------------------
# TRAINING SETUP
# ---------------------
def configure_optimizers(self):
"""
return whatever optimizers we want here
:return: list of optimizers
"""
optimizer = self.choose_optimizer(self.hparams.optimizer_name, self.parameters(), {'lr': self.hparams.learning_rate}, 'optimizer')
self.optimizers = [optimizer]
return self.optimizers
def __dataloader(self, train):
# init data generators
transform = transforms.Compose([transforms.ToTensor(), transforms.Normalize((0.5,), (1.0,))])
dataset = MNIST(root=self.hparams.data_root, train=train, transform=transform, download=True)
loader = torch.utils.data.DataLoader(
dataset=dataset,
batch_size=self.hparams.batch_size,
shuffle=True
)
return loader
@property
def tng_dataloader(self):
if self._tng_dataloader is None:
try:
self._tng_dataloader = self.__dataloader(train=True)
except Exception as e:
print(e)
raise e
return self._tng_dataloader
@property
def val_dataloader(self):
if self._val_dataloader is None:
try:
self._val_dataloader = self.__dataloader(train=False)
except Exception as e:
print(e)
raise e
return self._val_dataloader
@property
def test_dataloader(self):
if self._test_dataloader is None:
try:
self._test_dataloader = self.__dataloader(train=False)
except Exception as e:
print(e)
raise e
return self._test_dataloader
@staticmethod
def add_model_specific_args(parent_parser):
parser = HyperOptArgumentParser(strategy=parent_parser.strategy, parents=[parent_parser])
# param overwrites
# parser.set_defaults(gradient_clip=5.0)
# network params
parser.opt_list('--drop_prob', default=0.2, options=[0.2, 0.5], type=float, tunable=False)
parser.add_argument('--in_features', default=28*28)
parser.add_argument('--hidden_dim', default=500)
parser.add_argument('--out_features', default=10)
# data
parser.add_argument('--data_root', default='/Users/williamfalcon/Developer/personal/research_lib/research_proj/datasets/mnist', type=str)
# training params (opt)
parser.opt_list('--learning_rate', default=0.001, type=float, options=[0.0001, 0.0005, 0.001, 0.005],
tunable=False)
parser.opt_list('--batch_size', default=256, type=int, options=[32, 64, 128, 256], tunable=False)
parser.opt_list('--optimizer_name', default='adam', type=str, options=['adam'], tunable=False)
return parser
+106 -89
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@@ -19,12 +19,12 @@ import tqdm
from pytorch_lightning.root_module.memory import get_gpu_memory_map
from pytorch_lightning.root_module.model_saving import TrainerIO
from pytorch_lightning.pt_overrides.override_data_parallel import LightningDistributedDataParallel, LightningDataParallel
from pytorch_lightning.utils.debugging import MisconfigurationException
try:
from apex import amp
APEX_AVAILABLE = True
except ModuleNotFoundError:
except Exception:
APEX_AVAILABLE = False
@@ -114,6 +114,7 @@ class Trainer(TrainerIO):
"""
# Transfer params
self.nb_gpu_nodes = nb_gpu_nodes
self.gradient_clip = gradient_clip
self.check_val_every_n_epoch = check_val_every_n_epoch
@@ -150,6 +151,15 @@ class Trainer(TrainerIO):
self.use_ddp = False
self.use_dp = False
# training bookeeping
self.total_batch_nb = 0
self.running_loss = []
self.avg_loss = 0
self.batch_nb = 0
self.tqdm_metrics = {}
self.nb_val_batches = None
self.nb_tng_batches = None
self.nb_test_batches = None
# gpus come in as a string.
# if gpus = -1 then use all available devices
@@ -178,7 +188,7 @@ class Trainer(TrainerIO):
self.use_ddp = distributed_backend == 'ddp'
# use ddp automatically if nb_gpu_nodes > 1
if nb_gpu_nodes > 1 and self.use_dp:
if nb_gpu_nodes > 1 and self.use_dp: # pragma: no cover
self.use_ddp = True
self.use_dp = False
w = 'DataParallel does not support nb_gpu_nodes > 1. ' \
@@ -186,6 +196,19 @@ class Trainer(TrainerIO):
'To silence this warning set distributed_backend=ddp'
warnings.warn(w)
# extract SLURM flag vars
# whenever we have the correct number of tasks, we let slurm manage processes
# otherwise we launch the required number of processes
if self.use_ddp:
self.nb_requested_gpus = len(self.data_parallel_device_ids) * self.nb_gpu_nodes
self.nb_slurm_tasks = 0
try:
self.nb_slurm_tasks = int(os.environ['SLURM_NTASKS'])
self.is_slurm_managing_tasks = self.nb_slurm_tasks == self.nb_requested_gpus
except Exception as e:
# likely not on slurm, so set the slurm managed flag to false
self.is_slurm_managing_tasks = False
# process info
self.proc_rank = 0
@@ -215,7 +238,7 @@ class Trainer(TrainerIO):
if self.use_amp:
print('using 16bit precision')
if use_amp and not APEX_AVAILABLE:
if use_amp and not APEX_AVAILABLE: # pragma: no cover
msg = '''
You set use_amp=True but do not have apex installed.
Install apex first using this guide and rerun with use_amp=True:
@@ -223,7 +246,7 @@ class Trainer(TrainerIO):
this run will NOT use 16 bit precision
'''
warnings.warn(msg)
raise ModuleNotFoundError(msg)
@property
def data_parallel(self):
@@ -251,6 +274,7 @@ class Trainer(TrainerIO):
@property
def __tng_tqdm_dic(self):
# ForkedPdb().set_trace()
tqdm_dic = {
'tng_loss': '{0:.3f}'.format(self.avg_loss),
'v_nb': '{}'.format(self.experiment.version),
@@ -264,13 +288,15 @@ class Trainer(TrainerIO):
return tqdm_dic
@property
def tng_tqdm_dic(self):
"""
Read-only for tqdm metrics
:return:
"""
return self.__tng_tqdm_dic
def __layout_bookeeping(self):
# training bookeeping
self.total_batch_nb = 0
self.running_loss = []
self.avg_loss = 0
self.batch_nb = 0
self.tqdm_metrics = {}
# determine number of training batches
self.nb_tng_batches = len(self.tng_dataloader)
@@ -317,7 +343,7 @@ class Trainer(TrainerIO):
# run training
for batch_i, data_batch in enumerate(dataloader):
if data_batch is None:
if data_batch is None: # pragma: no cover
continue
# stop short when on fast dev run
@@ -356,7 +382,7 @@ class Trainer(TrainerIO):
return val_results
def __get_dataloaders(self, model):
def get_dataloaders(self, model):
"""
Dataloaders are provided by the model
:param model:
@@ -379,7 +405,7 @@ class Trainer(TrainerIO):
dist_sampler = torch.utils.data.distributed.DistributedSampler(dataset)
dataloader = Dataloader(dataset, sampler=dist_sampler)
'''
raise Exception(msg)
raise MisconfigurationException(msg)
# -----------------------------
# MODEL TRAINING
@@ -391,25 +417,14 @@ class Trainer(TrainerIO):
# must copy only the meta of the exp so it survives pickle/unpickle when going to new process
self.experiment = self.experiment.get_meta_copy()
# whenever we have the correct number of tasks, we let slurm manage processes
# otherwise we launch the required number of processes
nb_requested_gpus = len(self.data_parallel_device_ids) * self.nb_gpu_nodes
nb_slurm_tasks = 0
try:
nb_slurm_tasks = int(os.environ['SLURM_NTASKS'])
is_slurm_managing_tasks = nb_slurm_tasks == nb_requested_gpus
except Exception as e:
# likely not on slurm, so set the slurm managed flag to false
is_slurm_managing_tasks = False
if is_slurm_managing_tasks:
if self.is_slurm_managing_tasks:
task = int(os.environ['SLURM_LOCALID'])
self.ddp_train(task, model)
else:
msg = f"""
You requested {nb_requested_gpus} GPUs but launched {nb_slurm_tasks} slurm tasks.
We will launch {nb_requested_gpus} processes for you.
We recommend you let slurm manage the processes by setting: --ntasks-per-node={nb_requested_gpus}
You requested {self.nb_requested_gpus} GPUs but launched {self.nb_slurm_tasks} slurm tasks.
We will launch {self.nb_requested_gpus} processes for you.
We recommend you let slurm manage the processes by setting: --ntasks-per-node={self.nb_requested_gpus}
If you're not using SLURM, ignore this message!
"""
warnings.warn(msg)
@@ -418,25 +433,25 @@ class Trainer(TrainerIO):
# 1 gpu or dp option triggers training using DP module
# easier to avoid NCCL issues
elif self.use_dp:
self.dp_train(model)
self.__dp_train(model)
# ON CPU
else:
# run through amp wrapper
if self.use_amp:
raise MisconfigurationException('amp + cpu is not supported. Please use a GPU option')
# CHOOSE OPTIMIZER
# filter out the weights that were done on gpu so we can load on good old cpus
self.optimizers = model.configure_optimizers()
# run through amp wrapper
if self.use_amp:
# An example
model, optimizers = amp.initialize(
model, self.optimizers, opt_level=self.amp_level,
)
self.optimizers = optimizers
self.__run_pretrain_routine(model)
def dp_train(self, model):
# return 1 when finished
# used for testing or when we need to know that training succeeded
return 1
def __dp_train(self, model):
# CHOOSE OPTIMIZER
# filter out the weights that were done on gpu so we can load on good old cpus
@@ -444,13 +459,13 @@ class Trainer(TrainerIO):
model.cuda(self.data_parallel_device_ids[0])
# run through amp wrapper
if self.use_amp:
# An example
model, optimizers = amp.initialize(
model, self.optimizers, opt_level=self.amp_level,
)
self.optimizers = optimizers
# check for this bug (amp + dp + !01 doesn't work)
# https://github.com/NVIDIA/apex/issues/227
if self.use_dp and self.use_amp:
m = f'amp level {self.amp_level} with DataParallel is not supported. ' \
f'See this note from NVIDIA for more info: https://github.com/NVIDIA/apex/issues/227. ' \
f'We recommend you switch to ddp if you want to use amp'
raise MisconfigurationException(m)
model = LightningDataParallel(model, device_ids=self.data_parallel_device_ids)
@@ -484,6 +499,9 @@ class Trainer(TrainerIO):
self.proc_rank = self.node_rank * len(self.data_parallel_device_ids) + gpu_nb
self.world_size = self.nb_gpu_nodes * len(self.data_parallel_device_ids)
# let the exp know the rank to avoid overwriting logs
self.experiment.rank = self.proc_rank
# set up server using proc 0's ip address
# try to init for 20 times at max in case ports are taken
# where to store ip_table
@@ -520,33 +538,33 @@ class Trainer(TrainerIO):
:param tries:
:return:
"""
# sets the appropriate port
try:
port = os.environ['MASTER_PORT']
except Exception as e:
port = 12910
os.environ['MASTER_PORT'] = f'{port}'
root_node = self.__resolve_root_node_address()
# figure out the root node addr
try:
root_node = os.environ['SLURM_NODELIST'].split(' ')[0]
except Exception as e:
root_node = '127.0.0.2'
root_node = self.resolve_root_node_address(root_node)
os.environ['MASTER_ADDR'] = root_node
dist.init_process_group("nccl", rank=self.proc_rank, world_size=self.world_size)
def resolve_root_node_address(self, root_node):
if '[' in root_node:
name = root_node.split('[')[0]
number = root_node.split(',')[0]
if '-' in number:
number = number.split('-')[0]
def __resolve_root_node_address(self):
try:
root_node = os.environ['SLURM_NODELIST'].split(' ')[0]
if '[' in root_node:
name = root_node.split('[')[0]
number = root_node.split(',')[0]
if '-' in number:
number = number.split('-')[0]
number = re.sub('[^0-9]', '', number)
root_node = name + number
except Exception as e:
root_node = '127.0.0.2'
number = re.sub('[^0-9]', '', number)
root_node = name + number
return root_node
@@ -566,7 +584,7 @@ class Trainer(TrainerIO):
ref_model.on_gpu = self.on_gpu
# transfer data loaders from model
self.__get_dataloaders(ref_model)
self.get_dataloaders(ref_model)
# init training constants
self.__layout_bookeeping()
@@ -592,14 +610,18 @@ class Trainer(TrainerIO):
if self.proc_rank == 0:
self.experiment.save()
# track model now.
# if cluster resets state, the model will update with the saved weights
self.model = model
# enable cluster checkpointing
if self.cluster is not None:
# also restores training state
if self.cluster is not None: # pragma: no cover
self.enable_auto_hpc_walltime_manager()
# ---------------------------
# CORE TRAINING LOOP
# ---------------------------
self.model = model
self.__train()
def __train(self):
@@ -662,7 +684,7 @@ class Trainer(TrainerIO):
# nb_params, nb_tensors = count_mem_items()
model = self.__get_model()
metrics = model.update_tng_log_metrics(self.__tng_tqdm_dic)
metrics = self.__tng_tqdm_dic
# add gpu memory
if self.on_gpu:
@@ -838,30 +860,25 @@ class Trainer(TrainerIO):
elif not can_check_epoch:
return
try:
# hook
if self.__is_function_implemented('on_pre_performance_check'):
model = self.__get_model()
model.on_pre_performance_check()
# hook
if self.__is_function_implemented('on_pre_performance_check'):
model = self.__get_model()
model.on_pre_performance_check()
# use full val set on end of epoch
# use a small portion otherwise
max_batches = None if not self.fast_dev_run else 1
model_specific_tqdm_metrics_dic = self.validate(
self.model,
self.val_dataloader,
max_batches
)
self.__add_tqdm_metrics(model_specific_tqdm_metrics_dic)
# use full val set on end of epoch
# use a small portion otherwise
max_batches = None if not self.fast_dev_run else 1
model_specific_tqdm_metrics_dic = self.validate(
self.model,
self.val_dataloader,
max_batches
)
self.__add_tqdm_metrics(model_specific_tqdm_metrics_dic)
# hook
if self.__is_function_implemented('on_post_performance_check'):
model = self.__get_model()
model.on_post_performance_check()
except Exception as e:
print(e)
print(traceback.print_exc())
# hook
if self.__is_function_implemented('on_post_performance_check'):
model = self.__get_model()
model.on_post_performance_check()
if self.progress_bar:
# add model specific metrics
@@ -869,6 +886,6 @@ class Trainer(TrainerIO):
self.prog_bar.set_postfix(**tqdm_metrics)
# model checkpointing
if self.proc_rank == 0 and self.checkpoint_callback:
if self.proc_rank == 0 and self.checkpoint_callback is not None:
print('save callback...')
self.checkpoint_callback.on_epoch_end(epoch=self.current_epoch, logs=self.__tng_tqdm_dic)
@@ -9,7 +9,7 @@ from torch.cuda._utils import _get_device_index
import pdb
def _find_tensors(obj):
def _find_tensors(obj): # pragma: no cover
r"""
Recursively find all tensors contained in the specified object.
"""
@@ -22,8 +22,7 @@ def _find_tensors(obj):
return []
def get_a_var(obj):
def get_a_var(obj): # pragma: no cover
if isinstance(obj, torch.Tensor):
return obj
@@ -78,7 +77,7 @@ class LightningDistributedDataParallel(DistributedDataParallel):
def parallel_apply(self, replicas, inputs, kwargs):
return parallel_apply(replicas, inputs, kwargs, self.device_ids[:len(replicas)])
def forward(self, *inputs, **kwargs):
def forward(self, *inputs, **kwargs): # pragma: no cover
self._sync_params()
if self.device_ids:
inputs, kwargs = self.scatter(inputs, kwargs, self.device_ids)
@@ -113,7 +112,7 @@ class LightningDistributedDataParallel(DistributedDataParallel):
return output
def parallel_apply(modules, inputs, kwargs_tup=None, devices=None):
def parallel_apply(modules, inputs, kwargs_tup=None, devices=None): # pragma: no cover
r"""Applies each `module` in :attr:`modules` in parallel on arguments
contained in :attr:`inputs` (positional) and :attr:`kwargs_tup` (keyword)
on each of :attr:`devices`.
@@ -0,0 +1,17 @@
def data_loader(fn):
"""
Decorator to make any fx with this use the lazy property
:param fn:
:return:
"""
attr_name = '_lazy_' + fn.__name__
@property
def _data_loader(self):
if not hasattr(self, attr_name):
setattr(self, attr_name, fn(self))
return getattr(self, attr_name)
return _data_loader
-11
View File
@@ -27,14 +27,3 @@ class GradInformation(nn.Module):
results['grad_{}_norm_total'.format(norm_type)] = round(total_norm.data.cpu().numpy().flatten()[0], 3)
return results
def describe_grads(self):
for p in self.parameters():
g = p.grad.data.numpy().flatten()
print(np.max(g), np.min(g), np.mean(g))
def describe_params(self):
for p in self.parameters():
g = p.data.numpy().flatten()
print(np.max(g), np.min(g), np.mean(g))
+48 -27
View File
@@ -33,33 +33,42 @@ class ModelSummary(object):
mods = list(self.model.modules())
in_sizes = []
out_sizes = []
input_ = self.example_input_array
for i in range(1, len(mods)):
m = mods[i]
if type(input_) is list or type(input_) is tuple:
out = m(*input_)
else:
out = m(input_)
input_ = self.model.example_input_array
if type(input_) is tuple or type(input_) is list:
in_size = []
for x in input_:
if type(x) is list:
in_size.append(len(x))
else:
in_size.append(x.size())
else:
in_size = np.array(input_.size())
if self.model.on_gpu:
input_ = input_.cuda(0)
in_sizes.append(in_size)
if self.model.trainer.use_amp:
input_ = input_.half()
if type(out) is tuple or type(out) is list:
out_size = np.asarray([x.size() for x in out])
else:
out_size = np.array(out.size())
with torch.no_grad():
out_sizes.append(out_size)
input_ = out
for i in range(1, len(mods)):
m = mods[i]
if type(input_) is list or type(input_) is tuple: # pragma: no cover
out = m(*input_)
else:
out = m(input_)
if type(input_) is tuple or type(input_) is list: # pragma: no cover
in_size = []
for x in input_:
if type(x) is list:
in_size.append(len(x))
else:
in_size.append(x.size())
else:
in_size = np.array(input_.size())
in_sizes.append(in_size)
if type(out) is tuple or type(out) is list: # pragma: no cover
out_size = np.asarray([x.size() for x in out])
else:
out_size = np.array(out.size())
out_sizes.append(out_size)
input_ = out
self.in_sizes = in_sizes
self.out_sizes = out_sizes
@@ -114,13 +123,22 @@ class ModelSummary(object):
Layer Name, Layer Type, Input Size, Output Size, Number of Parameters
'''
df = pd.DataFrame( np.zeros( (len(self.layer_names), 3) ) )
df.columns = ['Name', 'Type', 'Params']
cols = ['Name', 'Type', 'Params']
if self.model.example_input_array is not None:
cols.extend(['In_sizes', 'Out_sizes'])
df = pd.DataFrame(np.zeros( (len(self.layer_names), len(cols))))
df.columns = cols
df['Name'] = self.layer_names
df['Type'] = self.layer_types
df['Params'] = self.param_nums
if self.model.example_input_array is not None:
df['In_sizes'] = self.in_sizes
df['Out_sizes'] = self.out_sizes
self.summary = df
return
@@ -128,10 +146,13 @@ class ModelSummary(object):
self.get_layer_names()
self.get_parameter_sizes()
self.get_parameter_nums()
if self.model.example_input_array is not None:
self.get_variable_sizes()
self.make_summary()
def print_mem_stack():
def print_mem_stack(): # pragma: no cover
for obj in gc.get_objects():
try:
if torch.is_tensor(obj) or (hasattr(obj, 'data') and torch.is_tensor(obj.data)):
@@ -140,7 +161,7 @@ def print_mem_stack():
pass
def count_mem_items():
def count_mem_items(): # pragma: no cover
nb_params = 0
nb_tensors = 0
for obj in gc.get_objects():
+48 -28
View File
@@ -4,34 +4,36 @@ import re
import pdb
from pytorch_lightning.pt_overrides.override_data_parallel import LightningDistributedDataParallel, LightningDataParallel
class ModelIO(object):
def load_model_specific(self, checkpoint):
def on_load_checkpoint(self, checkpoint):
"""
Do something with the checkpoint
Gives model a chance to load something before state_dict is restored
:param checkpoint:
:return:
"""
raise NotImplementedError
pass
def get_save_dict(self):
def on_save_checkpoint(self, checkpoint):
"""
Return specific things for the model
:return:
Give the model a chance to add something to the checkpoint.
state_dict is already there
"""
raise NotImplementedError
pass
# -------------------------
# OPTIONAL HOOKS
# -------------------------
def on_hpc_save(self):
def on_hpc_save(self, checkpoint):
"""
Hook to do whatever you need right before Slurm manager saves the model
:return:
"""
pass
def on_hpc_load(self):
def on_hpc_load(self, checkpoint):
"""
Hook to do whatever you need right before Slurm manager loads the model
:return:
@@ -41,6 +43,11 @@ class ModelIO(object):
class TrainerIO(object):
def __get_model(self):
is_dp_module = type(self.model) is LightningDistributedDataParallel or type(self.model) is LightningDataParallel
model = self.model.module if is_dp_module else self.model
return model
# --------------------
# MODEL SAVE CHECKPOINT
# --------------------
@@ -51,27 +58,32 @@ class TrainerIO(object):
torch.save(checkpoint, filepath)
def dump_checkpoint(self):
checkpoint = {
'epoch': self.current_epoch,
'checkpoint_callback_best': self.checkpoint_callback.best,
'early_stop_callback_wait': self.early_stop_callback.wait,
'early_stop_callback_patience': self.early_stop_callback.patience,
'global_step': self.global_step
}
if self.checkpoint_callback is not None:
checkpoint['checkpoint_callback_best'] = self.checkpoint_callback.best
if self.early_stop_callback is not None:
checkpoint['early_stop_callback_wait'] = self.early_stop_callback.wait
checkpoint['early_stop_callback_patience'] = self.early_stop_callback.patience
optimizer_states = []
for i, optimizer in enumerate(self.optimizers):
optimizer_states.append(optimizer.state_dict())
checkpoint['optimizer_states'] = optimizer_states
# request what to save from the model
is_dp_module = type(self.model) is LightningDistributedDataParallel or type(self.model) is LightningDataParallel
model = self.model.module if is_dp_module else self.model
checkpoint_dict = model.get_save_dict()
# add the state_dict from the model
model = self.__get_model()
checkpoint['state_dict'] = model.state_dict()
# give the model a chance to add a few things
model.on_save_checkpoint(checkpoint)
# merge trainer and model saving items
checkpoint.update(checkpoint_dict)
return checkpoint
# --------------------
@@ -104,9 +116,13 @@ class TrainerIO(object):
:param checkpoint:
:return:
"""
self.checkpoint_callback.best = checkpoint['checkpoint_callback_best']
self.early_stop_callback.wait = checkpoint['early_stop_callback_wait']
self.early_stop_callback.patience = checkpoint['early_stop_callback_patience']
if self.checkpoint_callback is not None:
self.checkpoint_callback.best = checkpoint['checkpoint_callback_best']
if self.early_stop_callback is not None:
self.early_stop_callback.wait = checkpoint['early_stop_callback_wait']
self.early_stop_callback.patience = checkpoint['early_stop_callback_patience']
self.global_step = checkpoint['global_step']
self.current_epoch = checkpoint['epoch']
@@ -135,13 +151,15 @@ class TrainerIO(object):
filepath = '{}/hpc_ckpt_{}.ckpt'.format(folderpath, ckpt_number)
# give model a chance to do something on hpc_save
self.on_hpc_save()
model = self.__get_model()
checkpoint = self.dump_checkpoint()
# request what to save from the model
checkpoint_dict = self.dump_checkpoint()
model.on_hpc_save(checkpoint)
# do the actual save
torch.save(checkpoint_dict, filepath)
torch.save(checkpoint, filepath)
return filepath
def hpc_load(self, folderpath, on_gpu):
filepath = '{}/hpc_ckpt_{}.ckpt'.format(folderpath, self.max_ckpt_in_folder(folderpath))
@@ -151,15 +169,17 @@ class TrainerIO(object):
else:
checkpoint = torch.load(filepath, map_location=lambda storage, loc: storage)
# load training state
# load training state (affects trainer only)
self.restore_training_state(checkpoint)
# load model state
model = self.model.module if type(self.model) is LightningDataParallel else self.model
model.load_model_specific(checkpoint)
model = self.__get_model()
# load the state_dict on the model automatically
model.load_state_dict(checkpoint['state_dict'])
# call model hook
self.on_hpc_load()
model.on_hpc_load(checkpoint)
def max_ckpt_in_folder(self, path):
files = os.listdir(path)
@@ -1,22 +0,0 @@
from torch import nn
from torch import optim
class OptimizerConfig(nn.Module):
def choose_optimizer(self, optimizer, params, optimizer_params, opt_name_key):
if optimizer == 'adam':
optimizer = optim.Adam(params, **optimizer_params)
if optimizer == 'sparse_adam':
optimizer = optim.SparseAdam(params, **optimizer_params)
if optimizer == 'sgd':
optimizer = optim.SGD(params, **optimizer_params)
if optimizer == 'adadelta':
optimizer = optim.Adadelta(params, **optimizer_params)
# transfer opt state if loaded
if opt_name_key in self.loaded_optimizer_states_dict:
state = self.loaded_optimizer_states_dict[opt_name_key]
optimizer.load_state_dict(state)
return optimizer
+28 -59
View File
@@ -1,19 +1,15 @@
import os
import torch
import math
from pytorch_lightning.root_module.memory import ModelSummary
from pytorch_lightning.root_module.grads import GradInformation
from pytorch_lightning.root_module.model_saving import ModelIO, load_hparams_from_tags_csv
from pytorch_lightning.root_module.optimization import OptimizerConfig
from pytorch_lightning.root_module.hooks import ModelHooks
from pytorch_lightning.root_module.decorators import data_loader
class LightningModule(GradInformation, ModelIO, OptimizerConfig, ModelHooks):
class LightningModule(GradInformation, ModelIO, ModelHooks):
def __init__(self, hparams):
super(LightningModule, self).__init__()
self.hparams = hparams
def __init__(self, *args, **kwargs):
super(LightningModule, self).__init__(*args, **kwargs)
self.dtype = torch.FloatTensor
self.exp_save_path = None
@@ -22,15 +18,11 @@ class LightningModule(GradInformation, ModelIO, OptimizerConfig, ModelHooks):
self.loaded_optimizer_states_dict = {}
self.trainer = None
self.experiment = None
self.example_input_array = None
# track if gpu was requested for checkpointing
self.on_gpu = False
# computed vars for the dataloaders
self._tng_dataloader = None
self._val_dataloader = None
self._test_dataloader = None
def forward(self, *args, **kwargs):
"""
Expand model in into whatever you need.
@@ -71,37 +63,7 @@ class LightningModule(GradInformation, ModelIO, OptimizerConfig, ModelHooks):
"""
raise NotImplementedError
def update_tng_log_metrics(self, logs):
"""
Chance to update metrics to be logged for training step.
For example, add music, images, etc... to log
:param logs:
:return:
"""
return logs
def loss(self, *args, **kwargs):
"""
Expand model_out into your components
:param model_out:
:return:
"""
raise NotImplementedError
def summarize(self):
model_summary = ModelSummary(self)
print(model_summary)
def freeze(self):
for param in self.parameters():
param.requires_grad = False
def unfreeze(self):
for param in self.parameters():
param.requires_grad = True
@property
@data_loader
def tng_dataloader(self):
"""
Implement a function to load an h5py of this data
@@ -109,7 +71,7 @@ class LightningModule(GradInformation, ModelIO, OptimizerConfig, ModelHooks):
"""
raise NotImplementedError
@property
@data_loader
def test_dataloader(self):
"""
Implement a function to load an h5py of this data
@@ -117,7 +79,7 @@ class LightningModule(GradInformation, ModelIO, OptimizerConfig, ModelHooks):
"""
raise NotImplementedError
@property
@data_loader
def val_dataloader(self):
"""
Implement a function to load an h5py of this data
@@ -125,16 +87,6 @@ class LightningModule(GradInformation, ModelIO, OptimizerConfig, ModelHooks):
"""
raise NotImplementedError
@staticmethod
def get_process_position(gpus):
try:
current_gpu = os.environ["CUDA_VISIBLE_DEVICES"]
gpu_ids = gpus.split(',')
process_position = gpu_ids.index(current_gpu)
return process_position, current_gpu
except Exception as e:
return 0, 0
@classmethod
def load_from_metrics(cls, weights_path, tags_csv, on_gpu, map_location=None):
"""
@@ -156,9 +108,26 @@ class LightningModule(GradInformation, ModelIO, OptimizerConfig, ModelHooks):
else:
checkpoint = torch.load(weights_path, map_location=lambda storage, loc: storage)
# load the state_dict on the model automatically
model = cls(hparams)
model.load_state_dict(checkpoint['state_dict'])
# give model a chance to load something
model.on_load_checkpoint(checkpoint)
# allow model to load
model.load_model_specific(checkpoint)
model.load_state_dict(checkpoint['state_dict'], strict=False)
return model
def summarize(self):
model_summary = ModelSummary(self)
print(model_summary)
def freeze(self):
for param in self.parameters():
param.requires_grad = False
def unfreeze(self):
for param in self.parameters():
param.requires_grad = True
@@ -0,0 +1,253 @@
import os
from collections import OrderedDict
import torch.nn as nn
from torchvision.datasets import MNIST
import torchvision.transforms as transforms
import torch
import torch.nn.functional as F
from test_tube import HyperOptArgumentParser
from torch import optim
from torch.utils.data import DataLoader
from torch.utils.data.distributed import DistributedSampler
from pytorch_lightning.root_module.root_module import LightningModule
import pytorch_lightning as ptl
class LightningTestModel(LightningModule):
"""
Sample model to show how to define a template
"""
def __init__(self, hparams, force_remove_distributed_sampler=False):
"""
Pass in parsed HyperOptArgumentParser to the model
:param hparams:
"""
# init superclass
super(LightningTestModel, self).__init__()
self.hparams = hparams
self.batch_size = hparams.batch_size
# if you specify an example input, the summary will show input/output for each layer
self.example_input_array = torch.rand(5, 28 * 28)
# remove to test warning for dist sampler
self.force_remove_distributed_sampler = force_remove_distributed_sampler
# build model
self.__build_model()
# ---------------------
# MODEL SETUP
# ---------------------
def __build_model(self):
"""
Layout model
:return:
"""
self.c_d1 = nn.Linear(in_features=self.hparams.in_features, out_features=self.hparams.hidden_dim)
self.c_d1_bn = nn.BatchNorm1d(self.hparams.hidden_dim)
self.c_d1_drop = nn.Dropout(self.hparams.drop_prob)
self.c_d2 = nn.Linear(in_features=self.hparams.hidden_dim, out_features=self.hparams.out_features)
# ---------------------
# TRAINING
# ---------------------
def forward(self, x):
"""
No special modification required for lightning, define as you normally would
:param x:
:return:
"""
x = self.c_d1(x)
x = torch.tanh(x)
x = self.c_d1_bn(x)
x = self.c_d1_drop(x)
x = self.c_d2(x)
logits = F.log_softmax(x, dim=1)
return logits
def loss(self, labels, logits):
nll = F.nll_loss(logits, labels)
return nll
def training_step(self, data_batch, batch_i):
"""
Lightning calls this inside the training loop
:param data_batch:
:return:
"""
# forward pass
x, y = data_batch
x = x.view(x.size(0), -1)
y_hat = self.forward(x)
# calculate loss
loss_val = self.loss(y, y_hat)
# in DP mode (default) make sure if result is scalar, there's another dim in the beginning
if self.trainer.use_dp:
loss_val = loss_val.unsqueeze(0)
output = OrderedDict({
'loss': loss_val
})
# can also return just a scalar instead of a dict (return loss_val)
return output
def validation_step(self, data_batch, batch_i):
"""
Lightning calls this inside the validation loop
:param data_batch:
:return:
"""
x, y = data_batch
x = x.view(x.size(0), -1)
y_hat = self.forward(x)
loss_val = self.loss(y, y_hat)
# acc
labels_hat = torch.argmax(y_hat, dim=1)
val_acc = torch.sum(y == labels_hat).item() / (len(y) * 1.0)
val_acc = torch.tensor(val_acc)
if self.on_gpu:
val_acc = val_acc.cuda(loss_val.device.index)
# in DP mode (default) make sure if result is scalar, there's another dim in the beginning
if self.trainer.use_dp:
loss_val = loss_val.unsqueeze(0)
val_acc = val_acc.unsqueeze(0)
# alternate possible outputs to test
if self.trainer.batch_nb % 1 == 0:
output = OrderedDict({
'val_loss': loss_val,
'val_acc': val_acc,
})
return output
if self.trainer.batch_nb % 2 == 0:
return val_acc
if self.trainer.batch_nb % 3 == 0:
output = OrderedDict({
'val_loss': loss_val,
'val_acc': val_acc,
'test_dic': {'val_loss_a': loss_val}
})
return output
def validation_end(self, outputs):
"""
Called at the end of validation to aggregate outputs
:param outputs: list of individual outputs of each validation step
:return:
"""
# if returned a scalar from validation_step, outputs is a list of tensor scalars
# we return just the average in this case (if we want)
# return torch.stack(outputs).mean()
val_loss_mean = 0
val_acc_mean = 0
for output in outputs:
val_loss_mean += output['val_loss']
val_acc_mean += output['val_acc']
val_loss_mean /= len(outputs)
val_acc_mean /= len(outputs)
tqdm_dic = {'val_loss': val_loss_mean.item(), 'val_acc': val_acc_mean.item()}
return tqdm_dic
def on_tng_metrics(self, logs):
logs['some_tensor_to_test'] = torch.rand(1)
# ---------------------
# TRAINING SETUP
# ---------------------
def configure_optimizers(self):
"""
return whatever optimizers we want here
:return: list of optimizers
"""
optimizer = optim.Adam(self.parameters(), lr=self.hparams.learning_rate)
return [optimizer]
def __dataloader(self, train):
# init data generators
transform = transforms.Compose([transforms.ToTensor(), transforms.Normalize((0.5,), (1.0,))])
dataset = MNIST(root=self.hparams.data_root, train=train, transform=transform, download=True)
# when using multi-node we need to add the datasampler
train_sampler = None
batch_size = self.hparams.batch_size
try:
if self.on_gpu and not self.force_remove_distributed_sampler:
train_sampler = DistributedSampler(dataset, rank=self.trainer.proc_rank)
batch_size = batch_size // self.trainer.world_size # scale batch size
except Exception as e:
pass
should_shuffle = train_sampler is None
loader = DataLoader(
dataset=dataset,
batch_size=batch_size,
shuffle=should_shuffle,
sampler=train_sampler
)
return loader
@ptl.data_loader
def tng_dataloader(self):
return self.__dataloader(train=True)
@ptl.data_loader
def val_dataloader(self):
return self.__dataloader(train=False)
@ptl.data_loader
def test_dataloader(self):
return self.__dataloader(train=False)
@staticmethod
def add_model_specific_args(parent_parser, root_dir):
"""
Parameters you define here will be available to your model through self.hparams
:param parent_parser:
:param root_dir:
:return:
"""
parser = HyperOptArgumentParser(strategy=parent_parser.strategy, parents=[parent_parser])
# param overwrites
# parser.set_defaults(gradient_clip=5.0)
# network params
parser.opt_list('--drop_prob', default=0.2, options=[0.2, 0.5], type=float, tunable=False)
parser.add_argument('--in_features', default=28*28, type=int)
parser.add_argument('--out_features', default=10, type=int)
parser.add_argument('--hidden_dim', default=50000, type=int) # use 500 for CPU, 50000 for GPU to see speed difference
# data
parser.add_argument('--data_root', default=os.path.join(root_dir, 'mnist'), type=str)
# training params (opt)
parser.opt_list('--learning_rate', default=0.001*8, type=float, options=[0.0001, 0.0005, 0.001, 0.005],
tunable=False)
parser.opt_list('--optimizer_name', default='adam', type=str, options=['adam'], tunable=False)
# if using 2 nodes with 4 gpus each the batch size here (256) will be 256 / (2*8) = 16 per gpu
parser.opt_list('--batch_size', default=256*8, type=int, options=[32, 64, 128, 256], tunable=False,
help='batch size will be divided over all the gpus being used across all nodes')
return parser
-4
View File
@@ -52,10 +52,6 @@ def main(hparams, cluster, results_dict):
hparams.__setattr__('nb_gpus', torch.cuda.device_count())
hparams.__setattr__('inference_mode', hparams.model_load_weights_path is not None)
# delay each training start to not overwrite logs
process_position, current_gpu = TRAINING_MODEL.get_process_position(hparams.gpus)
sleep(process_position + 1)
# init experiment
exp = Experiment(
name=hparams.tt_name,
+5
View File
@@ -0,0 +1,5 @@
import pdb
import sys
class MisconfigurationException(Exception):
pass
-104
View File
@@ -1,104 +0,0 @@
import torch
import numpy as np
from copy import deepcopy
class PretrainedEmbedding(torch.nn.Embedding):
def __init__(self, embedding_path, embedding_dim, task_vocab, freeze=True, *args, **kwargs):
"""
Loads a prebuilt pytorch embedding from any embedding formated file.
Padding=0 by default.
>>> emb = PretrainedEmbedding(embedding_path='glove.840B.300d.txt',embedding_dim=300, task_vocab={'hello': 1, 'world': 2})
>>> data = torch.Tensor([[0, 1], [0, 2]]).long()
>>> embedded = emb(data)
:param embedding_path:
:param emb_dim:
:param task_vocab:
:param freeze:
:return:
"""
# count the vocab
self.vocab_size = max(task_vocab.values()) + 1
super(PretrainedEmbedding, self).__init__(self.vocab_size, embedding_dim, padding_idx=0, *args, **kwargs)
# load pretrained embeddings
new_emb = self.__load_task_specific_embeddings(deepcopy(task_vocab), embedding_path, embedding_dim, freeze)
# transfer weights
self.weight = new_emb.weight
# apply freeze
should_freeze = not freeze
self.weight.requires_grad = should_freeze
def __load_task_specific_embeddings(self, vocab_words, embedding_path, emb_dim, freeze):
"""
Iterates embedding file to only pull out task specific embeddings
:param vocab_words:
:param embedding_path:
:param emb_dim:
:param freeze:
:return:
"""
# holds final embeddings for relevant words
embeddings = np.zeros(shape=(self.vocab_size, emb_dim))
# load embedding line by line and extract relevant embeddings
with open(embedding_path, encoding='utf-8') as f:
for line in f:
tokens = line.split(' ')
word = tokens[0]
embedding = tokens[1:]
embedding[-1] = embedding[-1][:-1] # remove last new line
if word in vocab_words:
vocab_word_i = vocab_words[word]
# skip words that try to overwrite pad idx
if vocab_word_i == 0:
del vocab_words[word]
continue
emb_vals = np.asarray([float(x) for x in embedding])
embeddings[vocab_word_i] = emb_vals
# remove vocab word to early terminate
del vocab_words[word]
# early break
if len(vocab_words) == 0:
break
# add random vectors for the non-pretrained words
# these are vocab words NOT found in the pretrained embeddings
for w, i in vocab_words.items():
# skip words that try to overwrite pad idx
if i == 0:
continue
embedding = np.random.normal(size=emb_dim)
embeddings[i] = embedding
# turn into pt embedding
embeddings = torch.FloatTensor(embeddings)
embeddings = torch.nn.Embedding.from_pretrained(embeddings, freeze=freeze)
return embeddings
if __name__ == '__main__':
emb = PretrainedEmbedding(
embedding_path='/Users/waf/Developer',
embedding_dim=300,
task_vocab={'hello': 1, 'world': 2}
)
data = torch.Tensor([[0, 1], [0, 2]]).long()
embedded = emb(data)
print(embedded)
-28
View File
@@ -1,28 +0,0 @@
import numpy as np
np.seterr(divide='ignore', invalid='ignore')
def plot_confusion_matrix(cm,
save_path,
normalize=False,
title='Confusion matrix',
ylabel='y',
xlabel='x'):
"""
This function prints and plots the confusion matrix.
Normalization can be applied by setting `normalize=True`.
"""
from matplotlib import pyplot as plt
if normalize:
cm = cm.astype('float') / cm.sum(axis=1)[:, np.newaxis]
print("Normalized confusion matrix")
else:
print('Confusion matrix, without normalization')
fig = plt.figure()
plt.matshow(cm)
plt.title(title)
plt.colorbar()
plt.ylabel(ylabel)
plt.xlabel(xlabel)
plt.savefig(save_path)
+6 -32
View File
@@ -1,35 +1,9 @@
atomicwrites==1.2.1
attrs==18.2.0
certifi==2018.11.29
cffi==1.11.5
imageio==2.4.1
mkl-fft==1.0.6
mkl-random==1.0.2
more-itertools==5.0.0
numpy==1.15.4
olefile==0.46
pandas==0.23.4
Pillow==5.3.0
pluggy==0.8.0
py==1.7.0
pycparser==2.19
pytest==4.0.2
python-dateutil==2.7.5
pytz==2018.7
coverage==4.5.3
mkdocs==1.0.4
pytest==5.0.1
scikit-learn==0.20.2
scipy==1.2.0
six==1.12.0
sklearn==0.0
tensorboard==1.14.0
tensorboardX==1.7
tensorflow==1.14.0
test-tube==0.643
torch==1.0.0
torchvision==0.2.1
tqdm==4.32.1
twine==1.13.0
urllib3==1.25.3
webencodings==0.5.1
Werkzeug==0.15.4
wrapt==1.11.2
numpy==1.16.4
torch>=1.1.0
torchvision==0.3.0
+27
View File
@@ -16,6 +16,33 @@ markers =
ignore = E731,W504
max-line-length = 120
[coverage:report]
exclude_lines =
pragma: no cover
def __repr__
if self.debug:
if settings.DEBUG
raise AssertionError
raise NotImplementedError
if 0:
if __name__ == .__main__.:
except Exception as e
print(e)
print(traceback.print_exc())
return *
raise Exception
warnings
print
raise RuntimeError
break
pass
os.makedirs
omit =
pytorch_lightning/callbacks/pt_callbacks.py
tests/test_models.py
pytorch_lightning/testing_models/lm_test_module.py
[flake8]
ignore = E731,W504,F401,F841
max-line-length = 120
+2 -2
View File
@@ -7,7 +7,7 @@ from setuptools import setup, find_packages
# http://blog.ionelmc.ro/2014/05/25/python-packaging/
setup(
name="pytorch-lightning",
version='0.3.4.1',
version='0.3.6.4',
description="The Keras for ML researchers using PyTorch",
author="William Falcon",
author_email="waf2107@columbia.edu",
@@ -19,7 +19,7 @@ setup(
install_requires=[
"torch>=1.1.0",
"tqdm",
"test-tube>=0.6.7.1",
"test-tube>=0.6.7.4",
],
packages=find_packages(),
long_description=open("README.md", encoding="utf-8").read(),
+58
View File
@@ -0,0 +1,58 @@
# Pytorch-Lightning Tests
## Running tests
The automatic travis tests ONLY run CPU-based tests. Although these cover most of the use cases,
run on a 2-GPU machine to validate the full test-suite.
To run all tests do the following:
```bash
git clone https://github.com/williamFalcon/pytorch-lightning
cd pytorch-lightning
# install module locally
pip install -e .
# install dev deps
pip install -r requirements.txt
# run tests
py.test
```
To test models that require GPU make sure to run the above command on a GPU machine.
The GPU machine must have:
1. At least 2 GPUs.
2. [NVIDIA-apex](https://github.com/NVIDIA/apex#linux) installed.
### test_models.py
This file fits a tiny model on MNIST using these different set-ups.
1. CPU only.
2. Single GPU with DP.
3. Multiple (2) GPUs using DP.
3. Multiple (2) GPUs using DDP.
3. Multiple (2) GPUs using DP + apex (for 16-bit precision).
3. Multiple (2) GPUs using DDP + apex (for 16-bit precision).
For each set up it also tests:
1. model saving.
2. model loading.
3. predicting with a loaded model.
4. simulated save from HPC signal.
5. simulated load from HPC signal.
## Running Coverage
```bash
cd pytorch-lightning
# generate coverage
pip install coverage
coverage run tests/test_models.py
# print coverage stats
coverage report -m
```
View File
+180
View File
@@ -0,0 +1,180 @@
import pytest
from pytorch_lightning import Trainer
from pytorch_lightning.examples.new_project_templates.lightning_module_template import LightningTemplateModel
from argparse import Namespace
from test_tube import Experiment
from pytorch_lightning.callbacks import ModelCheckpoint
import numpy as np
import warnings
import torch
import os
import shutil
import pdb
import pytorch_lightning as ptl
import torch
from torch.nn import functional as F
from torch.utils.data import DataLoader
from torchvision.datasets import MNIST
class CoolModel(ptl.LightningModule):
def __init(self):
super(CoolModel, self).__init__()
# not the best model...
self.l1 = torch.nn.Linear(28 * 28, 10)
def forward(self, x):
return torch.relu(self.l1(x))
def my_loss(self, y_hat, y):
return F.cross_entropy(y_hat, y)
def training_step(self, batch, batch_nb):
x, y = batch
y_hat = self.forward(x)
return {'tng_loss': self.my_loss(y_hat, y)}
def validation_step(self, batch, batch_nb):
x, y = batch
y_hat = self.forward(x)
return {'val_loss': self.my_loss(y_hat, y)}
def validation_end(self, outputs):
avg_loss = torch.stack([x for x in outputs['val_loss']]).mean()
return avg_loss
def configure_optimizers(self):
return [torch.optim.Adam(self.parameters(), lr=0.02)]
@ptl.data_loader
def tng_dataloader(self):
return DataLoader(MNIST('path/to/save', train=True), batch_size=32)
@ptl.data_loader
def val_dataloader(self):
return DataLoader(MNIST('path/to/save', train=False), batch_size=32)
@ptl.data_loader
def test_dataloader(self):
return DataLoader(MNIST('path/to/save', train=False), batch_size=32)
def get_model():
# set up model with these hyperparams
root_dir = os.path.dirname(os.path.realpath(__file__))
hparams = Namespace(**{'drop_prob': 0.2,
'batch_size': 32,
'in_features': 28*28,
'learning_rate': 0.001*8,
'optimizer_name': 'adam',
'data_root': os.path.join(root_dir, 'mnist'),
'out_features': 10,
'hidden_dim': 1000})
model = LightningTemplateModel(hparams)
return model, hparams
def get_exp(debug=True):
# set up exp object without actually saving logs
root_dir = os.path.dirname(os.path.realpath(__file__))
exp = Experiment(debug=debug, save_dir=root_dir, name='tests_tt_dir')
return exp
def init_save_dir():
root_dir = os.path.dirname(os.path.realpath(__file__))
save_dir = os.path.join(root_dir, 'save_dir')
if os.path.exists(save_dir):
shutil.rmtree(save_dir)
os.makedirs(save_dir, exist_ok=True)
return save_dir
def clear_save_dir():
root_dir = os.path.dirname(os.path.realpath(__file__))
save_dir = os.path.join(root_dir, 'save_dir')
if os.path.exists(save_dir):
shutil.rmtree(save_dir)
def load_model(exp, save_dir):
# load trained model
tags_path = exp.get_data_path(exp.name, exp.version)
tags_path = os.path.join(tags_path, 'meta_tags.csv')
checkpoints = [x for x in os.listdir(save_dir) if '.ckpt' in x]
weights_dir = os.path.join(save_dir, checkpoints[0])
trained_model = LightningTemplateModel.load_from_metrics(weights_path=weights_dir, tags_csv=tags_path, on_gpu=True)
assert trained_model is not None, 'loading model failed'
return trained_model
def run_prediction(dataloader, trained_model):
# run prediction on 1 batch
for batch in dataloader:
break
x, y = batch
x = x.view(x.size(0), -1)
y_hat = trained_model(x)
# acc
labels_hat = torch.argmax(y_hat, dim=1)
val_acc = torch.sum(y == labels_hat).item() / (len(y) * 1.0)
val_acc = torch.tensor(val_acc)
val_acc = val_acc.item()
print(val_acc)
assert val_acc > 0.70, f'this model is expected to get > 0.7 in test set (it got {val_acc})'
def main():
save_dir = init_save_dir()
# exp file to get meta
exp = get_exp(False)
exp.save()
# exp file to get weights
checkpoint = ModelCheckpoint(save_dir)
trainer = Trainer(
experiment=exp,
checkpoint_callback=checkpoint,
progress_bar=True,
max_nb_epochs=1,
gpus=[0, 1],
distributed_backend='dp',
)
model = CoolModel()
result = trainer.fit(model)
# correct result and ok accuracy
assert result == 1, 'amp + ddp model failed to complete'
# test model loading
pretrained_model = load_model(exp, save_dir)
# test model preds
run_prediction(model.test_dataloader, pretrained_model)
clear_save_dir()
if __name__ == '__main__':
main()
+688
View File
@@ -0,0 +1,688 @@
import pytest
from pytorch_lightning import Trainer
from pytorch_lightning.examples.new_project_templates.lightning_module_template import LightningTemplateModel
from pytorch_lightning.testing_models.lm_test_module import LightningTestModel
from argparse import Namespace
from test_tube import Experiment, SlurmCluster
from pytorch_lightning.callbacks import ModelCheckpoint, EarlyStopping
from pytorch_lightning.utils.debugging import MisconfigurationException
from pytorch_lightning.root_module import memory
from pytorch_lightning.models.trainer import reduce_distributed_output
from pytorch_lightning.root_module import model_saving
import numpy as np
import warnings
import torch
import os
import shutil
import pdb
SEED = 2334
torch.manual_seed(SEED)
np.random.seed(SEED)
# ------------------------------------------------------------------------
# TESTS
# ------------------------------------------------------------------------
def test_cpu_slurm_save_load():
"""
Verify model save/load/checkpoint on CPU
:return:
"""
hparams = get_hparams()
model = LightningTestModel(hparams)
save_dir = init_save_dir()
# exp file to get meta
exp = get_exp(False)
exp.argparse(hparams)
exp.save()
cluster_a = SlurmCluster()
trainer_options = dict(
max_nb_epochs=1,
cluster=cluster_a,
experiment=exp,
checkpoint_callback=ModelCheckpoint(save_dir)
)
# fit model
trainer = Trainer(**trainer_options)
result = trainer.fit(model)
real_global_step = trainer.global_step
# traning complete
assert result == 1, 'amp + ddp model failed to complete'
# predict with trained model before saving
# make a prediction
for batch in model.test_dataloader:
break
x, y = batch
x = x.view(x.size(0), -1)
model.eval()
pred_before_saving = model(x)
# test registering a save function
trainer.enable_auto_hpc_walltime_manager()
# test HPC saving
# simulate snapshot on slurm
saved_filepath = trainer.hpc_save(save_dir, exp)
assert os.path.exists(saved_filepath)
# wipe-out trainer and model
# retrain with not much data... this simulates picking training back up after slurm
# we want to see if the weights come back correctly
continue_tng_hparams = get_hparams(continue_training=True, hpc_exp_number=cluster_a.hpc_exp_number)
trainer_options = dict(
max_nb_epochs=1,
cluster=SlurmCluster(continue_tng_hparams),
experiment=exp,
checkpoint_callback=ModelCheckpoint(save_dir),
)
trainer = Trainer(**trainer_options)
model = LightningTestModel(hparams)
# set the epoch start hook so we can predict before the model does the full training
def assert_pred_same():
assert trainer.global_step == real_global_step and trainer.global_step > 0
# predict with loaded model to make sure answers are the same
trainer.model.eval()
new_pred = trainer.model(x)
assert torch.all(torch.eq(pred_before_saving, new_pred)).item() == 1
model.on_epoch_start = assert_pred_same
# by calling fit again, we trigger training, loading weights from the cluster
# and our hook to predict using current model before any more weight updates
trainer.fit(model)
clear_save_dir()
def test_loading_meta_tags():
hparams = get_hparams()
save_dir = init_save_dir()
# save tags
exp = get_exp(False)
exp.tag({'some_str':'a_str', 'an_int': 1, 'a_float': 2.0})
exp.argparse(hparams)
exp.save()
# load tags
tags_path = exp.get_data_path(exp.name, exp.version) + '/meta_tags.csv'
tags = model_saving.load_hparams_from_tags_csv(tags_path)
assert tags.batch_size == 32 and tags.hidden_dim == 1000
clear_save_dir()
def test_dp_output_reduce():
# test identity when we have a single gpu
out = torch.rand(3, 1)
assert reduce_distributed_output(out, nb_gpus=1) is out
# average when we have multiples
assert reduce_distributed_output(out, nb_gpus=2) == out.mean()
# when we have a dict of vals
out = {
'a': out,
'b': {
'c': out
}
}
reduced = reduce_distributed_output(out, nb_gpus=3)
assert reduced['a'] == out['a']
assert reduced['b']['c'] == out['b']['c']
def test_model_saving_loading():
"""
Tests use case where trainer saves the model, and user loads it from tags independently
:return:
"""
hparams = get_hparams()
model = LightningTestModel(hparams)
save_dir = init_save_dir()
# exp file to get meta
exp = get_exp(False)
exp.argparse(hparams)
exp.save()
trainer_options = dict(
max_nb_epochs=1,
cluster=SlurmCluster(),
experiment=exp,
checkpoint_callback=ModelCheckpoint(save_dir)
)
# fit model
trainer = Trainer(**trainer_options)
result = trainer.fit(model)
# traning complete
assert result == 1, 'amp + ddp model failed to complete'
# make a prediction
for batch in model.test_dataloader:
break
x, y = batch
x = x.view(x.size(0), -1)
# generate preds before saving model
model.eval()
pred_before_saving = model(x)
# save model
new_weights_path = os.path.join(save_dir, 'save_test.ckpt')
trainer.save_checkpoint(new_weights_path)
# load new model
tags_path = exp.get_data_path(exp.name, exp.version)
tags_path = os.path.join(tags_path, 'meta_tags.csv')
model_2 = LightningTestModel.load_from_metrics(weights_path=new_weights_path, tags_csv=tags_path, on_gpu=False)
model_2.eval()
# make prediction
# assert that both predictions are the same
new_pred = model_2(x)
assert torch.all(torch.eq(pred_before_saving, new_pred)).item() == 1
clear_save_dir()
def test_model_freeze_unfreeze():
hparams = get_hparams()
model = LightningTestModel(hparams)
model.freeze()
model.unfreeze()
def test_amp_gpu_ddp_slurm_managed():
"""
Make sure DDP + AMP work
:return:
"""
if not torch.cuda.is_available():
warnings.warn('test_amp_gpu_ddp cannot run. Rerun on a GPU node to run this test')
return
if not torch.cuda.device_count() > 1:
warnings.warn('test_amp_gpu_ddp cannot run. Rerun on a node with 2+ GPUs to run this test')
return
# simulate setting slurm flags
os.environ['MASTER_PORT'] = str(np.random.randint(12000, 19000, 1)[0])
os.environ['SLURM_LOCALID'] = str(0)
hparams = get_hparams()
model = LightningTestModel(hparams)
trainer_options = dict(
progress_bar=True,
max_nb_epochs=1,
gpus=[0],
distributed_backend='ddp',
use_amp=True
)
save_dir = init_save_dir()
# exp file to get meta
exp = get_exp(False)
exp.argparse(hparams)
exp.save()
# exp file to get weights
checkpoint = ModelCheckpoint(save_dir)
# add these to the trainer options
trainer_options['checkpoint_callback'] = checkpoint
trainer_options['experiment'] = exp
# fit model
trainer = Trainer(**trainer_options)
trainer.is_slurm_managing_tasks = True
result = trainer.fit(model)
# correct result and ok accuracy
assert result == 1, 'amp + ddp model failed to complete'
# test root model address
assert trainer.resolve_root_node_address('abc') == 'abc'
assert trainer.resolve_root_node_address('abc[23]') == 'abc23'
assert trainer.resolve_root_node_address('abc[23-24]') == 'abc23'
assert trainer.resolve_root_node_address('abc[23-24, 45-40, 40]') == 'abc23'
# test model loading with a map_location
map_location = 'cuda:1'
pretrained_model = load_model(exp, save_dir, True, map_location)
# test model preds
run_prediction(model.test_dataloader, pretrained_model)
if trainer.use_ddp:
# on hpc this would work fine... but need to hack it for the purpose of the test
trainer.model = pretrained_model
trainer.optimizers = pretrained_model.configure_optimizers()
# test HPC loading / saving
trainer.hpc_save(save_dir, exp)
trainer.hpc_load(save_dir, on_gpu=True)
# test freeze on gpu
model.freeze()
model.unfreeze()
clear_save_dir()
def test_early_stopping_cpu_model():
"""
Test each of the trainer options
:return:
"""
stopping = EarlyStopping()
trainer_options = dict(
early_stop_callback=stopping,
gradient_clip=1.0,
overfit_pct=0.20,
track_grad_norm=2,
print_nan_grads=True,
progress_bar=False,
experiment=get_exp(),
train_percent_check=0.1,
val_percent_check=0.1
)
model, hparams = get_model()
run_gpu_model_test(trainer_options, model, hparams, on_gpu=False)
# test freeze on cpu
model.freeze()
model.unfreeze()
def test_cpu_model_with_amp():
"""
Make sure model trains on CPU
:return:
"""
trainer_options = dict(
progress_bar=False,
experiment=get_exp(),
max_nb_epochs=1,
train_percent_check=0.4,
val_percent_check=0.4,
use_amp=True
)
model, hparams = get_model()
with pytest.raises((MisconfigurationException, ModuleNotFoundError)):
run_gpu_model_test(trainer_options, model, hparams, on_gpu=False)
def test_cpu_model():
"""
Make sure model trains on CPU
:return:
"""
trainer_options = dict(
progress_bar=False,
experiment=get_exp(),
max_nb_epochs=1,
train_percent_check=0.4,
val_percent_check=0.4
)
model, hparams = get_model()
run_gpu_model_test(trainer_options, model, hparams, on_gpu=False)
def test_all_features_cpu_model():
"""
Test each of the trainer options
:return:
"""
trainer_options = dict(
gradient_clip=1.0,
overfit_pct=0.20,
track_grad_norm=2,
print_nan_grads=True,
progress_bar=False,
experiment=get_exp(),
max_nb_epochs=1,
train_percent_check=0.4,
val_percent_check=0.4
)
model, hparams = get_model()
run_gpu_model_test(trainer_options, model, hparams, on_gpu=False)
def test_single_gpu_model():
"""
Make sure single GPU works (DP mode)
:return:
"""
if not torch.cuda.is_available():
warnings.warn('test_single_gpu_model cannot run. Rerun on a GPU node to run this test')
return
model, hparams = get_model()
trainer_options = dict(
progress_bar=False,
max_nb_epochs=1,
train_percent_check=0.1,
val_percent_check=0.1,
gpus=[0]
)
run_gpu_model_test(trainer_options, model, hparams)
def test_multi_gpu_model_dp():
"""
Make sure DP works
:return:
"""
if not torch.cuda.is_available():
warnings.warn('test_multi_gpu_model_dp cannot run. Rerun on a GPU node to run this test')
return
if not torch.cuda.device_count() > 1:
warnings.warn('test_multi_gpu_model_dp cannot run. Rerun on a node with 2+ GPUs to run this test')
return
model, hparams = get_model()
trainer_options = dict(
progress_bar=False,
max_nb_epochs=1,
train_percent_check=0.1,
val_percent_check=0.1,
gpus='-1'
)
run_gpu_model_test(trainer_options, model, hparams)
# test memory helper functions
memory.get_gpu_memory_map()
def test_amp_gpu_dp():
"""
Make sure DP + AMP work
:return:
"""
if not torch.cuda.is_available():
warnings.warn('test_amp_gpu_dp cannot run. Rerun on a GPU node to run this test')
return
if not torch.cuda.device_count() > 1:
warnings.warn('test_amp_gpu_dp cannot run. Rerun on a node with 2+ GPUs to run this test')
return
model, hparams = get_model()
trainer_options = dict(
max_nb_epochs=1,
gpus='0, 1', # test init with gpu string
distributed_backend='dp',
use_amp=True
)
with pytest.raises(MisconfigurationException):
run_gpu_model_test(trainer_options, model, hparams)
def test_multi_gpu_model_ddp():
"""
Make sure DDP works
:return:
"""
if not torch.cuda.is_available():
warnings.warn('test_multi_gpu_model_ddp cannot run. Rerun on a GPU node to run this test')
return
if not torch.cuda.device_count() > 1:
warnings.warn('test_multi_gpu_model_ddp cannot run. Rerun on a node with 2+ GPUs to run this test')
return
os.environ['MASTER_PORT'] = str(np.random.randint(12000, 19000, 1)[0])
model, hparams = get_model()
trainer_options = dict(
progress_bar=False,
max_nb_epochs=1,
train_percent_check=0.4,
val_percent_check=0.2,
gpus=[0, 1],
distributed_backend='ddp'
)
run_gpu_model_test(trainer_options, model, hparams)
def test_amp_gpu_ddp():
"""
Make sure DDP + AMP work
:return:
"""
if not torch.cuda.is_available():
warnings.warn('test_amp_gpu_ddp cannot run. Rerun on a GPU node to run this test')
return
if not torch.cuda.device_count() > 1:
warnings.warn('test_amp_gpu_ddp cannot run. Rerun on a node with 2+ GPUs to run this test')
return
os.environ['MASTER_PORT'] = str(np.random.randint(12000, 19000, 1)[0])
hparams = get_hparams()
model = LightningTestModel(hparams)
trainer_options = dict(
progress_bar=True,
max_nb_epochs=1,
gpus=[0, 1],
distributed_backend='ddp',
use_amp=True
)
run_gpu_model_test(trainer_options, model, hparams)
def test_ddp_sampler_error():
"""
Make sure DDP + AMP work
:return:
"""
if not torch.cuda.is_available():
warnings.warn('test_amp_gpu_ddp cannot run. Rerun on a GPU node to run this test')
return
if not torch.cuda.device_count() > 1:
warnings.warn('test_amp_gpu_ddp cannot run. Rerun on a node with 2+ GPUs to run this test')
return
os.environ['MASTER_PORT'] = str(np.random.randint(12000, 19000, 1)[0])
hparams = get_hparams()
model = LightningTestModel(hparams, force_remove_distributed_sampler=True)
exp = get_exp(True)
exp.save()
trainer = Trainer(
experiment=exp,
progress_bar=False,
max_nb_epochs=1,
gpus=[0, 1],
distributed_backend='ddp',
use_amp=True
)
with pytest.raises(MisconfigurationException):
trainer.get_dataloaders(model)
clear_save_dir()
# ------------------------------------------------------------------------
# UTILS
# ------------------------------------------------------------------------
def run_gpu_model_test(trainer_options, model, hparams, on_gpu=True):
save_dir = init_save_dir()
# exp file to get meta
exp = get_exp(False)
exp.argparse(hparams)
exp.save()
# exp file to get weights
checkpoint = ModelCheckpoint(save_dir)
# add these to the trainer options
trainer_options['checkpoint_callback'] = checkpoint
trainer_options['experiment'] = exp
# fit model
trainer = Trainer(**trainer_options)
result = trainer.fit(model)
# correct result and ok accuracy
assert result == 1, 'amp + ddp model failed to complete'
# test model loading
pretrained_model = load_model(exp, save_dir, on_gpu)
# test model preds
run_prediction(model.test_dataloader, pretrained_model)
if trainer.use_ddp:
# on hpc this would work fine... but need to hack it for the purpose of the test
trainer.model = pretrained_model
trainer.optimizers = pretrained_model.configure_optimizers()
# test HPC loading / saving
trainer.hpc_save(save_dir, exp)
trainer.hpc_load(save_dir, on_gpu=on_gpu)
clear_save_dir()
def get_hparams(continue_training=False, hpc_exp_number=0):
root_dir = os.path.dirname(os.path.realpath(__file__))
args = {
'drop_prob': 0.2,
'batch_size': 32,
'in_features': 28*28,
'learning_rate': 0.001*8,
'optimizer_name': 'adam',
'data_root': os.path.join(root_dir, 'mnist'),
'out_features': 10,
'hidden_dim': 1000}
if continue_training:
args['test_tube_do_checkpoint_load'] = True
args['hpc_exp_number'] = hpc_exp_number
hparams = Namespace(**args)
return hparams
def get_model():
# set up model with these hyperparams
hparams = get_hparams()
model = LightningTemplateModel(hparams)
return model, hparams
def get_exp(debug=True):
# set up exp object without actually saving logs
root_dir = os.path.dirname(os.path.realpath(__file__))
exp = Experiment(debug=debug, save_dir=root_dir, name='tests_tt_dir')
return exp
def init_save_dir():
root_dir = os.path.dirname(os.path.realpath(__file__))
save_dir = os.path.join(root_dir, 'save_dir')
if os.path.exists(save_dir):
shutil.rmtree(save_dir)
os.makedirs(save_dir, exist_ok=True)
return save_dir
def clear_save_dir():
root_dir = os.path.dirname(os.path.realpath(__file__))
save_dir = os.path.join(root_dir, 'save_dir')
if os.path.exists(save_dir):
shutil.rmtree(save_dir)
def load_model(exp, save_dir, on_gpu, map_location=None):
# load trained model
tags_path = exp.get_data_path(exp.name, exp.version)
tags_path = os.path.join(tags_path, 'meta_tags.csv')
checkpoints = [x for x in os.listdir(save_dir) if '.ckpt' in x]
weights_dir = os.path.join(save_dir, checkpoints[0])
trained_model = LightningTemplateModel.load_from_metrics(weights_path=weights_dir,
tags_csv=tags_path,
on_gpu=on_gpu,
map_location=map_location)
assert trained_model is not None, 'loading model failed'
return trained_model
def run_prediction(dataloader, trained_model):
# run prediction on 1 batch
for batch in dataloader:
break
x, y = batch
x = x.view(x.size(0), -1)
y_hat = trained_model(x)
# acc
labels_hat = torch.argmax(y_hat, dim=1)
val_acc = torch.sum(y == labels_hat).item() / (len(y) * 1.0)
val_acc = torch.tensor(val_acc)
val_acc = val_acc.item()
print(val_acc)
assert val_acc > 0.50, f'this model is expected to get > 0.50 in test set (it got {val_acc})'
def assert_ok_acc(trainer):
# this model should get 0.80+ acc
acc = trainer.tng_tqdm_dic['val_acc']
assert acc > 0.50, f'model failed to get expected 0.50 validation accuracy. Got: {acc}'
if __name__ == '__main__':
pytest.main([__file__])