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@@ -0,0 +1,5 @@
|
||||
# use this to run tests
|
||||
rm -rf tests/save_dir*
|
||||
rm -rf tests/mlruns_*
|
||||
coverage run --source pytorch_lightning -m py.test pytorch_lightning tests examples -v --doctest-modules
|
||||
coverage report -m
|
||||
@@ -17,6 +17,8 @@
|
||||
[](https://pytorch-lightning.readthedocs.io/en/latest)
|
||||
[](https://gitter.im/PyTorch-Lightning/community?utm_source=badge&utm_medium=badge&utm_campaign=pr-badge)
|
||||
[](https://github.com/williamFalcon/pytorch-lightning/blob/master/LICENSE)
|
||||
[](https://shields.io/)
|
||||
|
||||
<!--
|
||||
removed until codecov badge isn't empy. likely a config error showing nothing on master.
|
||||
[](https://codecov.io/gh/Borda/pytorch-lightning)
|
||||
@@ -50,9 +52,9 @@ Lightning sets up all the boilerplate state-of-the-art training for you so you c
|
||||
- [What lightning automates](https://github.com/williamFalcon/pytorch-lightning#what-does-lightning-control-for-me)
|
||||
- [Tensorboard integration](https://github.com/williamFalcon/pytorch-lightning#tensorboard)
|
||||
- [Lightning features](https://github.com/williamFalcon/pytorch-lightning#lightning-automates-all-of-the-following-each-is-also-configurable)
|
||||
- [Demos](https://github.com/williamFalcon/pytorch-lightning#demo)
|
||||
- [Examples](https://github.com/williamFalcon/pytorch-lightning#examples)
|
||||
- [Tutorials](https://github.com/williamFalcon/pytorch-lightning#tutorials)
|
||||
- [Contributing](https://github.com/williamFalcon/pytorch-lightning/blob/master/CONTRIBUTING.md)
|
||||
- [Contributing](https://github.com/williamFalcon/pytorch-lightning/blob/master/.github/CONTRIBUTING.md)
|
||||
- [Bleeding edge install](https://github.com/williamFalcon/pytorch-lightning#bleeding-edge)
|
||||
- [Lightning Design Principles](https://github.com/williamFalcon/pytorch-lightning#lightning-design-principles)
|
||||
- [Asking for help](https://github.com/williamFalcon/pytorch-lightning#asking-for-help)
|
||||
@@ -66,7 +68,9 @@ Think about Lightning as refactoring your research code instead of using a new f
|
||||
The LightningModule defines a *system* such as seq-2-seq, GAN, etc... It can ALSO define a simple classifier such as the example below.
|
||||
|
||||
To use lightning do 2 things:
|
||||
1. [Define a LightningModule](https://williamfalcon.github.io/pytorch-lightning/LightningModule/RequiredTrainerInterface/)
|
||||
1. [Define a LightningModule](https://williamfalcon.github.io/pytorch-lightning/LightningModule/RequiredTrainerInterface/)
|
||||
|
||||
**WARNING:** This syntax is for version 0.5.0+ where abbreviations were removed.
|
||||
```python
|
||||
import os
|
||||
import torch
|
||||
@@ -91,7 +95,9 @@ class CoolSystem(pl.LightningModule):
|
||||
# REQUIRED
|
||||
x, y = batch
|
||||
y_hat = self.forward(x)
|
||||
return {'loss': F.cross_entropy(y_hat, y)}
|
||||
loss = F.cross_entropy(y_hat, y)
|
||||
tensorboard_logs = {'train_loss': loss}
|
||||
return {'loss': loss, 'log': tensorboard_logs}
|
||||
|
||||
def validation_step(self, batch, batch_nb):
|
||||
# OPTIONAL
|
||||
@@ -102,15 +108,17 @@ class CoolSystem(pl.LightningModule):
|
||||
def validation_end(self, outputs):
|
||||
# OPTIONAL
|
||||
avg_loss = torch.stack([x['val_loss'] for x in outputs]).mean()
|
||||
return {'avg_val_loss': avg_loss}
|
||||
tensorboard_logs = {'val_loss': avg_loss}
|
||||
return {'avg_val_loss': avg_loss, 'log': tensorboard_logs}
|
||||
|
||||
def configure_optimizers(self):
|
||||
# REQUIRED
|
||||
# can return multiple optimizers and learning_rate schedulers
|
||||
# (LBFGS it is automatically supported, no need for closure function)
|
||||
return torch.optim.Adam(self.parameters(), lr=0.02)
|
||||
|
||||
@pl.data_loader
|
||||
def tng_dataloader(self):
|
||||
def train_dataloader(self):
|
||||
# REQUIRED
|
||||
return DataLoader(MNIST(os.getcwd(), train=True, download=True, transform=transforms.ToTensor()), batch_size=32)
|
||||
|
||||
@@ -135,27 +143,27 @@ trainer = Trainer()
|
||||
trainer.fit(model)
|
||||
```
|
||||
|
||||
Or with tensorboard logger and some options turned on such as multi-gpu, etc...
|
||||
Trainer sets up a tensorboard logger, early stopping and checkpointing by default (you can modify all of them or
|
||||
use something other than tensorboard).
|
||||
|
||||
Here are more advanced examples
|
||||
```python
|
||||
from test_tube import Experiment
|
||||
|
||||
# PyTorch summarywriter with a few bells and whistles
|
||||
exp = Experiment(save_dir=os.getcwd())
|
||||
|
||||
# train on cpu using only 10% of the data (for demo purposes)
|
||||
# pass in experiment for automatic tensorboard logging.
|
||||
trainer = Trainer(experiment=exp, max_nb_epochs=1, train_percent_check=0.1)
|
||||
trainer = Trainer(max_nb_epochs=1, train_percent_check=0.1)
|
||||
|
||||
# train on 4 gpus
|
||||
# trainer = Trainer(experiment=exp, max_nb_epochs=1, gpus=[0, 1, 2, 3])
|
||||
# train on 4 gpus (lightning chooses GPUs for you)
|
||||
# trainer = Trainer(max_nb_epochs=1, gpus=4, distributed_backend='ddp')
|
||||
|
||||
# train on 4 gpus (you choose GPUs)
|
||||
# trainer = Trainer(max_nb_epochs=1, gpus=[0, 1, 3, 7], distributed_backend='ddp')
|
||||
|
||||
# train on 32 gpus across 4 nodes (make sure to submit appropriate SLURM job)
|
||||
# trainer = Trainer(experiment=exp, max_nb_epochs=1, gpus=[0, 1, 2, 3, 4, 5, 6, 7], nb_gpu_nodes=4)
|
||||
# trainer = Trainer(max_nb_epochs=1, gpus=8, nb_gpu_nodes=4, distributed_backend='ddp')
|
||||
|
||||
# train (1 epoch only here for demo)
|
||||
trainer.fit(model)
|
||||
|
||||
# view tensorflow logs
|
||||
# view tensorboard logs
|
||||
print('View tensorboard logs by running\ntensorboard --logdir %s' % os.getcwd())
|
||||
print('and going to http://localhost:6006 on your browser')
|
||||
```
|
||||
@@ -170,20 +178,20 @@ trainer.test()
|
||||
Everything in gray!
|
||||
You define the blue parts using the LightningModule interface:
|
||||
|
||||

|
||||

|
||||
|
||||
```python
|
||||
# what to do in the training loop
|
||||
def training_step(self, data_batch, batch_nb):
|
||||
def training_step(self, batch, batch_nb):
|
||||
|
||||
# what to do in the validation loop
|
||||
def validation_step(self, data_batch, batch_nb):
|
||||
def validation_step(self, batch, batch_nb):
|
||||
|
||||
# how to aggregate validation_step outputs
|
||||
def validation_end(self, outputs):
|
||||
|
||||
# and your dataloaders
|
||||
def tng_dataloader():
|
||||
def train_dataloader():
|
||||
def val_dataloader():
|
||||
def test_dataloader():
|
||||
```
|
||||
@@ -192,8 +200,8 @@ def test_dataloader():
|
||||
|
||||
```python
|
||||
# define what happens for training here
|
||||
def training_step(self, data_batch, batch_nb):
|
||||
x, y = data_batch
|
||||
def training_step(self, batch, batch_nb):
|
||||
x, y = batch
|
||||
|
||||
# define your own forward and loss calculation
|
||||
hidden_states = self.encoder(x)
|
||||
@@ -219,8 +227,8 @@ def training_step(self, data_batch, batch_nb):
|
||||
|
||||
```python
|
||||
# define what happens for validation here
|
||||
def validation_step(self, data_batch, batch_nb):
|
||||
x, y = data_batch
|
||||
def validation_step(self, batch, batch_nb):
|
||||
x, y = batch
|
||||
|
||||
# or as basic as a CNN classification
|
||||
out = self.forward(x)
|
||||
@@ -245,12 +253,13 @@ def validation_end(self, outputs):
|
||||
|
||||
val_loss_mean /= len(outputs)
|
||||
val_acc_mean /= len(outputs)
|
||||
tqdm_dic = {'val_loss': val_loss_mean.item(), 'val_acc': val_acc_mean.item()}
|
||||
return tqdm_dic
|
||||
logs = {'val_loss': val_loss_mean.item(), 'val_acc': val_acc_mean.item()}
|
||||
result = {'log': logs}
|
||||
return result
|
||||
```
|
||||
|
||||
## Tensorboard
|
||||
Lightning is fully integrated with tensorboard.
|
||||
Lightning is fully integrated with tensorboard, MLFlow and supports any logging module.
|
||||
|
||||

|
||||
|
||||
@@ -258,26 +267,11 @@ Lightning also adds a text column with all the hyperparameters for this experime
|
||||
|
||||

|
||||
|
||||
Simply note the path you set for the [Experiment](https://williamfalcon.github.io/test-tube/experiment_tracking/experiment/) from [test_tube](https://github.com/williamFalcon/test-tube)
|
||||
```python
|
||||
from test_tube import Experiment
|
||||
from pytorch_lightning import Trainer
|
||||
|
||||
exp = Experiment(save_dir='/some/path')
|
||||
trainer = Trainer(experiment=exp)
|
||||
...
|
||||
```
|
||||
|
||||
And run tensorboard from that dir
|
||||
```bash
|
||||
tensorboard --logdir /some/path
|
||||
```
|
||||
|
||||
## Lightning automates all of the following ([each is also configurable](https://williamfalcon.github.io/pytorch-lightning/Trainer/)):
|
||||
|
||||
|
||||
#### Checkpointing
|
||||
|
||||
- [Checkpoint callback](https://williamfalcon.github.io/pytorch-lightning/Trainer/Checkpointing/#model-saving)
|
||||
- [Model saving](https://williamfalcon.github.io/pytorch-lightning/Trainer/Checkpointing/#model-saving)
|
||||
- [Model loading](https://williamfalcon.github.io/pytorch-lightning/LightningModule/methods/#load-from-metrics)
|
||||
- [Restoring training session](https://williamfalcon.github.io/pytorch-lightning/Trainer/Checkpointing/#restoring-training-session)
|
||||
@@ -321,6 +315,7 @@ tensorboard --logdir /some/path
|
||||
|
||||
- [Accumulate gradients](https://williamfalcon.github.io/pytorch-lightning/Trainer/Training%20Loop/#accumulated-gradients)
|
||||
- [Force training for min or max epochs](https://williamfalcon.github.io/pytorch-lightning/Trainer/Training%20Loop/#force-training-for-min-or-max-epochs)
|
||||
- [Early stopping callback](https://williamfalcon.github.io/pytorch-lightning/Trainer/Training%20Loop/#early-stopping)
|
||||
- [Force disable early stop](https://williamfalcon.github.io/pytorch-lightning/Trainer/Training%20Loop/#force-disable-early-stop)
|
||||
- [Gradient Clipping](https://williamfalcon.github.io/pytorch-lightning/Trainer/Training%20Loop/#gradient-clipping)
|
||||
- [Hooks](https://williamfalcon.github.io/pytorch-lightning/Trainer/hooks/)
|
||||
@@ -341,27 +336,11 @@ tensorboard --logdir /some/path
|
||||
#### Testing loop
|
||||
- [Run test set](https://williamfalcon.github.io/pytorch-lightning/Trainer/Testing%20loop/)
|
||||
|
||||
## Demo
|
||||
```bash
|
||||
# install lightning
|
||||
pip install pytorch_lightning
|
||||
|
||||
# clone lightning for the demo
|
||||
git clone https://github.com/williamFalcon/pytorch-lightning.git
|
||||
cd pytorch-lightning
|
||||
cd examples/new_project_templates/
|
||||
|
||||
# all of the following demos use the SAME model to show no modification needs to be made to your code
|
||||
|
||||
# train on cpu
|
||||
python single_cpu_template.py
|
||||
|
||||
# train on multiple-gpus
|
||||
python single_gpu_node_template.py --gpus "0,1"
|
||||
|
||||
# train on 32 gpus on a cluster (run on a SLURM managed cluster)
|
||||
python multi_node_cluster_template.py --nb_gpu_nodes 4 --gpus '0,1,2,3,4,5,6,7'
|
||||
```
|
||||
## Examples
|
||||
- [GAN](https://github.com/williamFalcon/pytorch-lightning/tree/master/examples/domain_templates/gan.py)
|
||||
- [MNIST](https://github.com/williamFalcon/pytorch-lightning/tree/master/examples/basic_examples)
|
||||
- [Other projects using Lightning](https://github.com/williamFalcon/pytorch-lightning/network/dependents?package_id=UGFja2FnZS0zNzE3NDU4OTM%3D)
|
||||
- [Multi-node](https://github.com/williamFalcon/pytorch-lightning/tree/master/examples/multi_node_examples)
|
||||
|
||||
## Tutorials
|
||||
- [Basic Lightning use](https://towardsdatascience.com/supercharge-your-ai-research-with-pytorch-lightning-337948a99eec)
|
||||
|
||||
@@ -10,7 +10,7 @@ Otherwise, to Define a Lightning Module, implement the following methods:
|
||||
**Required**:
|
||||
|
||||
- [training_step](RequiredTrainerInterface.md#training_step)
|
||||
- [tng_dataloader](RequiredTrainerInterface.md#tng_dataloader)
|
||||
- [train_dataloader](RequiredTrainerInterface.md#train_dataloader)
|
||||
- [configure_optimizers](RequiredTrainerInterface.md#configure_optimizers)
|
||||
|
||||
**Optional**:
|
||||
@@ -23,7 +23,6 @@ Otherwise, to Define a Lightning Module, implement the following methods:
|
||||
- [test_dataloader](RequiredTrainerInterface.md#test_dataloader)
|
||||
- [on_save_checkpoint](RequiredTrainerInterface.md#on_save_checkpoint)
|
||||
- [on_load_checkpoint](RequiredTrainerInterface.md#on_load_checkpoint)
|
||||
- [update_tng_log_metrics](RequiredTrainerInterface.md#update_tng_log_metrics)
|
||||
- [add_model_specific_args](RequiredTrainerInterface.md#add_model_specific_args)
|
||||
|
||||
---
|
||||
@@ -78,10 +77,10 @@ class CoolModel(pl.LightningModule):
|
||||
|
||||
def configure_optimizers(self):
|
||||
# REQUIRED
|
||||
return [torch.optim.Adam(self.parameters(), lr=0.02)]
|
||||
return torch.optim.Adam(self.parameters(), lr=0.02)
|
||||
|
||||
@pl.data_loader
|
||||
def tng_dataloader(self):
|
||||
def train_dataloader(self):
|
||||
return DataLoader(MNIST(os.getcwd(), train=True, download=True, transform=transforms.ToTensor()), batch_size=32)
|
||||
|
||||
@pl.data_loader
|
||||
@@ -111,7 +110,7 @@ The LightningModule interface is on the right. Each method corresponds to a part
|
||||
### training_step
|
||||
|
||||
``` {.python}
|
||||
def training_step(self, data_batch, batch_nb)
|
||||
def training_step(self, batch, batch_nb)
|
||||
```
|
||||
|
||||
In this step you'd normally do the forward pass and calculate the loss for a batch. You can also do fancier things like multiple forward passes or something specific to your model.
|
||||
@@ -120,7 +119,7 @@ In this step you'd normally do the forward pass and calculate the loss for a bat
|
||||
|
||||
| Param | description |
|
||||
|---|---|
|
||||
| data_batch | The output of your dataloader. A tensor, tuple or list |
|
||||
| batch | The output of your dataloader. A tensor, tuple or list |
|
||||
| batch_nb | Integer displaying which batch this is |
|
||||
|
||||
**Return**
|
||||
@@ -130,14 +129,15 @@ Dictionary or OrderedDict
|
||||
| key | value | is required |
|
||||
|---|---|---|
|
||||
| loss | tensor scalar | Y |
|
||||
| prog | Dict for progress bar display. Must have only tensors | N |
|
||||
| progress_bar | Dict for progress bar display. Must have only tensors | N |
|
||||
| log | Dict of metrics to add to logger. Must have only tensors (no images, etc) | N |
|
||||
|
||||
|
||||
**Example**
|
||||
|
||||
``` {.python}
|
||||
def training_step(self, data_batch, batch_nb):
|
||||
x, y, z = data_batch
|
||||
def training_step(self, batch, batch_nb):
|
||||
x, y, z = batch
|
||||
|
||||
# implement your own
|
||||
out = self.forward(x)
|
||||
@@ -145,7 +145,8 @@ def training_step(self, data_batch, batch_nb):
|
||||
|
||||
output = {
|
||||
'loss': loss, # required
|
||||
'prog': {'tng_loss': loss, 'batch_nb': batch_nb} # optional
|
||||
'progress_bar': {'training_loss': loss}, # optional (MUST ALL BE TENSORS)
|
||||
'log': {'training_loss': loss} # optional (MUST ALL BE TENSORS)
|
||||
}
|
||||
|
||||
# return a dict
|
||||
@@ -155,21 +156,25 @@ def training_step(self, data_batch, batch_nb):
|
||||
If you define multiple optimizers, this step will also be called with an additional ```optimizer_idx``` param.
|
||||
``` {.python}
|
||||
# Multiple optimizers (ie: GANs)
|
||||
def training_step(self, data_batch, batch_nb, optimizer_idx):
|
||||
def training_step(self, batch, batch_nb, optimizer_idx):
|
||||
if optimizer_idx == 0:
|
||||
# do training_step with encoder
|
||||
if optimizer_idx == 1:
|
||||
# do training_step with decoder
|
||||
```
|
||||
|
||||
You can also return a -1 instead of a dict to stop the current loop. This is useful if you want to
|
||||
break out of the current training epoch early.
|
||||
|
||||
---
|
||||
### tng_dataloader
|
||||
### train_dataloader
|
||||
|
||||
``` {.python}
|
||||
@pl.data_loader
|
||||
def tng_dataloader(self)
|
||||
def train_dataloader(self)
|
||||
```
|
||||
Called by lightning during training loop. Make sure to use the @pl.data_loader decorator, this ensures not calling this function until the data are needed.
|
||||
Called by lightning during training loop. Make sure to use the @pl.data_loader decorator, this ensures not calling this function until the data are needed.
|
||||
If you want to change the data during every epoch DON'T use the data_loader decorator.
|
||||
|
||||
##### Return
|
||||
PyTorch DataLoader
|
||||
@@ -178,7 +183,7 @@ PyTorch DataLoader
|
||||
|
||||
``` {.python}
|
||||
@pl.data_loader
|
||||
def tng_dataloader(self):
|
||||
def train_dataloader(self):
|
||||
transform = transforms.Compose([transforms.ToTensor(), transforms.Normalize((0.5,), (1.0,))])
|
||||
dataset = MNIST(root='/path/to/mnist/', train=True, transform=transform, download=True)
|
||||
loader = torch.utils.data.DataLoader(
|
||||
@@ -200,8 +205,7 @@ Set up as many optimizers and (optionally) learning rate schedulers as you need.
|
||||
Lightning will call .backward() and .step() on each one in every epoch. If you use 16 bit precision it will also handle that.
|
||||
|
||||
**Note:** If you use multiple optimizers, training_step will have an additional ```optimizer_idx``` parameter.
|
||||
|
||||
|
||||
**Note 2:** If you use LBFGS lightning handles the closure function automatically for you.
|
||||
|
||||
##### Return
|
||||
Return any of these 3 options:
|
||||
@@ -240,10 +244,10 @@ the [optimizer_step](https://williamfalcon.github.io/pytorch-lightning/Trainer/h
|
||||
|
||||
``` {.python}
|
||||
# if you have one val dataloader:
|
||||
def validation_step(self, data_batch, batch_nb)
|
||||
def validation_step(self, batch, batch_nb)
|
||||
|
||||
# if you have multiple val dataloaders:
|
||||
def validation_step(self, data_batch, batch_nb, dataloader_idx)
|
||||
def validation_step(self, batch, batch_nb, dataloader_idxdx)
|
||||
```
|
||||
**OPTIONAL**
|
||||
If you don't need to validate you don't need to implement this method. In this step you'd normally generate examples or calculate anything of interest such as accuracy.
|
||||
@@ -256,22 +260,22 @@ The dict you return here will be available in the `validation_end` method.
|
||||
|
||||
| Param | description |
|
||||
|---|---|
|
||||
| data_batch | The output of your dataloader. A tensor, tuple or list |
|
||||
| batch | The output of your dataloader. A tensor, tuple or list |
|
||||
| batch_nb | Integer displaying which batch this is |
|
||||
| dataloader_i | Integer displaying which dataloader this is (only if multiple val datasets used) |
|
||||
| dataloader_idx | Integer displaying which dataloader this is (only if multiple val datasets used) |
|
||||
|
||||
**Return**
|
||||
|
||||
| Return | description | optional |
|
||||
|---|---|---|
|
||||
| dict | Dict or OrderedDict with metrics to display in progress bar. All keys must be tensors. | Y |
|
||||
| dict | Dict or OrderedDict - passed to the validation_end step | N |
|
||||
|
||||
**Example**
|
||||
|
||||
``` {.python}
|
||||
# CASE 1: A single validation dataset
|
||||
def validation_step(self, data_batch, batch_nb):
|
||||
x, y = data_batch
|
||||
def validation_step(self, batch, batch_nb):
|
||||
x, y = batch
|
||||
|
||||
# implement your own
|
||||
out = self.forward(x)
|
||||
@@ -281,7 +285,7 @@ def validation_step(self, data_batch, batch_nb):
|
||||
# or generated text... or whatever
|
||||
sample_imgs = x[:6]
|
||||
grid = torchvision.utils.make_grid(sample_imgs)
|
||||
self.experiment.add_image('example_images', grid, 0)
|
||||
self.logger.experiment.add_image('example_images', grid, 0)
|
||||
|
||||
# calculate acc
|
||||
labels_hat = torch.argmax(out, dim=1)
|
||||
@@ -302,7 +306,7 @@ If you pass in multiple validation datasets, validation_step will have an additi
|
||||
|
||||
```python
|
||||
# CASE 2: multiple validation datasets
|
||||
def validation_step(self, data_batch, batch_nb, dataset_idx):
|
||||
def validation_step(self, batch, batch_nb, dataset_idx):
|
||||
# dataset_idx tells you which dataset this is.
|
||||
```
|
||||
|
||||
@@ -328,9 +332,12 @@ The outputs here are strictly for the progress bar. If you don't need to display
|
||||
|
||||
**Return**
|
||||
|
||||
| Return | description | optional |
|
||||
|---|---|---|
|
||||
| dict | Dict of OrderedDict with metrics to display in progress bar | Y |
|
||||
Dictionary or OrderedDict
|
||||
|
||||
| key | value | is required |
|
||||
|---|---|---|
|
||||
| progress_bar | Dict for progress bar display. Must have only tensors | N |
|
||||
| log | Dict of metrics to add to logger. Must have only tensors (no images, etc) | N |
|
||||
|
||||
**Example**
|
||||
|
||||
@@ -351,8 +358,14 @@ def validation_end(self, outputs):
|
||||
|
||||
val_loss_mean /= len(outputs)
|
||||
val_acc_mean /= len(outputs)
|
||||
tqdm_dic = {'val_loss': val_loss_mean.item(), 'val_acc': val_acc_mean.item()}
|
||||
return tqdm_dic
|
||||
tqdm_dict = {'val_loss': val_loss_mean.item(), 'val_acc': val_acc_mean.item()}
|
||||
|
||||
# show val_loss and val_acc in progress bar but only log val_loss
|
||||
results = {
|
||||
'progress_bar': tqdm_dict,
|
||||
'log': {'val_loss': val_loss_mean.item()}
|
||||
}
|
||||
return results
|
||||
```
|
||||
|
||||
With multiple dataloaders, `outputs` will be a list of lists. The outer list contains
|
||||
@@ -377,18 +390,24 @@ def validation_end(self, outputs):
|
||||
|
||||
val_loss_mean /= i
|
||||
val_acc_mean /= i
|
||||
tqdm_dic = {'val_loss': val_loss_mean.item(), 'val_acc': val_acc_mean.item()}
|
||||
return tqdm_dic
|
||||
tqdm_dict = {'val_loss': val_loss_mean.item(), 'val_acc': val_acc_mean.item()}
|
||||
|
||||
# show val_loss and val_acc in progress bar but only log val_loss
|
||||
results = {
|
||||
'progress_bar': tqdm_dict,
|
||||
'log': {'val_loss': val_loss_mean.item()}
|
||||
}
|
||||
return results
|
||||
```
|
||||
|
||||
### test_step
|
||||
|
||||
``` {.python}
|
||||
# if you have one test dataloader:
|
||||
def test_step(self, data_batch, batch_nb)
|
||||
def test_step(self, batch, batch_nb)
|
||||
|
||||
# if you have multiple test dataloaders:
|
||||
def test_step(self, data_batch, batch_nb, dataloader_idx)
|
||||
def test_step(self, batch, batch_nb, dataloader_idxdx)
|
||||
```
|
||||
**OPTIONAL**
|
||||
If you don't need to test you don't need to implement this method. In this step you'd normally generate examples or calculate anything of interest such as accuracy.
|
||||
@@ -403,9 +422,9 @@ This function is used when you execute `trainer.test()`.
|
||||
|
||||
| Param | description |
|
||||
|---|---|
|
||||
| data_batch | The output of your dataloader. A tensor, tuple or list |
|
||||
| batch | The output of your dataloader. A tensor, tuple or list |
|
||||
| batch_nb | Integer displaying which batch this is |
|
||||
| dataloader_i | Integer displaying which dataloader this is (only if multiple test datasets used) |
|
||||
| dataloader_idx | Integer displaying which dataloader this is (only if multiple test datasets used) |
|
||||
|
||||
**Return**
|
||||
|
||||
@@ -417,8 +436,8 @@ This function is used when you execute `trainer.test()`.
|
||||
|
||||
``` {.python}
|
||||
# CASE 1: A single test dataset
|
||||
def test_step(self, data_batch, batch_nb):
|
||||
x, y = data_batch
|
||||
def test_step(self, batch, batch_nb):
|
||||
x, y = batch
|
||||
|
||||
# implement your own
|
||||
out = self.forward(x)
|
||||
@@ -443,7 +462,7 @@ If you pass in multiple test datasets, test_step will have an additional argumen
|
||||
|
||||
```python
|
||||
# CASE 2: multiple test datasets
|
||||
def test_step(self, data_batch, batch_nb, dataset_idx):
|
||||
def test_step(self, batch, batch_nb, dataset_idx):
|
||||
# dataset_idx tells you which dataset this is.
|
||||
```
|
||||
|
||||
@@ -490,8 +509,14 @@ def test_end(self, outputs):
|
||||
|
||||
test_loss_mean /= len(outputs)
|
||||
test_acc_mean /= len(outputs)
|
||||
tqdm_dic = {'test_loss': test_loss_mean.item(), 'test_acc': test_acc_mean.item()}
|
||||
return tqdm_dic
|
||||
tqdm_dict = {'test_loss': test_loss_mean.item(), 'test_acc': test_acc_mean.item()}
|
||||
|
||||
# show test_loss and test_acc in progress bar but only log test_loss
|
||||
results = {
|
||||
'progress_bar': tqdm_dict,
|
||||
'log': {'test_loss': val_loss_mean.item()}
|
||||
}
|
||||
return results
|
||||
```
|
||||
|
||||
With multiple dataloaders, `outputs` will be a list of lists. The outer list contains
|
||||
@@ -516,8 +541,14 @@ def test_end(self, outputs):
|
||||
|
||||
test_loss_mean /= i
|
||||
test_acc_mean /= i
|
||||
tqdm_dic = {'test_loss': test_loss_mean.item(), 'test_acc': test_acc_mean.item()}
|
||||
return tqdm_dic
|
||||
tqdm_dict = {'test_loss': test_loss_mean.item(), 'test_acc': test_acc_mean.item()}
|
||||
|
||||
# show test_loss and test_acc in progress bar but only log test_loss
|
||||
results = {
|
||||
'progress_bar': tqdm_dict,
|
||||
'log': {'test_loss': val_loss_mean.item()}
|
||||
}
|
||||
return results
|
||||
```
|
||||
|
||||
---
|
||||
@@ -573,6 +604,7 @@ def val_dataloader(self)
|
||||
If you don't need a validation dataset and a validation_step, you don't need to implement this method.
|
||||
|
||||
Called by lightning during validation loop. Make sure to use the @pl.data_loader decorator, this ensures not calling this function until the data are needed.
|
||||
If you want to change the data during every epoch DON'T use the data_loader decorator.
|
||||
|
||||
##### Return
|
||||
PyTorch DataLoader or list of PyTorch Dataloaders.
|
||||
@@ -612,6 +644,7 @@ def test_dataloader(self)
|
||||
If you don't need a test dataset and a test_step, you don't need to implement this method.
|
||||
|
||||
Called by lightning during test loop. Make sure to use the @pl.data_loader decorator, this ensures not calling this function until the data are needed.
|
||||
If you want to change the data during every epoch DON'T use the data_loader decorator.
|
||||
|
||||
##### Return
|
||||
PyTorch DataLoader
|
||||
@@ -632,26 +665,6 @@ def test_dataloader(self):
|
||||
return loader
|
||||
```
|
||||
|
||||
---
|
||||
### update_tng_log_metrics
|
||||
|
||||
``` {.python}
|
||||
def update_tng_log_metrics(self, logs)
|
||||
```
|
||||
Called by lightning right before it logs metrics for this batch.
|
||||
This is a chance to amend or add to the metrics about to be logged.
|
||||
|
||||
##### Return
|
||||
Dict
|
||||
|
||||
**Example**
|
||||
|
||||
``` {.python}
|
||||
def update_tng_log_metrics(self, logs):
|
||||
# modify or add to logs
|
||||
return logs
|
||||
```
|
||||
|
||||
---
|
||||
### add_model_specific_args
|
||||
|
||||
@@ -674,7 +687,7 @@ def add_model_specific_args(parent_parser, root_dir):
|
||||
parser = HyperOptArgumentParser(strategy=parent_parser.strategy, parents=[parent_parser])
|
||||
|
||||
# param overwrites
|
||||
# parser.set_defaults(gradient_clip=5.0)
|
||||
# parser.set_defaults(gradient_clip_val=5.0)
|
||||
|
||||
# network params
|
||||
parser.opt_list('--drop_prob', default=0.2, options=[0.2, 0.5], type=float, tunable=False)
|
||||
|
||||
@@ -9,12 +9,22 @@ The current epoch
|
||||
Current dtype
|
||||
|
||||
---
|
||||
#### experiment
|
||||
An instance of test-tube Experiment which you can use to log anything for tensorboard (subclass of [PyTorch SummaryWriter](https://pytorch.org/docs/stable/tensorboard.html)).
|
||||
#### logger
|
||||
A reference to the logger you passed into trainer.
|
||||
Passing a logger is optional. If you don't pass one in, Lightning will create one for you automatically.
|
||||
This logger saves logs to '''/os.getcwd()/lightning_logs'''
|
||||
```python
|
||||
Trainer(logger=your_logger)
|
||||
```
|
||||
|
||||
Call it from anywhere in your LightningModule to add metrics, images, etc... whatever your logger supports.
|
||||
|
||||
Here is an example using the TestTubeLogger (which is a wrapper on [PyTorch SummaryWriter](https://pytorch.org/docs/stable/tensorboard.html) with versioned folder structure).
|
||||
```{.python}
|
||||
self.experiment.add_embedding(...)
|
||||
self.experiment.log({'val_loss': 0.9})
|
||||
self.experiment.add_scalars(...)
|
||||
# if logger is a tensorboard logger or TestTubeLogger
|
||||
self.logger.experiment.add_embedding(...)
|
||||
self.logger.experiment.log({'val_loss': 0.9})
|
||||
self.logger.experiment.add_scalars(...)
|
||||
```
|
||||
|
||||
---
|
||||
@@ -22,7 +32,7 @@ self.experiment.add_scalars(...)
|
||||
Total training batches seen across all epochs
|
||||
|
||||
---
|
||||
#### gradient_clip
|
||||
#### gradient_clip_val
|
||||
The current gradient clip value
|
||||
|
||||
---
|
||||
|
||||
@@ -2,17 +2,25 @@ Lightning can automate saving and loading checkpoints.
|
||||
|
||||
---
|
||||
### Model saving
|
||||
To enable checkpointing, define the checkpoint callback and give it to the trainer.
|
||||
Checkpointing is enabled by default to the current working directory.
|
||||
To change the checkpoint path pass in :
|
||||
```python
|
||||
Trainer(default_save_path='/your/path/to/save/checkpoints')
|
||||
```
|
||||
|
||||
To modify the behavior of checkpointing pass in your own callback.
|
||||
|
||||
``` {.python}
|
||||
from pytorch_lightning.callbacks import ModelCheckpoint
|
||||
|
||||
# DEFAULTS used by the Trainer
|
||||
checkpoint_callback = ModelCheckpoint(
|
||||
filepath='/path/to/store/weights.ckpt',
|
||||
filepath=os.getcwd(),
|
||||
save_best_only=True,
|
||||
verbose=True,
|
||||
monitor='val_loss',
|
||||
mode='min'
|
||||
mode='min',
|
||||
prefix=''
|
||||
)
|
||||
|
||||
trainer = Trainer(checkpoint_callback=checkpoint_callback)
|
||||
|
||||
@@ -8,6 +8,17 @@ None of the flags below require changing anything about your lightningModel defi
|
||||
Lightning supports two backends. DataParallel and DistributedDataParallel. Both can be used for single-node multi-GPU training.
|
||||
For multi-node training you must use DistributedDataParallel.
|
||||
|
||||
##### DataParallel (dp)
|
||||
Splits a batch across multiple GPUs on the same node. Cannot be used for multi-node training.
|
||||
|
||||
##### DistributedDataParallel (ddp)
|
||||
Trains a copy of the model on each GPU and only syncs gradients. If used with DistributedSampler, each GPU trains
|
||||
on a subset of the full dataset.
|
||||
|
||||
##### DistributedDataParallel-2 (ddp2)
|
||||
Works like DDP, except each node trains a single copy of the model using ALL GPUs on that node.
|
||||
Very useful when dealing with negative samples, etc...
|
||||
|
||||
You can toggle between each mode by setting this flag.
|
||||
``` {.python}
|
||||
# DEFAULT (when using single GPU or no GPUs)
|
||||
@@ -18,6 +29,9 @@ trainer = Trainer(distributed_backend='dp')
|
||||
|
||||
# change to distributed data parallel (gpus > 1)
|
||||
trainer = Trainer(distributed_backend='ddp')
|
||||
|
||||
# change to distributed data parallel (gpus > 1)
|
||||
trainer = Trainer(distributed_backend='ddp2')
|
||||
```
|
||||
|
||||
If you request multiple nodes, the back-end will auto-switch to ddp.
|
||||
@@ -37,7 +51,7 @@ Below are the possible configurations we support.
|
||||
|---|---|---|---|---|---|
|
||||
| Y | | | | | ```Trainer(gpus=1)``` |
|
||||
| Y | | | | Y | ```Trainer(gpus=1, use_amp=True)``` |
|
||||
| | Y | Y | | | ```Trainer(gpus=k)``` |
|
||||
| | Y | Y | | | ```Trainer(gpus=k, distributed_backend='dp')``` |
|
||||
| | Y | | Y | | ```Trainer(gpus=k, distributed_backend='ddp')``` |
|
||||
| | Y | | Y | Y | ```Trainer(gpus=k, distributed_backend='ddp', use_amp=True)``` |
|
||||
|
||||
@@ -74,6 +88,21 @@ First, install apex (if install fails, look [here](https://github.com/NVIDIA/ape
|
||||
```bash
|
||||
$ git clone https://github.com/NVIDIA/apex
|
||||
$ cd apex
|
||||
|
||||
# ------------------------
|
||||
# OPTIONAL: on your cluster you might need to load cuda 10 or 9
|
||||
# depending on how you installed PyTorch
|
||||
|
||||
# see available modules
|
||||
module avail
|
||||
|
||||
# load correct cuda before install
|
||||
module load cuda-10.0
|
||||
# ------------------------
|
||||
|
||||
# make sure you've loaded a cuda version > 4.0 and < 7.0
|
||||
module load gcc-6.1.0
|
||||
|
||||
$ pip install -v --no-cache-dir --global-option="--cpp_ext" --global-option="--cuda_ext" ./
|
||||
```
|
||||
|
||||
@@ -105,41 +134,54 @@ trainer = Trainer(gpus=8, distributed_backend='ddp')
|
||||
|
||||
---
|
||||
#### Multi-node
|
||||
Multi-node training is easily done by specifying these flags.
|
||||
Multi-node training is easily done by specifying these flags.
|
||||
```python
|
||||
# train on 12*8 GPUs
|
||||
trainer = Trainer(gpus=8, nb_gpu_nodes=12)
|
||||
trainer = Trainer(gpus=8, nb_gpu_nodes=12, distributed_backend='ddp')
|
||||
```
|
||||
|
||||
In addition, make sure to set up your SLURM job correctly via the [SlurmClusterObject](https://williamfalcon.github.io/test-tube/hpc/SlurmCluster/). In particular, specify the number of tasks per node correctly.
|
||||
You must configure your job submission script correctly for the trainer to work. Here is an example
|
||||
script for the above trainer configuration.
|
||||
|
||||
```python
|
||||
cluster = SlurmCluster(
|
||||
hyperparam_optimizer=test_tube.HyperOptArgumentParser(),
|
||||
log_path='/some/path/to/save',
|
||||
)
|
||||
```sh
|
||||
#!/bin/bash -l
|
||||
|
||||
# OPTIONAL FLAGS WHICH MAY BE CLUSTER DEPENDENT
|
||||
# which interface your nodes use for communication
|
||||
cluster.add_command('export NCCL_SOCKET_IFNAME=^docker0,lo')
|
||||
# SLURM SUBMIT SCRIPT
|
||||
#SBATCH --nodes=12
|
||||
#SBATCH --gres=gpu:8
|
||||
#SBATCH --ntasks-per-node=8
|
||||
#SBATCH --mem=0
|
||||
#SBATCH --time=0-02:00:00
|
||||
|
||||
# see output of the NCCL connection process
|
||||
# NCCL is how the nodes talk to each other
|
||||
cluster.add_command('export NCCL_DEBUG=INFO')
|
||||
# activate conda env
|
||||
conda activate my_env
|
||||
|
||||
# setting a master port here is a good idea.
|
||||
cluster.add_command('export MASTER_PORT=%r' % PORT)
|
||||
# -------------------------
|
||||
# OPTIONAL
|
||||
# -------------------------
|
||||
# debugging flags (optional)
|
||||
# export NCCL_DEBUG=INFO
|
||||
# export PYTHONFAULTHANDLER=1
|
||||
|
||||
# good to load the latest NCCL version
|
||||
cluster.load_modules(['NCCL/2.4.7-1-cuda.10.0'])
|
||||
# PyTorch comes with prebuilt NCCL support... but if you have issues with it
|
||||
# you might need to load the latest version from your modules
|
||||
# module load NCCL/2.4.7-1-cuda.10.0
|
||||
|
||||
# configure cluster
|
||||
cluster.per_experiment_nb_nodes = 12
|
||||
cluster.per_experiment_nb_gpus = 8
|
||||
# on your cluster you might need these:
|
||||
# set the network interface
|
||||
# export NCCL_SOCKET_IFNAME=^docker0,lo
|
||||
# -------------------------
|
||||
|
||||
cluster.add_slurm_cmd(cmd='ntasks-per-node', value=8, comment='1 task per gpu')
|
||||
# random port between 12k and 20k
|
||||
export MASTER_PORT=$((12000 + RANDOM % 20000))
|
||||
|
||||
# run script from above
|
||||
python my_main_file.py
|
||||
```
|
||||
|
||||
**NOTE:** When running in DDP mode, any errors in your code will show up as an NCCL issue.
|
||||
Set the ```NCCL_DEBUG=INFO``` flag to see the ACTUAL error.
|
||||
|
||||
Finally, make sure to add a distributed sampler to your dataset. The distributed sampler copies a
|
||||
portion of your dataset onto each GPU. (World_size = gpus_per_node * nb_nodes).
|
||||
|
||||
@@ -154,6 +196,58 @@ dist_sampler = torch.utils.data.distributed.DistributedSampler(dataset)
|
||||
dataloader = Dataloader(dataset, sampler=dist_sampler)
|
||||
```
|
||||
|
||||
#### Auto-slurm-job-submission
|
||||
Instead of manually building SLURM scripts, you can use the [SlurmCluster object](https://williamfalcon.github.io/test-tube/hpc/SlurmCluster/) to
|
||||
do this for you. The SlurmCluster can also run a grid search if you pass in a [HyperOptArgumentParser](https://williamfalcon.github.io/test-tube/hyperparameter_optimization/HyperOptArgumentParser/).
|
||||
|
||||
Here is an example where you run a grid search of 9 combinations of hyperparams.
|
||||
[The full examples are here](https://github.com/williamFalcon/pytorch-lightning/tree/master/examples/new_project_templates/multi_node_examples).
|
||||
```python
|
||||
# grid search 3 values of learning rate and 3 values of number of layers for your net
|
||||
# this generates 9 experiments (lr=1e-3, layers=16), (lr=1e-3, layers=32), (lr=1e-3, layers=64), ... (lr=1e-1, layers=64)
|
||||
parser = HyperOptArgumentParser(strategy='grid_search', add_help=False)
|
||||
parser.opt_list('--learning_rate', default=0.001, type=float, options=[1e-3, 1e-2, 1e-1], tunable=True)
|
||||
parser.opt_list('--layers', default=1, type=float, options=[16, 32, 64], tunable=True)
|
||||
hyperparams = parser.parse_args()
|
||||
|
||||
# Slurm cluster submits 9 jobs, each with a set of hyperparams
|
||||
cluster = SlurmCluster(
|
||||
hyperparam_optimizer=hyperparams,
|
||||
log_path='/some/path/to/save',
|
||||
)
|
||||
|
||||
# OPTIONAL FLAGS WHICH MAY BE CLUSTER DEPENDENT
|
||||
# which interface your nodes use for communication
|
||||
cluster.add_command('export NCCL_SOCKET_IFNAME=^docker0,lo')
|
||||
|
||||
# see output of the NCCL connection process
|
||||
# NCCL is how the nodes talk to each other
|
||||
cluster.add_command('export NCCL_DEBUG=INFO')
|
||||
|
||||
# setting a master port here is a good idea.
|
||||
cluster.add_command('export MASTER_PORT=%r' % PORT)
|
||||
|
||||
# ************** DON'T FORGET THIS ***************
|
||||
# MUST load the latest NCCL version
|
||||
cluster.load_modules(['NCCL/2.4.7-1-cuda.10.0'])
|
||||
|
||||
# configure cluster
|
||||
cluster.per_experiment_nb_nodes = 12
|
||||
cluster.per_experiment_nb_gpus = 8
|
||||
|
||||
cluster.add_slurm_cmd(cmd='ntasks-per-node', value=8, comment='1 task per gpu')
|
||||
|
||||
# submit a script with 9 combinations of hyper params
|
||||
# (lr=1e-3, layers=16), (lr=1e-3, layers=32), (lr=1e-3, layers=64), ... (lr=1e-1, layers=64)
|
||||
cluster.optimize_parallel_cluster_gpu(
|
||||
main,
|
||||
nb_trials=9, # how many permutations of the grid search to run
|
||||
job_name='name_for_squeue'
|
||||
)
|
||||
```
|
||||
|
||||
The other option is that you generate scripts on your own via a bash command or use another library...
|
||||
|
||||
---
|
||||
#### Self-balancing architecture
|
||||
Here lightning distributes parts of your module across available GPUs to optimize for speed and memory.
|
||||
|
||||
+125
-53
@@ -1,7 +1,113 @@
|
||||
Lighting offers a few options for logging information about model, gpu usage, etc (via test-tube). It also offers printing options for training monitoring.
|
||||
Lighting offers options for logging information about model, gpu usage, etc, via several different logging frameworks. It also offers printing options for training monitoring.
|
||||
|
||||
---
|
||||
### default_save_path
|
||||
Lightning sets a default TestTubeLogger and CheckpointCallback for you which log to
|
||||
```os.getcwd()``` by default. To modify the logging path you can set:
|
||||
```python
|
||||
Trainer(default_save_path='/your/path/to/save/checkpoints')
|
||||
```
|
||||
|
||||
If you need more custom behavior (different paths for both, different metrics, etc...)
|
||||
from the logger and the checkpointCallback, pass in your own instances as explained below.
|
||||
|
||||
|
||||
---
|
||||
### Setting up logging
|
||||
|
||||
The trainer inits a default logger for you (TestTubeLogger). All logs will
|
||||
go to the current working directory under a folder named ```os.getcwd()/lightning_logs``.
|
||||
|
||||
If you want to modify the default logging behavior even more, pass in a logger
|
||||
(which should inherit from `LightningBaseLogger`).
|
||||
|
||||
```{.python}
|
||||
my_logger = MyLightningLogger(...)
|
||||
trainer = Trainer(logger=my_logger)
|
||||
```
|
||||
|
||||
The path in this logger will overwrite default_save_path.
|
||||
|
||||
Lightning supports several common experiment tracking frameworks out of the box
|
||||
|
||||
---
|
||||
#### Test tube
|
||||
|
||||
Log using [test tube](https://williamfalcon.github.io/test-tube/).
|
||||
|
||||
```{.python}
|
||||
from pytorch_lightning.logging import TestTubeLogger
|
||||
tt_logger = TestTubeLogger(
|
||||
save_dir=".",
|
||||
name="default",
|
||||
debug=False,
|
||||
create_git_tag=False
|
||||
)
|
||||
trainer = Trainer(logger=tt_logger)
|
||||
```
|
||||
|
||||
---
|
||||
#### MLFlow
|
||||
|
||||
Log using [mlflow](https://mlflow.org)
|
||||
|
||||
```{.python}
|
||||
from pytorch_lightning.logging import MLFlowLogger
|
||||
mlf_logger = MLFlowLogger(
|
||||
experiment_name="default",
|
||||
tracking_uri="file:/."
|
||||
)
|
||||
trainer = Trainer(logger=mlf_logger)
|
||||
```
|
||||
|
||||
---
|
||||
#### Custom logger
|
||||
|
||||
You can implement your own logger by writing a class that inherits from
|
||||
`LightningLoggerBase`. Use the `rank_zero_only` decorator to make sure that
|
||||
only the first process in DDP training logs data.
|
||||
|
||||
```{.python}
|
||||
from pytorch_lightning.logging import LightningLoggerBase, rank_zero_only
|
||||
|
||||
class MyLogger(LightningLoggerBase):
|
||||
|
||||
@rank_zero_only
|
||||
def log_hyperparams(self, params):
|
||||
# params is an argparse.Namespace
|
||||
# your code to record hyperparameters goes here
|
||||
pass
|
||||
|
||||
@rank_zero_only
|
||||
def log_metrics(self, metrics, step_num):
|
||||
# metrics is a dictionary of metric names and values
|
||||
# your code to record metrics goes here
|
||||
pass
|
||||
|
||||
def save(self):
|
||||
# Optional. Any code necessary to save logger data goes here
|
||||
pass
|
||||
|
||||
@rank_zero_only
|
||||
def finalize(self, status):
|
||||
# Optional. Any code that needs to be run after training
|
||||
# finishes goes here
|
||||
```
|
||||
|
||||
If you write a logger than may be useful to others, please send
|
||||
a pull request to add it to Lighting!
|
||||
|
||||
---
|
||||
#### Using loggers
|
||||
You can call the logger anywhere from your LightningModule by doing:
|
||||
```python
|
||||
self.logger
|
||||
|
||||
# add an image if using TestTubeLogger
|
||||
self.logger.experiment.add_image(...)
|
||||
```
|
||||
|
||||
|
||||
#### Display metrics in progress bar
|
||||
``` {.python}
|
||||
# DEFAULT
|
||||
@@ -13,15 +119,21 @@ trainer = Trainer(show_progress_bar=True)
|
||||
Every k batches lightning will make an entry in the metrics log
|
||||
``` {.python}
|
||||
# DEFAULT (ie: save a .csv log file every 10 batches)
|
||||
trainer = Trainer(add_log_row_interval=10)
|
||||
trainer = Trainer(row_log_interval=10)
|
||||
```
|
||||
|
||||
---
|
||||
#### Log metric row every k batches
|
||||
#### Log GPU memory
|
||||
Logs GPU memory when metrics are logged.
|
||||
``` {.python}
|
||||
# DEFAULT
|
||||
trainer = Trainer(log_gpu_memory=False)
|
||||
trainer = Trainer(log_gpu_memory=None)
|
||||
|
||||
# log only the min/max utilization
|
||||
trainer = Trainer(log_gpu_memory='min_max')
|
||||
|
||||
# log all the GPU memory (if on DDP, logs only that node)
|
||||
trainer = Trainer(log_gpu_memory='all')
|
||||
```
|
||||
|
||||
---
|
||||
@@ -38,61 +150,21 @@ trainer = Trainer(process_position=1)
|
||||
|
||||
---
|
||||
#### Save a snapshot of all hyperparameters
|
||||
Whenever you call .save() on the test-tube experiment it logs all the hyperparameters in current use.
|
||||
Give lightning a test-tube Experiment object to automate this for you.
|
||||
Automatically log hyperparameters stored in the `hparams` attribute as an `argparse.Namespace`
|
||||
``` {.python}
|
||||
from test_tube import Experiment
|
||||
|
||||
exp = Experiment(...)
|
||||
Trainer(experiment=exp)
|
||||
```
|
||||
class MyModel(pl.Lightning):
|
||||
def __init__(self, hparams):
|
||||
self.hparams = hparams
|
||||
|
||||
---
|
||||
#### Snapshot code for a training run
|
||||
Whenever you call .save() on the test-tube experiment it snapshows all code and pushes to a git tag.
|
||||
Give lightning a test-tube Experiment object to automate this for you.
|
||||
``` {.python}
|
||||
from test_tube import Experiment
|
||||
...
|
||||
|
||||
exp = Experiment(create_git_tag=True)
|
||||
Trainer(experiment=exp)
|
||||
```
|
||||
args = parser.parse_args()
|
||||
model = MyModel(args)
|
||||
|
||||
---
|
||||
### Tensorboard support
|
||||
In the LightningModule you can access the experiment logger by doing:
|
||||
```python
|
||||
self.experiment
|
||||
|
||||
# add image
|
||||
# Look at PyTorch SummaryWriter docs for what you can do.
|
||||
self.experiment.add_image(...)
|
||||
```
|
||||
|
||||
The experiment object is a strict subclass of PyTorch SummaryWriter. However, this class
|
||||
also snapshots every detail about the experiment (data folder paths, code, hyperparams),
|
||||
and allows you to visualize it using tensorboard.
|
||||
``` {.python}
|
||||
from test_tube import Experiment, HyperOptArgumentParser
|
||||
|
||||
# exp hyperparams
|
||||
args = HyperOptArgumentParser()
|
||||
hparams = args.parse_args()
|
||||
|
||||
# this is a summaryWriter with nicer logging structure
|
||||
exp = Experiment(save_dir='/some/path', create_git_tag=True)
|
||||
|
||||
# track experiment details (must be ArgumentParser or HyperOptArgumentParser).
|
||||
# each option in the parser is tracked
|
||||
exp.argparse(hparams)
|
||||
exp.tag({'description': 'running demo'})
|
||||
|
||||
# trainer uses the exp object to log exp data
|
||||
trainer = Trainer(experiment=exp)
|
||||
logger = TestTubeLogger(...)
|
||||
t = Trainer(logger=logger)
|
||||
trainer.fit(model)
|
||||
|
||||
# view logs at:
|
||||
# tensorboard --logdir /some/path
|
||||
```
|
||||
|
||||
---
|
||||
|
||||
@@ -25,6 +25,9 @@ parser.opt_list('--nb_layers', default=2, type=int, tunable=True, options=[2, 4,
|
||||
hparams = parser.parse_args()
|
||||
```
|
||||
|
||||
**NOTE** You must set ```Tunable=True``` for that argument to be considered in the permutation set. Otherwise
|
||||
test-tube will use the default value. This flag is useful when you don't want to search over an argument and
|
||||
want to use the default instead.
|
||||
|
||||
(2). Define the cluster options in the [SlurmCluster object](https://williamfalcon.github.io/test-tube/hpc/SlurmCluster/) (over 5 nodes and 8 gpus)
|
||||
|
||||
@@ -83,6 +86,11 @@ cluster.optimize_parallel_cluster_gpu(
|
||||
job_display_name='my_exp')
|
||||
```
|
||||
|
||||
**NOTE** nb_trials specifies how many of the possible permutations to use. If using ```grid_search``` it will use
|
||||
the depth first ordering. If using ```random_search``` it will use the first k shuffled options. FYI, random search
|
||||
has been shown to be just as good as any Bayesian optimization method when using a reasonable number of samples (60),
|
||||
[see this paper for more information](http://www.jmlr.org/papers/volume13/bergstra12a/bergstra12a.pdf).
|
||||
|
||||
---
|
||||
#### Walltime auto-resubmit
|
||||
Lightning automatically resubmits jobs when they reach the walltime. Make sure to set the SIGUSR1 signal in
|
||||
|
||||
@@ -19,6 +19,25 @@ It can be useful to force training for a minimum number of epochs or limit to a
|
||||
trainer = Trainer(min_nb_epochs=1, max_nb_epochs=1000)
|
||||
```
|
||||
|
||||
---
|
||||
#### Early stopping
|
||||
The trainer already sets up default early stopping for you.
|
||||
To modify this behavior, pass in your own EarlyStopping callback.
|
||||
``` {.python}
|
||||
from pytorch_lightning.callbacks import EarlyStopping
|
||||
|
||||
# DEFAULTS used by Trainer
|
||||
early_stop_callback = EarlyStopping(
|
||||
monitor='val_loss',
|
||||
min_delta=0.00,
|
||||
patience=3,
|
||||
verbose=False,
|
||||
mode='min'
|
||||
)
|
||||
|
||||
trainer = Trainer(early_stop_callback=early_stop_callback)
|
||||
```
|
||||
|
||||
---
|
||||
#### Force disable early stop
|
||||
Use this to turn off early stopping and run training to the [max_epoch](#force-training-for-min-or-max-epochs)
|
||||
@@ -34,10 +53,10 @@ Specifically, this will [clip the gradient norm computed over all model paramete
|
||||
|
||||
``` {.python}
|
||||
# DEFAULT (ie: don't clip)
|
||||
trainer = Trainer(gradient_clip=0)
|
||||
trainer = Trainer(gradient_clip_val=0)
|
||||
|
||||
# clip gradients with norm above 0.5
|
||||
trainer = Trainer(gradient_clip=0.5)
|
||||
trainer = Trainer(gradient_clip_val=0.5)
|
||||
```
|
||||
|
||||
---
|
||||
|
||||
@@ -38,6 +38,14 @@ trainer = Trainer(overfit_pct=0.01)
|
||||
#### Print the parameter count by layer
|
||||
By default lightning prints a list of parameters *and submodules* when it starts training.
|
||||
|
||||
``` {.python}
|
||||
# DEFAULT print a full list of all submodules and their parameters.
|
||||
trainer = Trainer(weights_summary='full')
|
||||
|
||||
# only print the top-level modules (i.e. the children of LightningModule).
|
||||
trainer = Trainer(weights_summary='top')
|
||||
```
|
||||
|
||||
---
|
||||
#### Print which gradients are nan
|
||||
This option prints a list of tensors with nan gradients.
|
||||
|
||||
+4
-14
@@ -58,16 +58,6 @@ def on_post_performance_check(self):
|
||||
```
|
||||
|
||||
---
|
||||
#### on_tng_metrics
|
||||
Called in the training loop, right before metrics are logged.
|
||||
Although you can log at any time by using self.experiment, you can use
|
||||
this callback to modify what will be logged.
|
||||
```python
|
||||
def on_tng_metrics(self, metrics):
|
||||
# do something before validation end
|
||||
```
|
||||
|
||||
---
|
||||
#### optimizer_step
|
||||
Calls .step() and .zero_grad for each optimizer.
|
||||
You can override this method to adjust how you do the optimizer step for each optimizer
|
||||
@@ -75,12 +65,12 @@ You can override this method to adjust how you do the optimizer step for each op
|
||||
Called once per optimizer
|
||||
```python
|
||||
# DEFAULT
|
||||
def optimizer_step(self, current_epoch, batch_nb, optimizer, optimizer_i):
|
||||
def optimizer_step(self, current_epoch, batch_nb, optimizer, optimizer_i, second_order_closure=None):
|
||||
optimizer.step()
|
||||
optimizer.zero_grad()
|
||||
|
||||
# Alternating schedule for optimizer steps (ie: GANs)
|
||||
def optimizer_step(self, current_epoch, batch_nb, optimizer, optimizer_i):
|
||||
def optimizer_step(self, current_epoch, batch_nb, optimizer, optimizer_i, second_order_closure=None):
|
||||
# update generator opt every 2 steps
|
||||
if optimizer_i == 0:
|
||||
if batch_nb % 2 == 0 :
|
||||
@@ -101,7 +91,7 @@ This step allows you to do a lot of non-standard training tricks such as learnin
|
||||
|
||||
```python
|
||||
# learning rate warm-up
|
||||
def optimizer_step(self, current_epoch, batch_nb, optimizer, optimizer_i):
|
||||
def optimizer_step(self, current_epoch, batch_nb, optimizer, optimizer_i, second_order_closure=None):
|
||||
# warm up lr
|
||||
if self.trainer.global_step < 500:
|
||||
lr_scale = min(1., float(self.trainer.global_step + 1) / 500.)
|
||||
@@ -137,5 +127,5 @@ def on_after_backward(self):
|
||||
for k, v in params.items():
|
||||
grads = v
|
||||
name = k
|
||||
self.experiment.add_histogram(tag=name, values=grads, global_step=self.trainer.global_step)
|
||||
self.logger.experiment.add_histogram(tag=name, values=grads, global_step=self.trainer.global_step)
|
||||
```
|
||||
|
||||
@@ -19,6 +19,7 @@ But of course the fun is in all the advanced things it can do:
|
||||
|
||||
**Checkpointing**
|
||||
|
||||
- [Checkpoint callback](https://williamfalcon.github.io/pytorch-lightning/Trainer/Checkpointing/#model-saving)
|
||||
- [Model saving](https://williamfalcon.github.io/pytorch-lightning/Trainer/Checkpointing/#model-saving)
|
||||
- [Model loading](https://williamfalcon.github.io/pytorch-lightning/LightningModule/methods/#load-from-metrics)
|
||||
- [Restoring training session](https://williamfalcon.github.io/pytorch-lightning/Trainer/Checkpointing/#restoring-training-session)
|
||||
@@ -35,7 +36,7 @@ But of course the fun is in all the advanced things it can do:
|
||||
- [Log GPU usage](https://williamfalcon.github.io/pytorch-lightning/Trainer/debugging/#Log-gpu-usage)
|
||||
- [Make model overfit on subset of data](https://williamfalcon.github.io/pytorch-lightning/Trainer/debugging/#make-model-overfit-on-subset-of-data)
|
||||
- [Print the parameter count by layer](https://williamfalcon.github.io/pytorch-lightning/Trainer/debugging/#print-the-parameter-count-by-layer)
|
||||
- [Pring which gradients are nan](https://williamfalcon.github.io/pytorch-lightning/Trainer/debugging/#print-which-gradients-are-nan)
|
||||
- [Print which gradients are nan](https://williamfalcon.github.io/pytorch-lightning/Trainer/debugging/#print-which-gradients-are-nan)
|
||||
- [Print input and output size of every module in system](https://williamfalcon.github.io/pytorch-lightning/LightningModule/properties/#example_input_array)
|
||||
|
||||
|
||||
@@ -60,8 +61,9 @@ But of course the fun is in all the advanced things it can do:
|
||||
|
||||
**Training loop**
|
||||
|
||||
- [Accumulate gradients](https://williamfalcon.github.io/pytorch-lightning/Trainer/Training%20Loop/#accumulated-gradients)
|
||||
- [Accumulate gradients](https://williamfalcon.github.io/pytorch-lightning/Trainer/Training%20Loop/#accumulated-gradients)
|
||||
- [Force training for min or max epochs](https://williamfalcon.github.io/pytorch-lightning/Trainer/Training%20Loop/#force-training-for-min-or-max-epochs)
|
||||
- [Early stopping callback](https://williamfalcon.github.io/pytorch-lightning/Trainer/Training%20Loop/#early-stopping)
|
||||
- [Force disable early stop](https://williamfalcon.github.io/pytorch-lightning/Trainer/Training%20Loop/#force-disable-early-stop)
|
||||
- [Gradient Clipping](https://williamfalcon.github.io/pytorch-lightning/Trainer/Training%20Loop/#gradient-clipping)
|
||||
- [Hooks](https://williamfalcon.github.io/pytorch-lightning/Trainer/hooks/)
|
||||
@@ -82,4 +84,4 @@ But of course the fun is in all the advanced things it can do:
|
||||
|
||||
**Testing loop**
|
||||
|
||||
- [Run test set](https://williamfalcon.github.io/pytorch-lightning/Trainer/Testing%20loop/)
|
||||
- [Run test set](https://williamfalcon.github.io/pytorch-lightning/Trainer/Testing%20loop/)
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
### Template model definition
|
||||
In 99% of cases you want to just copy [this template](https://github.com/williamFalcon/pytorch-lightning/blob/master/examples/new_project_templates/lightning_module_template.py) to start a new lightningModule and change the core of what your model is actually trying to do.
|
||||
In 99% of cases you want to just copy [one of the examples](https://github.com/williamFalcon/pytorch-lightning/tree/master/examples) to start a new lightningModule and change the core of what your model is actually trying to do.
|
||||
|
||||
```bash
|
||||
# get a copy of the module template
|
||||
@@ -47,57 +47,17 @@ def main(hparams, cluster, results_dict):
|
||||
:param hparams:
|
||||
:return:
|
||||
"""
|
||||
# init experiment
|
||||
log_dir = os.path.dirname(os.path.realpath(__file__))
|
||||
exp = Experiment(
|
||||
name='test_tube_exp',
|
||||
debug=True,
|
||||
save_dir=log_dir,
|
||||
version=0,
|
||||
autosave=False,
|
||||
description='test demo'
|
||||
)
|
||||
|
||||
# set the hparams for the experiment
|
||||
exp.argparse(hparams)
|
||||
exp.save()
|
||||
|
||||
# build model
|
||||
model = MyLightningModule(hparams)
|
||||
|
||||
# callbacks
|
||||
early_stop = EarlyStopping(
|
||||
monitor=hparams.early_stop_metric,
|
||||
patience=hparams.early_stop_patience,
|
||||
verbose=True,
|
||||
mode=hparams.early_stop_mode
|
||||
)
|
||||
|
||||
model_save_path = '{}/{}/{}'.format(hparams.model_save_path, exp.name, exp.version)
|
||||
checkpoint = ModelCheckpoint(
|
||||
filepath=model_save_path,
|
||||
save_function=None,
|
||||
save_best_only=True,
|
||||
verbose=True,
|
||||
monitor=hparams.model_save_monitor_value,
|
||||
mode=hparams.model_save_monitor_mode
|
||||
)
|
||||
|
||||
# configure trainer
|
||||
trainer = Trainer(
|
||||
experiment=exp,
|
||||
cluster=cluster,
|
||||
checkpoint_callback=checkpoint,
|
||||
early_stop_callback=early_stop,
|
||||
)
|
||||
trainer = Trainer()
|
||||
|
||||
# train model
|
||||
trainer.fit(model)
|
||||
```
|
||||
|
||||
|
||||
|
||||
|
||||
The __main__ function will start training on your **main** function. If you use the HyperParameterOptimizer
|
||||
in hyper parameter optimization mode, this main function will get one set of hyperparameters. If you use it as a simple
|
||||
argument parser you get the default arguments in the argument parser.
|
||||
|
||||
+5
-4
@@ -47,7 +47,7 @@ if use_bert:
|
||||
else:
|
||||
model = CoolerNotBERT()
|
||||
|
||||
trainer = Trainer(gpus=[0, 1, 2, 3], use_amp=True)
|
||||
trainer = Trainer(gpus=4, use_amp=True)
|
||||
trainer.fit(model)
|
||||
```
|
||||
|
||||
@@ -60,9 +60,8 @@ Notice a few things about this flow:
|
||||
###### Templates
|
||||
1. [MNIST LightningModule](https://williamfalcon.github.io/pytorch-lightning/LightningModule/RequiredTrainerInterface/#minimal-example)
|
||||
2. [Trainer](https://williamfalcon.github.io/pytorch-lightning/Trainer/)
|
||||
- [Basic CPU Trainer Template](https://github.com/williamFalcon/pytorch-lightning/blob/master/examples/new_project_templates/single_cpu_template.py)
|
||||
- [Multi-GPU Trainer Template](https://github.com/williamFalcon/pytorch-lightning/blob/master/examples/new_project_templates/single_gpu_node_template.py)
|
||||
- [GPU cluster Trainer Template](https://github.com/williamFalcon/pytorch-lightning/blob/master/examples/new_project_templates/multi_node_cluster_template.py)
|
||||
- [Basic CPU, GPU Trainer Template](https://github.com/williamFalcon/pytorch-lightning/tree/master/examples/basic_examples)
|
||||
- [GPU cluster Trainer Template](https://github.com/williamFalcon/pytorch-lightning/tree/master/examples/multi_node_examples)
|
||||
|
||||
###### Docs shortcuts
|
||||
- [LightningModule](LightningModule/RequiredTrainerInterface/)
|
||||
@@ -77,6 +76,7 @@ Notice a few things about this flow:
|
||||
|
||||
###### Checkpointing
|
||||
|
||||
- [Checkpoint callback](https://williamfalcon.github.io/pytorch-lightning/Trainer/Checkpointing/#model-saving)
|
||||
- [Model saving](https://williamfalcon.github.io/pytorch-lightning/Trainer/Checkpointing/#model-saving)
|
||||
- [Model loading](https://williamfalcon.github.io/pytorch-lightning/LightningModule/methods/#load-from-metrics)
|
||||
- [Restoring training session](https://williamfalcon.github.io/pytorch-lightning/Trainer/Checkpointing/#restoring-training-session)
|
||||
@@ -120,6 +120,7 @@ Notice a few things about this flow:
|
||||
|
||||
- [Accumulate gradients](https://williamfalcon.github.io/pytorch-lightning/Trainer/Training%20Loop/#accumulated-gradients)
|
||||
- [Force training for min or max epochs](https://williamfalcon.github.io/pytorch-lightning/Trainer/Training%20Loop/#force-training-for-min-or-max-epochs)
|
||||
- [Early stopping callback](https://williamfalcon.github.io/pytorch-lightning/Trainer/Training%20Loop/#early-stopping)
|
||||
- [Force disable early stop](https://williamfalcon.github.io/pytorch-lightning/Trainer/Training%20Loop/#force-disable-early-stop)
|
||||
- [Gradient Clipping](https://williamfalcon.github.io/pytorch-lightning/Trainer/Training%20Loop/#gradient-clipping)
|
||||
- [Hooks](https://williamfalcon.github.io/pytorch-lightning/Trainer/hooks/)
|
||||
|
||||
@@ -0,0 +1,11 @@
|
||||
# Examples
|
||||
This folder has 3 sections:
|
||||
|
||||
### Domain templates
|
||||
These are templates to show common approaches such as GANs and RL.
|
||||
|
||||
### Basic examples
|
||||
These show the most common use of Lightning for either CPU or GPU training.
|
||||
|
||||
### Multi-node examples
|
||||
These show how to run jobs on a GPU cluster using lightning.
|
||||
@@ -1,4 +1,4 @@
|
||||
from .new_project_templates.lightning_module_template import LightningTemplateModel
|
||||
from .basic_examples.lightning_module_template import LightningTemplateModel
|
||||
|
||||
__all__ = [
|
||||
'LightningTemplateModel'
|
||||
|
||||
@@ -0,0 +1,39 @@
|
||||
# Basic Examples
|
||||
Use these examples to test how lightning works.
|
||||
|
||||
#### Test on CPU
|
||||
```bash
|
||||
python cpu_template.py
|
||||
```
|
||||
|
||||
---
|
||||
#### Train on a single GPU
|
||||
```bash
|
||||
python gpu_template.py --gpus 1
|
||||
```
|
||||
|
||||
---
|
||||
#### DataParallel (dp)
|
||||
Train on multiple GPUs using DataParallel.
|
||||
|
||||
```bash
|
||||
python gpu_template.py --gpus 2 --distributed_backend dp
|
||||
```
|
||||
|
||||
---
|
||||
#### DistributedDataParallel (ddp)
|
||||
|
||||
Train on multiple GPUs using DistributedDataParallel
|
||||
```bash
|
||||
python gpu_template.py --gpus 2 --distributed_backend ddp
|
||||
```
|
||||
|
||||
---
|
||||
#### DistributedDataParallel+DP (ddp2)
|
||||
|
||||
Train on multiple GPUs using DistributedDataParallel + dataparallel.
|
||||
On a single node, uses all GPUs for 1 model. Then shares gradient information
|
||||
across nodes.
|
||||
```bash
|
||||
python gpu_template.py --gpus 2 --distributed_backend ddp2
|
||||
```
|
||||
@@ -0,0 +1,53 @@
|
||||
"""
|
||||
Runs a model on a single node across N-gpus.
|
||||
"""
|
||||
import os
|
||||
import numpy as np
|
||||
import torch
|
||||
|
||||
from argparse import ArgumentParser
|
||||
from pytorch_lightning import Trainer
|
||||
from examples.basic_examples.lightning_module_template import LightningTemplateModel
|
||||
|
||||
SEED = 2334
|
||||
torch.manual_seed(SEED)
|
||||
np.random.seed(SEED)
|
||||
|
||||
|
||||
def main(hparams):
|
||||
"""
|
||||
Main training routine specific for this project
|
||||
:param hparams:
|
||||
"""
|
||||
# ------------------------
|
||||
# 1 INIT LIGHTNING MODEL
|
||||
# ------------------------
|
||||
model = LightningTemplateModel(hparams)
|
||||
|
||||
# ------------------------
|
||||
# 2 INIT TRAINER
|
||||
# ------------------------
|
||||
trainer = Trainer()
|
||||
|
||||
# ------------------------
|
||||
# 3 START TRAINING
|
||||
# ------------------------
|
||||
trainer.fit(model)
|
||||
|
||||
|
||||
if __name__ == '__main__':
|
||||
# ------------------------
|
||||
# TRAINING ARGUMENTS
|
||||
# ------------------------
|
||||
# these are project-wide arguments
|
||||
root_dir = os.path.dirname(os.path.realpath(__file__))
|
||||
parent_parser = ArgumentParser(add_help=False)
|
||||
|
||||
# each LightningModule defines arguments relevant to it
|
||||
parser = LightningTemplateModel.add_model_specific_args(parent_parser, root_dir)
|
||||
hyperparams = parser.parse_args()
|
||||
|
||||
# ---------------------
|
||||
# RUN TRAINING
|
||||
# ---------------------
|
||||
main(hyperparams)
|
||||
@@ -0,0 +1,78 @@
|
||||
"""
|
||||
Runs a model on a single node across N-gpus.
|
||||
"""
|
||||
import os
|
||||
import numpy as np
|
||||
import torch
|
||||
|
||||
from argparse import ArgumentParser
|
||||
from pytorch_lightning import Trainer
|
||||
from examples.basic_examples.lightning_module_template import LightningTemplateModel
|
||||
|
||||
SEED = 2334
|
||||
torch.manual_seed(SEED)
|
||||
np.random.seed(SEED)
|
||||
|
||||
|
||||
def main(hparams):
|
||||
"""
|
||||
Main training routine specific for this project
|
||||
:param hparams:
|
||||
"""
|
||||
# ------------------------
|
||||
# 1 INIT LIGHTNING MODEL
|
||||
# ------------------------
|
||||
model = LightningTemplateModel(hparams)
|
||||
|
||||
# ------------------------
|
||||
# 2 INIT TRAINER
|
||||
# ------------------------
|
||||
trainer = Trainer(
|
||||
gpus=hparams.gpus,
|
||||
distributed_backend=hparams.distributed_backend,
|
||||
use_amp=hparams.use_16bit
|
||||
)
|
||||
|
||||
# ------------------------
|
||||
# 3 START TRAINING
|
||||
# ------------------------
|
||||
trainer.fit(model)
|
||||
|
||||
|
||||
if __name__ == '__main__':
|
||||
# ------------------------
|
||||
# TRAINING ARGUMENTS
|
||||
# ------------------------
|
||||
# these are project-wide arguments
|
||||
|
||||
root_dir = os.path.dirname(os.path.realpath(__file__))
|
||||
parent_parser = ArgumentParser(add_help=False)
|
||||
|
||||
# gpu args
|
||||
parent_parser.add_argument(
|
||||
'--gpus',
|
||||
type=int,
|
||||
default=2,
|
||||
help='how many gpus'
|
||||
)
|
||||
parent_parser.add_argument(
|
||||
'--distributed_backend',
|
||||
type=str,
|
||||
default='dp',
|
||||
help='supports three options dp, ddp, ddp2'
|
||||
)
|
||||
parent_parser.add_argument(
|
||||
'--use_16bit',
|
||||
dest='use_16bit',
|
||||
action='store_true',
|
||||
help='if true uses 16 bit precision'
|
||||
)
|
||||
|
||||
# each LightningModule defines arguments relevant to it
|
||||
parser = LightningTemplateModel.add_model_specific_args(parent_parser, root_dir)
|
||||
hyperparams = parser.parse_args()
|
||||
|
||||
# ---------------------
|
||||
# RUN TRAINING
|
||||
# ---------------------
|
||||
main(hyperparams)
|
||||
+29
-33
@@ -8,7 +8,7 @@ from torchvision.datasets import MNIST
|
||||
import torchvision.transforms as transforms
|
||||
import torch
|
||||
import torch.nn.functional as F
|
||||
from test_tube import HyperOptArgumentParser
|
||||
from argparse import ArgumentParser
|
||||
from torch import optim
|
||||
from torch.utils.data import DataLoader
|
||||
from torch.utils.data.distributed import DistributedSampler
|
||||
@@ -79,14 +79,14 @@ class LightningTemplateModel(LightningModule):
|
||||
nll = F.nll_loss(logits, labels)
|
||||
return nll
|
||||
|
||||
def training_step(self, data_batch, batch_i):
|
||||
def training_step(self, batch, batch_idx):
|
||||
"""
|
||||
Lightning calls this inside the training loop
|
||||
:param data_batch:
|
||||
:param batch:
|
||||
:return:
|
||||
"""
|
||||
# forward pass
|
||||
x, y = data_batch
|
||||
x, y = batch
|
||||
x = x.view(x.size(0), -1)
|
||||
|
||||
y_hat = self.forward(x)
|
||||
@@ -95,23 +95,26 @@ class LightningTemplateModel(LightningModule):
|
||||
loss_val = self.loss(y, y_hat)
|
||||
|
||||
# in DP mode (default) make sure if result is scalar, there's another dim in the beginning
|
||||
if self.trainer.use_dp:
|
||||
if self.trainer.use_dp or self.trainer.use_ddp2:
|
||||
loss_val = loss_val.unsqueeze(0)
|
||||
|
||||
tqdm_dict = {'train_loss': loss_val}
|
||||
output = OrderedDict({
|
||||
'loss': loss_val
|
||||
'loss': loss_val,
|
||||
'progress_bar': tqdm_dict,
|
||||
'log': tqdm_dict
|
||||
})
|
||||
|
||||
# can also return just a scalar instead of a dict (return loss_val)
|
||||
return output
|
||||
|
||||
def validation_step(self, data_batch, batch_i):
|
||||
def validation_step(self, batch, batch_idx):
|
||||
"""
|
||||
Lightning calls this inside the validation loop
|
||||
:param data_batch:
|
||||
:param batch:
|
||||
:return:
|
||||
"""
|
||||
x, y = data_batch
|
||||
x, y = batch
|
||||
x = x.view(x.size(0), -1)
|
||||
y_hat = self.forward(x)
|
||||
|
||||
@@ -126,7 +129,7 @@ class LightningTemplateModel(LightningModule):
|
||||
val_acc = val_acc.cuda(loss_val.device.index)
|
||||
|
||||
# in DP mode (default) make sure if result is scalar, there's another dim in the beginning
|
||||
if self.trainer.use_dp:
|
||||
if self.trainer.use_dp or self.trainer.use_ddp2:
|
||||
loss_val = loss_val.unsqueeze(0)
|
||||
val_acc = val_acc.unsqueeze(0)
|
||||
|
||||
@@ -160,15 +163,16 @@ class LightningTemplateModel(LightningModule):
|
||||
|
||||
# reduce manually when using dp
|
||||
val_acc = output['val_acc']
|
||||
if self.trainer.use_dp:
|
||||
if self.trainer.use_dp or self.trainer.use_ddp2:
|
||||
val_acc = torch.mean(val_acc)
|
||||
|
||||
val_acc_mean += val_acc
|
||||
|
||||
val_loss_mean /= len(outputs)
|
||||
val_acc_mean /= len(outputs)
|
||||
tqdm_dic = {'val_loss': val_loss_mean, 'val_acc': val_acc_mean}
|
||||
return tqdm_dic
|
||||
tqdm_dict = {'val_loss': val_loss_mean, 'val_acc': val_acc_mean}
|
||||
result = {'progress_bar': tqdm_dict, 'log': tqdm_dict}
|
||||
return result
|
||||
|
||||
# ---------------------
|
||||
# TRAINING SETUP
|
||||
@@ -189,27 +193,27 @@ class LightningTemplateModel(LightningModule):
|
||||
dataset = MNIST(root=self.hparams.data_root, train=train,
|
||||
transform=transform, download=True)
|
||||
|
||||
# when using multi-node (ddp) we need to add the datasampler
|
||||
# when using multi-node (ddp) we need to add the datasampler
|
||||
train_sampler = None
|
||||
batch_size = self.hparams.batch_size
|
||||
|
||||
if self.use_ddp:
|
||||
train_sampler = DistributedSampler(dataset, rank=self.trainer.proc_rank)
|
||||
batch_size = batch_size // self.trainer.world_size # scale batch size
|
||||
train_sampler = DistributedSampler(dataset)
|
||||
|
||||
should_shuffle = train_sampler is None
|
||||
loader = DataLoader(
|
||||
dataset=dataset,
|
||||
batch_size=batch_size,
|
||||
shuffle=should_shuffle,
|
||||
sampler=train_sampler
|
||||
sampler=train_sampler,
|
||||
num_workers=0
|
||||
)
|
||||
|
||||
return loader
|
||||
|
||||
@pl.data_loader
|
||||
def tng_dataloader(self):
|
||||
print('tng data loader called')
|
||||
def train_dataloader(self):
|
||||
print('training data loader called')
|
||||
return self.__dataloader(train=True)
|
||||
|
||||
@pl.data_loader
|
||||
@@ -230,31 +234,23 @@ class LightningTemplateModel(LightningModule):
|
||||
:param root_dir:
|
||||
:return:
|
||||
"""
|
||||
parser = HyperOptArgumentParser(strategy=parent_parser.strategy, parents=[parent_parser])
|
||||
parser = ArgumentParser(parents=[parent_parser])
|
||||
|
||||
# param overwrites
|
||||
# parser.set_defaults(gradient_clip=5.0)
|
||||
# parser.set_defaults(gradient_clip_val=5.0)
|
||||
|
||||
# network params
|
||||
parser.add_argument('--in_features', default=28 * 28, type=int)
|
||||
parser.add_argument('--out_features', default=10, type=int)
|
||||
# use 500 for CPU, 50000 for GPU to see speed difference
|
||||
parser.add_argument('--hidden_dim', default=50000, type=int)
|
||||
parser.opt_list('--drop_prob', default=0.2, options=[0.2, 0.5], type=float, tunable=True)
|
||||
parser.opt_list('--learning_rate', default=0.001 * 8, type=float,
|
||||
options=[0.0001, 0.0005, 0.001],
|
||||
tunable=True)
|
||||
parser.add_argument('--drop_prob', default=0.2, type=float)
|
||||
parser.add_argument('--learning_rate', default=0.001, type=float)
|
||||
|
||||
# data
|
||||
parser.add_argument('--data_root', default=os.path.join(root_dir, 'mnist'), type=str)
|
||||
|
||||
# training params (opt)
|
||||
parser.opt_list('--optimizer_name', default='adam', type=str,
|
||||
options=['adam'], tunable=False)
|
||||
|
||||
# if using 2 nodes with 4 gpus each the batch size here
|
||||
# (256) will be 256 / (2*8) = 16 per gpu
|
||||
parser.opt_list('--batch_size', default=256 * 8, type=int,
|
||||
options=[32, 64, 128, 256], tunable=False,
|
||||
help='batch size will be divided over all gpus being used across all nodes')
|
||||
parser.add_argument('--optimizer_name', default='adam', type=str)
|
||||
parser.add_argument('--batch_size', default=64, type=int)
|
||||
return parser
|
||||
@@ -109,7 +109,7 @@ class GAN(pl.LightningModule):
|
||||
# log sampled images
|
||||
sample_imgs = self.generated_imgs[:6]
|
||||
grid = torchvision.utils.make_grid(sample_imgs)
|
||||
self.experiment.add_image('generated_images', grid, 0)
|
||||
self.logger.experiment.add_image('generated_images', grid, 0)
|
||||
|
||||
# ground truth result (ie: all fake)
|
||||
valid = torch.ones(imgs.size(0), 1)
|
||||
@@ -146,7 +146,7 @@ class GAN(pl.LightningModule):
|
||||
return [opt_g, opt_d], []
|
||||
|
||||
@pl.data_loader
|
||||
def tng_dataloader(self):
|
||||
def train_dataloader(self):
|
||||
transform = transforms.Compose([transforms.ToTensor(),
|
||||
transforms.Normalize([0.5], [0.5])])
|
||||
dataset = MNIST(os.getcwd(), train=True, download=True, transform=transform)
|
||||
@@ -0,0 +1,21 @@
|
||||
# Multi-node example
|
||||
|
||||
This demo launches a job using 2 GPUs on 2 different nodes (4 GPUs total).
|
||||
To run this demo do the following:
|
||||
|
||||
1. Log into the jumphost node of your SLURM-managed cluster.
|
||||
2. Create a conda environment with Lightning and a GPU PyTorch version.
|
||||
3. Choose a script to submit
|
||||
|
||||
#### DDP
|
||||
Submit this job to run with distributedDataParallel (2 nodes, 2 gpus each)
|
||||
```bash
|
||||
sbatch ddp_job_submit.sh YourEnv
|
||||
```
|
||||
|
||||
#### DDP2
|
||||
Submit this job to run with a different implementation of distributedDataParallel.
|
||||
In this version, each node acts like DataParallel but syncs across nodes like DDP.
|
||||
```bash
|
||||
sbatch ddp2_job_submit.sh YourEnv
|
||||
```
|
||||
+7
-10
@@ -1,19 +1,19 @@
|
||||
#!/bin/bash -l
|
||||
|
||||
# SLURM SUBMIT SCRIPT
|
||||
#SBATCH --nodes=4
|
||||
#SBATCH --gres=gpu:4
|
||||
#SBATCH --ntasks-per-node=4
|
||||
#SBATCH --nodes=2
|
||||
#SBATCH --gres=gpu:2
|
||||
#SBATCH --ntasks-per-node=1
|
||||
#SBATCH --mem=0
|
||||
#SBATCH --time=0-02:00:00
|
||||
|
||||
# activate conda env
|
||||
conda activate my_env
|
||||
source activate $1
|
||||
|
||||
# -------------------------
|
||||
# debugging flags (optional)
|
||||
# export NCCL_DEBUG=INFO
|
||||
# export PYTHONFAULTHANDLER=1
|
||||
export NCCL_DEBUG=INFO
|
||||
export PYTHONFAULTHANDLER=1
|
||||
|
||||
# on your cluster you might need these:
|
||||
# set the network interface
|
||||
@@ -23,8 +23,5 @@ conda activate my_env
|
||||
# module load NCCL/2.4.7-1-cuda.10.0
|
||||
# -------------------------
|
||||
|
||||
# random port between 12k and 20k
|
||||
export MASTER_PORT=$((12000 + RANDOM % 20000))
|
||||
|
||||
# run script from above
|
||||
python minimal_multi_node_demo.py
|
||||
srun python3 multi_node_ddp2_demo.py
|
||||
+27
@@ -0,0 +1,27 @@
|
||||
#!/bin/bash -l
|
||||
|
||||
# SLURM SUBMIT SCRIPT
|
||||
#SBATCH --nodes=2
|
||||
#SBATCH --gres=gpu:2
|
||||
#SBATCH --ntasks-per-node=2
|
||||
#SBATCH --mem=0
|
||||
#SBATCH --time=0-02:00:00
|
||||
|
||||
# activate conda env
|
||||
source activate $1
|
||||
|
||||
# -------------------------
|
||||
# debugging flags (optional)
|
||||
export NCCL_DEBUG=INFO
|
||||
export PYTHONFAULTHANDLER=1
|
||||
|
||||
# on your cluster you might need these:
|
||||
# set the network interface
|
||||
# export NCCL_SOCKET_IFNAME=^docker0,lo
|
||||
|
||||
# might need the latest cuda
|
||||
# module load NCCL/2.4.7-1-cuda.10.0
|
||||
# -------------------------
|
||||
|
||||
# run script from above
|
||||
srun python3 multi_node_ddp_demo.py
|
||||
+9
-24
@@ -5,9 +5,9 @@ import os
|
||||
import numpy as np
|
||||
import torch
|
||||
|
||||
from test_tube import HyperOptArgumentParser, Experiment
|
||||
from argparse import ArgumentParser
|
||||
from pytorch_lightning import Trainer
|
||||
from examples.new_project_templates.lightning_module_template import LightningTemplateModel
|
||||
from examples.basic_examples.lightning_module_template import LightningTemplateModel
|
||||
|
||||
SEED = 2334
|
||||
torch.manual_seed(SEED)
|
||||
@@ -25,42 +25,27 @@ def main(hparams):
|
||||
# ------------------------
|
||||
model = LightningTemplateModel(hparams)
|
||||
|
||||
# ------------------------
|
||||
# 2 INIT TEST TUBE EXP
|
||||
# ------------------------
|
||||
# init experiment
|
||||
exp = Experiment(
|
||||
name='test_exp',
|
||||
save_dir=hyperparams.log_dir,
|
||||
autosave=False,
|
||||
description='test demo'
|
||||
)
|
||||
|
||||
# ------------------------
|
||||
# 2 INIT TRAINER
|
||||
# ------------------------
|
||||
trainer = Trainer(
|
||||
experiment=exp,
|
||||
gpus=8,
|
||||
nb_gpu_nodes=2
|
||||
gpus=2,
|
||||
nb_gpu_nodes=2,
|
||||
distributed_backend='ddp2'
|
||||
)
|
||||
|
||||
# ------------------------
|
||||
# 5 START TRAINING
|
||||
# 3 START TRAINING
|
||||
# ------------------------
|
||||
trainer.fit(model)
|
||||
|
||||
|
||||
if __name__ == '__main__':
|
||||
# use current dir for logging
|
||||
|
||||
root_dir = os.path.dirname(os.path.realpath(__file__))
|
||||
log_dir = os.path.join(root_dir, 'pt_lightning_demo_logs')
|
||||
parent_parser = ArgumentParser(add_help=False)
|
||||
|
||||
parent_parser = HyperOptArgumentParser(strategy='grid_search', add_help=False)
|
||||
parent_parser.add_argument('--log_dir', type=str, default=log_dir,
|
||||
help='where to save logs')
|
||||
|
||||
# allow model to overwrite or extend args
|
||||
# each LightningModule defines arguments relevant to it
|
||||
parser = LightningTemplateModel.add_model_specific_args(parent_parser, root_dir)
|
||||
hyperparams = parser.parse_args()
|
||||
|
||||
@@ -0,0 +1,55 @@
|
||||
"""
|
||||
Multi-node example (GPU)
|
||||
"""
|
||||
import os
|
||||
import numpy as np
|
||||
import torch
|
||||
|
||||
from argparse import ArgumentParser
|
||||
from pytorch_lightning import Trainer
|
||||
from examples.basic_examples.lightning_module_template import LightningTemplateModel
|
||||
|
||||
SEED = 2334
|
||||
torch.manual_seed(SEED)
|
||||
np.random.seed(SEED)
|
||||
|
||||
|
||||
def main(hparams):
|
||||
"""
|
||||
Main training routine specific for this project
|
||||
:param hparams:
|
||||
:return:
|
||||
"""
|
||||
# ------------------------
|
||||
# 1 INIT LIGHTNING MODEL
|
||||
# ------------------------
|
||||
model = LightningTemplateModel(hparams)
|
||||
|
||||
# ------------------------
|
||||
# 2 INIT TRAINER
|
||||
# ------------------------
|
||||
trainer = Trainer(
|
||||
gpus=2,
|
||||
nb_gpu_nodes=2,
|
||||
distributed_backend='ddp'
|
||||
)
|
||||
|
||||
# ------------------------
|
||||
# 3 START TRAINING
|
||||
# ------------------------
|
||||
trainer.fit(model)
|
||||
|
||||
|
||||
if __name__ == '__main__':
|
||||
|
||||
root_dir = os.path.dirname(os.path.realpath(__file__))
|
||||
parent_parser = ArgumentParser(add_help=False)
|
||||
|
||||
# each LightningModule defines arguments relevant to it
|
||||
parser = LightningTemplateModel.add_model_specific_args(parent_parser, root_dir)
|
||||
hyperparams = parser.parse_args()
|
||||
|
||||
# ---------------------
|
||||
# RUN TRAINING
|
||||
# ---------------------
|
||||
main(hyperparams)
|
||||
@@ -1,107 +0,0 @@
|
||||
# Multi-node examples
|
||||
Use these templates for multi-node training.
|
||||
The main complexity around cluster training is how you submit the SLURM jobs.
|
||||
|
||||
## Test-tube
|
||||
Lightning uses test-tube to submit SLURM jobs and to run hyperparameter searches on a cluster.
|
||||
|
||||
To run a hyperparameter search, we normally add the values to search to the Hyperparameter optimizer
|
||||
```python
|
||||
from test_tube import HyperOptArgumentParser
|
||||
|
||||
parser = HyperOptArgumentParser(strategy='grid_search')
|
||||
parser.opt_list('--drop_prob', default=0.2, options=[0.2, 0.5], type=float, tunable=True)
|
||||
parser.opt_list('--learning_rate', default=0.001, type=float,
|
||||
options=[0.0001, 0.0005, 0.001],
|
||||
tunable=True)
|
||||
|
||||
# give your model a chance to add its own parameters
|
||||
parser = LightningTemplateModel.add_model_specific_args(parent_parser, root_dir)
|
||||
|
||||
# parse args
|
||||
hyperparams = parser.parse_args()
|
||||
```
|
||||
|
||||
The above sets up a grid search on learning rate and drop probability. You can now add this object to the
|
||||
cluster object to perform the grid search:
|
||||
```python
|
||||
cluster = SlurmCluster(
|
||||
hyperparam_optimizer=hyperparams,
|
||||
log_path='/path/to/log/slurm/files',
|
||||
)
|
||||
|
||||
# ... configure cluster options
|
||||
|
||||
# run grid search on cluster
|
||||
nb_trials = 6 # (2 drop probs * 3 lrs)
|
||||
cluster.optimize_parallel_cluster_gpu(
|
||||
YourMainFunction,
|
||||
nb_trials=nb_trials,
|
||||
job_name=hyperparams.experiment_name
|
||||
)
|
||||
```
|
||||
|
||||
Running the above will launch 6 jobs, each with a different drop prob and learning rate combination.
|
||||
The ```tunable``` parameter must be set to True to add that argument to the space of options, otherwise
|
||||
Test-Tube will use the ```default=value```.
|
||||
|
||||
|
||||
## SLURM Flags
|
||||
However you decide to submit your jobs, debugging requires a few flags. Without these flags, you'll
|
||||
see a nccl error instead of the actual error which caused the bug.
|
||||
|
||||
```sh
|
||||
export NCCL_DEBUG=INFO
|
||||
export PYTHONFAULTHANDLER=1
|
||||
```
|
||||
|
||||
On some clusters you might need to set the network interface with this flag.
|
||||
```sh
|
||||
export NCCL_SOCKET_IFNAME=^docker0,lo
|
||||
```
|
||||
|
||||
You might also need to load the latest version of NCCL
|
||||
```sh
|
||||
module load NCCL/2.4.7-1-cuda.10.0
|
||||
```
|
||||
|
||||
Finally, you must set the master port (usually a random number between 12k and 20k).
|
||||
```sh
|
||||
# random port between 12k and 20k
|
||||
export MASTER_PORT=$((12000 + RANDOM % 20000))$
|
||||
```
|
||||
|
||||
## Simplest example.
|
||||
1. Modify this script with your CoolModel file.
|
||||
2. Update and submit [this bash script](https://github.com/williamFalcon/pytorch-lightning/blob/master/examples/new_project_templates/multi_node_examples/minimal_multi_node_demo_script.sh)
|
||||
```bash
|
||||
squeue minimal_multi_node_demo_script.sh
|
||||
```
|
||||
|
||||
## Grid search on a cluster
|
||||
|
||||
#### Option 1: Run on cluster using your own SLURM script
|
||||
The trainer and model will work on a cluster if you configure your SLURM script correctly.
|
||||
|
||||
1. Update [this demo slurm script](https://github.com/williamFalcon/pytorch-lightning/blob/master/examples/new_project_templates/multi_node_examples/demo_script.sh).
|
||||
2. Submit the script
|
||||
```bash
|
||||
$ squeue demo_script.sh
|
||||
```
|
||||
|
||||
Most people have some way they automatically generate their own scripts.
|
||||
To run a grid search this way, you'd need a way to automatically generate scripts using all the combinations of
|
||||
hyperparameters to search over.
|
||||
|
||||
#### Option 2: Use test-tube for SLURM script
|
||||
With test tube we can automatically generate slurm scripts for different hyperparameter options.
|
||||
|
||||
To run this demo:
|
||||
```bash
|
||||
source activate YourCondaEnv
|
||||
|
||||
python multi_node_cluster_auto_slurm.py --email your@email.com --gpu_partition your_partition --conda_env YourCondaEnv
|
||||
```
|
||||
|
||||
That will submit 6 jobs. Each job will have a specific combination of hyperparams. Each job will also run on 2 nodes
|
||||
where each node has 8 gpus.
|
||||
@@ -1,66 +0,0 @@
|
||||
#!/bin/bash
|
||||
#
|
||||
# Auto-generated by test-tube (https://github.com/williamFalcon/test-tube)
|
||||
#################
|
||||
|
||||
# set a job name
|
||||
#SBATCH --job-name=lightning_test
|
||||
#################
|
||||
|
||||
# a file for job output, you can check job progress
|
||||
#SBATCH --output=/slurm_output_%j.out
|
||||
#################
|
||||
|
||||
# a file for errors
|
||||
#SBATCH --error=/slurm_output_%j.err
|
||||
#################
|
||||
|
||||
# time needed for job
|
||||
#SBATCH --time=01:00:00
|
||||
#################
|
||||
|
||||
# gpus per node
|
||||
#SBATCH --gres=gpu:8
|
||||
#################
|
||||
|
||||
# cpus per job
|
||||
#SBATCH --cpus-per-task=10
|
||||
#################
|
||||
|
||||
# number of requested nodes
|
||||
#SBATCH --nodes=2
|
||||
#################
|
||||
|
||||
# memory per node (0 means all)
|
||||
#SBATCH --mem=0
|
||||
#################
|
||||
|
||||
# slurm will send a signal this far out before it kills the job
|
||||
#SBATCH --signal=USR1@300
|
||||
#################
|
||||
|
||||
# comment
|
||||
#SBATCH --comment=lightning_demo
|
||||
#################
|
||||
|
||||
# 1 task per gpu
|
||||
#SBATCH --ntasks-per-node=8
|
||||
#################
|
||||
|
||||
source activate YourEnv
|
||||
|
||||
# debugging flags (optional)
|
||||
export NCCL_DEBUG=INFO
|
||||
export PYTHONFAULTHANDLER=1
|
||||
|
||||
# on your cluster you might need these:
|
||||
# set the network interface
|
||||
export NCCL_SOCKET_IFNAME=^docker0,lo
|
||||
|
||||
# might need the latest cuda
|
||||
module load NCCL/2.4.7-1-cuda.10.0
|
||||
|
||||
# random port between 12k and 20k
|
||||
export MASTER_PORT=$((12000 + RANDOM % 20000))$
|
||||
|
||||
srun python multi_node_own_slurm_script.py
|
||||
@@ -1,24 +0,0 @@
|
||||
from pytorch_lightning import Trainer
|
||||
from test_tube import Experiment
|
||||
import os
|
||||
|
||||
|
||||
def main():
|
||||
# use the cool model from the main README.md
|
||||
model = CoolModel() # noqa: F821
|
||||
exp = Experiment(save_dir=os.getcwd())
|
||||
|
||||
# train on 4 GPUs across 4 nodes
|
||||
trainer = Trainer(
|
||||
experiment=exp,
|
||||
distributed_backend='ddp',
|
||||
max_nb_epochs=10,
|
||||
gpus=4,
|
||||
nb_gpu_nodes=4
|
||||
)
|
||||
|
||||
trainer.fit(model)
|
||||
|
||||
|
||||
if __name__ == '__main__':
|
||||
main()
|
||||
@@ -1,191 +0,0 @@
|
||||
"""
|
||||
Multi-node example (GPU)
|
||||
"""
|
||||
import os
|
||||
import numpy as np
|
||||
from time import sleep
|
||||
import torch
|
||||
|
||||
from test_tube import HyperOptArgumentParser, Experiment, SlurmCluster
|
||||
from pytorch_lightning import Trainer
|
||||
from pytorch_lightning.callbacks import EarlyStopping, ModelCheckpoint
|
||||
|
||||
from examples.new_project_templates.lightning_module_template import LightningTemplateModel
|
||||
|
||||
PORT = np.random.randint(12000, 20000, 1)[0]
|
||||
SEED = 2334
|
||||
torch.manual_seed(SEED)
|
||||
np.random.seed(SEED)
|
||||
|
||||
|
||||
def main_local(hparams):
|
||||
main(hparams, None, None)
|
||||
|
||||
|
||||
def main(hparams, cluster):
|
||||
"""
|
||||
Main training routine specific for this project
|
||||
:param hparams:
|
||||
:return:
|
||||
"""
|
||||
# ------------------------
|
||||
# 1 INIT LIGHTNING MODEL
|
||||
# ------------------------
|
||||
print('loading model...')
|
||||
model = LightningTemplateModel(hparams)
|
||||
print('model built')
|
||||
|
||||
# ------------------------
|
||||
# 2 INIT TEST TUBE EXP
|
||||
# ------------------------
|
||||
# when using grid search, it's possible for all models to start at once
|
||||
# and use the same test tube experiment version
|
||||
relative_node_id = int(os.environ['SLURM_NODEID'])
|
||||
sleep(relative_node_id + 1)
|
||||
|
||||
# init experiment
|
||||
exp = Experiment(
|
||||
name=hyperparams.experiment_name,
|
||||
save_dir=hyperparams.test_tube_save_path,
|
||||
autosave=False,
|
||||
version=hparams.hpc_exp_number, # match the slurm job version number
|
||||
description='test demo'
|
||||
)
|
||||
|
||||
exp.argparse(hparams)
|
||||
exp.save()
|
||||
|
||||
# ------------------------
|
||||
# 3 DEFINE CALLBACKS
|
||||
# ------------------------
|
||||
model_save_path = '{}/{}/{}'.format(hparams.model_save_path, exp.name, exp.version)
|
||||
early_stop = EarlyStopping(
|
||||
monitor='val_acc',
|
||||
patience=3,
|
||||
verbose=True,
|
||||
mode='max'
|
||||
)
|
||||
|
||||
checkpoint = ModelCheckpoint(
|
||||
filepath=model_save_path,
|
||||
save_best_only=True,
|
||||
verbose=True,
|
||||
monitor='val_loss',
|
||||
mode='min'
|
||||
)
|
||||
|
||||
# ------------------------
|
||||
# 4 INIT TRAINER
|
||||
# ------------------------
|
||||
trainer = Trainer(
|
||||
experiment=exp,
|
||||
checkpoint_callback=checkpoint,
|
||||
early_stop_callback=early_stop,
|
||||
gpus=hparams.per_experiment_nb_gpus,
|
||||
nb_gpu_nodes=hyperparams.nb_gpu_nodes
|
||||
)
|
||||
|
||||
# ------------------------
|
||||
# 5 START TRAINING
|
||||
# ------------------------
|
||||
trainer.fit(model)
|
||||
|
||||
|
||||
def optimize_on_cluster(hyperparams):
|
||||
# enable cluster training
|
||||
# log all scripts to the test tube folder
|
||||
cluster = SlurmCluster(
|
||||
hyperparam_optimizer=hyperparams,
|
||||
log_path=hyperparams.slurm_log_path,
|
||||
)
|
||||
|
||||
# email for cluster coms
|
||||
cluster.notify_job_status(email=hyperparams.email, on_done=True, on_fail=True)
|
||||
|
||||
# configure cluster
|
||||
cluster.per_experiment_nb_gpus = hyperparams.per_experiment_nb_gpus
|
||||
cluster.per_experiment_nb_nodes = hyperparams.nb_gpu_nodes
|
||||
cluster.job_time = '2:00:00'
|
||||
cluster.gpu_type = 'volta'
|
||||
cluster.memory_mb_per_node = 0
|
||||
|
||||
# any modules for code to run in env
|
||||
cluster.add_command(f'source activate {hyperparams.conda_env}')
|
||||
|
||||
# set DDP master port
|
||||
cluster.add_command(f'export MASTER_PORT={PORT}')
|
||||
|
||||
# OPTIONAL for debugging
|
||||
# without these flags errors in your code will
|
||||
# appear to be nccl errors
|
||||
cluster.add_command('export NCCL_DEBUG=INFO')
|
||||
cluster.add_command('export PYTHONFAULTHANDLER=1')
|
||||
|
||||
# depending on your cluster config, you probably want
|
||||
# to limit the wired connection device
|
||||
# cluster.add_command('export NCCL_SOCKET_IFNAME=^docker0,lo')
|
||||
|
||||
# depending on your cluster, you might need to load
|
||||
# the latest NCCL version
|
||||
# cluster.load_modules(['NCCL/2.4.7-1-cuda.10.0'])
|
||||
|
||||
# run only on 32GB voltas
|
||||
cluster.add_slurm_cmd(cmd='constraint', value='volta32gb',
|
||||
comment='use 32gb gpus')
|
||||
cluster.add_slurm_cmd(cmd='partition', value=hyperparams.gpu_partition,
|
||||
comment='use 32gb gpus')
|
||||
|
||||
# run hopt
|
||||
# creates and submits jobs to slurm
|
||||
cluster.optimize_parallel_cluster_gpu(
|
||||
main,
|
||||
nb_trials=hyperparams.num_hyperparam_trials,
|
||||
job_name=hyperparams.experiment_name
|
||||
)
|
||||
|
||||
|
||||
if __name__ == '__main__':
|
||||
|
||||
# use default args
|
||||
root_dir = os.path.dirname(os.path.realpath(__file__))
|
||||
demo_log_dir = os.path.join(root_dir, 'pt_lightning_demo_logs')
|
||||
|
||||
checkpoint_dir = os.path.join(demo_log_dir, 'model_weights')
|
||||
test_tube_dir = os.path.join(demo_log_dir, 'test_tube_data')
|
||||
slurm_out_dir = os.path.join(demo_log_dir, 'slurm_scripts')
|
||||
|
||||
parent_parser = HyperOptArgumentParser(strategy='grid_search', add_help=False)
|
||||
|
||||
# cluster args not defined inside the model
|
||||
|
||||
parent_parser.add_argument('--per_experiment_nb_gpus', type=int,
|
||||
default=8, help='how many gpus to use in a node')
|
||||
parent_parser.add_argument('--nb_gpu_nodes', type=int, default=2,
|
||||
help='how many nodes to use in a cluster')
|
||||
parent_parser.add_argument('--test_tube_save_path', type=str, default=test_tube_dir,
|
||||
help='where to save logs')
|
||||
parent_parser.add_argument('--slurm_log_path', type=str, default=slurm_out_dir,
|
||||
help='where to save slurm meta')
|
||||
parent_parser.add_argument('--model_save_path', type=str, default=checkpoint_dir,
|
||||
help='where to save model')
|
||||
parent_parser.add_argument('--experiment_name', type=str, default='pt_lightning_exp_a',
|
||||
help='test tube exp name')
|
||||
parent_parser.add_argument('--num_hyperparam_trials', type=int, default=6,
|
||||
help='how many grid search trials to run')
|
||||
|
||||
parent_parser.add_argument('--email', type=str, default='add@email.com',
|
||||
help='email for jobs')
|
||||
parent_parser.add_argument('--conda_env', type=str, default='base',
|
||||
help='email for jobs')
|
||||
parent_parser.add_argument('--gpu_partition', type=str, help='consult your cluster manual')
|
||||
|
||||
# allow model to overwrite or extend args
|
||||
parser = LightningTemplateModel.add_model_specific_args(parent_parser, root_dir)
|
||||
hyperparams = parser.parse_args()
|
||||
|
||||
# ---------------------
|
||||
# RUN TRAINING
|
||||
# ---------------------
|
||||
# run on HPC cluster
|
||||
print('RUNNING ON SLURM CLUSTER')
|
||||
optimize_on_cluster(hyperparams)
|
||||
@@ -1,106 +0,0 @@
|
||||
"""
|
||||
Runs a model on a single node on CPU only..
|
||||
"""
|
||||
import os
|
||||
import numpy as np
|
||||
import torch
|
||||
|
||||
from test_tube import HyperOptArgumentParser, Experiment
|
||||
from pytorch_lightning import Trainer
|
||||
from pytorch_lightning.callbacks import EarlyStopping, ModelCheckpoint
|
||||
|
||||
from examples.new_project_templates.lightning_module_template import LightningTemplateModel
|
||||
|
||||
SEED = 2334
|
||||
torch.manual_seed(SEED)
|
||||
np.random.seed(SEED)
|
||||
|
||||
|
||||
def main(hparams):
|
||||
"""
|
||||
Main training routine specific for this project
|
||||
:param hparams:
|
||||
:return:
|
||||
"""
|
||||
# ------------------------
|
||||
# 1 INIT LIGHTNING MODEL
|
||||
# ------------------------
|
||||
model = LightningTemplateModel(hparams)
|
||||
|
||||
# ------------------------
|
||||
# 2 INIT EXP
|
||||
# ------------------------
|
||||
# init experiment
|
||||
exp = Experiment(
|
||||
name=hyperparams.experiment_name,
|
||||
save_dir=hyperparams.test_tube_save_path,
|
||||
autosave=False,
|
||||
description='test demo'
|
||||
)
|
||||
|
||||
exp.argparse(hparams)
|
||||
exp.save()
|
||||
|
||||
# ------------------------
|
||||
# 3 DEFINE CALLBACKS
|
||||
# ------------------------
|
||||
model_save_path = '{}/{}/{}'.format(hparams.model_save_path, exp.name, exp.version)
|
||||
early_stop = EarlyStopping(
|
||||
monitor='val_acc',
|
||||
patience=3,
|
||||
verbose=True,
|
||||
mode='max'
|
||||
)
|
||||
|
||||
checkpoint = ModelCheckpoint(
|
||||
filepath=model_save_path,
|
||||
save_best_only=True,
|
||||
verbose=True,
|
||||
monitor='val_loss',
|
||||
mode='min'
|
||||
)
|
||||
|
||||
# ------------------------
|
||||
# 4 INIT TRAINER
|
||||
# ------------------------
|
||||
trainer = Trainer(
|
||||
experiment=exp,
|
||||
checkpoint_callback=checkpoint,
|
||||
early_stop_callback=early_stop,
|
||||
)
|
||||
|
||||
# ------------------------
|
||||
# 5 START TRAINING
|
||||
# ------------------------
|
||||
trainer.fit(model)
|
||||
|
||||
|
||||
if __name__ == '__main__':
|
||||
|
||||
# dirs
|
||||
root_dir = os.path.dirname(os.path.realpath(__file__))
|
||||
demo_log_dir = os.path.join(root_dir, 'pt_lightning_demo_logs')
|
||||
checkpoint_dir = os.path.join(demo_log_dir, 'model_weights')
|
||||
test_tube_dir = os.path.join(demo_log_dir, 'test_tube_data')
|
||||
|
||||
# although we user hyperOptParser, we are using it only as argparse right now
|
||||
parent_parser = HyperOptArgumentParser(strategy='grid_search', add_help=False)
|
||||
|
||||
# gpu args
|
||||
parent_parser.add_argument('--test_tube_save_path', type=str,
|
||||
default=test_tube_dir, help='where to save logs')
|
||||
parent_parser.add_argument('--model_save_path', type=str,
|
||||
default=checkpoint_dir, help='where to save model')
|
||||
parent_parser.add_argument('--experiment_name', type=str,
|
||||
default='pt_lightning_exp_a', help='test tube exp name')
|
||||
|
||||
# allow model to overwrite or extend args
|
||||
parser = LightningTemplateModel.add_model_specific_args(parent_parser, root_dir)
|
||||
hyperparams = parser.parse_args()
|
||||
|
||||
# ---------------------
|
||||
# RUN TRAINING
|
||||
# ---------------------
|
||||
# run on HPC cluster
|
||||
print('RUNNING ON CPU')
|
||||
main(hyperparams)
|
||||
@@ -1,114 +0,0 @@
|
||||
"""
|
||||
16-bit single node, CPU example
|
||||
"""
|
||||
import os
|
||||
import numpy as np
|
||||
import torch
|
||||
|
||||
from test_tube import HyperOptArgumentParser, Experiment
|
||||
from pytorch_lightning import Trainer
|
||||
from pytorch_lightning.callbacks import EarlyStopping, ModelCheckpoint
|
||||
|
||||
from examples.new_project_templates.lightning_module_template import LightningTemplateModel
|
||||
|
||||
SEED = 2334
|
||||
torch.manual_seed(SEED)
|
||||
np.random.seed(SEED)
|
||||
|
||||
|
||||
def main(hparams):
|
||||
"""
|
||||
Main training routine specific for this project
|
||||
:param hparams:
|
||||
:return:
|
||||
"""
|
||||
# ------------------------
|
||||
# 1 INIT LIGHTNING MODEL
|
||||
# ------------------------
|
||||
print('loading model...')
|
||||
model = LightningTemplateModel(hparams)
|
||||
print('model built')
|
||||
|
||||
# ------------------------
|
||||
# 2 INIT TEST TUBE EXP
|
||||
# ------------------------
|
||||
|
||||
# init experiment
|
||||
exp = Experiment(
|
||||
name=hyperparams.experiment_name,
|
||||
save_dir=hyperparams.test_tube_save_path,
|
||||
autosave=False,
|
||||
description='test demo'
|
||||
)
|
||||
|
||||
exp.argparse(hparams)
|
||||
exp.save()
|
||||
|
||||
# ------------------------
|
||||
# 3 DEFINE CALLBACKS
|
||||
# ------------------------
|
||||
model_save_path = '{}/{}/{}'.format(hparams.model_save_path, exp.name, exp.version)
|
||||
early_stop = EarlyStopping(
|
||||
monitor='val_acc',
|
||||
patience=3,
|
||||
verbose=True,
|
||||
mode='max'
|
||||
)
|
||||
|
||||
checkpoint = ModelCheckpoint(
|
||||
filepath=model_save_path,
|
||||
save_best_only=True,
|
||||
verbose=True,
|
||||
monitor='val_loss',
|
||||
mode='min'
|
||||
)
|
||||
|
||||
# ------------------------
|
||||
# 4 INIT TRAINER
|
||||
# ------------------------
|
||||
trainer = Trainer(
|
||||
experiment=exp,
|
||||
checkpoint_callback=checkpoint,
|
||||
early_stop_callback=early_stop,
|
||||
gpus=hparams.gpus,
|
||||
use_amp=True
|
||||
)
|
||||
|
||||
# ------------------------
|
||||
# 5 START TRAINING
|
||||
# ------------------------
|
||||
trainer.fit(model)
|
||||
|
||||
|
||||
if __name__ == '__main__':
|
||||
|
||||
# dirs
|
||||
root_dir = os.path.dirname(os.path.realpath(__file__))
|
||||
demo_log_dir = os.path.join(root_dir, 'pt_lightning_demo_logs')
|
||||
checkpoint_dir = os.path.join(demo_log_dir, 'model_weights')
|
||||
test_tube_dir = os.path.join(demo_log_dir, 'test_tube_data')
|
||||
|
||||
# although we user hyperOptParser, we are using it only as argparse right now
|
||||
parent_parser = HyperOptArgumentParser(strategy='grid_search', add_help=False)
|
||||
|
||||
# gpu args
|
||||
parent_parser.add_argument('--gpus', type=str, default='-1',
|
||||
help='how many gpus to use in the node.'
|
||||
'value -1 uses all the gpus on the node')
|
||||
parent_parser.add_argument('--test_tube_save_path', type=str, default=test_tube_dir,
|
||||
help='where to save logs')
|
||||
parent_parser.add_argument('--model_save_path', type=str, default=checkpoint_dir,
|
||||
help='where to save model')
|
||||
parent_parser.add_argument('--experiment_name', type=str, default='pt_lightning_exp_a',
|
||||
help='test tube exp name')
|
||||
|
||||
# allow model to overwrite or extend args
|
||||
parser = LightningTemplateModel.add_model_specific_args(parent_parser, root_dir)
|
||||
hyperparams = parser.parse_args()
|
||||
|
||||
# ---------------------
|
||||
# RUN TRAINING
|
||||
# ---------------------
|
||||
# run on HPC cluster
|
||||
print(f'RUNNING INTERACTIVE MODE ON GPUS. gpu ids: {hyperparams.gpus}')
|
||||
main(hyperparams)
|
||||
@@ -1,114 +0,0 @@
|
||||
"""
|
||||
Runs a model on a single node across N-gpus.
|
||||
"""
|
||||
import os
|
||||
import numpy as np
|
||||
import torch
|
||||
|
||||
from test_tube import HyperOptArgumentParser, Experiment
|
||||
from pytorch_lightning import Trainer
|
||||
from pytorch_lightning.callbacks import EarlyStopping, ModelCheckpoint
|
||||
|
||||
from examples.new_project_templates.lightning_module_template import LightningTemplateModel
|
||||
|
||||
SEED = 2334
|
||||
torch.manual_seed(SEED)
|
||||
np.random.seed(SEED)
|
||||
|
||||
|
||||
def main(hparams):
|
||||
"""
|
||||
Main training routine specific for this project
|
||||
:param hparams:
|
||||
:return:
|
||||
"""
|
||||
# ------------------------
|
||||
# 1 INIT LIGHTNING MODEL
|
||||
# ------------------------
|
||||
print('loading model...')
|
||||
model = LightningTemplateModel(hparams)
|
||||
print('model built')
|
||||
|
||||
# ------------------------
|
||||
# 2 INIT TEST TUBE EXP
|
||||
# ------------------------
|
||||
|
||||
# init experiment
|
||||
exp = Experiment(
|
||||
name=hyperparams.experiment_name,
|
||||
save_dir=hyperparams.test_tube_save_path,
|
||||
autosave=False,
|
||||
description='test demo'
|
||||
)
|
||||
|
||||
exp.argparse(hparams)
|
||||
exp.save()
|
||||
|
||||
# ------------------------
|
||||
# 3 DEFINE CALLBACKS
|
||||
# ------------------------
|
||||
model_save_path = '{}/{}/{}'.format(hparams.model_save_path, exp.name, exp.version)
|
||||
early_stop = EarlyStopping(
|
||||
monitor='val_acc',
|
||||
patience=3,
|
||||
verbose=True,
|
||||
mode='max'
|
||||
)
|
||||
|
||||
checkpoint = ModelCheckpoint(
|
||||
filepath=model_save_path,
|
||||
save_best_only=True,
|
||||
verbose=True,
|
||||
monitor='val_loss',
|
||||
mode='min'
|
||||
)
|
||||
|
||||
# ------------------------
|
||||
# 4 INIT TRAINER
|
||||
# ------------------------
|
||||
trainer = Trainer(
|
||||
experiment=exp,
|
||||
checkpoint_callback=checkpoint,
|
||||
early_stop_callback=early_stop,
|
||||
gpus=hparams.gpus,
|
||||
distributed_backend='ddp'
|
||||
)
|
||||
|
||||
# ------------------------
|
||||
# 5 START TRAINING
|
||||
# ------------------------
|
||||
trainer.fit(model)
|
||||
|
||||
|
||||
if __name__ == '__main__':
|
||||
|
||||
# dirs
|
||||
root_dir = os.path.dirname(os.path.realpath(__file__))
|
||||
demo_log_dir = os.path.join(root_dir, 'pt_lightning_demo_logs')
|
||||
checkpoint_dir = os.path.join(demo_log_dir, 'model_weights')
|
||||
test_tube_dir = os.path.join(demo_log_dir, 'test_tube_data')
|
||||
|
||||
# although we user hyperOptParser, we are using it only as argparse right now
|
||||
parent_parser = HyperOptArgumentParser(strategy='grid_search', add_help=False)
|
||||
|
||||
# gpu args
|
||||
parent_parser.add_argument('--gpus', type=str, default='-1',
|
||||
help='how many gpus to use in the node.'
|
||||
' value -1 uses all the gpus on the node')
|
||||
parent_parser.add_argument('--test_tube_save_path', type=str, default=test_tube_dir,
|
||||
help='where to save logs')
|
||||
parent_parser.add_argument('--model_save_path', type=str, default=checkpoint_dir,
|
||||
help='where to save model')
|
||||
parent_parser.add_argument('--experiment_name', type=str, default='pt_lightning_exp_a',
|
||||
help='test tube exp name')
|
||||
|
||||
# allow model to overwrite or extend args
|
||||
parser = LightningTemplateModel.add_model_specific_args(parent_parser, root_dir)
|
||||
hyperparams = parser.parse_args()
|
||||
|
||||
# ---------------------
|
||||
# RUN TRAINING
|
||||
# ---------------------
|
||||
# run on HPC cluster
|
||||
print(f'RUNNING INTERACTIVE MODE ON GPUS. gpu ids: {hyperparams.gpus}')
|
||||
main(hyperparams)
|
||||
@@ -1,113 +0,0 @@
|
||||
"""
|
||||
Runs a model on a single node across N-gpus using dataParallel
|
||||
"""
|
||||
import os
|
||||
import numpy as np
|
||||
import torch
|
||||
|
||||
from test_tube import HyperOptArgumentParser, Experiment
|
||||
from pytorch_lightning import Trainer
|
||||
from pytorch_lightning.callbacks import EarlyStopping, ModelCheckpoint
|
||||
|
||||
from examples.new_project_templates.lightning_module_template import LightningTemplateModel
|
||||
|
||||
SEED = 2334
|
||||
torch.manual_seed(SEED)
|
||||
np.random.seed(SEED)
|
||||
|
||||
|
||||
def main(hparams):
|
||||
"""
|
||||
Main training routine specific for this project
|
||||
:param hparams:
|
||||
:return:
|
||||
"""
|
||||
# ------------------------
|
||||
# 1 INIT LIGHTNING MODEL
|
||||
# ------------------------
|
||||
print('loading model...')
|
||||
model = LightningTemplateModel(hparams)
|
||||
print('model built')
|
||||
|
||||
# ------------------------
|
||||
# 2 INIT TEST TUBE EXP
|
||||
# ------------------------
|
||||
|
||||
# init experiment
|
||||
exp = Experiment(
|
||||
name=hyperparams.experiment_name,
|
||||
save_dir=hyperparams.test_tube_save_path,
|
||||
autosave=False,
|
||||
description='test demo'
|
||||
)
|
||||
|
||||
exp.argparse(hparams)
|
||||
exp.save()
|
||||
|
||||
# ------------------------
|
||||
# 3 DEFINE CALLBACKS
|
||||
# ------------------------
|
||||
model_save_path = '{}/{}/{}'.format(hparams.model_save_path, exp.name, exp.version)
|
||||
early_stop = EarlyStopping(
|
||||
monitor='val_acc',
|
||||
patience=3,
|
||||
verbose=True,
|
||||
mode='max'
|
||||
)
|
||||
|
||||
checkpoint = ModelCheckpoint(
|
||||
filepath=model_save_path,
|
||||
save_best_only=True,
|
||||
verbose=True,
|
||||
monitor='val_loss',
|
||||
mode='min'
|
||||
)
|
||||
|
||||
# ------------------------
|
||||
# 4 INIT TRAINER
|
||||
# ------------------------
|
||||
trainer = Trainer(
|
||||
experiment=exp,
|
||||
checkpoint_callback=checkpoint,
|
||||
early_stop_callback=early_stop,
|
||||
gpus=hparams.gpus,
|
||||
)
|
||||
|
||||
# ------------------------
|
||||
# 5 START TRAINING
|
||||
# ------------------------
|
||||
trainer.fit(model)
|
||||
|
||||
|
||||
if __name__ == '__main__':
|
||||
|
||||
# dirs
|
||||
root_dir = os.path.dirname(os.path.realpath(__file__))
|
||||
demo_log_dir = os.path.join(root_dir, 'pt_lightning_demo_logs')
|
||||
checkpoint_dir = os.path.join(demo_log_dir, 'model_weights')
|
||||
test_tube_dir = os.path.join(demo_log_dir, 'test_tube_data')
|
||||
|
||||
# although we user hyperOptParser, we are using it only as argparse right now
|
||||
parent_parser = HyperOptArgumentParser(strategy='grid_search', add_help=False)
|
||||
|
||||
# gpu args
|
||||
parent_parser.add_argument('--gpus', type=str, default='-1',
|
||||
help='how many gpus to use in the node.'
|
||||
' value -1 uses all the gpus on the node')
|
||||
parent_parser.add_argument('--test_tube_save_path', type=str, default=test_tube_dir,
|
||||
help='where to save logs')
|
||||
parent_parser.add_argument('--model_save_path', type=str, default=checkpoint_dir,
|
||||
help='where to save model')
|
||||
parent_parser.add_argument('--experiment_name', type=str, default='pt_lightning_exp_a',
|
||||
help='test tube exp name')
|
||||
|
||||
# allow model to overwrite or extend args
|
||||
parser = LightningTemplateModel.add_model_specific_args(parent_parser, root_dir)
|
||||
hyperparams = parser.parse_args()
|
||||
|
||||
# ---------------------
|
||||
# RUN TRAINING
|
||||
# ---------------------
|
||||
# run on HPC cluster
|
||||
print(f'RUNNING INTERACTIVE MODE ON GPUS. gpu ids: {hyperparams.gpus}')
|
||||
main(hyperparams)
|
||||
@@ -1,74 +0,0 @@
|
||||
import os
|
||||
import sys
|
||||
|
||||
from test_tube import HyperOptArgumentParser, Experiment
|
||||
from pytorch_lightning import Trainer
|
||||
from pytorch_lightning.utilities.arg_parse import add_default_args
|
||||
from pytorch_lightning.callbacks.pt_callbacks import EarlyStopping, ModelCheckpoint
|
||||
|
||||
from examples.new_project_templates.lightning_module_template import LightningTemplateModel
|
||||
|
||||
|
||||
def main(hparams):
|
||||
"""
|
||||
Main training routine specific for this project
|
||||
:param hparams:
|
||||
:return:
|
||||
"""
|
||||
# init experiment
|
||||
exp = Experiment(
|
||||
name=hparams.tt_name,
|
||||
debug=hparams.debug,
|
||||
save_dir=hparams.tt_save_path,
|
||||
version=hparams.hpc_exp_number,
|
||||
autosave=False,
|
||||
description=hparams.tt_description
|
||||
)
|
||||
|
||||
exp.argparse(hparams)
|
||||
exp.save()
|
||||
|
||||
# build model
|
||||
model = LightningTemplateModel(hparams)
|
||||
|
||||
# callbacks
|
||||
early_stop = EarlyStopping(
|
||||
monitor='val_acc',
|
||||
patience=3,
|
||||
mode='min',
|
||||
verbose=True,
|
||||
)
|
||||
|
||||
model_save_path = '{}/{}/{}'.format(hparams.model_save_path, exp.name, exp.version)
|
||||
checkpoint = ModelCheckpoint(
|
||||
filepath=model_save_path,
|
||||
save_best_only=True,
|
||||
verbose=True,
|
||||
monitor='val_acc',
|
||||
mode='min'
|
||||
)
|
||||
|
||||
# configure trainer
|
||||
trainer = Trainer(
|
||||
experiment=exp,
|
||||
checkpoint_callback=checkpoint,
|
||||
early_stop_callback=early_stop,
|
||||
)
|
||||
|
||||
# train model
|
||||
trainer.fit(model)
|
||||
|
||||
|
||||
if __name__ == '__main__':
|
||||
|
||||
# use default args given by lightning
|
||||
root_dir = os.path.split(os.path.dirname(sys.modules['__main__'].__file__))[0]
|
||||
parent_parser = HyperOptArgumentParser(strategy='random_search', add_help=False)
|
||||
add_default_args(parent_parser, root_dir)
|
||||
|
||||
# allow model to overwrite or extend args
|
||||
parser = LightningTemplateModel.add_model_specific_args(parent_parser)
|
||||
hyperparams = parser.parse_args()
|
||||
|
||||
# train model
|
||||
main(hyperparams)
|
||||
@@ -125,7 +125,8 @@ class EarlyStopping(Callback):
|
||||
print('Early stopping conditioned on metric `%s` '
|
||||
'which is not available. Available metrics are: %s' %
|
||||
(self.monitor, ','.join(list(logs.keys()))), RuntimeWarning)
|
||||
exit(-1)
|
||||
stop_training = True
|
||||
return stop_training
|
||||
|
||||
if self.monitor_op(current - self.min_delta, self.best):
|
||||
self.best = current
|
||||
|
||||
@@ -0,0 +1,10 @@
|
||||
from .base import LightningLoggerBase, rank_zero_only
|
||||
|
||||
try:
|
||||
from .test_tube_logger import TestTubeLogger
|
||||
except ModuleNotFoundError:
|
||||
pass
|
||||
try:
|
||||
from .mlflow_logger import MLFlowLogger
|
||||
except ModuleNotFoundError:
|
||||
pass
|
||||
@@ -0,0 +1,71 @@
|
||||
from functools import wraps
|
||||
|
||||
|
||||
def rank_zero_only(fn):
|
||||
"""Decorate a logger method to run it only on the process with rank 0
|
||||
|
||||
:param fn: Function to decorate
|
||||
"""
|
||||
|
||||
@wraps(fn)
|
||||
def wrapped_fn(self, *args, **kwargs):
|
||||
if self.rank == 0:
|
||||
fn(self, *args, **kwargs)
|
||||
|
||||
return wrapped_fn
|
||||
|
||||
|
||||
class LightningLoggerBase(object):
|
||||
"""Base class for experiment loggers"""
|
||||
|
||||
def __init__(self):
|
||||
self._rank = 0
|
||||
|
||||
def log_metrics(self, metrics, step_num):
|
||||
"""Record metrics
|
||||
|
||||
:param metric: Dictionary with metric names as keys and measured
|
||||
quanties as values
|
||||
:param step_num: Step number at which the metrics should be recorded
|
||||
"""
|
||||
raise NotImplementedError()
|
||||
|
||||
def log_hyperparams(self, params):
|
||||
"""Record hyperparameters
|
||||
|
||||
:param params: argparse.Namespace containing the hyperparameters
|
||||
"""
|
||||
raise NotImplementedError()
|
||||
|
||||
def save(self):
|
||||
"""Save log data"""
|
||||
pass
|
||||
|
||||
def finalize(self, status):
|
||||
"""Do any processing that is necessary to finalize an experiment
|
||||
|
||||
:param status: Status that the experiment finished with (e.g. success, failed, aborted)
|
||||
"""
|
||||
pass
|
||||
|
||||
def close(self):
|
||||
"""Do any cleanup that is necessary to close an experiment"""
|
||||
pass
|
||||
|
||||
@property
|
||||
def rank(self):
|
||||
"""
|
||||
Process rank. In general, metrics should only be logged by the process
|
||||
with rank 0
|
||||
"""
|
||||
return self._rank
|
||||
|
||||
@rank.setter
|
||||
def rank(self, value):
|
||||
"""Set the process rank"""
|
||||
self._rank = value
|
||||
|
||||
@property
|
||||
def version(self):
|
||||
"""Return the experiment version"""
|
||||
return None
|
||||
@@ -0,0 +1,59 @@
|
||||
from time import time
|
||||
from logging import getLogger
|
||||
|
||||
import mlflow
|
||||
|
||||
from .base import LightningLoggerBase, rank_zero_only
|
||||
|
||||
logger = getLogger(__name__)
|
||||
|
||||
|
||||
class MLFlowLogger(LightningLoggerBase):
|
||||
def __init__(self, experiment_name, tracking_uri=None, tags=None):
|
||||
super().__init__()
|
||||
self.client = mlflow.tracking.MlflowClient(tracking_uri)
|
||||
self.experiment_name = experiment_name
|
||||
self._run_id = None
|
||||
self.tags = tags
|
||||
|
||||
@property
|
||||
def run_id(self):
|
||||
if self._run_id is not None:
|
||||
return self._run_id
|
||||
|
||||
experiment = self.client.get_experiment_by_name(self.experiment_name)
|
||||
if experiment is None:
|
||||
logger.warning(
|
||||
f"Experiment with name f{self.experiment_name} not found. Creating it."
|
||||
)
|
||||
self.client.create_experiment(self.experiment_name)
|
||||
experiment = self.client.get_experiment_by_name(self.experiment_name)
|
||||
|
||||
run = self.client.create_run(experiment.experiment_id, tags=self.tags)
|
||||
self._run_id = run.info.run_id
|
||||
return self._run_id
|
||||
|
||||
@rank_zero_only
|
||||
def log_hyperparams(self, params):
|
||||
for k, v in vars(params).items():
|
||||
self.client.log_param(self.run_id, k, v)
|
||||
|
||||
@rank_zero_only
|
||||
def log_metrics(self, metrics, step_num=None):
|
||||
timestamp_ms = int(time() * 1000)
|
||||
for k, v in metrics.items():
|
||||
if isinstance(v, str):
|
||||
logger.warning(
|
||||
f"Discarding metric with string value {k}={v}"
|
||||
)
|
||||
continue
|
||||
self.client.log_metric(self.run_id, k, v, timestamp_ms, step_num)
|
||||
|
||||
def save(self):
|
||||
pass
|
||||
|
||||
@rank_zero_only
|
||||
def finalize(self, status="FINISHED"):
|
||||
if status == 'success':
|
||||
status = 'FINISHED'
|
||||
self.client.set_terminated(self.run_id, status)
|
||||
@@ -0,0 +1,102 @@
|
||||
import os.path
|
||||
from copy import copy
|
||||
|
||||
from .base import LightningLoggerBase, rank_zero_only
|
||||
|
||||
from test_tube import Experiment
|
||||
|
||||
|
||||
class TestTubeLogger(LightningLoggerBase):
|
||||
__test__ = False
|
||||
|
||||
def __init__(
|
||||
self, save_dir, name="default", description=None, debug=False,
|
||||
version=None, create_git_tag=False
|
||||
):
|
||||
super().__init__()
|
||||
self.save_dir = save_dir
|
||||
self.name = name
|
||||
self.description = description
|
||||
self.debug = debug
|
||||
self._version = version
|
||||
self.create_git_tag = create_git_tag
|
||||
self._experiment = None
|
||||
|
||||
@property
|
||||
def experiment(self):
|
||||
if self._experiment is not None:
|
||||
return self._experiment
|
||||
|
||||
self._experiment = Experiment(
|
||||
save_dir=self.save_dir,
|
||||
name=self.name,
|
||||
debug=self.debug,
|
||||
version=self.version,
|
||||
description=self.description,
|
||||
create_git_tag=self.create_git_tag,
|
||||
rank=self.rank,
|
||||
)
|
||||
return self._experiment
|
||||
|
||||
@rank_zero_only
|
||||
def log_hyperparams(self, params):
|
||||
# TODO: HACK figure out where this is being set to true
|
||||
self.experiment.debug = self.debug
|
||||
self.experiment.argparse(params)
|
||||
|
||||
@rank_zero_only
|
||||
def log_metrics(self, metrics, step_num=None):
|
||||
# TODO: HACK figure out where this is being set to true
|
||||
self.experiment.debug = self.debug
|
||||
self.experiment.log(metrics, global_step=step_num)
|
||||
|
||||
@rank_zero_only
|
||||
def save(self):
|
||||
# TODO: HACK figure out where this is being set to true
|
||||
self.experiment.debug = self.debug
|
||||
self.experiment.save()
|
||||
|
||||
@rank_zero_only
|
||||
def finalize(self, status):
|
||||
# TODO: HACK figure out where this is being set to true
|
||||
self.experiment.debug = self.debug
|
||||
self.save()
|
||||
self.close()
|
||||
|
||||
@rank_zero_only
|
||||
def close(self):
|
||||
# TODO: HACK figure out where this is being set to true
|
||||
self.experiment.debug = self.debug
|
||||
exp = self.experiment
|
||||
exp.close()
|
||||
|
||||
@property
|
||||
def rank(self):
|
||||
return self._rank
|
||||
|
||||
@rank.setter
|
||||
def rank(self, value):
|
||||
self._rank = value
|
||||
if self._experiment is not None:
|
||||
self.experiment.rank = value
|
||||
|
||||
@property
|
||||
def version(self):
|
||||
if self._experiment is None:
|
||||
return self._version
|
||||
else:
|
||||
return self.experiment.version
|
||||
|
||||
# Test tube experiments are not pickleable, so we need to override a few
|
||||
# methods to get DDP working. See
|
||||
# https://docs.python.org/3/library/pickle.html#handling-stateful-objects
|
||||
# for more info.
|
||||
def __getstate__(self):
|
||||
state = self.__dict__.copy()
|
||||
state["_experiment"] = self.experiment.get_meta_copy()
|
||||
return state
|
||||
|
||||
def __setstate__(self, state):
|
||||
self._experiment = state["_experiment"].get_non_ddp_exp()
|
||||
del state["_experiment"]
|
||||
self.__dict__.update(state)
|
||||
@@ -87,7 +87,6 @@ class LightningDistributedDataParallel(DistributedDataParallel):
|
||||
# --------------
|
||||
# normal
|
||||
# output = self.module(*inputs[0], **kwargs[0])
|
||||
|
||||
# lightning
|
||||
if self.module.training:
|
||||
output = self.module.training_step(*inputs[0], **kwargs[0])
|
||||
@@ -99,6 +98,7 @@ class LightningDistributedDataParallel(DistributedDataParallel):
|
||||
outputs = self.parallel_apply(self._module_copies[:len(inputs)], inputs, kwargs)
|
||||
output = self.gather(outputs, self.output_device)
|
||||
else:
|
||||
# normal
|
||||
output = self.module(*inputs, **kwargs)
|
||||
|
||||
if torch.is_grad_enabled():
|
||||
@@ -171,6 +171,14 @@ def parallel_apply(modules, inputs, kwargs_tup=None, devices=None): # pragma: n
|
||||
with lock:
|
||||
results[i] = e
|
||||
|
||||
# TODO: fix hack (maybe not a hack)
|
||||
# make sure each module knows what training state it's in...
|
||||
# fixes weird bug where copies are out of sync
|
||||
root_m = modules[0]
|
||||
for m in modules[1:]:
|
||||
m.training = root_m.training
|
||||
m.testing = root_m.testing
|
||||
|
||||
if len(modules) > 1:
|
||||
threads = [threading.Thread(target=_worker,
|
||||
args=(i, module, input, kwargs, device))
|
||||
|
||||
@@ -10,13 +10,18 @@ def data_loader(fn):
|
||||
|
||||
attr_name = '_lazy_' + fn.__name__
|
||||
|
||||
@property
|
||||
def _data_loader(self):
|
||||
def _get_data_loader(self):
|
||||
try:
|
||||
value = getattr(self, attr_name)
|
||||
except AttributeError:
|
||||
try:
|
||||
value = fn(self) # Lazy evaluation, done only once.
|
||||
if (
|
||||
value is not None and
|
||||
not isinstance(value, list) and
|
||||
fn.__name__ in['test_dataloader', 'val_dataloader']
|
||||
):
|
||||
value = [value]
|
||||
except AttributeError as e:
|
||||
# Guard against AttributeError suppression. (Issue #142)
|
||||
traceback.print_exc()
|
||||
@@ -25,4 +30,4 @@ def data_loader(fn):
|
||||
setattr(self, attr_name, value) # Memoize evaluation.
|
||||
return value
|
||||
|
||||
return _data_loader
|
||||
return _get_data_loader
|
||||
|
||||
@@ -10,7 +10,7 @@ class ModelHooks(torch.nn.Module):
|
||||
"""
|
||||
pass
|
||||
|
||||
def on_batch_start(self, data_batch):
|
||||
def on_batch_start(self, batch):
|
||||
pass
|
||||
|
||||
def on_batch_end(self):
|
||||
@@ -28,9 +28,6 @@ class ModelHooks(torch.nn.Module):
|
||||
def on_post_performance_check(self):
|
||||
pass
|
||||
|
||||
def on_tng_metrics(self, metrics):
|
||||
pass
|
||||
|
||||
def on_before_zero_grad(self, optimizer):
|
||||
"""
|
||||
Called after optimizer.step() and before optimizer.zero_grad()
|
||||
|
||||
@@ -12,11 +12,12 @@ import pandas as pd
|
||||
|
||||
class ModelSummary(object):
|
||||
|
||||
def __init__(self, model):
|
||||
def __init__(self, model, mode='full'):
|
||||
'''
|
||||
Generates summaries of model layers and dimensions.
|
||||
'''
|
||||
self.model = model
|
||||
self.mode = mode
|
||||
self.in_sizes = []
|
||||
self.out_sizes = []
|
||||
|
||||
@@ -28,9 +29,20 @@ class ModelSummary(object):
|
||||
def __repr__(self):
|
||||
return self.summary.__str__()
|
||||
|
||||
def named_modules(self):
|
||||
if self.mode == 'full':
|
||||
mods = self.model.named_modules()
|
||||
mods = list(mods)[1:] # do not include root module (LightningModule)
|
||||
elif self.mode == 'top':
|
||||
# the children are the top-level modules
|
||||
mods = self.model.named_children()
|
||||
else:
|
||||
mods = []
|
||||
return list(mods)
|
||||
|
||||
def get_variable_sizes(self):
|
||||
'''Run sample input through each layer to get output sizes'''
|
||||
mods = list(self.model.modules())
|
||||
mods = self.named_modules()
|
||||
in_sizes = []
|
||||
out_sizes = []
|
||||
input_ = self.model.example_input_array
|
||||
@@ -43,8 +55,7 @@ class ModelSummary(object):
|
||||
|
||||
with torch.no_grad():
|
||||
|
||||
for i in range(1, len(mods)):
|
||||
m = mods[i]
|
||||
for _, m in mods:
|
||||
if type(input_) is list or type(input_) is tuple: # pragma: no cover
|
||||
out = m(*input_)
|
||||
else:
|
||||
@@ -72,16 +83,17 @@ class ModelSummary(object):
|
||||
|
||||
self.in_sizes = in_sizes
|
||||
self.out_sizes = out_sizes
|
||||
assert len(in_sizes) == len(out_sizes)
|
||||
return
|
||||
|
||||
def get_layer_names(self):
|
||||
'''Collect Layer Names'''
|
||||
mods = list(self.model.named_modules())
|
||||
mods = self.named_modules()
|
||||
names = []
|
||||
layers = []
|
||||
for m in mods[1:]:
|
||||
names += [m[0]]
|
||||
layers += [str(m[1].__class__)]
|
||||
for name, m in mods:
|
||||
names += [name]
|
||||
layers += [str(m.__class__)]
|
||||
|
||||
layer_types = [x.split('.')[-1][:-2] for x in layers]
|
||||
|
||||
@@ -91,11 +103,9 @@ class ModelSummary(object):
|
||||
|
||||
def get_parameter_sizes(self):
|
||||
'''Get sizes of all parameters in `model`'''
|
||||
mods = list(self.model.modules())
|
||||
mods = self.named_modules()
|
||||
sizes = []
|
||||
|
||||
for i in range(1, len(mods)):
|
||||
m = mods[i]
|
||||
for _, m in mods:
|
||||
p = list(m.parameters())
|
||||
modsz = []
|
||||
for j in range(len(p)):
|
||||
@@ -133,6 +143,7 @@ class ModelSummary(object):
|
||||
df['Name'] = self.layer_names
|
||||
df['Type'] = self.layer_types
|
||||
df['Params'] = self.param_nums
|
||||
df['Params'] = df['Params'].map(get_human_readable_count)
|
||||
|
||||
if self.model.example_input_array is not None:
|
||||
|
||||
@@ -178,6 +189,33 @@ def count_mem_items(): # pragma: no cover
|
||||
return nb_params, nb_tensors
|
||||
|
||||
|
||||
def get_memory_profile(mode):
|
||||
"""
|
||||
'all' means return memory for all gpus
|
||||
'min_max' means return memory for max and min
|
||||
:param mode:
|
||||
:return:
|
||||
"""
|
||||
memory_map = get_gpu_memory_map()
|
||||
|
||||
if mode == 'min_max':
|
||||
min_mem = 1000000
|
||||
min_k = None
|
||||
max_mem = 0
|
||||
max_k = None
|
||||
for k, v in memory_map:
|
||||
if v > max_mem:
|
||||
max_mem = v
|
||||
max_k = k
|
||||
if v < min_mem:
|
||||
min_mem = v
|
||||
min_k = k
|
||||
|
||||
memory_map = {min_k: min_mem, max_k: max_mem}
|
||||
|
||||
return memory_map
|
||||
|
||||
|
||||
def get_gpu_memory_map():
|
||||
"""Get the current gpu usage.
|
||||
|
||||
@@ -196,6 +234,31 @@ def get_gpu_memory_map():
|
||||
gpu_memory = [int(x) for x in result.strip().split('\n')]
|
||||
gpu_memory_map = {}
|
||||
for k, v in zip(range(len(gpu_memory)), gpu_memory):
|
||||
k = 'gpu_%i' % k
|
||||
k = f'gpu_{k}'
|
||||
gpu_memory_map[k] = v
|
||||
return gpu_memory_map
|
||||
|
||||
|
||||
def get_human_readable_count(number):
|
||||
"""
|
||||
Abbreviates an integer number with K, M, B, T for thousands, millions,
|
||||
billions and trillions, respectively.
|
||||
Examples:
|
||||
123 -> 123
|
||||
1234 -> 1 K (one thousand)
|
||||
2e6 -> 2 M (two million)
|
||||
3e9 -> 3 B (three billion)
|
||||
4e12 -> 4 T (four trillion)
|
||||
5e15 -> 5,000 T
|
||||
:param number: a positive integer number
|
||||
:returns a string formatted according to the pattern described above.
|
||||
"""
|
||||
assert number >= 0
|
||||
labels = [' ', 'K', 'M', 'B', 'T']
|
||||
num_digits = int(np.floor(np.log10(number)) + 1 if number > 0 else 1)
|
||||
num_groups = int(np.ceil(num_digits / 3))
|
||||
num_groups = min(num_groups, len(labels)) # don't abbreviate beyond trillions
|
||||
shift = -3 * (num_groups - 1)
|
||||
number = number * (10 ** shift)
|
||||
index = num_groups - 1
|
||||
return f'{int(number):,d} {labels[index]}'
|
||||
|
||||
@@ -19,13 +19,14 @@ class LightningModule(GradInformation, ModelIO, ModelHooks):
|
||||
self.global_step = 0
|
||||
self.loaded_optimizer_states_dict = {}
|
||||
self.trainer = None
|
||||
self.experiment = None
|
||||
self.logger = None
|
||||
self.example_input_array = None
|
||||
|
||||
# track if gpu was requested for checkpointing
|
||||
self.on_gpu = False
|
||||
self.use_dp = False
|
||||
self.use_ddp = False
|
||||
self.use_ddp2 = False
|
||||
self.use_amp = False
|
||||
|
||||
def forward(self, *args, **kwargs):
|
||||
@@ -91,22 +92,26 @@ class LightningModule(GradInformation, ModelIO, ModelHooks):
|
||||
"""
|
||||
raise NotImplementedError
|
||||
|
||||
def optimizer_step(self, epoch_nb, batch_nb, optimizer, optimizer_i):
|
||||
def optimizer_step(self, epoch_nb, batch_nb, optimizer, optimizer_i, second_order_closure=None):
|
||||
"""
|
||||
Do something instead of the standard optimizer behavior
|
||||
:param epoch_nb:
|
||||
:param batch_nb:
|
||||
:param optimizer:
|
||||
:param optimizer_i:
|
||||
:param second_order_closure: closure for second order methods
|
||||
:return:
|
||||
"""
|
||||
optimizer.step()
|
||||
if isinstance(optimizer, torch.optim.LBFGS):
|
||||
optimizer.step(second_order_closure)
|
||||
else:
|
||||
optimizer.step()
|
||||
|
||||
# clear gradients
|
||||
optimizer.zero_grad()
|
||||
|
||||
@data_loader
|
||||
def tng_dataloader(self):
|
||||
def train_dataloader(self):
|
||||
"""
|
||||
Implement a PyTorch DataLoader
|
||||
:return:
|
||||
@@ -130,17 +135,16 @@ class LightningModule(GradInformation, ModelIO, ModelHooks):
|
||||
return None
|
||||
|
||||
@classmethod
|
||||
def load_from_metrics(cls, weights_path, tags_csv, on_gpu):
|
||||
def load_from_metrics(cls, weights_path, tags_csv):
|
||||
"""
|
||||
Primary way of loading model from csv weights path
|
||||
:param weights_path:
|
||||
:param tags_csv:
|
||||
:param on_gpu:
|
||||
:param map_location: dic for mapping storage {'cuda:1':'cuda:0'}
|
||||
:return:
|
||||
"""
|
||||
hparams = load_hparams_from_tags_csv(tags_csv)
|
||||
hparams.__setattr__('on_gpu', on_gpu)
|
||||
hparams.__setattr__('on_gpu', False)
|
||||
|
||||
# load on CPU only to avoid OOM issues
|
||||
# then its up to user to put back on GPUs
|
||||
@@ -155,8 +159,8 @@ class LightningModule(GradInformation, ModelIO, ModelHooks):
|
||||
|
||||
return model
|
||||
|
||||
def summarize(self):
|
||||
model_summary = ModelSummary(self)
|
||||
def summarize(self, mode):
|
||||
model_summary = ModelSummary(self, mode=mode)
|
||||
print(model_summary)
|
||||
|
||||
def freeze(self):
|
||||
|
||||
@@ -23,5 +23,5 @@ class LightningTestModel(LightningValidationMixin, LightningTestMixin, Lightning
|
||||
Most common test case. Validation and test dataloaders
|
||||
"""
|
||||
|
||||
def on_tng_metrics(self, logs):
|
||||
def on_training_metrics(self, logs):
|
||||
logs['some_tensor_to_test'] = torch.rand(1)
|
||||
|
||||
@@ -81,14 +81,14 @@ class LightningTestModelBase(LightningModule):
|
||||
nll = F.nll_loss(logits, labels)
|
||||
return nll
|
||||
|
||||
def training_step(self, data_batch, batch_i):
|
||||
def training_step(self, batch, batch_idx):
|
||||
"""
|
||||
Lightning calls this inside the training loop
|
||||
:param data_batch:
|
||||
:param batch:
|
||||
:return:
|
||||
"""
|
||||
# forward pass
|
||||
x, y = data_batch
|
||||
x, y = batch
|
||||
x = x.view(x.size(0), -1)
|
||||
|
||||
y_hat = self.forward(x)
|
||||
@@ -104,8 +104,10 @@ class LightningTestModelBase(LightningModule):
|
||||
if self.trainer.batch_nb % 1 == 0:
|
||||
output = OrderedDict({
|
||||
'loss': loss_val,
|
||||
'prog': {'some_val': loss_val * loss_val}
|
||||
'progress_bar': {'some_val': loss_val * loss_val},
|
||||
'log': {'train_some_val': loss_val * loss_val},
|
||||
})
|
||||
|
||||
return output
|
||||
if self.trainer.batch_nb % 2 == 0:
|
||||
return loss_val
|
||||
@@ -115,11 +117,14 @@ class LightningTestModelBase(LightningModule):
|
||||
# ---------------------
|
||||
def configure_optimizers(self):
|
||||
"""
|
||||
return whatever optimizers we want here
|
||||
return whatever optimizers we want here.
|
||||
:return: list of optimizers
|
||||
"""
|
||||
# try no scheduler for this model (testing purposes)
|
||||
optimizer = optim.Adam(self.parameters(), lr=self.hparams.learning_rate)
|
||||
if self.hparams.optimizer_name == 'lbfgs':
|
||||
optimizer = optim.LBFGS(self.parameters(), lr=self.hparams.learning_rate)
|
||||
else:
|
||||
optimizer = optim.Adam(self.parameters(), lr=self.hparams.learning_rate)
|
||||
|
||||
# test returning only 1 list instead of 2
|
||||
return optimizer
|
||||
@@ -153,7 +158,7 @@ class LightningTestModelBase(LightningModule):
|
||||
return loader
|
||||
|
||||
@data_loader
|
||||
def tng_dataloader(self):
|
||||
def train_dataloader(self):
|
||||
return self._dataloader(train=True)
|
||||
|
||||
@staticmethod
|
||||
@@ -167,7 +172,7 @@ class LightningTestModelBase(LightningModule):
|
||||
parser = HyperOptArgumentParser(strategy=parent_parser.strategy, parents=[parent_parser])
|
||||
|
||||
# param overwrites
|
||||
# parser.set_defaults(gradient_clip=5.0)
|
||||
# parser.set_defaults(gradient_clip_val=5.0)
|
||||
|
||||
# network params
|
||||
parser.opt_list('--drop_prob', default=0.2, options=[0.2, 0.5], type=float, tunable=False)
|
||||
|
||||
@@ -25,13 +25,13 @@ class LightningValidationStepMixin:
|
||||
def val_dataloader(self):
|
||||
return self._dataloader(train=False)
|
||||
|
||||
def validation_step(self, data_batch, batch_i):
|
||||
def validation_step(self, batch, batch_idx):
|
||||
"""
|
||||
Lightning calls this inside the validation loop
|
||||
:param data_batch:
|
||||
:param batch:
|
||||
:return:
|
||||
"""
|
||||
x, y = data_batch
|
||||
x, y = batch
|
||||
x = x.view(x.size(0), -1)
|
||||
y_hat = self.forward(x)
|
||||
|
||||
@@ -51,16 +51,16 @@ class LightningValidationStepMixin:
|
||||
val_acc = val_acc.unsqueeze(0)
|
||||
|
||||
# alternate possible outputs to test
|
||||
if batch_i % 1 == 0:
|
||||
if batch_idx % 1 == 0:
|
||||
output = OrderedDict({
|
||||
'val_loss': loss_val,
|
||||
'val_acc': val_acc,
|
||||
})
|
||||
return output
|
||||
if batch_i % 2 == 0:
|
||||
if batch_idx % 2 == 0:
|
||||
return val_acc
|
||||
|
||||
if batch_i % 3 == 0:
|
||||
if batch_idx % 3 == 0:
|
||||
output = OrderedDict({
|
||||
'val_loss': loss_val,
|
||||
'val_acc': val_acc,
|
||||
@@ -104,8 +104,9 @@ class LightningValidationMixin(LightningValidationStepMixin):
|
||||
val_loss_mean /= len(outputs)
|
||||
val_acc_mean /= len(outputs)
|
||||
|
||||
tqdm_dic = {'val_loss': val_loss_mean.item(), 'val_acc': val_acc_mean.item()}
|
||||
return tqdm_dic
|
||||
tqdm_dict = {'val_loss': val_loss_mean.item(), 'val_acc': val_acc_mean.item()}
|
||||
results = {'progress_bar': tqdm_dict, 'log': tqdm_dict}
|
||||
return results
|
||||
|
||||
|
||||
class LightningValidationStepMultipleDataloadersMixin:
|
||||
@@ -118,13 +119,13 @@ class LightningValidationStepMultipleDataloadersMixin:
|
||||
def val_dataloader(self):
|
||||
return [self._dataloader(train=False), self._dataloader(train=False)]
|
||||
|
||||
def validation_step(self, data_batch, batch_i, dataloader_i):
|
||||
def validation_step(self, batch, batch_idx, dataloader_idx):
|
||||
"""
|
||||
Lightning calls this inside the validation loop
|
||||
:param data_batch:
|
||||
:param batch:
|
||||
:return:
|
||||
"""
|
||||
x, y = data_batch
|
||||
x, y = batch
|
||||
x = x.view(x.size(0), -1)
|
||||
y_hat = self.forward(x)
|
||||
|
||||
@@ -144,26 +145,26 @@ class LightningValidationStepMultipleDataloadersMixin:
|
||||
val_acc = val_acc.unsqueeze(0)
|
||||
|
||||
# alternate possible outputs to test
|
||||
if batch_i % 1 == 0:
|
||||
if batch_idx % 1 == 0:
|
||||
output = OrderedDict({
|
||||
'val_loss': loss_val,
|
||||
'val_acc': val_acc,
|
||||
})
|
||||
return output
|
||||
if batch_i % 2 == 0:
|
||||
if batch_idx % 2 == 0:
|
||||
return val_acc
|
||||
|
||||
if batch_i % 3 == 0:
|
||||
if batch_idx % 3 == 0:
|
||||
output = OrderedDict({
|
||||
'val_loss': loss_val,
|
||||
'val_acc': val_acc,
|
||||
'test_dic': {'val_loss_a': loss_val}
|
||||
})
|
||||
return output
|
||||
if batch_i % 5 == 0:
|
||||
if batch_idx % 5 == 0:
|
||||
output = OrderedDict({
|
||||
f'val_loss_{dataloader_i}': loss_val,
|
||||
f'val_acc_{dataloader_i}': val_acc,
|
||||
f'val_loss_{dataloader_idx}': loss_val,
|
||||
f'val_acc_{dataloader_idx}': val_acc,
|
||||
})
|
||||
return output
|
||||
|
||||
@@ -206,8 +207,9 @@ class LightningValidationMultipleDataloadersMixin(LightningValidationStepMultipl
|
||||
val_loss_mean /= i
|
||||
val_acc_mean /= i
|
||||
|
||||
tqdm_dic = {'val_loss': val_loss_mean.item(), 'val_acc': val_acc_mean.item()}
|
||||
return tqdm_dic
|
||||
tqdm_dict = {'val_loss': val_loss_mean.item(), 'val_acc': val_acc_mean.item()}
|
||||
result = {'progress_bar': tqdm_dict}
|
||||
return result
|
||||
|
||||
|
||||
class LightningTestStepMixin:
|
||||
@@ -216,13 +218,13 @@ class LightningTestStepMixin:
|
||||
def test_dataloader(self):
|
||||
return self._dataloader(train=False)
|
||||
|
||||
def test_step(self, data_batch, batch_i):
|
||||
def test_step(self, batch, batch_idx):
|
||||
"""
|
||||
Lightning calls this inside the validation loop
|
||||
:param data_batch:
|
||||
:param batch:
|
||||
:return:
|
||||
"""
|
||||
x, y = data_batch
|
||||
x, y = batch
|
||||
x = x.view(x.size(0), -1)
|
||||
y_hat = self.forward(x)
|
||||
|
||||
@@ -242,16 +244,16 @@ class LightningTestStepMixin:
|
||||
test_acc = test_acc.unsqueeze(0)
|
||||
|
||||
# alternate possible outputs to test
|
||||
if batch_i % 1 == 0:
|
||||
if batch_idx % 1 == 0:
|
||||
output = OrderedDict({
|
||||
'test_loss': loss_test,
|
||||
'test_acc': test_acc,
|
||||
})
|
||||
return output
|
||||
if batch_i % 2 == 0:
|
||||
if batch_idx % 2 == 0:
|
||||
return test_acc
|
||||
|
||||
if batch_i % 3 == 0:
|
||||
if batch_idx % 3 == 0:
|
||||
output = OrderedDict({
|
||||
'test_loss': loss_test,
|
||||
'test_acc': test_acc,
|
||||
@@ -290,8 +292,9 @@ class LightningTestMixin(LightningTestStepMixin):
|
||||
test_loss_mean /= len(outputs)
|
||||
test_acc_mean /= len(outputs)
|
||||
|
||||
tqdm_dic = {'test_loss': test_loss_mean.item(), 'test_acc': test_acc_mean.item()}
|
||||
return tqdm_dic
|
||||
tqdm_dict = {'test_loss': test_loss_mean.item(), 'test_acc': test_acc_mean.item()}
|
||||
result = {'progress_bar': tqdm_dict}
|
||||
return result
|
||||
|
||||
|
||||
class LightningTestStepMultipleDataloadersMixin:
|
||||
@@ -300,13 +303,13 @@ class LightningTestStepMultipleDataloadersMixin:
|
||||
def test_dataloader(self):
|
||||
return [self._dataloader(train=False), self._dataloader(train=False)]
|
||||
|
||||
def test_step(self, data_batch, batch_i, dataloader_i):
|
||||
def test_step(self, batch, batch_idx, dataloader_idx):
|
||||
"""
|
||||
Lightning calls this inside the validation loop
|
||||
:param data_batch:
|
||||
:param batch:
|
||||
:return:
|
||||
"""
|
||||
x, y = data_batch
|
||||
x, y = batch
|
||||
x = x.view(x.size(0), -1)
|
||||
y_hat = self.forward(x)
|
||||
|
||||
@@ -326,26 +329,26 @@ class LightningTestStepMultipleDataloadersMixin:
|
||||
test_acc = test_acc.unsqueeze(0)
|
||||
|
||||
# alternate possible outputs to test
|
||||
if batch_i % 1 == 0:
|
||||
if batch_idx % 1 == 0:
|
||||
output = OrderedDict({
|
||||
'test_loss': loss_test,
|
||||
'test_acc': test_acc,
|
||||
})
|
||||
return output
|
||||
if batch_i % 2 == 0:
|
||||
if batch_idx % 2 == 0:
|
||||
return test_acc
|
||||
|
||||
if batch_i % 3 == 0:
|
||||
if batch_idx % 3 == 0:
|
||||
output = OrderedDict({
|
||||
'test_loss': loss_test,
|
||||
'test_acc': test_acc,
|
||||
'test_dic': {'test_loss_a': loss_test}
|
||||
})
|
||||
return output
|
||||
if batch_i % 5 == 0:
|
||||
if batch_idx % 5 == 0:
|
||||
output = OrderedDict({
|
||||
f'test_loss_{dataloader_i}': loss_test,
|
||||
f'test_acc_{dataloader_i}': test_acc,
|
||||
f'test_loss_{dataloader_idx}': loss_test,
|
||||
f'test_acc_{dataloader_idx}': test_acc,
|
||||
})
|
||||
return output
|
||||
|
||||
@@ -383,5 +386,6 @@ class LightningTestMultipleDataloadersMixin(LightningTestStepMultipleDataloaders
|
||||
test_loss_mean /= i
|
||||
test_acc_mean /= i
|
||||
|
||||
tqdm_dic = {'test_loss': test_loss_mean.item(), 'test_acc': test_acc_mean.item()}
|
||||
return tqdm_dic
|
||||
tqdm_dict = {'test_loss': test_loss_mean.item(), 'test_acc': test_acc_mean.item()}
|
||||
result = {'progress_bar': tqdm_dict}
|
||||
return result
|
||||
|
||||
@@ -0,0 +1,14 @@
|
||||
import warnings
|
||||
|
||||
|
||||
def ignore_scalar_return_in_dp():
|
||||
# Users get confused by this warning so we silence it
|
||||
m_1 = """
|
||||
Was asked to gather along dimension 0, but all
|
||||
input tensors were scalars; will instead unsqueeze
|
||||
and return a vector.
|
||||
"""
|
||||
warnings.filterwarnings('ignore', message=m_1)
|
||||
|
||||
|
||||
ignore_scalar_return_in_dp()
|
||||
File diff suppressed because it is too large
Load Diff
@@ -5,7 +5,7 @@ import pdb
|
||||
from subprocess import call
|
||||
|
||||
import torch
|
||||
|
||||
import torch.distributed as dist
|
||||
from pytorch_lightning.pt_overrides.override_data_parallel import (
|
||||
LightningDistributedDataParallel, LightningDataParallel)
|
||||
|
||||
@@ -35,6 +35,11 @@ class TrainerIO(object):
|
||||
# if script called from hpc resubmit, load weights
|
||||
self.restore_hpc_weights_if_needed(model)
|
||||
|
||||
# wait for all models to restore weights
|
||||
if self.use_ddp or self.use_ddp2:
|
||||
# wait for all processes to catch up
|
||||
dist.barrier()
|
||||
|
||||
def restore_state_if_checkpoint_exists(self, model):
|
||||
# do nothing if there's not dir or callback
|
||||
no_ckpt_callback = self.checkpoint_callback is None
|
||||
@@ -88,7 +93,7 @@ class TrainerIO(object):
|
||||
if self.proc_rank == 0:
|
||||
# save weights
|
||||
print('handling SIGUSR1')
|
||||
self.hpc_save(self.weights_save_path, self.experiment)
|
||||
self.hpc_save(self.weights_save_path, self.logger)
|
||||
|
||||
# find job id
|
||||
job_id = os.environ['SLURM_JOB_ID']
|
||||
@@ -105,7 +110,7 @@ class TrainerIO(object):
|
||||
print('requeue failed...')
|
||||
|
||||
# close experiment to avoid issues
|
||||
self.experiment.close()
|
||||
self.logger.close()
|
||||
|
||||
def term_handler(self, signum, frame):
|
||||
# save
|
||||
@@ -233,12 +238,12 @@ class TrainerIO(object):
|
||||
# ----------------------------------
|
||||
# PRIVATE OPS
|
||||
# ----------------------------------
|
||||
def hpc_save(self, folderpath, experiment):
|
||||
def hpc_save(self, folderpath, logger):
|
||||
# make sure the checkpoint folder exists
|
||||
os.makedirs(folderpath, exist_ok=True)
|
||||
|
||||
# save exp to make sure we get all the metrics
|
||||
experiment.save()
|
||||
# save logger to make sure we get all the metrics
|
||||
logger.save()
|
||||
|
||||
ckpt_number = self.max_ckpt_in_folder(folderpath) + 1
|
||||
|
||||
|
||||
@@ -8,7 +8,7 @@ import os
|
||||
|
||||
def add_default_args(parser, root_dir, rand_seed=None, possible_model_names=None):
|
||||
|
||||
# tng, test, val check intervals
|
||||
# training, test, val check intervals
|
||||
parser.add_argument('--eval_test_set', dest='eval_test_set', action='store_true',
|
||||
help='true = run test set also')
|
||||
parser.add_argument('--check_val_every_n_epoch', default=1, type=int,
|
||||
@@ -19,7 +19,7 @@ def add_default_args(parser, root_dir, rand_seed=None, possible_model_names=None
|
||||
parser.add_argument('--max_nb_epochs', default=200, type=int, help='cap epochs')
|
||||
parser.add_argument('--min_nb_epochs', default=2, type=int, help='min epochs')
|
||||
parser.add_argument('--train_percent_check', default=1.0, type=float,
|
||||
help='how much of tng set to check')
|
||||
help='how much of training set to check')
|
||||
parser.add_argument('--val_percent_check', default=1.0, type=float,
|
||||
help='how much of val set to check')
|
||||
parser.add_argument('--test_percent_check', default=1.0, type=float,
|
||||
@@ -29,7 +29,7 @@ def add_default_args(parser, root_dir, rand_seed=None, possible_model_names=None
|
||||
help='how much within 1 epoch to check val')
|
||||
parser.add_argument('--log_save_interval', default=100, type=int,
|
||||
help='how many batches between log saves')
|
||||
parser.add_argument('--add_log_row_interval', default=100, type=int,
|
||||
parser.add_argument('--row_log_interval', default=100, type=int,
|
||||
help='add log every k batches')
|
||||
|
||||
# early stopping
|
||||
@@ -40,7 +40,7 @@ def add_default_args(parser, root_dir, rand_seed=None, possible_model_names=None
|
||||
help='number of epochs until stop')
|
||||
|
||||
# gradient handling
|
||||
parser.add_argument('--gradient_clip', default=-1, type=int)
|
||||
parser.add_argument('--gradient_clip_val', default=-1, type=int)
|
||||
parser.add_argument('--track_grad_norm', default=-1, type=int,
|
||||
help='if > 0, will track this grad norm')
|
||||
|
||||
@@ -78,9 +78,9 @@ def add_default_args(parser, root_dir, rand_seed=None, possible_model_names=None
|
||||
# FAST training
|
||||
# use these settings to make sure network has no bugs without running a full dataset
|
||||
parser.add_argument('--fast_dev_run', dest='fast_dev_run', default=False, action='store_true',
|
||||
help='runs validation after 1 tng step')
|
||||
help='runs validation after 1 training step')
|
||||
parser.add_argument('--enable_tqdm', dest='enable_tqdm', default=False, action='store_true',
|
||||
help='false removes the prog bar')
|
||||
help='false removes the progress bar')
|
||||
parser.add_argument('--overfit', default=-1, type=float,
|
||||
help='% of dataset to use with this option. float, or -1 for none')
|
||||
|
||||
@@ -93,7 +93,7 @@ def add_default_args(parser, root_dir, rand_seed=None, possible_model_names=None
|
||||
parser.add_argument('--debug', dest='debug', action='store_true',
|
||||
help='enables/disables test tube')
|
||||
parser.add_argument('--local', dest='local', action='store_true',
|
||||
help='enables local tng')
|
||||
help='enables local training')
|
||||
|
||||
# optimizer
|
||||
parser.add_argument('--lr_scheduler_milestones', default=None, type=str)
|
||||
|
||||
+3
-3
@@ -1,7 +1,7 @@
|
||||
scikit-learn==0.20.2
|
||||
tqdm==4.32.1
|
||||
tqdm==4.35.0
|
||||
twine==1.13.0
|
||||
numpy==1.16.4
|
||||
torch>=1.1.0
|
||||
torch>=1.2.0
|
||||
torchvision>=0.3.0
|
||||
pandas
|
||||
pandas
|
||||
|
||||
@@ -14,7 +14,7 @@ from setuptools import setup, find_packages
|
||||
# engineer specific practices
|
||||
setup(
|
||||
name='pytorch-lightning',
|
||||
version='0.4.9',
|
||||
version='0.5.2.1',
|
||||
description='The Keras for ML researchers using PyTorch',
|
||||
author='William Falcon',
|
||||
author_email='waf2107@columbia.edu',
|
||||
@@ -29,7 +29,7 @@ setup(
|
||||
keywords=['deep learning', 'pytorch', 'AI'],
|
||||
python_requires='>=3.6',
|
||||
install_requires=[
|
||||
'torch==1.2.0',
|
||||
'torch>=1.2.0',
|
||||
'tqdm>=4.35.0',
|
||||
'test-tube>=0.6.9',
|
||||
'pandas>=0.20.3',
|
||||
@@ -51,7 +51,6 @@ setup(
|
||||
# Specify the Python versions you support here. In particular, ensure
|
||||
# that you indicate whether you support Python 2, Python 3 or both.
|
||||
'Programming Language :: Python :: 3',
|
||||
'Programming Language :: Python :: 3.5',
|
||||
'Programming Language :: Python :: 3.6',
|
||||
'Programming Language :: Python :: 3.7',
|
||||
],
|
||||
|
||||
+55
-239
@@ -14,6 +14,9 @@ from torch.utils.data import DataLoader
|
||||
from torchvision.datasets import MNIST
|
||||
import numpy as np
|
||||
import pdb
|
||||
# from test_models import assert_ok_test_acc, load_model, \
|
||||
# clear_save_dir, get_test_tube_logger, get_hparams, init_save_dir, \
|
||||
# init_checkpoint_callback, reset_seed, set_random_master_port
|
||||
|
||||
|
||||
class CoolModel(pl.LightningModule):
|
||||
@@ -32,7 +35,7 @@ class CoolModel(pl.LightningModule):
|
||||
def training_step(self, batch, batch_nb):
|
||||
x, y = batch
|
||||
y_hat = self.forward(x)
|
||||
return {'tng_loss': self.my_loss(y_hat, y)}
|
||||
return {'training_loss': self.my_loss(y_hat, y)}
|
||||
|
||||
def validation_step(self, batch, batch_nb):
|
||||
x, y = batch
|
||||
@@ -47,7 +50,7 @@ class CoolModel(pl.LightningModule):
|
||||
return [torch.optim.Adam(self.parameters(), lr=0.02)]
|
||||
|
||||
@pl.data_loader
|
||||
def tng_dataloader(self):
|
||||
def train_dataloader(self):
|
||||
return DataLoader(MNIST('path/to/save', train=True), batch_size=32)
|
||||
|
||||
@pl.data_loader
|
||||
@@ -58,240 +61,53 @@ class CoolModel(pl.LightningModule):
|
||||
def test_dataloader(self):
|
||||
return DataLoader(MNIST('path/to/save', train=False), batch_size=32)
|
||||
|
||||
|
||||
def get_model():
|
||||
# set up model with these hyperparams
|
||||
root_dir = os.path.dirname(os.path.realpath(__file__))
|
||||
hparams = Namespace(**{'drop_prob': 0.2,
|
||||
'batch_size': 32,
|
||||
'in_features': 28 * 28,
|
||||
'learning_rate': 0.001 * 8,
|
||||
'optimizer_name': 'adam',
|
||||
'data_root': os.path.join(root_dir, 'mnist'),
|
||||
'out_features': 10,
|
||||
'hidden_dim': 1000})
|
||||
model = LightningTemplateModel(hparams)
|
||||
|
||||
return model, hparams
|
||||
|
||||
|
||||
def get_exp(debug=True, version=None):
|
||||
# set up exp object without actually saving logs
|
||||
root_dir = os.path.dirname(os.path.realpath(__file__))
|
||||
save_dir = os.path.join(root_dir, 'save_dir')
|
||||
exp = Experiment(debug=debug, save_dir=save_dir, name='tests_tt_dir', version=version)
|
||||
return exp
|
||||
|
||||
|
||||
def init_save_dir():
|
||||
root_dir = os.path.dirname(os.path.realpath(__file__))
|
||||
save_dir = os.path.join(root_dir, 'save_dir')
|
||||
|
||||
if os.path.exists(save_dir):
|
||||
shutil.rmtree(save_dir)
|
||||
|
||||
os.makedirs(save_dir, exist_ok=True)
|
||||
|
||||
return save_dir
|
||||
|
||||
|
||||
def clear_save_dir():
|
||||
root_dir = os.path.dirname(os.path.realpath(__file__))
|
||||
save_dir = os.path.join(root_dir, 'save_dir')
|
||||
if os.path.exists(save_dir):
|
||||
shutil.rmtree(save_dir)
|
||||
|
||||
|
||||
def load_model(exp, save_dir, on_gpu, map_location=None, module_class=LightningTemplateModel):
|
||||
|
||||
# load trained model
|
||||
tags_path = exp.get_data_path(exp.name, exp.version)
|
||||
tags_path = os.path.join(tags_path, 'meta_tags.csv')
|
||||
|
||||
checkpoints = [x for x in os.listdir(save_dir) if '.ckpt' in x]
|
||||
weights_dir = os.path.join(save_dir, checkpoints[0])
|
||||
|
||||
trained_model = module_class.load_from_metrics(weights_path=weights_dir,
|
||||
tags_csv=tags_path,
|
||||
on_gpu=on_gpu,
|
||||
map_location=map_location)
|
||||
|
||||
assert trained_model is not None, 'loading model failed'
|
||||
|
||||
return trained_model
|
||||
|
||||
|
||||
def run_prediction(dataloader, trained_model):
|
||||
# run prediction on 1 batch
|
||||
for batch in dataloader:
|
||||
break
|
||||
|
||||
x, y = batch
|
||||
x = x.view(x.size(0), -1)
|
||||
|
||||
y_hat = trained_model(x)
|
||||
|
||||
# acc
|
||||
labels_hat = torch.argmax(y_hat, dim=1)
|
||||
val_acc = torch.sum(y == labels_hat).item() / (len(y) * 1.0)
|
||||
val_acc = torch.tensor(val_acc)
|
||||
val_acc = val_acc.item()
|
||||
assert val_acc > 0.70, 'this model is expected to get > 0.7 in test set (it got %f)' % val_acc
|
||||
|
||||
|
||||
# ------------------------------------------------------------------------
|
||||
def run_gpu_model_test(trainer_options, model, hparams, on_gpu=True):
|
||||
save_dir = init_save_dir()
|
||||
|
||||
# exp file to get meta
|
||||
exp = get_exp(False)
|
||||
exp.argparse(hparams)
|
||||
exp.save()
|
||||
|
||||
# exp file to get weights
|
||||
checkpoint = ModelCheckpoint(save_dir)
|
||||
|
||||
# add these to the trainer options
|
||||
trainer_options['checkpoint_callback'] = checkpoint
|
||||
trainer_options['experiment'] = exp
|
||||
|
||||
# fit model
|
||||
trainer = Trainer(**trainer_options)
|
||||
result = trainer.fit(model)
|
||||
|
||||
# correct result and ok accuracy
|
||||
assert result == 1, 'amp + ddp model failed to complete'
|
||||
|
||||
# test model loading
|
||||
pretrained_model = load_model(exp, save_dir, on_gpu)
|
||||
|
||||
# test new model accuracy
|
||||
run_prediction(model.test_dataloader, pretrained_model)
|
||||
|
||||
if trainer.use_ddp:
|
||||
# on hpc this would work fine... but need to hack it for the purpose of the test
|
||||
trainer.model = pretrained_model
|
||||
trainer.optimizers, trainer.lr_schedulers = pretrained_model.configure_optimizers()
|
||||
|
||||
# test HPC loading / saving
|
||||
trainer.hpc_save(save_dir, exp)
|
||||
trainer.hpc_load(save_dir, on_gpu=on_gpu)
|
||||
|
||||
clear_save_dir()
|
||||
|
||||
|
||||
def assert_ok_val_acc(trainer):
|
||||
# this model should get 0.80+ acc
|
||||
acc = trainer.tng_tqdm_dic['val_acc']
|
||||
assert acc > 0.50, f'model failed to get expected 0.50 validation accuracy. Got: {acc}'
|
||||
|
||||
|
||||
def assert_ok_test_acc(trainer):
|
||||
# this model should get 0.80+ acc
|
||||
acc = trainer.tng_tqdm_dic['test_acc']
|
||||
assert acc > 0.50, f'model failed to get expected 0.50 validation accuracy. Got: {acc}'
|
||||
|
||||
|
||||
def get_hparams(continue_training=False, hpc_exp_number=0):
|
||||
root_dir = os.path.dirname(os.path.realpath(__file__))
|
||||
|
||||
args = {
|
||||
'drop_prob': 0.2,
|
||||
'batch_size': 32,
|
||||
'in_features': 28 * 28,
|
||||
'learning_rate': 0.001 * 8,
|
||||
'optimizer_name': 'adam',
|
||||
'data_root': os.path.join(root_dir, 'mnist'),
|
||||
'out_features': 10,
|
||||
'hidden_dim': 1000}
|
||||
|
||||
if continue_training:
|
||||
args['test_tube_do_checkpoint_load'] = True
|
||||
args['hpc_exp_number'] = hpc_exp_number
|
||||
|
||||
hparams = Namespace(**args)
|
||||
return hparams
|
||||
|
||||
|
||||
def main():
|
||||
"""
|
||||
Make sure DDP + AMP continue training correctly
|
||||
:return:
|
||||
"""
|
||||
hparams = get_hparams()
|
||||
model = LightningTestModel(hparams)
|
||||
|
||||
trainer_options = dict(
|
||||
show_progress_bar=True,
|
||||
max_nb_epochs=4,
|
||||
gpus=2,
|
||||
distributed_backend='dp',
|
||||
)
|
||||
|
||||
save_dir = init_save_dir()
|
||||
|
||||
# exp file to get meta
|
||||
exp = get_exp(False)
|
||||
exp.argparse(hparams)
|
||||
exp.save()
|
||||
|
||||
# exp file to get weights
|
||||
checkpoint = ModelCheckpoint(save_dir)
|
||||
|
||||
# add these to the trainer options
|
||||
trainer_options['experiment'] = exp
|
||||
trainer_options['checkpoint_callback'] = checkpoint
|
||||
|
||||
# fit model
|
||||
trainer = Trainer(**trainer_options)
|
||||
trainer.is_slurm_managing_tasks = True
|
||||
result = trainer.fit(model)
|
||||
|
||||
# track epoch before saving
|
||||
real_global_epoch = trainer.current_epoch
|
||||
|
||||
# correct result and ok accuracy
|
||||
assert result == 1, 'amp + dp model failed to complete'
|
||||
|
||||
# ---------------------------
|
||||
# HPC LOAD/SAVE
|
||||
# ---------------------------
|
||||
# save
|
||||
trainer.hpc_save(save_dir, exp)
|
||||
|
||||
# init new trainer
|
||||
new_exp = get_exp(False, version=exp.version)
|
||||
trainer_options['experiment'] = new_exp
|
||||
trainer_options['checkpoint_callback'] = ModelCheckpoint(save_dir)
|
||||
trainer_options['train_percent_check'] = 0.2
|
||||
trainer_options['val_percent_check'] = 0.2
|
||||
trainer_options['max_nb_epochs'] = 1
|
||||
new_trainer = Trainer(**trainer_options)
|
||||
|
||||
# set the epoch start hook so we can predict before the model does the full training
|
||||
def assert_good_acc():
|
||||
assert trainer.current_epoch == real_global_epoch and trainer.current_epoch > 0
|
||||
|
||||
# if model and state loaded correctly, predictions will be good even though we
|
||||
# haven't trained with the new loaded model
|
||||
dp_model = new_trainer.model
|
||||
dp_model.eval()
|
||||
|
||||
_ = [run_prediction(dataloader, dp_model, dp=True) for dataloader in trainer.val_dataloader]
|
||||
|
||||
# new model
|
||||
model = LightningTestModel(hparams)
|
||||
model.on_sanity_check_start = assert_good_acc
|
||||
|
||||
# fit new model which should load hpc weights
|
||||
new_trainer.fit(model)
|
||||
|
||||
# test freeze on gpu
|
||||
model.freeze()
|
||||
model.unfreeze()
|
||||
|
||||
clear_save_dir()
|
||||
|
||||
|
||||
if __name__ == '__main__':
|
||||
main()
|
||||
#
|
||||
# def main():
|
||||
# reset_seed()
|
||||
# set_random_master_port()
|
||||
#
|
||||
# hparams = get_hparams()
|
||||
# model = LightningTestModel(hparams)
|
||||
#
|
||||
# save_dir = init_save_dir()
|
||||
#
|
||||
# # exp file to get meta
|
||||
# logger = get_test_tube_logger(False)
|
||||
#
|
||||
# print(logger.debug)
|
||||
#
|
||||
# # exp file to get weights
|
||||
# checkpoint = init_checkpoint_callback(logger)
|
||||
#
|
||||
# trainer_options = dict(
|
||||
# show_progress_bar=False,
|
||||
# max_nb_epochs=1,
|
||||
# train_percent_check=0.4,
|
||||
# val_percent_check=0.2,
|
||||
# checkpoint_callback=checkpoint,
|
||||
# logger=logger,
|
||||
# gpus=[0, 1],
|
||||
# distributed_backend='ddp'
|
||||
# )
|
||||
#
|
||||
# # fit model
|
||||
# trainer = Trainer(**trainer_options)
|
||||
# result = trainer.fit(model)
|
||||
#
|
||||
# exp = logger.experiment
|
||||
# print(os.listdir(exp.get_data_path(exp.name, exp.version)))
|
||||
#
|
||||
# # correct result and ok accuracy
|
||||
# assert result == 1, 'training failed to complete'
|
||||
# pretrained_model = load_model(logger.experiment, save_dir,
|
||||
# module_class=LightningTestModel)
|
||||
#
|
||||
# # run test set
|
||||
# new_trainer = Trainer(**trainer_options)
|
||||
# new_trainer.test(pretrained_model)
|
||||
#
|
||||
# # test we have good test accuracy
|
||||
# clear_save_dir()
|
||||
#
|
||||
# if __name__ == '__main__':
|
||||
# main()
|
||||
|
||||
@@ -5,4 +5,5 @@ pytest>=3.0.5
|
||||
pytest-cov
|
||||
flake8
|
||||
check-manifest
|
||||
test_tube
|
||||
test_tube
|
||||
mlflow
|
||||
|
||||
@@ -0,0 +1,181 @@
|
||||
import os.path
|
||||
import pickle
|
||||
import shutil
|
||||
|
||||
import numpy as np
|
||||
import torch
|
||||
from pytorch_lightning import Trainer
|
||||
|
||||
from pytorch_lightning.testing import LightningTestModel
|
||||
from pytorch_lightning.logging import LightningLoggerBase, rank_zero_only
|
||||
from .test_models import get_hparams, get_test_tube_logger, init_save_dir, clear_save_dir
|
||||
|
||||
RANDOM_SEEDS = list(np.random.randint(0, 10000, 1000))
|
||||
|
||||
|
||||
def test_testtube_logger():
|
||||
"""
|
||||
verify that basic functionality of test tube logger works
|
||||
"""
|
||||
reset_seed()
|
||||
|
||||
hparams = get_hparams()
|
||||
model = LightningTestModel(hparams)
|
||||
|
||||
save_dir = init_save_dir()
|
||||
|
||||
logger = get_test_tube_logger(False)
|
||||
|
||||
trainer_options = dict(
|
||||
max_nb_epochs=1,
|
||||
train_percent_check=0.01,
|
||||
logger=logger
|
||||
)
|
||||
|
||||
trainer = Trainer(**trainer_options)
|
||||
result = trainer.fit(model)
|
||||
|
||||
assert result == 1, "Training failed"
|
||||
|
||||
clear_save_dir()
|
||||
|
||||
|
||||
def test_testtube_pickle():
|
||||
"""
|
||||
Verify that pickling a trainer containing a test tube logger works
|
||||
"""
|
||||
reset_seed()
|
||||
|
||||
hparams = get_hparams()
|
||||
model = LightningTestModel(hparams)
|
||||
|
||||
save_dir = init_save_dir()
|
||||
|
||||
logger = get_test_tube_logger(False)
|
||||
logger.log_hyperparams(hparams)
|
||||
logger.save()
|
||||
|
||||
trainer_options = dict(
|
||||
max_nb_epochs=1,
|
||||
train_percent_check=0.01,
|
||||
logger=logger
|
||||
)
|
||||
|
||||
trainer = Trainer(**trainer_options)
|
||||
pkl_bytes = pickle.dumps(trainer)
|
||||
trainer2 = pickle.loads(pkl_bytes)
|
||||
trainer2.logger.log_metrics({"acc": 1.0})
|
||||
|
||||
|
||||
def test_mlflow_logger():
|
||||
"""
|
||||
verify that basic functionality of mlflow logger works
|
||||
"""
|
||||
reset_seed()
|
||||
|
||||
try:
|
||||
from pytorch_lightning.logging import MLFlowLogger
|
||||
except ModuleNotFoundError:
|
||||
return
|
||||
|
||||
hparams = get_hparams()
|
||||
model = LightningTestModel(hparams)
|
||||
|
||||
root_dir = os.path.dirname(os.path.realpath(__file__))
|
||||
mlflow_dir = os.path.join(root_dir, "mlruns")
|
||||
|
||||
logger = MLFlowLogger("test", f"file://{mlflow_dir}")
|
||||
logger.log_hyperparams(hparams)
|
||||
logger.save()
|
||||
|
||||
trainer_options = dict(
|
||||
max_nb_epochs=1,
|
||||
train_percent_check=0.01,
|
||||
logger=logger
|
||||
)
|
||||
|
||||
trainer = Trainer(**trainer_options)
|
||||
result = trainer.fit(model)
|
||||
|
||||
assert result == 1, "Training failed"
|
||||
|
||||
n = np.random.randint(0, 10000000, 1)[0]
|
||||
shutil.move(mlflow_dir, mlflow_dir + f'_{n}')
|
||||
|
||||
|
||||
def test_mlflow_pickle():
|
||||
"""
|
||||
verify that pickling trainer with mlflow logger works
|
||||
"""
|
||||
reset_seed()
|
||||
|
||||
try:
|
||||
from pytorch_lightning.logging import MLFlowLogger
|
||||
except ModuleNotFoundError:
|
||||
return
|
||||
|
||||
hparams = get_hparams()
|
||||
model = LightningTestModel(hparams)
|
||||
|
||||
root_dir = os.path.dirname(os.path.realpath(__file__))
|
||||
mlflow_dir = os.path.join(root_dir, "mlruns")
|
||||
|
||||
logger = MLFlowLogger("test", f"file://{mlflow_dir}")
|
||||
logger.log_hyperparams(hparams)
|
||||
logger.save()
|
||||
|
||||
trainer_options = dict(
|
||||
max_nb_epochs=1,
|
||||
logger=logger
|
||||
)
|
||||
|
||||
trainer = Trainer(**trainer_options)
|
||||
pkl_bytes = pickle.dumps(trainer)
|
||||
trainer2 = pickle.loads(pkl_bytes)
|
||||
trainer2.logger.log_metrics({"acc": 1.0})
|
||||
|
||||
|
||||
def test_custom_logger():
|
||||
|
||||
class CustomLogger(LightningLoggerBase):
|
||||
def __init__(self):
|
||||
super().__init__()
|
||||
self.hparams_logged = None
|
||||
self.metrics_logged = None
|
||||
self.finalized = False
|
||||
|
||||
@rank_zero_only
|
||||
def log_hyperparams(self, params):
|
||||
self.hparams_logged = params
|
||||
|
||||
@rank_zero_only
|
||||
def log_metrics(self, metrics, step_num):
|
||||
self.metrics_logged = metrics
|
||||
|
||||
@rank_zero_only
|
||||
def finalize(self, status):
|
||||
self.finalized_status = status
|
||||
|
||||
hparams = get_hparams()
|
||||
model = LightningTestModel(hparams)
|
||||
|
||||
logger = CustomLogger()
|
||||
|
||||
trainer_options = dict(
|
||||
max_nb_epochs=1,
|
||||
train_percent_check=0.01,
|
||||
logger=logger
|
||||
)
|
||||
|
||||
trainer = Trainer(**trainer_options)
|
||||
result = trainer.fit(model)
|
||||
assert result == 1, "Training failed"
|
||||
assert logger.hparams_logged == hparams
|
||||
assert logger.metrics_logged != {}
|
||||
assert logger.finalized_status == "success"
|
||||
|
||||
|
||||
def reset_seed():
|
||||
SEED = RANDOM_SEEDS.pop()
|
||||
torch.manual_seed(SEED)
|
||||
np.random.seed(SEED)
|
||||
+372
-201
File diff suppressed because it is too large
Load Diff
Reference in New Issue
Block a user