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68 Commits
Author SHA1 Message Date
Patrick Kidger c92b0d0ab1 Some improvements (#77)
* Various improvements.

- Added support for functions in symbolic dimensions, e.g. "min(foo,bar)", which were previously disallowed due to the presence of a comma. (#51)
- Added support for adding ignored names to dimensions, e.g. "cols=4". (#76)

* Now works with Python 3.10 A | B union types.
2023-04-13 19:18:55 +01:00
Patrick Kidger 158b8b8f0c Now works with torch.compile? (#72) 2023-04-13 18:53:14 +01:00
Patrick Kidger 9b6df18b83 Update FAQ to mention ruff 2023-03-19 22:21:21 +00:00
Patrick Kidger f0b240df5f Switched to ruff 2023-03-15 22:36:24 -07:00
Patrick Kidger a4d27c7cc1 Fixed _Jaxtyped.__get__, e.g. swallowing abstractmethod decorations 2023-03-15 22:27:36 -07:00
Patrick Kidger ee46c57e53 Version bump 2023-03-05 20:26:01 -08:00
Patrick Kidger 38be24f9c8 beartype+inheritance fix. Bool[int, '...'] now correctly raises an error. 2023-03-05 20:09:49 -08:00
Patrick Kidger e718f00cc5 Fixed import hook hitting __pycache__ even when you change the choice of runtime type checker 2023-03-05 16:19:44 -08:00
Patrick Kidger c232eeaa89 Fixed pytest plugin with new import hook typechecker syntax 2023-03-05 12:19:14 -08:00
Patrick Kidger e03c1c329e We now have Float[np.ndarray, ...] <: np.ndarray. Added basic torch tests. (#68)
This required quite a lot of refactoring! JAX supports virtual subclass registration (its metaclass is ABCMeta) but NumPy does not, so we have to actually subclass `np.ndarray`.
Simple stuff like __base__ hacking fails due to deallocator conflicts.
2023-03-04 17:29:04 +00:00
Patrick Kidger fef81cf0a0 The import hook now supports BeartypeConf/BeartypeStrategy 2023-03-03 10:34:03 -08:00
Patrick Kidger bf241b4e27 We now have e.g. Float[Array, ""] <: Array. 2023-03-03 10:32:26 -08:00
Patrick Kidger 5600a1aac8 Fixed cloudpickle breaking, mark 2 2023-03-02 17:37:53 -08:00
Patrick Kidger 2b339715f9 Fixed cloudpickle breaking 2023-03-02 12:35:38 -08:00
Zac Cranko 8c86958b77 Add TypeAlias decoration to PyTree (#66)
Doing this silences a *whole heap* of Pyright warnings that all say "Illegal type annotation: variable not allowed unless it is a type alias"
2023-02-28 01:23:47 +00:00
Patrick Kidger ffc56bf782 Edge case fix 2023-02-25 17:38:45 -08:00
Patrick Kidger 5c25da278a Bump version 2023-02-25 17:03:25 -08:00
Patrick Kidger e2f004afd4 Added support for jax.typing.ArrayLike; now works with PyTorch's bool 2023-02-25 17:01:27 -08:00
Patrick Kidger 81c56052e5 Fixes for some new failures. (Where did they come from?) (#65)
* Fixes for some new failures. (Where did they come from?)

* Fixed isort?
2023-02-16 10:08:57 -08:00
Patrick Kidger d911ebb99c Fix abstractmethods being ignored after @jaxtyped 2023-01-22 11:43:36 -08:00
Patrick Kidger f30b7d1546 Update README.md 2023-01-20 07:44:45 -08:00
Brent Yi 4b3f834e12 Fix vanilla dataclasses (#56) 2023-01-15 10:52:18 +01:00
Patrick Kidger 59e8fb0d18 Hopefully fixed PyTree raising spurious errors. Bit mysterious that this worked before, really. I've tested this fix as best I can against the various static type checkers, but these are weird and varied enough that this might not be a perfect fix. If you see this and have issues, let me know. (#54) 2022-12-30 19:00:26 +00:00
Patrick Kidger 7dba3516c2 Fixed working with the new (unreleased) version of typeguard (#53) 2022-12-29 17:46:25 +00:00
Patrick Kidger 2b1be5eb0a Update README.md 2022-12-07 17:22:57 -08:00
Brent Yi 7b3d9a2e9a Explicitly export names in jaxtyping.* (#49)
* Explicitly export names to make pyright happy

* Bump jax and jaxtyping versions

* Add note on `jaxtyping` names

* Remove __all__ from `array_types.py`

* Appease flake8

* Reduce import redundancy

* Fix capitalization
2022-12-07 17:21:33 -08:00
Patrick Kidger 29654e7087 JAX is no longer a hard dependency (to support e.g. PyTorch) (#50) 2022-12-07 10:48:47 -08:00
Patrick Kidger 8fbf7bf3a5 added link to eqxvision 2022-12-05 11:37:32 -08:00
Patrick Kidger a220df9964 The import hook now decorates dataclass __init__ methods (#48) 2022-11-16 13:38:04 -08:00
Kevin P Murphy 784aa78f7c update jaxtyped decorator (#44)
* update jaxtyped decorator

* add newline character to pacify flake

* add precomit hooks

* add missing return statement

* replace typing_extensions>=4.2.0 with typing_extensions

* pin version range for typing_extensions

* set min version of typing-extensions but not max

* bump version number to 0.2.8
2022-11-13 22:25:28 -08:00
Patrick Kidger 3f877c0dbb Update array_types.py (#41) 2022-11-08 22:52:17 -08:00
Patrick Kidger 607f3c66b5 Silenced warning (#40) 2022-10-28 15:19:52 -07:00
Peter Roelants d3651ca70e NamedTuple example (#36) 2022-10-03 07:40:51 -07:00
Patrick Kidger d246e21281 Better import hook (#35) 2022-09-25 23:28:40 -07:00
Patrick Kidger 165065756f Static type-checking fix (#34) 2022-09-24 18:27:22 -07:00
ebrevdo dcd73e3431 Add support for e.g. jaxtyping.Float[Union[...], ...] in py3.8 (#31)
* Add support for e.g. jaxtyping.Float[Union[...], ...] in py3.8

Turns out that python3.8, Union lacks the __name__ attribute.  Use repr()
in these cases.

* Fix linter.

* Remove implicit cast to bool in favor of try/except.
2022-09-22 13:25:29 -07:00
Patrick Kidger f175c7f315 Fixed py.type not being packaged (#30) 2022-09-22 12:16:25 -07:00
Patrick Kidger da8300ec6c tidyness tweak (#28) 2022-09-20 15:16:52 -07:00
Patrick Kidger 39439c2790 More fixes (#27)
* Edge-case doc fixes for parameterising types with PyTrees or AbstractDtypes

* Fixes for threading

* version bump
2022-09-20 15:12:21 -07:00
Patrick Kidger 6202dcc639 doc fix (#26) 2022-09-19 23:30:29 -07:00
Patrick Kidger c2e9d913d5 Fixed jaxtyped breaking descriptors. Fixed long module names. (#25) 2022-09-19 22:40:25 -07:00
Patrick Kidger 62ddcc25b5 Threading fix (#24) 2022-09-16 08:04:28 -07:00
Patrick Kidger a89ebe356b Merge pull request #22 from google/v021
Bump version
2022-09-15 08:19:08 -07:00
Patrick Kidger 98133f5e1e Bump version 2022-09-15 16:15:28 +01:00
Patrick Kidger 2c7dbbd593 Merge pull request #21 from google/pytyped
Create `py.typed`
2022-09-15 08:15:03 -07:00
Patrick Kidger 1291a90192 Merge pull request #20 from google/bool-checking
Fix for boolean checking not working
2022-09-15 08:14:56 -07:00
Patrick Kidger 14117804aa Create py.typed 2022-09-15 16:07:02 +01:00
Patrick Kidger e61a37f0a3 Fix for boolean checking not working (#19) 2022-09-15 16:05:49 +01:00
Patrick Kidger 3c7e4e11ee Merge pull request #16 from google/rewrite
Rewrite!
2022-09-07 12:30:59 -07:00
Patrick Kidger 01f8f20bf5 Fixed a few names 2022-09-07 12:20:42 -07:00
Patrick Kidger cb11a93b22 doc tweaks 2022-09-07 12:06:15 -07:00
Patrick Kidger c82fbbea4e doc tweaks 2022-09-07 12:00:58 -07:00
Patrick Kidger f28b0c789a doc tweaks 2022-09-07 11:32:14 -07:00
Patrick Kidger a53fe6af57 Changes from feedback:
- Float32 introduced to replace f32 (etc.)
- Old f32 aliases were previously around for backward-compatibility, but
  the code is pretty hideous, and all stakeholders are now on board
  through RFC #13.
- Overall feedback was that Int{Sign,Unsign} was too long and not enough
  like numpy. Changed to Int, UInt, and Integer.
2022-09-07 11:09:48 -07:00
Patrick Kidger 140be9ecec Doc updates 2 2022-08-30 13:26:41 -07:00
Patrick Kidger 07e735797e Doc updates 2022-08-30 13:14:50 -07:00
Patrick Kidger 48e8131247 Added jaxtyping.Array=jnp.ndarray 2022-08-30 12:56:47 -07:00
Patrick Kidger 903000f3d5 Rewrote syntax 2022-08-30 12:47:45 -07:00
Patrick Kidger 3f9fad59bd Merge pull request #11 from google/v010
Version 0.1.0
2022-08-01 01:09:25 +01:00
Patrick Kidger 8f64c99649 Pre-commit fixes 2022-08-01 01:06:45 +01:00
Patrick Kidger 3e86c704ae Bump version 2022-08-01 01:01:59 +01:00
Patrick Kidger 07259aa5c8 Added support for symbolic expressions in axes. Closes #9. 2022-08-01 01:00:18 +01:00
Patrick Kidger 6ff4620d1a Broadcast+variadic is now more lenient, and supports anything broadcastable together. Closes #8 2022-07-31 23:59:20 +01:00
Patrick Kidger 6e2837e5b7 Tidied up _#* into acting as prefixes, regardless of order. Closes #10 2022-07-31 23:45:40 +01:00
Patrick Kidger 7b698ae215 Merge pull request #3 from google/test-tidy
Test tidy
2022-07-12 10:11:50 +01:00
Patrick Kidger e162e1281a Made missing beartype result in test skips rather than tests not running 2022-07-12 10:07:42 +01:00
Patrick Kidger 9f75958b2d Make test/helpers.py a relative import 2022-07-12 10:03:19 +01:00
Patrick Kidger 81238e38e8 Update tests to make beartype optional 2022-07-11 19:27:16 +01:00
37 changed files with 1706 additions and 453 deletions
-4
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@@ -1,4 +0,0 @@
[flake8]
max-line-length = 120
ignore = W291,W293,W503,W504,E123,E126,E203,E402,E701,E731,F722
per-file-ignores = __init__.py: F401
+2 -1
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@@ -33,7 +33,8 @@ jobs:
with:
python-version: "3.8"
test-script: |
python -m pip install pytest beartype equinox jaxlib
python -m pip install pytest beartype equinox jaxlib cloudpickle
python -m pip install torch --extra-index-url https://download.pytorch.org/whl/cpu
cp -r ${{ github.workspace }}/test ./test
pytest
pypi-token: ${{ secrets.pypi_token }}
+3 -2
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@@ -26,7 +26,7 @@ jobs:
run-tests:
strategy:
matrix:
python-version: [ 3.7, 3.8, 3.9 ]
python-version: [ 3.8, 3.9 ]
os: [ ubuntu-latest ]
fail-fast: false
runs-on: ${{ matrix.os }}
@@ -42,7 +42,8 @@ jobs:
- name: Install dependencies
run: |
python -m pip install --upgrade pip
python -m pip install pytest wheel beartype equinox jaxlib
python -m pip install pytest wheel beartype equinox jaxlib cloudpickle
python -m pip install torch --extra-index-url https://download.pytorch.org/whl/cpu
- name: Checks with pre-commit
uses: pre-commit/action@v2.0.3
-6
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@@ -1,6 +0,0 @@
[settings]
force_alphabetical_sort_within_sections=true
lines_after_imports=2
profile=black
treat_comments_as_code=true
extra_standard_library=typing_extensions
+3 -13
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@@ -22,17 +22,7 @@ repos:
rev: 22.3.0
hooks:
- id: black
- repo: https://github.com/nbQA-dev/nbQA
rev: 1.2.3
- repo: https://github.com/charliermarsh/ruff-pre-commit
rev: 'v0.0.255'
hooks:
- id: nbqa-black
- id: nbqa-isort
- id: nbqa-flake8
- repo: https://github.com/PyCQA/isort
rev: 5.10.1
hooks:
- id: isort
- repo: https://github.com/pycqa/flake8
rev: 4.0.1
hooks:
- id: flake8
- id: ruff
+103 -65
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@@ -2,60 +2,81 @@
## Annotating array types
Each array is denoted by a type `dtype[shape]`, such as `f32["batch channels"]`.
Each array is denoted by a type `dtype[array, shape]`, such as `Float[Array, "batch channels"]`.
### Shape
The shape should be a string of space-separated symbols, such as "a b c d". Each symbol can be:
- `int`: fixed-size axis, e.g. `f32["28 28"]`.
- `str`: variable-size axis, e.g. `f32["channels"]`.
- `_`: anonymous axis, e.g. `f32["batch channels _ _"]`.
- `...`: anonymous zero or more axes, e.g. `f32["... c h w"]`
- `*name`: zero or more variable-size axes, e.g. `f32["*batch c h w"]`
- Append `#` to a dimension size to indicate that it can be that size *or* equal to one -- i.e. broadcasting is acceptable.
The shape should be a string of space-separated symbols, such as `"a b c d"`. Each symbol can be either an:
- `int`: fixed-size axis, e.g. `"28 28"`.
- `str`: variable-size axis, e.g. `"channels"`.
- A symbolic expression (without spaces!) in terms of other variable-size axes, e.g. `def remove_last(x: Float[Array, "dim"]) -> Float[Array, "dim-1"]`.
When calling a function, variable-size axes will be matched up across all arguments and checked for consistency. (See [runtime type checking](#runtime-type-checking) below.)
When calling a function, variable-size axes and symbolic axes will be matched up across all arguments and checked for consistency. (See [runtime type checking](#runtime-type-checking) below.)
In addition some modifiers can be applied:
- Prepend `*` to a dimension to indicate that it can match multiple axes, e.g. `"*batch c h w"` will match zero or more batch axes.
- Prepend `#` to a dimension to indicate that it can be that size *or* equal to one -- i.e. broadcasting is acceptable, e.g. `def add(x: Float[Array, "#foo"], y: Float[Array, "#foo"]) -> Float[Array, "#foo"]`.
- Prepend `_` to a dimension to disable any runtime checking of that dimension (so that it can be used just as documentation). This can also be used as just `_` on its own: e.g. `"b c _ _"`.
- Documentation-only names (i.e. they're ignored by jaxtyping) can be handled by prepending a name followed by `=` e.g. `Float[Array, "rows=4 cols=3"]`.
When using multiple modifiers, their order does not matter.
As a special case:
- `...`: anonymous zero or more axes (equivalent to `*_`) e.g. `"... c h w"`
Some notes:
- To denote a scalar shape use `""`, e.g. `f32[""]`.
- To denote an arbitrary shape (and only check dtype) use `"..."`, e.g. `f32["..."]`.
- You cannot have multiple variadic axes, i.e. you can only use `...` or `*name` at most once in each array.
- An example of broadcasting in one dimension: `add(x: f32["foo#"], y: f32["foo#"]) -> f32["foo#"]`.
- An example of broadcasting multiple dimensions: `add(x: f32["*foo#"], y: f32["*foo#"]) -> f32["*foo#"]`.
- To denote a scalar shape use `""`, e.g. `Float[Array, ""]`.
- To denote an arbitrary shape (and only check dtype) use `"..."`, e.g. `Float[Array, "..."]`.
- You cannot have more than one use of multiple-axes, i.e. you can only use `...` or `*name` at most once in each array.
- An example of broadcasting multiple dimensions: `def add(x: Float[Array, "*#foo"], y: Float[Array, "*#foo"]) -> Float[Array, "*#foo"]`.
- A symbolic expression cannot be evaluated unless all of the axes sizes it refers to have already been processed. In practice this usually means that they should only be used in annotations for the return type, and only use axes declared in the arguments.
### Dtype
The dtype should be any one of (imported from `jaxtyping`):
- Any dtype at all: `Array`
- Boolean: `b`
- Any integer, unsigned integer, floating, or complex: `n` (for <ins>n</ins>umber)
- Any floating or complex: `x` (for ine<ins>x</ins>act)
- Any floating point: `f`
- Floating point: `bf16`, `f16`, `f32`, `f64` (`bf16` is bfloat16)
- Any complex: `c`
- Complexes: `c64`, `c128`
- Any integer or unsigned intger: `t` (for in<ins>t</ins>eger)
- Any unsigned integer: `u`
- Unsigned integer: `u8`, `u16`, `u32`, `u64`
- Any signed integer: `i`
- Signed integer: `i8`, `i16`, `i32`, `i64`
- Any dtype at all: `Shaped`
- Boolean: `Bool`
- Any integer, unsigned integer, floating, or complex: `Num`
- Any floating or complex: `Inexact`
- Any floating point: `Float`
- Of particular precision: `BFloat16`, `Float16`, `Float32`, `Float64`
- Any complex: `Complex`
- Of particular precision: `Complex64`, `Complex128`
- Any integer or unsigned intger: `Integer`
- Any unsigned integer: `UInt`
- Of particular precision: `UInt8`, `UInt16`, `UInt32`, `UInt64`
- Any signed integer: `Int`
- Of particular precision: `Int8`, `Int16`, `Int32`, `Int64`
Unless you really want to force a particular precision, then for most applications you should probably allow any floating-point, any integer, etc. That is, use
```python
from jaxtyping import f
f["some_shape"]
from jaxtyping import Array, Float
Float[Array, "some_shape"]
```
rather than
```python
from jaxtyping import f32
f32["some_shape"]
from jaxtyping import Array, Float32
Float32[Array, "some_shape"]
```
### Array
The array should typically be a `jaxtyping.Array`, which is an alias for `jax.numpy.ndarray`.
`jaxtyping.ArrayLike` is also available, which is an alias for `jax.typing.ArrayLike`. This is a union over JAX arrays and the builtin `bool`/`int`/`float`/`complex`.
But you can use other types as well. `jaxtyping` has support for JAX, NumPy, TensorFlow, and PyTorch, e.g.:
```python
Float[np.ndarray, "..."]
Float[tf.Tensor, "..."]
Float[torch.Tensor, "..."]
```
## PyTrees
### `jaxtyping.PyTree`
Each PyTree is denoted by a type `PyTree[LeafType]`, such as `PyTree[int]` or `PyTree[Union[str, f32["b c"]]]`.
Each PyTree is denoted by a type `PyTree[LeafType]`, such as `PyTree[int]` or `PyTree[Union[str, Float32[Array, "b c"]]]`.
You can leave off the `[...]`, in which case `PyTree` is simply a suggestively-named alternative to `Any`. ([By definition all types are PyTrees.](https://jax.readthedocs.io/en/latest/pytrees.html))
@@ -67,7 +88,7 @@ To enable multi-argument consistency checks (i.e. that shapes match up between a
Regardless of your choice, **this approach synergises beautifully with `jax.jit`!** All shape checks will be performed at trace-time only, and will not impact runtime performance.
### `jaxtyping.jaxtyped`
### Option 1: `jaxtyping.jaxtyped`
Decorate a function with this to have shapes checked for consistency across multiple arguments.
@@ -75,7 +96,7 @@ Example:
```python
# Import both the annotation and the `jaxtyped` decorator from `jaxtyping`
from jaxtyping import f32, jaxtyped
from jaxtyping import Array, Float32, jaxtyped
# Use your favourite typechecker: usually one of the two lines below.
from typeguard import typechecked as typechecker
@@ -84,7 +105,9 @@ from beartype import beartype as typechecker
# Write your function. @jaxtyped must be applied above @typechecker!
@jaxtyped
@typechecker
def batch_outer_product(x: f32["b c1"], y: f32["b c2"]) -> f32["b c1 c2"]:
def batch_outer_product(x: Float32[Array, "b c1"],
y: Float32[Array, "b c2"]
) -> Float32[Array, "b c1 c2"]:
return x[:, :, None] * y[:, None, :]
```
@@ -102,35 +125,44 @@ this function use the same axes sizes as the function it was called from.
Likewise, this means you can use `isinstance` checks inside a function body
and have them contribute to the same collection of consistency checks performed
by a typechecker against its arguments. (Or even forgo a typechecker altogether,
and just do your own manual `isinstance` checks.)
by a typechecker against its arguments. (Or even forgo a typechecker that analyses arguments,
and instead just do your own manual `isinstance` checks.)
Only `isinstance` checks that pass will contribute to the store of axis name-size pairs; those
that fail will not. As such it is safe to write e.g. `assert not isinstance(x,
f32["foo"])`.
Float32[Array, "foo"])`.
### `jaxtyping.install_import_hook`
### Option 2: `jaxtyping.install_import_hook`
It can be a lot of effort to add `@jaxtyped` decorators all over your codebase.
(Not to mention that double-decorators everywhere are a bit ugly.) The easier
option is usually to use the import import hook.
(Not to mention that double-decorators everywhere are a bit ugly.)
Example:
The easier option is usually to use the import hook.
This can be used via a `with` block; for example:
```python
from jaxtyping import install_import_hook
# Plus either one of the following:
install_import_hook("foo", ("typeguard", "typechecked")) # decorate @jaxtyped and @typeguard.typechecked
install_import_hook("foo", ("beartype", "beartype")) # decorate @jaxtyped and @beartype.beartype
install_import_hook("foo", None) # decorate only @jaxtyped (if you have manually applied typechecking decorators)
# Plus any one of the following:
# decorate @jaxtyped and @typeguard.typechecked
with install_import_hook("foo", "typeguard.typechecked"):
import foo # Any module imported inside this `with` block, whose name begins
import foo.bar # with the specified string, will automatically have both `@jaxtyped`
import foo.bar.qux # and the specified typechecker applied to all of their functions.
# decorate @jaxtyped and @beartype.beartype
with install_import_hook("foo", "beartype.beartype"):
...
# decorate only @jaxtyped (if you want that for some reason)
with install_import_hook("foo", None):
...
```
Any module imported **afterwards**, whose name begins with the specified string, will automatically have both `@jaxtyped` and the specified typechecker applied to all of their functions. (E.g. in the above example `foo`, `foo.bar`, `foo.bar.qux` would all be hook'd).
The import hook may be uninstalled after you've imported all the modules you're interested in:
If you don't like using the `with` block, the hook can be used without that:
```python
hook = install_import_hook(...)
... # perform imports
hook = install_import_hook(...):
import ...
hook.uninstall()
```
@@ -139,18 +171,20 @@ The import hook can be applied to multiple packages via
install_import_hook(["foo", "bar.baz"], ...)
```
The import hook will automatically decorate all functions, and the `__init__` method of dataclasses.
**Example: writing an end-user script**
```python
### entry_point.py
from jaxtyping import install_import_hook
install_import_hook("do_stuff", ("typeguard", "typechecked"))
import do_stuff
with install_import_hook("do_stuff", "typeguard.typechecked"):
import do_stuff
### do_stuff.py
from jaxtyping import f32
from jaxtyping import Array, Float32
def g(x: f32["..."]):
def g(x: Float32[Array, "..."]):
...
```
@@ -159,11 +193,9 @@ def g(x: f32["..."]):
```python
### __init__.py
from jaxtyping import install_import_hook
hook = install_import_hook("my_library_name", ("beartype", "beartype"))
from .subpackage import foo # full name is my_library_name.subpackage so will be hook'd
from .another_subpackage import bar # full name is my_library_name.another_subpackage so will be hook'd.
hook.uninstall()
del hook, install_import_hook, jaxtyping # keep interface tidy
with install_import_hook("my_library_name", "beartype.beartype"):
from .subpackage import foo # full name is my_library_name.subpackage so will be hook'd
from .another_subpackage import bar # full name is my_library_name.another_subpackage so will be hook'd.
```
#### pytest hook
@@ -174,23 +206,29 @@ pytest --jaxtyping-packages=foo,bar.baz,beartype.beartype
```
which will apply the import hook to all modules whose names start with either `foo` or `bar.baz`. The typechecker used in this example is `beartype.beartype`.
## Static type checking
jaxtyping should be compatible with static type checkers (the big three are `mypy`, `pyright`, `pytype`) out of the box.
Due to limitations of static type checkers, only the array type (JAX array vs NumPy array vs PyTorch tensor vs TensorFlow tensor) is checked. Shape and dtype are not checked. [See the FAQ](./FAQ.md) for more details.
## Abstract base classes
### `jaxtyping.AbstractDtype`
The base class of all dtypes. This can be used to create your own custom collection of dtypes (analogous to `n`, `x` etc.) For example:
The base class of all dtypes. This can be used to create your own custom collection of dtypes (analogous to `Float`, `Inexact` etc.) For example:
```python
class u8_or_u16(AbstractDtype):
class UInt8or16(AbstractDtype):
dtypes = ["uint8", "uint16"]
u8_or_u16["shape"]
UInt8or16[Array, "shape"]
```
which is functionally equivalent to
```python
Union[u8["shape"], u16["shape"]]
Union[UInt8[Array, "shape"], UInt16[Array, "shape"]]
```
### `jaxtyping.AbstractArray`
The base class of all shape-and-dtype-specified arrays, e.g. it's a base class
for `f32["foo"]`.
for `Float32[Array, "foo"]`.
+2 -1
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@@ -28,7 +28,8 @@ Now make your changes. Make sure to include additional tests if necessary.
Next verify the tests all pass:
```bash
pip install pytest
pip install pytest cloudpickle
pip install torch --extra-index-url https://download.pytorch.org/whl/cpu
pytest
```
+30 -25
View File
@@ -1,43 +1,48 @@
# FAQ
## `flake8` is throwing an error.
## Does jaxtyping work with static type checkers like `mypy`/`pyright`/`pytype`?
There is partial support for these. An annotation of the form `dtype[array, shape]` should be treated as just `array` by a static type checker. Unfortunately full dtype/shape checking is beyond the scope of what static type checking is currently capable of.
(Note that at time of writing, `pytype` has a bug in that `dtype[array, shape]` is sometimes treated as `Any` rather than `array`. `mypy` and `pyright` both work fine.)
## How does jaxtyping interact with `jax.jit`?
jaxtyping and `jax.jit` synergise beautifully.
When calling JAX operations wrapped in a `jax.jit`, then the dtype/shape-checking will happen at trace time. (When JAX traces your function prior to compiling it.) The actual compiled code does not have any dtype/shape-checking, and will therefore still be just as fast as before!
## `flake8` or Ruff are throwing an error.
In type annotations, strings are used for two different things. Sometimes they're strings. Sometimes they're "forward references", used to refer to a type that will be defined later.
Some tooling in the Python ecosystem assumes that only the latter is true, and will throw spurious errors if you try to use a string just as a string (like we do).
In the case of `flake8`, at least, this is easily resolved. Multi-dimensional arrays (e.g. `f32["b c"]`) will throw a very unusual error (F722, syntax error in forward annotation), so you can safely just disable this particular error globally. Uni-dimensional arrays (e.g. `f32["x"]`) will throw an error that's actually useful (F821, undefined name), so instead of disabling this globally, you should instead prepend a space to the start of your shape, e.g. `f32[" x"]`. `jaxtyping` will treat this in the same way, whilst `flake8` will now throw an F722 error that you can disable as before.
In the case of `flake8`, or Ruff, this can be resolved. Multi-dimensional arrays (e.g. `Float32[Array, "b c"]`) will throw a very unusual error (F722, syntax error in forward annotation), so you can safely just disable this particular error globally. Uni-dimensional arrays (e.g. `Float32[Array, "x"]`) will throw an error that's actually useful (F821, undefined name), so instead of disabling this globally, you should instead prepend a space to the start of your shape, e.g. `Float32[Array, " x"]`. `jaxtyping` will treat this in the same way, whilst `flake8` will now throw an F722 error that you can disable as before.
## What about support for static type checkers, like `mypy`, `pyright`, etc.?
## Does jaxtyping use [PEP 646](https://www.python.org/dev/peps/pep-0646/) (variadic generics)?
Nope.
The intention of PEP 646 was to make it possible for static type checkers to perform shape checks of arrays. Unfortunately, this still isn't yet practical, so jaxtyping deliberately does not use this. (Yet?)
Python's static typing ecosystem is a complicated collection of edge cases. Many of them block ML/scientific computing in particular. A few examples:
The real problem is that Python's static typing ecosystem is a complicated collection of edge cases. Many of them block ML/scientific computing in particular. For example:
1. The static type system is intrinsically not expressive enough to describe operations like concatenation, stacking, or broadcasting.
2. Axes have to be lifted to type-level variables. Meanwhile the approach taken in libraries like `jaxtyping` and [TorchTyping](https://github.com/patrick-kidger/torchtyping) is to use value-level variables for types: because that's what the underlying JAX, PyTorch etc. libraries use! As such, making a static type checker work with these libraries would require either fundamentally rewriting these libraries, or exhaustively maintaining type stubs for them, and would *still* require a `typing.cast` any time you use anything unstubbed (e.g. any third party library, or part of your codebase you haven't typed yet). This is a huge maintenance burden for anyone.
2. Axes have to be lifted to type-level variables. Meanwhile the approach taken in libraries like `jaxtyping` and [TorchTyping](https://github.com/patrick-kidger/torchtyping) is to use value-level variables for types: because that's what the underlying JAX, PyTorch etc. libraries use! As such, making a static type checker work with these libraries would require either fundamentally rewriting these libraries, or exhaustively maintaining type stubs for them, and would *still* require a `typing.cast` any time you use anything unstubbed (e.g. any third party library, or part of your codebase you haven't typed yet). This is a huge maintenance burden.
3. Static type checkers have a variety of bugs that affect this use case. `mypy` doesn't support `Protocol`s correctly. `pyright` doesn't support genericised subprotocols. etc.
4. Variadic generics exist. Variadic protocols do not. (It's not clear that these have been contemplated.)
4. Variadic generics exist. Variadic protocols do not. (It's not clear that these were contemplated.)
5. The syntax for static typing is verbose. You have to write things like `Array[Unpack[AnyShape], Literal[3], Height, Width]` instead of `Array["... 3 height width"]`.
5. The syntax for static typing is a little verbose. You have to write things like `Array[Float32, Unpack[AnyShape], Literal[3], Height, Width]` instead of `Float32[Array, "... 3 height width"]`.
6. [The underlying type system has flaws](https://github.com/patrick-kidger/torchtyping/issues/37#issuecomment-1153294196). [The numeric tower is broken](https://stackoverflow.com/a/69383462); [int is not a number](https://github.com/python/mypy/issues/3186#issuecomment-885718629); [virtual base classes don't work](https://github.com/python/mypy/issues/2922); [complex lies about having comparison operations, so type checkers have to lie about that lie in order to remove them again](https://posita.github.io/numerary/0.4/whytho/); `typing.*` don't work with `isinstance`; co/contra-variance are baked into containers (not specified at use-time); `dict` is variadic despite... not being variadic; bool is a subclass of int (!); ... etc. etc.
## What about [PEP 646](https://www.python.org/dev/peps/pep-0646/) and variadic generics?
[Doesn't change the previous issues, unfortunately.](https://github.com/patrick-kidger/torchtyping/issues/37) All the problems of the previous heading still hold true. They're just also true for types like `AnyDimensionalArray[Batch, Channels, AsManyArgumentsAsWePlease]` as well as types like `TwoDimensionalArray[Batch, Channels]`.
## Is the lack of interaction with static typing a problem?
At least for any software that is mostly just running JAX code, no!
The correct way to use JAX is to put together all your operations, and then put a single `jax.jit` right at the very top. This gives you optimal speed; anything else will be unnecessarily (and substantially) slower.
This means that all the type checking only gets resolved once: at trace time. Afterwards JAX still lowers everything down to the same optimised code.
In some sense, `python myprogram.py` just ends up doing the same as `mypy myprogram.py`. Except instead of throwing away all the work used to parse your code, build the abstract syntax tree, etc. (and requiring you to then run `python myprogram.py` afterwards to actually use it), it can keep it around and just run your code immediately.
TL;DR: `jax.jit` is amazing.
6. [The underlying type system has flaws](https://github.com/patrick-kidger/torchtyping/issues/37#issuecomment-1153294196).
[The numeric tower is broken](https://stackoverflow.com/a/69383462);
[int is not a number](https://github.com/python/mypy/issues/3186#issuecomment-885718629);
[virtual base classes don't work](https://github.com/python/mypy/issues/2922);
[complex lies about having comparison operations, so type checkers have to lie about that lie in order to remove them again](https://posita.github.io/numerary/0.4/whytho/);
`typing.*` don't work with `isinstance`;
co/contra-variance are baked into containers (not specified at use-time);
`dict` is variadic despite... not being variadic;
bool is a subclass of int (!);
... etc. etc.
+2 -2
View File
@@ -1,2 +1,2 @@
include LICENSE
prune tests
include jaxtyping/py.typed
prune test
+13 -11
View File
@@ -2,20 +2,24 @@
Type annotations **and runtime checking** for:
1. shape and dtype of [JAX](https://github.com/google/jax) arrays;
1. shape and dtype of [JAX](https://github.com/google/jax) arrays; *(Now also supports PyTorch, NumPy, and TensorFlow!)*
2. [PyTrees](https://jax.readthedocs.io/en/latest/pytrees.html).
**For example:**
```python
from jaxtyping import f32, PyTree
from jaxtyping import Array, Float, PyTree
def matrix_multiply(x: f32["dim1 dim2"], y: f32["dim2 dim3"]) -> f32["dim1 dim3"]:
# Accepts floating-point 2D arrays with matching dimensions
def matrix_multiply(x: Float[Array, "dim1 dim2"],
y: Float[Array, "dim2 dim3"]
) -> Float[Array, "dim1 dim3"]:
...
def accepts_pytree_of_ints(x: PyTree[int]):
...
def accepts_pytree_of_arrays(x: PyTree[f32["batch c1 c2"]]):
def accepts_pytree_of_arrays(x: PyTree[Float[Array, "batch c1 c2"]]):
...
```
@@ -25,7 +29,9 @@ def accepts_pytree_of_arrays(x: PyTree[f32["batch c1 c2"]]):
pip install jaxtyping
```
Requires JAX 0.3.4+.
Requires Python 3.8+.
JAX is an optional dependency, required for `jaxtyping.{Array, ArrayLike, PyTree}`. If JAX is not installed then these types will not be available, but you may still use jaxtyping alongside PyTorch/NumPy/etc.
Also install your favourite runtime type-checking package. The two most popular are [typeguard](https://github.com/agronholm/typeguard) (which exhaustively checks every argument) and [beartype](https://github.com/beartype/beartype) (which checks random pieces of arguments).
@@ -43,14 +49,10 @@ Neural networks: [Equinox](https://github.com/patrick-kidger/equinox).
Numerical differential equation solvers: [Diffrax](https://github.com/patrick-kidger/diffrax).
Computer vision models: [Eqxvision](https://github.com/paganpasta/eqxvision).
SymPy<->JAX conversion; train symbolic expressions via gradient descent: [sympy2jax](https://github.com/google/sympy2jax).
### Acknowledgements
Shape annotations + runtime type checking is inspired by [TorchTyping](https://github.com/patrick-kidger/torchtyping).
The concise syntax is inspired by [etils.array_types](https://github.com/google/etils/tree/main/etils/array_types).
### Disclaimer
This is not an official Google product.
+94 -31
View File
@@ -17,38 +17,101 @@
# IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN
# CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
import typing
try:
import jax
except ImportError:
has_jax = False
else:
has_jax = True
del jax
# Type checkers don't know which branch below will be executed.
if typing.TYPE_CHECKING:
# For imports, we need to explicitly `import X as X` in order for Pyright to see
# them as public. See discussion at https://github.com/microsoft/pyright/issues/2277
from jax import Array as Array
from jax.typing import ArrayLike as ArrayLike
elif has_jax:
if getattr(typing, "GENERATING_DOCUMENTATION", False):
class Array:
pass
Array.__module__ = "builtins"
class ArrayLike:
pass
ArrayLike.__module__ = "builtins"
else:
from jax import Array as Array
try:
from jax.typing import ArrayLike as ArrayLike
except (ModuleNotFoundError, ImportError):
pass
from .array_types import (
AbstractArray,
AbstractDtype,
Array,
b,
bf16,
c,
c64,
c128,
f,
f16,
f32,
f64,
get_array_name_format,
i,
i8,
i16,
i32,
i64,
n,
set_array_name_format,
t,
u,
u8,
u16,
u32,
u64,
x,
AbstractArray as AbstractArray,
AbstractDtype as AbstractDtype,
BFloat16 as BFloat16,
Bool as Bool,
Complex as Complex,
Complex64 as Complex64,
Complex128 as Complex128,
Float as Float,
Float16 as Float16,
Float32 as Float32,
Float64 as Float64,
get_array_name_format as get_array_name_format,
Inexact as Inexact,
Int as Int,
Int8 as Int8,
Int16 as Int16,
Int32 as Int32,
Int64 as Int64,
Integer as Integer,
Num as Num,
set_array_name_format as set_array_name_format,
Shaped as Shaped,
UInt as UInt,
UInt8 as UInt8,
UInt16 as UInt16,
UInt32 as UInt32,
UInt64 as UInt64,
)
from .decorator import jaxtyped
from .import_hook import install_import_hook
from .pytree_type import PyTree
from .decorator import jaxtyped as jaxtyped
from .import_hook import install_import_hook as install_import_hook
__version__ = "0.0.2"
if typing.TYPE_CHECKING:
# Set up to deliberately confuse a static type checker.
import typing_extensions
PyTree: typing_extensions.TypeAlias = getattr(typing, "foo" + "bar")
# What's going on with this madness?
#
# At static-type-checking-time, we want `PyTree` to be a type for which both
# `PyTree` and `PyTree[Foo]` are equivalent to `Any`.
# (The intention is that `PyTree` be a runtime-only type; there's no real way to
# do more with static type checkers.)
#
# Unfortunately, this isn't possible: `Any` isn't subscriptable. And there's no
# equivalent way we can fake this using typing annotations. (In some sense the
# closest thing would be a `Protocol[T]` with no methods, but that's actually the
# opposite of what we want: that ends up allowing nothing at all.)
#
# The good news for us is that static type checkers have an internal escape hatch.
# If they can't figure out what a type is, then they just give up and allow
# anything. (I believe this is sometimes called `Unknown`.) Thus, this odd-looking
# annotation, which static type checkers aren't smart enough to resolve.
elif has_jax:
from .pytree_type import PyTree as PyTree # noqa: F401
del has_jax
__version__ = "0.2.15"
+437 -150
View File
@@ -17,11 +17,24 @@
# IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN
# CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
import enum
import functools as ft
from typing import Any, Dict, List, NoReturn, Optional, Tuple, Union
from typing_extensions import Literal
import sys
import types
import typing
from typing import (
Any,
Dict,
List,
Literal,
NoReturn,
Optional,
Tuple,
TYPE_CHECKING,
Union,
)
import jax.numpy as jnp
import numpy as np
from .decorator import storage
@@ -40,10 +53,17 @@ def set_array_name_format(value):
_any_dtype = object()
_anonymous_dim = object()
_anonymous_variadic_dim = object()
class _DimType(enum.Enum):
named = enum.auto()
fixed = enum.auto()
symbolic = enum.auto()
class _NamedDim:
def __init__(self, name, broadcastable):
self.name = name
@@ -62,21 +82,28 @@ class _FixedDim:
self.broadcastable = broadcastable
class _SymbolicDim:
def __init__(self, expr, broadcastable):
self.expr = expr
self.broadcastable = broadcastable
_AbstractDimOrVariadicDim = Union[
Literal[_anonymous_dim],
Literal[_anonymous_variadic_dim],
_NamedDim,
_NamedVariadicDim,
_FixedDim,
_SymbolicDim,
]
_AbstractDim = Union[Literal[_anonymous_dim], _NamedDim, _FixedDim]
_AbstractDim = Union[Literal[_anonymous_dim], _NamedDim, _FixedDim, _SymbolicDim]
def _check_dims(
cls_dims: List[_AbstractDim],
obj_shape: Tuple[int],
memo: Dict[str, Union[int, Tuple[int]]],
):
single_memo: Dict[str, int],
) -> bool:
assert len(cls_dims) == len(obj_shape)
for cls_dim, obj_size in zip(cls_dims, obj_shape):
if cls_dim is _anonymous_dim:
@@ -86,12 +113,24 @@ def _check_dims(
elif type(cls_dim) is _FixedDim:
if cls_dim.size != obj_size:
return False
elif type(cls_dim) is _SymbolicDim:
try:
eval_size = eval(cls_dim.expr, single_memo)
except NameError as e:
raise NameError(
f"Cannot process symbolic dimension '{cls_dim.expr}' as some "
"dimension names have not been processed. In practice you should "
"usually only use symbolic dimensions in annotations for return "
"types, referring only to dimensions annotated for arguments."
) from e
if eval_size != obj_size:
return False
else:
assert type(cls_dim) is _NamedDim
try:
cls_size = memo[cls_dim.name]
cls_size = single_memo[cls_dim.name]
except KeyError:
memo[cls_dim.name] = obj_size
single_memo[cls_dim.name] = obj_size
else:
if cls_size != obj_size:
return False
@@ -100,36 +139,67 @@ def _check_dims(
class _MetaAbstractArray(type):
def __instancecheck__(cls, obj):
if not isinstance(obj, jnp.ndarray):
if not isinstance(obj, cls.array_type):
return False
if cls.dtypes is not _any_dtype and obj.dtype not in cls.dtypes:
if hasattr(obj.dtype, "type") and hasattr(obj.dtype.type, "__name__"):
# JAX, numpy
dtype = obj.dtype.type.__name__
elif hasattr(obj.dtype, "as_numpy_dtype"):
# TensorFlow
dtype = obj.dtype.as_numpy_dtype.__name__
else:
# PyTorch
repr_dtype = repr(obj.dtype).split(".")
if len(repr_dtype) == 2 and repr_dtype[0] == "torch":
dtype = repr_dtype[1]
else:
raise RuntimeError(
"Unrecognised array/tensor type to extract dtype from"
)
if cls.dtypes is not _any_dtype and dtype not in cls.dtypes:
return False
if len(storage.memo_stack) == 0:
no_temp_memo = hasattr(storage, "memo_stack") and len(storage.memo_stack) != 0
if no_temp_memo:
single_memo, variadic_memo, variadic_broadcast_memo = storage.memo_stack[-1]
# Make a copy so we don't mutate the original memo during the shape check.
single_memo = single_memo.copy()
variadic_memo = variadic_memo.copy()
variadic_broadcast_memo = variadic_broadcast_memo.copy()
else:
# `isinstance` happening outside any @jaxtyped decorators, e.g. at the
# global scope. In this case just create a temporary memo, since we're not
# going to be comparing against any stored values anyway.
memo = {}
temp_memo = True
else:
# Make a copy so we don't mutate the original memo during the shape check.
memo = storage.memo_stack[-1].copy()
temp_memo = False
single_memo = {}
variadic_memo = {}
variadic_broadcast_memo = {}
if cls._check_shape(obj, memo):
if cls._check_shape(obj, single_memo, variadic_memo, variadic_broadcast_memo):
# We update the memo every time we successfully pass a shape check
if not temp_memo:
storage.memo_stack[-1] = memo
if no_temp_memo:
storage.memo_stack[-1] = (
single_memo,
variadic_memo,
variadic_broadcast_memo,
)
return True
else:
return False
def _check_shape(cls, obj, memo):
def _check_shape(
cls,
obj,
single_memo: Dict[str, int],
variadic_memo: Dict[str, Tuple[int, ...]],
variadic_broadcast_memo: Dict[str, List[Tuple[int, ...]]],
):
if cls.index_variadic is None:
if obj.ndim != len(cls.dims):
return False
return _check_dims(cls.dims, obj.shape, memo)
return _check_dims(cls.dims, obj.shape, single_memo)
else:
if obj.ndim < len(cls.dims) - 1:
return False
@@ -137,179 +207,396 @@ class _MetaAbstractArray(type):
j = -(len(cls.dims) - i - 1)
if j == 0:
j = None
if not _check_dims(cls.dims[:i], obj.shape[:i], memo):
if not _check_dims(cls.dims[:i], obj.shape[:i], single_memo):
return False
if j is not None and not _check_dims(cls.dims[j:], obj.shape[j:], memo):
if j is not None and not _check_dims(
cls.dims[j:], obj.shape[j:], single_memo
):
return False
variadic_dim = cls.dims[i]
if variadic_dim is not _anonymous_variadic_dim:
if variadic_dim is _anonymous_variadic_dim:
return True
else:
assert type(variadic_dim) is _NamedVariadicDim
variadic_name = variadic_dim.name
try:
variadic_shape = memo[variadic_name]
if variadic_dim.broadcastable:
variadic_shapes = variadic_broadcast_memo[variadic_name]
else:
variadic_shape = variadic_memo[variadic_name]
except KeyError:
memo[variadic_name] = obj.shape[i:j]
if variadic_dim.broadcastable:
variadic_broadcast_memo[variadic_name] = [obj.shape[i:j]]
else:
variadic_memo[variadic_name] = obj.shape[i:j]
return True
else:
if variadic_dim.broadcastable:
new_variadic_shape = []
obj_shape = obj.shape[i:j]
if len(variadic_shape) != len(obj_shape):
return False
for old_size, new_size in zip(variadic_shape, obj_shape):
if old_size == 1:
new_variadic_shape.append(new_size)
else:
if new_size != 1 and old_size != new_size:
return False
new_variadic_shape.append(old_size)
memo[variadic_name] = tuple(new_variadic_shape)
new_shape = obj.shape[i:j]
for existing_shape in variadic_shapes:
try:
np.broadcast_shapes(new_shape, existing_shape)
except ValueError:
return False
variadic_shapes.append(new_shape)
return True
else:
return variadic_shape == obj.shape[i:j]
return True
assert False
@ft.lru_cache(maxsize=None)
def _make_metaclass(base_metaclass):
class MetaAbstractArray(_MetaAbstractArray, base_metaclass):
pass
return MetaAbstractArray
def _check_scalar(dtype, dtypes, dims):
if len(dims) != 0:
return dims == (_anonymous_variadic_dim,)
return (_any_dtype is dtypes) or any(d.startswith(dtype) for d in dtypes)
class AbstractArray(metaclass=_MetaAbstractArray):
dtypes: List[jnp.dtype]
array_type: Any
dtypes: List[str]
dims: List[_AbstractDimOrVariadicDim]
index_variadic: Optional[int]
_not_made = object()
_union_types = [typing.Union]
if sys.version_info >= (3, 10):
_union_types.append(types.UnionType)
@ft.lru_cache(maxsize=None)
def _make_array(array_type, dim_str, dtypes, name):
if not isinstance(dim_str, str):
raise ValueError(
"Shape specification must be a string. Axes should be separated with "
"spaces."
)
dims = []
index_variadic = None
for index, elem in enumerate(dim_str.split()):
if "," in elem and "(" not in elem:
# Common mistake.
# Disable in the case that there's brackets to allow for function calls,
# e.g. `min(foo,bar)`, in symbolic dimensions.
raise ValueError("Dimensions should be separated with spaces, not commas")
if elem.endswith("#"):
raise ValueError(
"As of jaxtyping v0.1.0, broadcastable dimensions are now denoted "
"with a # at the start, rather than at the end"
)
if "..." in elem:
if elem != "...":
raise ValueError(
"Anonymous multiple dimension '...' must be used on its own; "
f"got {elem}"
)
broadcastable = False
variadic = True
anonymous = True
dim_type = _DimType.named
else:
broadcastable = False
variadic = False
anonymous = False
while True:
if len(elem) == 0:
# This branch needed as just `_` is valid
break
first_char = elem[0]
if first_char == "#":
if broadcastable:
raise ValueError(
"Do not use # twice to denote broadcastability, e.g. "
"`##foo` is not allowed"
)
broadcastable = True
elem = elem[1:]
elif first_char == "*":
if variadic:
raise ValueError(
"Do not use * twice to denote accepting multiple "
"dimensions, e.g. `**foo` is not allowed"
)
variadic = True
elem = elem[1:]
elif first_char == "_":
if anonymous:
raise ValueError(
"Do not use _ twice to denote anonymity, e.g. `__foo` "
"is not allowed"
)
anonymous = True
elem = elem[1:]
# Allow e.g. `foo=4` as an alternate syntax for just `4`, so that one
# can write e.g. `Float[Array, "rows=3 cols=4"]`
elif elem.count("=") == 1:
_, elem = elem.split("=")
else:
break
if len(elem) == 0 or elem.isidentifier():
dim_type = _DimType.named
else:
try:
elem = int(elem)
except ValueError:
dim_type = _DimType.symbolic
else:
dim_type = _DimType.fixed
if variadic:
if index_variadic is not None:
raise ValueError(
"Cannot use multiple-dimension specifiers (`*name` or `...`) "
"more than once"
)
index_variadic = index
if dim_type is _DimType.fixed:
if variadic:
raise ValueError(
"Cannot have a fixed axis bind to multiple dimensions, e.g. "
"`*4` is not allowed"
)
if anonymous:
raise ValueError(
"Cannot have a fixed axis be anonymous, e.g. `_4` is not " "allowed"
)
elem = _FixedDim(elem, broadcastable)
elif dim_type is _DimType.named:
if anonymous:
if broadcastable:
raise ValueError(
"Cannot have a dimension be both anonymous and "
"broadcastable, e.g. `#_` is not allowed"
)
if variadic:
elem = _anonymous_variadic_dim
else:
elem = _anonymous_dim
else:
if variadic:
elem = _NamedVariadicDim(elem, broadcastable)
else:
elem = _NamedDim(elem, broadcastable)
else:
assert dim_type is _DimType.symbolic
if anonymous:
raise ValueError(
"Cannot have a symbolic dimension be anonymous, e.g. "
"`_foo+bar` is not allowed"
)
if variadic:
raise ValueError(
"Cannot have symbolic multiple-dimensions, e.g. "
"`*foo+bar` is not allowed"
)
elem = compile(elem, "<string>", "eval")
elem = _SymbolicDim(elem, broadcastable)
dims.append(elem)
dims = tuple(dims)
# Allow Python built-in numeric types.
# TODO: do something more generic than this? Should we _make all types
# that have `shape` and `dtype` attributes or something?
if array_type is bool:
if _check_scalar("bool", dtypes, dims):
return array_type
else:
return _not_made
elif array_type is int:
if _check_scalar("int", dtypes, dims):
return array_type
else:
return _not_made
elif array_type is float:
if _check_scalar("float", dtypes, dims):
return array_type
else:
return _not_made
elif array_type is complex:
if _check_scalar("complex", dtypes, dims):
return array_type
else:
return _not_made
try:
type_str = array_type.__name__
except AttributeError:
type_str = repr(array_type)
if _array_name_format == "dtype_and_shape":
name = f"{name}[{type_str}, '{dim_str}']"
elif _array_name_format == "array":
name = type_str
else:
raise ValueError(f"array_name_format {_array_name_format} not recognised")
metaclass = _make_metaclass(type(array_type))
out = metaclass(
name,
(array_type, AbstractArray),
dict(
array_type=array_type,
dtypes=dtypes,
dims=dims,
index_variadic=index_variadic,
),
)
if getattr(typing, "GENERATING_DOCUMENTATION", False):
out.__module__ = "builtins"
else:
out.__module__ = "jaxtyping"
return out
class _MetaAbstractDtype(type):
def __instancecheck__(cls, obj: Any) -> NoReturn:
raise RuntimeError(
f"Do not use `isinstance(x, jaxtyping.{cls.__name__}`. If you want to "
f"Do not use `isinstance(x, jaxtyping.{cls.__name__})`. If you want to "
"check just the dtype of an array, then use "
f'`jaxtyping.{cls.__name__}["..."]`.'
f'`jaxtyping.{cls.__name__}[jnp.ndarray, "..."]`.'
)
@ft.lru_cache(maxsize=None)
def __getitem__(cls, dim_str: str) -> _MetaAbstractArray:
if not isinstance(dim_str, str):
def __getitem__(cls, item: Tuple[Any, str]):
if not isinstance(item, tuple) or len(item) != 2:
raise ValueError(
"Shape specification must be a string. Axes should be separated with spaces."
"As of jaxtyping v0.2.0, type annotations must now include an explicit "
"array type. For example `jaxtyping.Float32[jnp.ndarray, 'foo bar']`."
)
dims = []
index_variadic = None
for index, elem in enumerate(dim_str.split()):
if "," in elem:
# Common mistake
raise ValueError(
"Dimensions should be separated with spaces, not commas"
)
broadcastable = False
if elem.endswith("#"):
broadcastable = True
elem = elem[:-1]
try:
elem = int(elem)
except ValueError:
if elem == "_":
elem = _anonymous_dim
elif elem == "...":
if index_variadic is not None:
raise ValueError("Cannot have multiple variadic dimensions")
index_variadic = index
elem = _anonymous_variadic_dim
elif elem[0] == "*":
if index_variadic is not None:
raise ValueError("Cannot have multiple variadic dimensions")
index_variadic = index
elem = _NamedVariadicDim(elem[1:], broadcastable)
else:
elem = _NamedDim(elem, broadcastable)
else:
elem = _FixedDim(elem, broadcastable)
dims.append(elem)
if _array_name_format == "dtype_and_shape":
name = f"{cls.__name__}['{dim_str}']"
elif _array_name_format == "array":
name = "Array"
array_type, dim_str = item
del item
if typing.get_origin(array_type) in _union_types:
out = [
_make_array(x, dim_str, cls.dtypes, cls.__name__)
for x in typing.get_args(array_type)
]
out = tuple(x for x in out if x is not _not_made)
out = Union[out]
else:
raise ValueError(f"array_name_format {_array_name_format} not recognised")
return _MetaAbstractArray(
name,
(AbstractArray,),
dict(dtypes=cls.dtypes, dims=dims, index_variadic=index_variadic),
)
out = _make_array(array_type, dim_str, cls.dtypes, cls.__name__)
if out is _not_made:
raise ValueError("Invalid jaxtyping type annotation.")
return out
class AbstractDtype(metaclass=_MetaAbstractDtype):
dtypes: Union[str, List[str], Literal[_any_dtype]]
dtypes: Union[Literal[_any_dtype], List[str]]
def __init__(self, *args, **kwargs):
raise RuntimeError(
"AbstractDtype cannot be instantiated. Perhaps you wrote e.g. "
'`f32("shape")` when you mean `f32["shape"]`?'
'`Float32("shape")` when you mean `Float32[jnp.ndarray, "shape"]`?'
)
def __init_subclass__(cls, **kwargs):
super().__init_subclass__(**kwargs)
dtypes = cls.dtypes
if dtypes is not _any_dtype:
if not isinstance(dtypes, list):
dtypes = [dtypes]
dtypes = [jnp.dtype(d) for d in dtypes]
dtypes: Union[Literal[_any_dtype], str, List[str]] = cls.dtypes
if isinstance(dtypes, str):
dtypes = (dtypes,)
elif dtypes is not _any_dtype:
dtypes = tuple(dtypes)
cls.dtypes = dtypes
_bool = "bool"
_uint8 = "uint8"
_uint16 = "uint16"
_uint32 = "uint32"
_uint64 = "uint64"
_int8 = "int8"
_int16 = "int16"
_int32 = "int32"
_int64 = "int64"
_bfloat16 = "bfloat16"
_float16 = "float16"
_float32 = "float32"
_float64 = "float64"
_complex64 = "complex64"
_complex128 = "complex128"
if TYPE_CHECKING:
# Note that `from typing_extensions import Annotated; ... = Annotated`
# does not work with static type checkers. `Annotated` is a typeform rather
# than a type, meaning it cannot be assigned.
from typing_extensions import (
Annotated as BFloat16,
Annotated as Bool,
Annotated as Complex,
Annotated as Complex64,
Annotated as Complex128,
Annotated as Float,
Annotated as Float16,
Annotated as Float32,
Annotated as Float64,
Annotated as Inexact,
Annotated as Int,
Annotated as Int8,
Annotated as Int16,
Annotated as Int32,
Annotated as Int64,
Annotated as Integer,
Annotated as Num,
Annotated as Shaped,
Annotated as UInt,
Annotated as UInt8,
Annotated as UInt16,
Annotated as UInt32,
Annotated as UInt64,
)
else:
_bool = "bool"
_bool_ = "bool_"
_uint8 = "uint8"
_uint16 = "uint16"
_uint32 = "uint32"
_uint64 = "uint64"
_int8 = "int8"
_int16 = "int16"
_int32 = "int32"
_int64 = "int64"
_bfloat16 = "bfloat16"
_float16 = "float16"
_float32 = "float32"
_float64 = "float64"
_complex64 = "complex64"
_complex128 = "complex128"
def _make_dtype(_dtypes, name):
class _Cls(AbstractDtype):
dtypes = _dtypes
def _make_dtype(_dtypes, name):
class _Cls(AbstractDtype):
dtypes = _dtypes
_Cls.__name__ = name
_Cls.__qualname__ = name
if getattr(typing, "GENERATING_DOCUMENTATION", False):
_Cls.__module__ = "builtins"
else:
_Cls.__module__ = "jaxtyping"
return _Cls
_Cls.__name__ = name
_Cls.__qualname__ = name
return _Cls
UInt8 = _make_dtype(_uint8, "UInt8")
UInt16 = _make_dtype(_uint16, "UInt16")
UInt32 = _make_dtype(_uint32, "UInt32")
UInt64 = _make_dtype(_uint64, "UInt64")
Int8 = _make_dtype(_int8, "Int8")
Int16 = _make_dtype(_int16, "Int16")
Int32 = _make_dtype(_int32, "Int32")
Int64 = _make_dtype(_int64, "Int64")
BFloat16 = _make_dtype(_bfloat16, "BFloat16")
Float16 = _make_dtype(_float16, "Float16")
Float32 = _make_dtype(_float32, "Float32")
Float64 = _make_dtype(_float64, "Float64")
Complex64 = _make_dtype(_complex64, "Complex64")
Complex128 = _make_dtype(_complex128, "Complex128")
bools = [_bool, _bool_]
uints = [_uint8, _uint16, _uint32, _uint64]
ints = [_int8, _int16, _int32, _int64]
floats = [_bfloat16, _float16, _float32, _float64]
complexes = [_complex64, _complex128]
b = _make_dtype(_bool, "b")
u8 = _make_dtype(_uint8, "u8")
u16 = _make_dtype(_uint16, "u16")
u32 = _make_dtype(_uint32, "u32")
u64 = _make_dtype(_uint64, "u64")
i8 = _make_dtype(_int8, "i8")
i16 = _make_dtype(_int16, "i16")
i32 = _make_dtype(_int32, "i32")
i64 = _make_dtype(_int64, "i64")
bf16 = _make_dtype(_bfloat16, "bf16")
f16 = _make_dtype(_float16, "f16")
f32 = _make_dtype(_float32, "f32")
f64 = _make_dtype(_float64, "f64")
c64 = _make_dtype(_complex64, "c64")
c128 = _make_dtype(_complex128, "c128")
# We match NumPy's type hierarachy in what types to provide. See the diagram at
# https://numpy.org/doc/stable/reference/arrays.scalars.html#scalars
uints = [_uint8, _uint16, _uint32, _uint64]
ints = [_int8, _int16, _int32, _int64]
floats = [_bfloat16, _float16, _float32, _float64]
complexes = [_complex64, _complex128]
Bool = _make_dtype(bools, "Bool")
UInt = _make_dtype(uints, "UInt")
Int = _make_dtype(ints, "Int")
Integer = _make_dtype(uints + ints, "Integer")
Float = _make_dtype(floats, "Float")
Complex = _make_dtype(complexes, "Complex")
Inexact = _make_dtype(floats + complexes, "Inexact")
Num = _make_dtype(uints + ints + floats + complexes, "Num")
# We match NumPy's type hierarachy in what types to provide. See the diagram at
# https://numpy.org/doc/stable/reference/arrays.scalars.html#scalars
#
# No attempt is made to match up against their character codes: all of the below are
# abstract base classes without NumPy chararacter codes.
u = _make_dtype(uints, "u")
i = _make_dtype(ints, "i")
t = _make_dtype(uints + ints, "t") # integer
f = _make_dtype(floats, "f")
c = _make_dtype(complexes, "c")
x = _make_dtype(floats + complexes, "x") # inexact
n = _make_dtype(uints + ints + floats + complexes, "n") # number
Array = _make_dtype(_any_dtype, "Array")
Shaped = _make_dtype(_any_dtype, "Shaped")
+72 -10
View File
@@ -17,22 +17,84 @@
# IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN
# CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
import dataclasses
import functools as ft
import inspect
import threading
import types
import weakref
storage = threading.local()
storage.memo_stack = []
_jaxtyped_fns = weakref.WeakSet()
def jaxtyped(fn):
@ft.wraps(fn)
def wrapper(*args, **kwargs):
memo = {}
storage.memo_stack.append(memo)
try:
return fn(*args, **kwargs)
finally:
storage.memo_stack.pop()
if type(fn) is types.FunctionType and fn in _jaxtyped_fns:
return fn
elif inspect.isclass(fn): # allow decorators on class definitions
if dataclasses.is_dataclass(fn):
init = jaxtyped(fn.__init__)
fn.__init__ = init
return fn
else:
raise ValueError(
"jaxtyped may only be added as a class decorator to dataclasses"
)
# It'd be lovely if we could handle arbitrary descriptors, and not just the builtin
# ones. Unfortunately that means returning a class instance with a __get__ method,
# and that turns out to break loads of other things. See beartype issue #211 and
# jaxtyping issue #71.
elif isinstance(fn, classmethod):
return classmethod(jaxtyped(fn.__func__))
elif isinstance(fn, staticmethod):
return staticmethod(jaxtyped(fn.__func__))
elif isinstance(fn, property):
if fn.fget is None:
fget = None
else:
fget = jaxtyped(fn.fget)
if fn.fset is None:
fset = None
else:
fset = jaxtyped(fn.fset)
if fn.fdel is None:
fdel = None
else:
fdel = jaxtyped(fn.fdel)
return property(fget=fget, fset=fset, fdel=fdel)
else:
return wrapper
@ft.wraps(fn)
def wrapped_fn(*args, **kwargs):
try:
memo_stack = storage.memo_stack
except AttributeError:
memo_stack = storage.memo_stack = []
memo_stack.append(({}, {}, {}))
try:
return fn(*args, **kwargs)
finally:
memo_stack.pop()
_jaxtyped_fns.add(wrapped_fn)
return wrapped_fn
def _jaxtyped_typechecker(typechecker):
# typechecker is expected to probably be either `typeguard.typechecked`, or
# `beartype.beartype`, or `None`.
if typechecker is None:
typechecker = lambda x: x
def _wrapper(kls):
assert inspect.isclass(kls)
if dataclasses.is_dataclass(kls):
init = jaxtyped(typechecker(kls.__init__))
kls.__init__ = init
return kls
return _wrapper
+87 -41
View File
@@ -31,30 +31,32 @@
#
# Permission is hereby granted, free of charge, to any person obtaining a copy of this
# software and associated documentation files (the "Software"), to deal in the Software
# without restriction, including without limitation the rights to use, copy, modify, merge,
# publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons
# to whom the Software is furnished to do so, subject to the following conditions:
# without restriction, including without limitation the rights to use, copy, modify,
# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to
# permit persons to whom the Software is furnished to do so, subject to the following
# conditions:
#
# The above copyright notice and this permission notice shall be included in all copies or
# substantial portions of the Software.
# The above copyright notice and this permission notice shall be included in all copies
# or substantial portions of the Software.
#
# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED,
# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR
# PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE
# FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR
# OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER
# DEALINGS IN THE SOFTWARE.
# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A
# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT
# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF
# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE
# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
#
# ---------
import ast
import functools as ft
import sys
from importlib.abc import MetaPathFinder
from importlib.machinery import SourceFileLoader
from importlib.util import cache_from_source, decode_source
from inspect import isclass
from typing import Iterable, List, Optional, Tuple
from typing import Iterable, List, Optional, Tuple, Union
from unittest.mock import patch
@@ -63,8 +65,31 @@ def _call_with_frames_removed(f, *args, **kwargs):
return f(*args, **kwargs)
def _optimized_cache_from_source(path, debug_override=None):
return cache_from_source(path, debug_override, optimization="jaxtyping")
def _optimized_cache_from_source(typechecker_hash, /, path, debug_override=None):
# Version 2: change the position of the `@jaxtyped` decorator, so need a
# different name to avoid hitting old __pycache__.
# Version 3: now also annotating classes.
# Version 4: I'm honestly not sure, but bumping this fixed some kind of odd error.
# Maybe I changed something with hte classes part way through version 3?
# Version 5: Added support for string-based `typechecker` argument.
# Version 6: optimization tag now depends on `typechecker` argument, so that
# changing the typechecker will hit a different cache.
return cache_from_source(
path, debug_override, optimization=f"jaxtyping6{typechecker_hash}"
)
def _dot_lookup(*elements):
out = ast.Name(id=elements[0], ctx=ast.Load())
for element in elements[1:]:
out = ast.Attribute(out, element, ctx=ast.Load())
return out
def _str_lookup(string):
module = ast.parse(string)
(expr,) = module.body
return expr.value
class _JaxtypingTransformer(ast.NodeVisitor):
@@ -83,7 +108,7 @@ class _JaxtypingTransformer(ast.NodeVisitor):
else:
node.body.insert(i, ast.Import(names=[ast.alias("jaxtyping", None)]))
if self._typechecker is not None:
typechecker_module, _ = self._typechecker
typechecker_module, _ = self._typechecker.split(".", 1)
node.body.insert(
i, ast.Import(names=[ast.alias(typechecker_module, None)])
)
@@ -94,31 +119,37 @@ class _JaxtypingTransformer(ast.NodeVisitor):
self._parents.pop()
return node
def visit_ClassDef(self, node: ast.ClassDef):
func = _dot_lookup("jaxtyping", "decorator", "_jaxtyped_typechecker")
if self._typechecker is None:
args = [ast.Constant(None)]
else:
args = [_str_lookup(self._typechecker)]
node.decorator_list.insert(0, ast.Call(func, args, keywords=[]))
self._parents.append(node)
self.generic_visit(node)
self._parents.pop()
return node
def visit_FunctionDef(self, node: ast.FunctionDef):
has_annotated_args = any(arg for arg in node.args.args if arg.annotation)
has_annotated_return = bool(node.returns)
if has_annotated_args or has_annotated_return:
# Place at the start of the decorator list, in case a typechecking
# annotation has been manually applied; we need to be above that.
node.decorator_list.insert(
0,
ast.Attribute(
ast.Name(id="jaxtyping", ctx=ast.Load()), "jaxtyped", ast.Load()
),
)
# Place at the end of the decorator list, as otherwise we wrap e.g.
# `jax.custom_{jvp,vjp}` and lose the ability to `defjvp` etc.
#
# Note that the counter-argument here is that we'd like to place this
# at the start of the decorator list, in case a typechecking annotation
# has been manually applied, and we'd need to be above that. In this
# case we're just going to have to need to ask the user to remove their
# typechecking annotation (and let this decorator do it instead).
# It's more important we be compatible with normal JAX code.
node.decorator_list.append(_dot_lookup("jaxtyping", "jaxtyped"))
if self._typechecker is not None:
# Place at the end of the decorator list, as decorators
# frequently remove annotations from functions and we'd like to
# use those annotations.
typechecker_module, typechecker_function = self._typechecker
node.decorator_list.append(
ast.Attribute(
ast.Name(id=typechecker_module, ctx=ast.Load()),
typechecker_function,
ast.Load(),
)
)
node.decorator_list.append(_str_lookup(self._typechecker))
self._parents.append(node)
self.generic_visit(node)
self._parents.pop()
@@ -129,6 +160,7 @@ class _JaxtypingLoader(SourceFileLoader):
def __init__(self, *args, typechecker, **kwargs):
super().__init__(*args, **kwargs)
self._typechecker = typechecker
self._typechecker_hash = str(abs(hash(self._typechecker)))
def source_to_code(self, data, path, *, _optimize=-1):
source = decode_source(data)
@@ -148,10 +180,11 @@ class _JaxtypingLoader(SourceFileLoader):
)
def exec_module(self, module):
# Use a custom optimization marker the import lock should make this monkey patch safe
# Use a custom optimization marker - the import lock should make this monkey
# patch safe
with patch(
"importlib._bootstrap_external.cache_from_source",
_optimized_cache_from_source,
ft.partial(_optimized_cache_from_source, self._typechecker_hash),
):
return super().exec_module(module)
@@ -214,9 +247,10 @@ class ImportHookManager:
# Deliberately no default for `typechecker` so that folks must opt-in to not having
# a typechecker.
def install_import_hook(
modules: Iterable[str], typechecker: Optional[Tuple[str, str]]
modules: Iterable[str], typechecker: Optional[Union[str, Tuple[str, str]]]
) -> ImportHookManager:
"""Automatically apply `@jaxtyped`, and optionally a type checker, to all classes and functions.
"""Automatically apply `@jaxtyped`, and optionally a type checker, to all classes
and functions.
It will only be applied to modules loaded **after** this hook has been installed.
@@ -225,10 +259,18 @@ def install_import_hook(
- `packages`: the names of the modules in which to automatically apply `@jaxtyped`
and `@typechecked`.
- `typechecker`: the module and function of the typechecker you want to use, as a
2-tuple of strings. For example `typechecker=("typeguard", "typechecked")` or
`typechecker=("beartype", "beartype")`. You may pass `typechecker=None` if you
do not want to automatically decorate with a typechecker as well; e.g. if you
have a codebase that already has these decorators.
string. For example `typechecker="typeguard.typechecked"`, or
`typechecker="beartype.beartype"`. You may pass `typechecker=None` if you do not
want to automatically decorate with a typechecker as well.
If the function already has any decorators on it, then both the `@jaxtyped` and the
typechecker decorators will go at the bottom of the decorator list, e.g.
```python
@some_other_decorator
@jaxtyped
@beartype.beartype
def foo(...): ...
```
**Returns:**
@@ -240,8 +282,8 @@ def install_import_hook(
```python
# entry_point.py
from jaxtyped import install_import_hook
install_import_hook("main", ("beartype", "beartype"))
import main
with install_import_hook("main", ("beartype", "beartype"))
import main
... # do whatever you're doing
# main.py
@@ -257,6 +299,10 @@ def install_import_hook(
if isinstance(modules, str):
modules = [modules]
# Support old less-flexible API.
if isinstance(typechecker, tuple):
typechecker = ".".join(typechecker)
for i, finder in enumerate(sys.meta_path):
if (
isclass(finder)
+1
View File
@@ -0,0 +1 @@
+1 -1
View File
@@ -52,4 +52,4 @@ def pytest_configure(config):
)
raise RuntimeError(message.format(", ".join(already_imported_packages)))
install_import_hook(packages, typechecker.rsplit(".", 1))
install_import_hook(packages, typechecker)
+25 -6
View File
@@ -18,9 +18,10 @@
# CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
import functools as ft
import typing
from typing import Generic, TypeVar
import jax
import jax.tree_util as jtu
import typeguard
@@ -33,6 +34,7 @@ class _FakePyTree(Generic[_T]):
_FakePyTree.__name__ = "PyTree"
_FakePyTree.__qualname__ = "PyTree"
_FakePyTree.__module__ = "builtins"
# Can't do type("PyTree", (Generic[_T],), {}) because dynamic subclassing of typeforms
# isn't allowed.
# Can't do types.new_class("PyTree", (Generic[_T],), {}) because that has __module__
@@ -49,7 +51,20 @@ class _MetaPyTree(type):
@ft.lru_cache(maxsize=None)
def __getitem__(cls, item):
name = str(_FakePyTree[item])
return _MetaSubscriptPyTree(name, (), {"leaftype": item})
out = _MetaSubscriptPyTree(name, (), {"leaftype": item})
if getattr(typing, "GENERATING_DOCUMENTATION", False):
out.__module__ = "builtins"
else:
out.__module__ = "jaxtyping"
return out
try:
# new typeguard
_TypeCheckError = (TypeError, typeguard.TypeCheckError)
except AttributeError:
# old typeguard
_TypeCheckError = TypeError
class _MetaSubscriptPyTree(type):
@@ -70,16 +85,20 @@ class _MetaSubscriptPyTree(type):
def is_leaftype(x):
try:
accepts_leaftype(x)
except TypeError:
except _TypeCheckError:
return False
else:
return True
leaves = jax.tree_leaves(obj, is_leaf=is_leaftype)
leaves = jtu.tree_leaves(obj, is_leaf=is_leaftype)
return all(map(is_leaftype, leaves))
PyTree = _MetaPyTree("PyTree", (), {})
# Can't do `class PyTree(Generic[_T]): ...` because we need to override the
# instancecheck for PyTree[foo], but we subclassing
# instancecheck for PyTree[foo], but subclassing
# `type(Generic[int])`, i.e. `typing._GenericAlias` is disallowed.
PyTree = _MetaPyTree("PyTree", (), {})
if getattr(typing, "GENERATING_DOCUMENTATION", False):
PyTree.__module__ = "builtins"
else:
PyTree.__module__ = "jaxtyping"
+10
View File
@@ -0,0 +1,10 @@
[tool.ruff]
select = ["E", "F", "I001"]
ignore = ["E721", "E731", "F722"]
ignore-init-module-imports = true
[tool.ruff.isort]
combine-as-imports = true
lines-after-imports = 2
extra-standard-library = ["typing_extensions"]
order-by-type = false
+16 -4
View File
@@ -28,7 +28,8 @@ _here = pathlib.Path(__file__).resolve().parent
name = "jaxtyping"
# for simplicity we actually store the version in the __version__ attribute in the source
# for simplicity we actually store the version in the __version__ attribute in the
# source
with open(_here / name / "__init__.py") as f:
meta_match = re.search(r"^__version__ = ['\"]([^'\"]*)['\"]", f.read(), re.M)
if meta_match:
@@ -40,7 +41,10 @@ author = "Patrick Kidger"
author_email = "contact@kidger.site"
description = "Type annotations and runtime checking for shape and dtype of JAX arrays, and PyTrees."
description = (
"Type annotations and runtime checking for shape and dtype of JAX "
"arrays, and PyTrees."
)
with open(_here / "README.md", "r") as f:
readme = f.read()
@@ -59,11 +63,18 @@ classifiers = [
"Topic :: Scientific/Engineering :: Mathematics",
]
python_requires = "~=3.7"
python_requires = "~=3.8"
# We use typeguard internally (in a fairly minimal way), but it's not required that
# end users make the same choice.
install_requires = ["jax>=0.3.4", "typeguard>=2.13.3", "typing_extensions>=4.2.0"]
# For typing_extensions, we choose versions that match
# https://github.com/explosion/confection/blob/main/setup.cfg#L33 used in colab
install_requires = [
"numpy>=1.20.0",
"typeguard>=2.13.3",
"typing_extensions>=3.7.4.1",
]
entry_points = dict(pytest11=["jaxtyping = jaxtyping.pytest_plugin"])
@@ -85,4 +96,5 @@ setuptools.setup(
install_requires=install_requires,
entry_points=entry_points,
packages=[name],
include_package_data=True,
)
View File
+13 -5
View File
@@ -19,13 +19,24 @@
import random
import beartype
import jax.random as jr
import pytest
import typeguard
@pytest.fixture(params=[typeguard.typechecked, beartype.beartype])
try:
import beartype
except ImportError:
def skip(*args, **kwargs):
pytest.skip("Beartype not installed")
typecheck_params = [typeguard.typechecked, skip]
else:
typecheck_params = [typeguard.typechecked, beartype.beartype]
@pytest.fixture(params=typecheck_params)
def typecheck(request):
return request.param
@@ -37,6 +48,3 @@ def getkey():
return jr.PRNGKey(random.randint(0, 2**31 - 1))
return _getkey
ParamException = (TypeError, beartype.roar.BeartypeCallHintParamViolation)
+23 -3
View File
@@ -17,12 +17,32 @@
# IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN
# CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
import beartype
import equinox as eqx
import typeguard
ParamError = (TypeError, beartype.roar.BeartypeCallHintParamViolation)
ReturnError = (TypeError, beartype.roar.BeartypeCallHintReturnViolation)
ParamError = []
ReturnError = []
ParamError.append(TypeError) # old typeguard
ReturnError.append(TypeError) # old typeguard
try:
# new typeguard
ParamError.append(typeguard.TypeCheckError)
ReturnError.append(typeguard.TypeCheckError)
except AttributeError:
pass
try:
import beartype
except ImportError:
pass
else:
ParamError.append(beartype.roar.BeartypeCallHintParamViolation)
ReturnError.append(beartype.roar.BeartypeCallHintReturnViolation)
ParamError = tuple(ParamError)
ReturnError = tuple(ReturnError)
@eqx.filter_jit
+32 -3
View File
@@ -17,17 +17,46 @@
# IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN
# CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
import dataclasses
import equinox as eqx
import jax.numpy as jnp
import pytest
from helpers import ParamError
from jaxtyping import f32
from jaxtyping import Float32
from .helpers import ParamError
def g(x: f32[" b"]):
def g(x: Float32[jnp.ndarray, " b"]):
pass
g(jnp.array([1.0]))
with pytest.raises(ParamError):
g(jnp.array(1))
class M(eqx.Module):
foo: int
bar: Float32[jnp.ndarray, " a"]
M(1, jnp.array([1.0]))
with pytest.raises(ParamError):
M(1.0, jnp.array([1.0]))
with pytest.raises(ParamError):
M(1, jnp.array(1.0))
@dataclasses.dataclass
class D:
foo: int
bar: Float32[jnp.ndarray, " a"]
D(1, jnp.array([1.0]))
with pytest.raises(ParamError):
D(1.0, jnp.array([1.0]))
with pytest.raises(ParamError):
D(1, jnp.array(1.0))
+62
View File
@@ -0,0 +1,62 @@
# Copyright (c) 2022 Google LLC
#
# Permission is hereby granted, free of charge, to any person obtaining a copy of
# this software and associated documentation files (the "Software"), to deal in
# the Software without restriction, including without limitation the rights to
# use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of
# the Software, and to permit persons to whom the Software is furnished to do so,
# subject to the following conditions:
#
# The above copyright notice and this permission notice shall be included in all
# copies or substantial portions of the Software.
#
# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS
# FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR
# COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER
# IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN
# CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
import dataclasses
import equinox as eqx
import jax.numpy as jnp
import pytest
from jaxtyping import Float32
from .helpers import ParamError
def g(x: Float32[jnp.ndarray, " b"]):
pass
g(jnp.array([1.0]))
with pytest.raises(ParamError):
g(jnp.array(1))
class M(eqx.Module):
foo: int
bar: Float32[jnp.ndarray, " a"]
M(1, jnp.array([1.0]))
with pytest.raises(ParamError):
M(1.0, jnp.array([1.0]))
with pytest.raises(ParamError):
M(1, jnp.array(1.0))
@dataclasses.dataclass
class D:
foo: int
bar: Float32[jnp.ndarray, " a"]
D(1, jnp.array([1.0]))
with pytest.raises(ParamError):
D(1.0, jnp.array([1.0]))
with pytest.raises(ParamError):
D(1, jnp.array(1.0))
+62
View File
@@ -0,0 +1,62 @@
# Copyright (c) 2022 Google LLC
#
# Permission is hereby granted, free of charge, to any person obtaining a copy of
# this software and associated documentation files (the "Software"), to deal in
# the Software without restriction, including without limitation the rights to
# use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of
# the Software, and to permit persons to whom the Software is furnished to do so,
# subject to the following conditions:
#
# The above copyright notice and this permission notice shall be included in all
# copies or substantial portions of the Software.
#
# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS
# FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR
# COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER
# IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN
# CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
import dataclasses
import equinox as eqx
import jax.numpy as jnp
import pytest
from jaxtyping import Float32
from .helpers import ParamError
def g(x: Float32[jnp.ndarray, " b"]):
pass
g(jnp.array([1.0]))
with pytest.raises(ParamError):
g(jnp.array(1))
class M(eqx.Module):
foo: int
bar: Float32[jnp.ndarray, " a"]
M(1, jnp.array([1.0]))
with pytest.raises(ParamError):
M(1.0, jnp.array([1.0]))
with pytest.raises(ParamError):
M(1, jnp.array(1.0))
@dataclasses.dataclass
class D:
foo: int
bar: Float32[jnp.ndarray, " a"]
D(1, jnp.array([1.0]))
with pytest.raises(ParamError):
D(1.0, jnp.array([1.0]))
with pytest.raises(ParamError):
D(1, jnp.array(1.0))
+32 -3
View File
@@ -17,17 +17,46 @@
# IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN
# CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
import dataclasses
import equinox as eqx
import jax.numpy as jnp
import pytest
from helpers import ParamError
from jaxtyping import f32
from jaxtyping import Float32
from .helpers import ParamError
def g(x: f32[" b"]):
def g(x: Float32[jnp.ndarray, " b"]):
pass
g(jnp.array([1.0]))
with pytest.raises(ParamError):
g(jnp.array(1))
class M(eqx.Module):
foo: int
bar: Float32[jnp.ndarray, " a"]
M(1, jnp.array([1.0]))
with pytest.raises(ParamError):
M(1.0, jnp.array([1.0]))
with pytest.raises(ParamError):
M(1, jnp.array(1.0))
@dataclasses.dataclass
class D:
foo: int
bar: Float32[jnp.ndarray, " a"]
D(1, jnp.array([1.0]))
with pytest.raises(ParamError):
D(1.0, jnp.array([1.0]))
with pytest.raises(ParamError):
D(1, jnp.array(1.0))
@@ -17,4 +17,4 @@
# IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN
# CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
from . import another_file
from . import another_file # noqa: F401
@@ -17,17 +17,31 @@
# IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN
# CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
import equinox as eqx
import jax.numpy as jnp
import pytest
from helpers import ParamError
from jaxtyping import f32
from jaxtyping import Float32
from ..helpers import ParamError
def g(x: f32[" b"]):
def g(x: Float32[jnp.ndarray, " b"]):
pass
g(jnp.array([1.0]))
with pytest.raises(ParamError):
g(jnp.array(1))
class M(eqx.Module):
foo: int
bar: Float32[jnp.ndarray, " a"]
M(1, jnp.array([1.0]))
with pytest.raises(ParamError):
M(1.0, jnp.array([1.0]))
with pytest.raises(ParamError):
M(1, jnp.array(1.0))
+33 -3
View File
@@ -17,17 +17,47 @@
# IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN
# CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
import jax.numpy as jnp
import pytest
from helpers import ParamError
from jaxtyping import f32
from jaxtyping import Float32
from .helpers import ParamError
def g(x: f32[" b"]):
def g(x: Float32[jnp.ndarray, " b"]):
pass
g(jnp.array([1.0]))
with pytest.raises(ParamError):
g(jnp.array(1))
# Typeguard 3.0 no longer supports this.
#
# class M(eqx.Module):
# foo: int
# bar: Float32[jnp.ndarray, " a"]
#
#
# M(1, jnp.array([1.0]))
# with pytest.raises(ParamError):
# M(1.0, jnp.array([1.0]))
# with pytest.raises(ParamError):
# M(1, jnp.array(1.0))
#
#
#
# @dataclasses.dataclass
# class D:
# foo: int
# bar: Float32[jnp.ndarray, " a"]
#
#
# D(1, jnp.array([1.0]))
# with pytest.raises(ParamError):
# D(1.0, jnp.array([1.0]))
# with pytest.raises(ParamError):
# D(1, jnp.array(1.0))
+63
View File
@@ -0,0 +1,63 @@
# Copyright (c) 2022 Google LLC
#
# Permission is hereby granted, free of charge, to any person obtaining a copy of
# this software and associated documentation files (the "Software"), to deal in
# the Software without restriction, including without limitation the rights to
# use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of
# the Software, and to permit persons to whom the Software is furnished to do so,
# subject to the following conditions:
#
# The above copyright notice and this permission notice shall be included in all
# copies or substantial portions of the Software.
#
# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS
# FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR
# COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER
# IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN
# CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
import jax.numpy as jnp
import pytest
from jaxtyping import Float32
from .helpers import ParamError
def g(x: Float32[jnp.ndarray, " b"]):
pass
g(jnp.array([1.0]))
with pytest.raises(ParamError):
g(jnp.array(1))
# Typeguard 3.0 no longer supports this.
#
# class M(eqx.Module):
# foo: int
# bar: Float32[jnp.ndarray, " a"]
#
#
# M(1, jnp.array([1.0]))
# with pytest.raises(ParamError):
# M(1.0, jnp.array([1.0]))
# with pytest.raises(ParamError):
# M(1, jnp.array(1.0))
#
#
#
# @dataclasses.dataclass
# class D:
# foo: int
# bar: Float32[jnp.ndarray, " a"]
#
#
# D(1, jnp.array([1.0]))
# with pytest.raises(ParamError):
# D(1.0, jnp.array([1.0]))
# with pytest.raises(ParamError):
# D(1, jnp.array(1.0))
+1
View File
@@ -2,3 +2,4 @@ equinox>=0.5.3
pytest>=7.0.1
beartype>=0.10.4
typeguard>=2.13.3
cloudpickle>=2.2.1
+223 -40
View File
@@ -17,34 +17,72 @@
# IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN
# CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
import sys
from typing import get_args, get_origin, Union
import jax.numpy as jnp
import jax.random as jr
import numpy as np
import pytest
from helpers import ParamError, ReturnError
import torch
from jaxtyping import Array, f, f32, jaxtyped
from jaxtyping import AbstractDtype, Array, ArrayLike, Float, Float32, jaxtyped, Shaped
from .helpers import ParamError, ReturnError
def test_basic(typecheck):
@jaxtyped
@typecheck
def g(x: Array["..."]):
def g(x: Shaped[Array, "..."]):
pass
g(jnp.array(1.0))
def test_dtypes():
from jaxtyping import ( # noqa: F401
Array,
BFloat16,
Bool,
Complex,
Complex64,
Complex128,
Float,
Float16,
Float32,
Float64,
Inexact,
Int,
Int8,
Int16,
Int32,
Int64,
Num,
Shaped,
UInt,
UInt8,
UInt16,
UInt32,
UInt64,
)
for key, val in locals().items():
if issubclass(val, AbstractDtype):
assert key == val.__name__
def test_return(typecheck, getkey):
@jaxtyped
@typecheck
def g(x: f["b c"]) -> f["c b"]:
def g(x: Float[Array, "b c"]) -> Float[Array, "c b"]:
return jnp.transpose(x)
g(jr.normal(getkey(), (3, 4)))
@jaxtyped
@typecheck
def h(x: f["b c"]) -> f["b c"]:
def h(x: Float[Array, "b c"]) -> Float[Array, "b c"]:
return jnp.transpose(x)
with pytest.raises(ReturnError):
@@ -54,7 +92,7 @@ def test_return(typecheck, getkey):
def test_two_args(typecheck, getkey):
@jaxtyped
@typecheck
def g(x: Array["b c"], y: Array["c d"]):
def g(x: Shaped[Array, "b c"], y: Shaped[Array, "c d"]):
return x @ y
g(jr.normal(getkey(), (3, 4)), jr.normal(getkey(), (4, 5)))
@@ -63,7 +101,7 @@ def test_two_args(typecheck, getkey):
@jaxtyped
@typecheck
def h(x: Array["b c"], y: Array["c d"]) -> Array["b d"]:
def h(x: Shaped[Array, "b c"], y: Shaped[Array, "c d"]) -> Shaped[Array, "b d"]:
return x @ y
h(jr.normal(getkey(), (3, 4)), jr.normal(getkey(), (4, 5)))
@@ -74,7 +112,7 @@ def test_two_args(typecheck, getkey):
def test_any_dtype(typecheck, getkey):
@jaxtyped
@typecheck
def g(x: Array["a b"]) -> Array["a b"]:
def g(x: Shaped[Array, "a b"]) -> Shaped[Array, "a b"]:
return x
g(jr.normal(getkey(), (3, 4)))
@@ -91,12 +129,12 @@ def test_any_dtype(typecheck, getkey):
def test_nested_jaxtyped(typecheck, getkey):
@jaxtyped
@typecheck
def g(x: f32["b c"], transpose: bool) -> f32["c b"]:
def g(x: Float32[Array, "b c"], transpose: bool) -> Float32[Array, "c b"]:
return h(x, transpose)
@jaxtyped
@typecheck
def h(x: f32["c b"], transpose: bool) -> f32["b c"]:
def h(x: Float32[Array, "c b"], transpose: bool) -> Float32[Array, "b c"]:
if transpose:
return jnp.transpose(x)
else:
@@ -112,11 +150,11 @@ def test_nested_jaxtyped(typecheck, getkey):
def test_nested_nojaxtyped(typecheck, getkey):
@jaxtyped
@typecheck
def g(x: f32["b c"]):
def g(x: Float32[Array, "b c"]):
return h(x)
@typecheck
def h(x: f32["c b"]):
def h(x: Float32[Array, "c b"]):
return x
with pytest.raises(ParamError):
@@ -126,14 +164,14 @@ def test_nested_nojaxtyped(typecheck, getkey):
def test_isinstance(typecheck, getkey):
@jaxtyped
@typecheck
def g(x: f32["b c"]) -> f32[" z"]:
def g(x: Float32[Array, "b c"]) -> Float32[Array, " z"]:
y = jnp.transpose(x)
assert isinstance(y, f32["c b"])
assert isinstance(y, Float32[Array, "c b"])
assert not isinstance(
y, f32["b z"]
y, Float32[Array, "b z"]
) # z left unbound as b!=c (unless x symmetric, which it isn't)
out = jr.normal(getkey(), (500,))
assert isinstance(out, f32["z"]) # z now bound
assert isinstance(out, Float32[Array, "z"]) # z now bound
return out
g(jr.normal(getkey(), (2, 3)))
@@ -142,7 +180,9 @@ def test_isinstance(typecheck, getkey):
def test_fixed(typecheck, getkey):
@jaxtyped
@typecheck
def g(x: f32["4 5 foo"], y: f32[" foo"]) -> f32["4 5"]:
def g(
x: Float32[Array, "4 5 foo"], y: Float32[Array, " foo"]
) -> Float32[Array, "4 5"]:
return x @ y
a = jr.normal(getkey(), (4, 5, 2))
@@ -157,7 +197,7 @@ def test_fixed(typecheck, getkey):
def test_anonymous(typecheck, getkey):
@jaxtyped
@typecheck
def g(x: f32["foo _"], y: f32[" _"]):
def g(x: Float32[Array, "foo _"], y: Float32[Array, " _"]):
pass
a = jr.normal(getkey(), (3, 4))
@@ -168,7 +208,11 @@ def test_anonymous(typecheck, getkey):
def test_named_variadic(typecheck, getkey):
@jaxtyped
@typecheck
def g(x: f32["*batch foo"], y: f32[" *batch"], z: f32[" foo"]):
def g(
x: Float32[Array, "*batch foo"],
y: Float32[Array, " *batch"],
z: Float32[Array, " foo"],
):
pass
c = jr.normal(getkey(), (5,))
@@ -188,7 +232,7 @@ def test_named_variadic(typecheck, getkey):
@jaxtyped
@typecheck
def h(x: f32[" foo *batch"], y: f32[" foo *batch bar"]):
def h(x: Float32[Array, " foo *batch"], y: Float32[Array, " foo *batch bar"]):
pass
a = jr.normal(getkey(), (4,))
@@ -204,7 +248,7 @@ def test_named_variadic(typecheck, getkey):
def test_anonymous_variadic(typecheck, getkey):
@jaxtyped
@typecheck
def g(x: f32["... foo"], y: f32[" foo"]):
def g(x: Float32[Array, "... foo"], y: Float32[Array, " foo"]):
pass
a1 = jr.normal(getkey(), (5,))
@@ -226,7 +270,7 @@ def test_anonymous_variadic(typecheck, getkey):
def test_broadcast_fixed(typecheck, getkey):
@jaxtyped
@typecheck
def g(x: f32["4#"]):
def g(x: Float32[Array, "#4"]):
pass
g(jr.normal(getkey(), (4,)))
@@ -239,7 +283,7 @@ def test_broadcast_fixed(typecheck, getkey):
def test_broadcast_named(typecheck, getkey):
@jaxtyped
@typecheck
def g(x: f32[" foo#"], y: f32[" foo#"]):
def g(x: Float32[Array, " #foo"], y: Float32[Array, " #foo"]):
pass
a = jr.normal(getkey(), (3,))
@@ -263,7 +307,7 @@ def test_broadcast_named(typecheck, getkey):
def test_broadcast_variadic_named(typecheck, getkey):
@jaxtyped
@typecheck
def g(x: f32[" *foo#"], y: f32[" *foo#"]):
def g(x: Float32[Array, " *#foo"], y: Float32[Array, " *#foo"]):
pass
a = jr.normal(getkey(), (3,))
@@ -282,12 +326,11 @@ def test_broadcast_variadic_named(typecheck, getkey):
g(b, b)
g(c, c)
g(d, d)
g(b, c)
with pytest.raises(ParamError):
g(a, b)
with pytest.raises(ParamError):
g(a, c)
with pytest.raises(ParamError):
g(b, c)
with pytest.raises(ParamError):
g(a, b)
with pytest.raises(ParamError):
@@ -295,26 +338,20 @@ def test_broadcast_variadic_named(typecheck, getkey):
g(a, j)
g(b, j)
with pytest.raises(ParamError):
g(c, j)
with pytest.raises(ParamError):
g(d, j)
with pytest.raises(ParamError):
g(b, k)
g(c, j)
g(d, j)
g(b, k)
g(c, k)
with pytest.raises(ParamError):
g(d, k)
with pytest.raises(ParamError):
g(c, l)
g(d, l)
with pytest.raises(ParamError):
g(a, m)
g(a, m)
g(c, m)
g(d, m)
with pytest.raises(ParamError):
g(a, n)
with pytest.raises(ParamError):
g(b, n)
g(a, n)
g(b, n)
with pytest.raises(ParamError):
g(c, n)
with pytest.raises(ParamError):
@@ -326,6 +363,152 @@ def test_broadcast_variadic_named(typecheck, getkey):
g(o, a)
def test_no_commas(typecheck, getkey):
def test_no_commas():
with pytest.raises(ValueError):
f32["foo, bar"]
Float32[Array, "foo, bar"]
def test_symbolic(typecheck, getkey):
@jaxtyped
@typecheck
def make_slice(x: Float32[Array, " dim"]) -> Float32[Array, " dim-1"]:
return x[1:]
@jaxtyped
@typecheck
def cat(x: Float32[Array, " dim"]) -> Float32[Array, " 2*dim"]:
return jnp.concatenate([x, x])
@jaxtyped
@typecheck
def bad_make_slice(x: Float32[Array, " dim"]) -> Float32[Array, " dim-1"]:
return x
@jaxtyped
@typecheck
def bad_cat(x: Float32[Array, " dim"]) -> Float32[Array, " 2*dim"]:
return jnp.concatenate([x, x, x])
x = jr.normal(getkey(), (5,))
assert make_slice(x).shape == (4,)
assert cat(x).shape == (10,)
y = jr.normal(getkey(), (3, 4))
with pytest.raises(ParamError):
make_slice(y)
with pytest.raises(ParamError):
cat(y)
with pytest.raises(ReturnError):
bad_make_slice(x)
with pytest.raises(ReturnError):
bad_cat(x)
def test_incomplete_symbolic(typecheck, getkey):
@jaxtyped
@typecheck
def foo(x: Float32[Array, " 2*dim"]):
pass
x = jr.normal(getkey(), (4,))
with pytest.raises(NameError):
foo(x)
def test_arraylike(typecheck, getkey):
floatlike1 = Float32[ArrayLike, ""]
floatlike2 = Float[ArrayLike, ""]
floatlike3 = Float32[ArrayLike, "4"]
assert get_origin(floatlike1) is Union
assert get_origin(floatlike2) is Union
assert get_origin(floatlike3) is Union
assert set(get_args(floatlike1)) == {
Float32[Array, ""],
Float32[np.ndarray, ""],
Float32[np.bool_, ""],
Float32[np.number, ""],
float,
}
assert set(get_args(floatlike2)) == {
Float[Array, ""],
Float[np.ndarray, ""],
Float[np.bool_, ""],
Float[np.number, ""],
float,
}
assert set(get_args(floatlike3)) == {
Float32[Array, "4"],
Float32[np.ndarray, "4"],
Float32[np.bool_, "4"],
Float32[np.number, "4"],
}
shaped1 = Shaped[ArrayLike, ""]
shaped2 = Shaped[ArrayLike, "4"]
assert get_origin(shaped1) is Union
assert get_origin(shaped2) is Union
assert set(get_args(shaped1)) == {
Shaped[Array, ""],
Shaped[np.ndarray, ""],
Shaped[np.bool_, ""],
Shaped[np.number, ""],
bool,
int,
float,
complex,
}
assert set(get_args(shaped2)) == {
Shaped[Array, "4"],
Shaped[np.ndarray, "4"],
Shaped[np.bool_, "4"],
Shaped[np.number, "4"],
}
def test_subclass():
assert issubclass(Float[Array, ""], Array)
assert issubclass(Float[np.ndarray, ""], np.ndarray)
assert issubclass(Float[torch.Tensor, ""], torch.Tensor)
def test_ignored_names():
x = Float[np.ndarray, "foo=4"]
assert isinstance(np.zeros(4), x)
assert not isinstance(np.zeros(5), x)
assert not isinstance(np.zeros((4, 5)), x)
y = Float[np.ndarray, "bar qux foo=bar+qux"]
assert isinstance(np.zeros((2, 3, 5)), y)
assert not isinstance(np.zeros((2, 3, 6)), y)
z = Float[np.ndarray, "bar #foo=bar"]
assert isinstance(np.zeros((3, 3)), z)
assert isinstance(np.zeros((3, 1)), z)
assert not isinstance(np.zeros((3, 4)), z)
# Weird but legal
w = Float[np.ndarray, "bar foo=#bar"]
assert isinstance(np.zeros((3, 3)), w)
assert isinstance(np.zeros((3, 1)), w)
assert not isinstance(np.zeros((3, 4)), w)
def test_symbolic_functions():
x = Float[np.ndarray, "foo bar min(foo,bar)"]
assert isinstance(np.zeros((2, 3, 2)), x)
assert isinstance(np.zeros((3, 2, 2)), x)
assert not isinstance(np.zeros((3, 2, 4)), x)
@pytest.mark.skipif(sys.version_info < (3, 10), reason="requires Python 3.10")
def test_py310_unions():
x = np.zeros(3)
y = Shaped[Array | np.ndarray, "_"]
assert isinstance(x, get_args(y))
+77
View File
@@ -0,0 +1,77 @@
import abc
from jaxtyping import jaxtyped
class M(metaclass=abc.ABCMeta):
@jaxtyped
def f(self):
...
@jaxtyped
@classmethod
def g1(cls):
return 3
@classmethod
@jaxtyped
def g2(cls):
return 4
@jaxtyped
@staticmethod
def h1():
return 3
@staticmethod
@jaxtyped
def h2():
return 4
@jaxtyped
@abc.abstractmethod
def i1(self):
...
@abc.abstractmethod
@jaxtyped
def i2(self):
...
class N:
@jaxtyped
@property
def j1(self):
return 3
@property
@jaxtyped
def j2(self):
return 4
def test_identity():
assert M.f is M.f
def test_classmethod():
assert M.g1() == 3
assert M.g2() == 4
def test_staticmethod():
assert M.h1() == 3
assert M.h2() == 4
# Check that the @jaxtyped decorator doesn't blat the __isabstractmethod__ of
# @abstractmethod
def test_abstractmethod():
assert M.i1.__isabstractmethod__
assert M.i2.__isabstractmethod__
def test_property():
assert N().j1 == 3
assert N().j2 == 4
+50 -14
View File
@@ -22,35 +22,71 @@ import pytest
from jaxtyping import install_import_hook
def test_import_hook_typeguard_old():
hook = install_import_hook(
"test.import_hook_tester_typeguard_old", ("typeguard", "typechecked")
)
with hook:
from . import import_hook_tester_typeguard_old # noqa: F401
def test_import_hook_typeguard():
hook = install_import_hook(
"import_hook_tester_typeguard", ("typeguard", "typechecked")
"test.import_hook_tester_typeguard", "typeguard.typechecked"
)
import import_hook_tester_typeguard # noqa: F401
with hook:
from . import import_hook_tester_typeguard # noqa: F401
hook.uninstall()
def test_import_hook_beartype_old():
try:
import beartype # noqa: F401
except ImportError:
pytest.skip("Beartype not installed")
else:
hook = install_import_hook(
"test.import_hook_tester_beartype_old", ("beartype", "beartype")
)
with hook:
from . import import_hook_tester_beartype_old # noqa: F401
def test_import_hook_beartype():
hook = install_import_hook("import_hook_tester_beartype", ("beartype", "beartype"))
import import_hook_tester_beartype # noqa: F401
try:
import beartype # noqa: F401
except ImportError:
pytest.skip("Beartype not installed")
else:
hook = install_import_hook(
"test.import_hook_tester_beartype", "beartype.beartype"
)
with hook:
from . import import_hook_tester_beartype # noqa: F401
hook.uninstall()
def test_import_hook_beartype_full():
try:
import beartype # noqa: F401
except ImportError:
pytest.skip("Beartype not installed")
else:
bearchecker = "beartype.beartype(conf=beartype.BeartypeConf(strategy=beartype.BeartypeStrategy.On))" # noqa: E501
hook = install_import_hook("test.import_hook_tester_beartype_full", bearchecker)
with hook:
from . import import_hook_tester_beartype_full # noqa: F401
def test_import_hook_transitive():
hook = install_import_hook(
"import_hook_tester_transitive", ("typeguard", "typechecked")
"test.import_hook_tester_transitive", "beartype.beartype"
)
import import_hook_tester_transitive # noqa: F401
hook.uninstall()
with hook:
from . import import_hook_tester_transitive # noqa: F401
def test_import_hook_broken_checker():
hook = install_import_hook(
"import_hook_tester_broken_checker", ("jaxtyping", "does_not_exist")
"test.import_hook_tester_broken_checker", "jaxtyping.does_not_exist"
)
with pytest.raises(AttributeError):
import import_hook_tester_broken_checker # noqa: F401
hook.uninstall()
with hook, pytest.raises(AttributeError):
from . import import_hook_tester_broken_checker # noqa: F401
+36 -5
View File
@@ -17,16 +17,17 @@
# IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN
# CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
from typing import Tuple, Union
from typing import NamedTuple, Tuple, Union
import equinox as eqx
import jax
import jax.numpy as jnp
import jax.random as jr
import pytest
from helpers import make_mlp, ParamError
from jaxtyping import f, jaxtyped, PyTree
from jaxtyping import Float, jaxtyped, PyTree
from .helpers import make_mlp, ParamError
def test_direct(typecheck):
@@ -94,7 +95,7 @@ def test_nested_pytrees(getkey, typecheck):
def test_pytree_array(typecheck):
@jaxtyped
@typecheck
def g(x: PyTree[f["..."]]):
def g(x: PyTree[Float[jnp.ndarray, "..."]]):
pass
g(jnp.array(1.0))
@@ -108,7 +109,7 @@ def test_pytree_array(typecheck):
def test_pytree_shaped_array(typecheck, getkey):
@jaxtyped
@typecheck
def g(x: PyTree[f["b c"]]):
def g(x: PyTree[Float[jnp.ndarray, "b c"]]):
pass
g(jnp.array([[1.0]]))
@@ -154,3 +155,33 @@ def test_pytree_tuple(typecheck):
g([1, 1])
with pytest.raises(ParamError):
g([(1, 1), "hi"])
def test_pytree_namedtuple(typecheck):
class CustomNamedTuple(NamedTuple):
x: Float[jnp.ndarray, "a b"]
y: Float[jnp.ndarray, "b c"]
class OtherCustomNamedTuple(NamedTuple):
x: Float[jnp.ndarray, "a b"]
y: Float[jnp.ndarray, "b c"]
@typecheck
def g(x: PyTree[CustomNamedTuple]):
...
g(
CustomNamedTuple(
x=jax.random.normal(jax.random.PRNGKey(42), (3, 2)),
y=jax.random.normal(jax.random.PRNGKey(420), (2, 5)),
)
)
with pytest.raises(ParamError):
g(object())
with pytest.raises(ParamError):
g(
OtherCustomNamedTuple(
x=jax.random.normal(jax.random.PRNGKey(42), (3, 2)),
y=jax.random.normal(jax.random.PRNGKey(420), (2, 5)),
)
)
+16
View File
@@ -0,0 +1,16 @@
import cloudpickle
import numpy as np
import torch
from jaxtyping import AbstractArray, Array, Shaped
def test_pickle():
x = cloudpickle.dumps(Shaped[Array, ""])
y = cloudpickle.dumps(AbstractArray)
z = cloudpickle.dumps(Shaped[np.ndarray, ""])
w = cloudpickle.dumps(Shaped[torch.Tensor, ""])
cloudpickle.loads(x)
cloudpickle.loads(y)
cloudpickle.loads(z)
cloudpickle.loads(w)
+64
View File
@@ -0,0 +1,64 @@
# Copyright (c) 2022 Google LLC
#
# Permission is hereby granted, free of charge, to any person obtaining a copy of
# this software and associated documentation files (the "Software"), to deal in
# the Software without restriction, including without limitation the rights to
# use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of
# the Software, and to permit persons to whom the Software is furnished to do so,
# subject to the following conditions:
#
# The above copyright notice and this permission notice shall be included in all
# copies or substantial portions of the Software.
#
# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS
# FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR
# COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER
# IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN
# CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
import threading
import jax.numpy as jnp
from typeguard import typechecked
from jaxtyping import Array, Float, jaxtyped
class _ErrorableThread(threading.Thread):
def run(self):
try:
super().run()
except Exception as e:
self.exc = e
def join(self, timeout=None):
super().join(timeout)
if hasattr(self, "exc"):
raise self.exc
def test_threading_jaxtyped():
@jaxtyped
@typechecked
def add(x: Float[Array, "a b"], y: Float[Array, "a b"]) -> Float[Array, "a b"]:
return x + y
def run():
a = jnp.array([[1.0, 2.0]])
b = jnp.array([[2.0, 3.0]])
add(a, b)
thread = _ErrorableThread(target=run)
thread.start()
thread.join()
def test_threading_nojaxtyped():
def run():
a = jnp.array([[1.0, 2.0]])
assert isinstance(a, Float[Array, "..."])
thread = _ErrorableThread(target=run)
thread.start()
thread.join()