Steven Silvester
cfc5db7a6c
Add missing space
2016-01-30 19:09:44 -06:00
Steven Silvester
040d0475c1
More cleanup
2016-01-30 15:58:07 -06:00
Steven Silvester
4b2692b7c0
Cleanup
2016-01-30 15:56:19 -06:00
Steven Silvester
4f54b9ed5a
Work around limitation in warnings.warn
2016-01-30 10:37:30 -06:00
Steven Silvester
e24953cf74
Cleanup the _warnings module
2016-01-30 09:17:47 -06:00
Steven Silvester
f4483b775e
Make warn() more explicit
2016-01-30 09:14:55 -06:00
Steven Silvester
6170a7e532
Include the pyx files
2016-01-30 08:59:31 -06:00
Steven Silvester
b710bd21d2
Use a stacklevel of 2 by default for all warnings
2016-01-30 08:57:46 -06:00
Josh Warner
114f7f8ae0
Merge pull request #1898 from ahojnnes/anntzer-peak-local-max
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ENH: Improved defaults for peak_local_max
2016-01-29 20:53:19 -06:00
Johannes Schönberger
433523805f
Fix matching test cases
2016-01-29 09:27:01 +01:00
Johannes Schönberger
91ed378019
Fix bug in exclude_border option
2016-01-29 09:26:12 +01:00
Johannes Schönberger
e552002e72
Fix BRIEF test cases
2016-01-29 09:26:12 +01:00
Johannes Schönberger
dfae40f9a8
Change default threshold_abs value to minimum image intensity
2016-01-29 09:26:12 +01:00
Johannes Schönberger
bbb427b9ea
Fix peak_local_max doctest
2016-01-29 09:26:12 +01:00
Johannes Schönberger
e74da89ede
Fix corner_fast doctest
2016-01-29 09:26:12 +01:00
Johannes Schönberger
024c4328f2
Fix corner_peaks doctest
2016-01-29 09:26:12 +01:00
Johannes Schönberger
88ee3ce96e
Raise error for invalid min_distance values
2016-01-29 09:26:12 +01:00
Johannes Schönberger
3f912903cb
Fix corner orientations unit test
2016-01-29 09:26:12 +01:00
Johannes Schönberger
5751b0cb28
Some improvements to the doc string and code formatting
2016-01-29 09:26:12 +01:00
Johannes Schönberger
fe9d7c73a1
Fix coordinate extraction
2016-01-29 09:26:12 +01:00
Antony Lee
bd2ecff62f
WIP: fix impl. of peak_local_max, update tests.
2016-01-29 09:26:12 +01:00
Antony Lee
58283e7bd5
Change default min_distance; improve docstring.
2016-01-29 09:26:12 +01:00
Antony Lee
f3771aba7e
Saner defaults for peak_local_max, untested.
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First attempt at fixing #1246 .
2016-01-29 09:26:12 +01:00
Juan Nunez-Iglesias
ad51119da1
Merge pull request #1913 from stefanv/contribute_2plus
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Update contributor's guide: all PRs must get two +1's by core team before merge
2016-01-29 14:22:22 +11:00
Stefan van der Walt
9a522c8b44
Update contributor's guide: all PRs must get two +1's by core team before merge
2016-01-28 18:56:57 -08:00
Juan Nunez-Iglesias
aae7f2b615
Merge pull request #1907 from OrkoHunter/threshold_adaptive_block_size
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Modify threshold_adaptive
2016-01-26 10:26:56 +11:00
Juan Nunez-Iglesias
f3a98250ad
Merge pull request #1903 from OrkoHunter/threshold_otsu_min_color
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threshold_otsu can't work with one color images
2016-01-26 10:05:09 +11:00
Himanshu Mishra
df18b53aed
Correct example for threshold_adaptive
2016-01-26 01:59:18 +05:30
Josh Warner
e6f66a2691
Merge pull request #1902 from OrkoHunter/test_orb_fix_lena
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TSTFIX: Do not use lena in test_orb
2016-01-25 13:44:58 -06:00
Himanshu Mishra
41afd05d0a
Modify threshold_adaptive
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1. Improve docstring
2. Raise error for even block_size
3. Test for the ValueError
2016-01-25 19:46:21 +05:30
Himanshu Mishra
1740767a3a
Add test for threshold_otsu on single color image
2016-01-25 13:56:45 +05:30
Himanshu Mishra
d677015806
Do not use lena in test_orb
2016-01-25 13:48:11 +05:30
Juan Nunez-Iglesias
a2379182dc
Merge pull request #1904 from OrkoHunter/clarify_generic_filter_rag
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Add comment in ndi.generic_filter for the use of output, in RAG
2016-01-25 18:48:25 +11:00
Himanshu Mishra
b9199fe765
DOC : Add comment for the use of strided output array for generic_filter in RAG
2016-01-25 12:50:45 +05:30
Juan Nunez-Iglesias
d199ab2dc6
Merge pull request #1839 from grlee77/nd_denoise_tv
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replace separate 2D and 3D Chambolle TV denoising functions with a single nD function
2016-01-25 13:36:15 +11:00
Gregory R. Lee
682f0895e7
TST: add test for constent TV weighting across number of image dimensions for Chambolle algorithm
2016-01-24 12:27:10 -05:00
Himanshu Mishra
28f19d3076
Raise error when single colored image is passed in threshold_otsu method
2016-01-24 20:57:40 +05:30
Panfilov Egor
2d20d4ad39
Merge pull request #1901 from OrkoHunter/test_match_fix_lena
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Use astronaut instead of lena in test_match
2016-01-24 16:45:46 +03:00
Himanshu Mishra
0b285100a4
Use astronaut instead of lena in test_match
2016-01-24 16:24:45 +05:30
Gregory R. Lee
53742be9c6
fix axis bug in multichannel case and add a corresponding test
2016-01-24 02:24:37 -05:00
Gregory R. Lee
a30592a22a
MAINT: explicitly specify axis argument
2016-01-23 11:23:21 -05:00
Gregory R. Lee
e6a1a19337
update default weight to reflect the bugfix from hardcoded 0.5 to 1/(2*ndim)
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use the default weight in all the tests as well.
2016-01-23 11:01:48 -05:00
Gregory R. Lee
dd5a708a33
minor bugfix so that weight gives a consistent amount of smoothing regardless of the number of dimensions.
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As in the original reference, the stepsize should be in both the numerator and denominator of p.
2016-01-23 11:01:15 -05:00
Gregory R. Lee
9f419024ad
Switch _denoise_tv_chambolle to use C-ordering
2016-01-23 10:59:33 -05:00
Gregory R. Lee
4a8a2189f2
use Fortran order for g and p in _denoise_chambolle_nd to avoid a performance regression
2016-01-23 10:59:32 -05:00
Gregory R. Lee
4bc4f0a169
remove try/except in _denoise_chambolle_nd. just use the numpy 1.6 compatible case
2016-01-23 10:59:32 -05:00
Gregory R. Lee
4a0ad77780
update tests for denoise_tv_chambolle
2016-01-23 10:59:32 -05:00
Gregory R. Lee
c2b86d8a02
fix numpy 1.6 compatibility
2016-01-23 10:59:32 -05:00
Gregory R. Lee
2d326a464e
ENH: n-dimensional refactor of TV denoising.
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_denoise_tv_chambolle_2d and _denoise_tv_chambolle_3d are replaced by _denoise_tv_chambolle_nd
The restriction to 2D and 3D in denoies_tv_chambolle was removed.
2016-01-23 10:59:32 -05:00
Stefan van der Walt
b9c951335a
Merge pull request #1887 from ahojnnes/rot-fix
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Fix rotation with resizing and custom center
2016-01-22 08:58:04 -08:00